AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0872110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872110 MtrunA17_Chr6g0453341 100.000 244 0 0 1 244 11 254 0.0 500
Msa0872110 MtrunA17_Chr7g0217661 86.475 244 31 1 1 244 1 242 3.83e-156 433
Msa0872110 MtrunA17_Chr5g0417701 75.200 250 51 3 1 242 1 247 3.34e-135 380
Msa0872110 MtrunA17_Chr4g0042521 75.299 251 51 3 1 243 1 248 2.34e-133 375
Msa0872110 MtrunA17_Chr3g0128801 79.464 224 38 1 27 242 30 253 7.38e-131 369
Msa0872110 MtrunA17_Chr3g0092071 76.856 229 45 1 22 242 19 247 5.77e-130 367
Msa0872110 MtrunA17_Chr3g0128791 79.018 224 39 1 27 242 30 253 1.32e-129 366
Msa0872110 MtrunA17_Chr5g0432611 69.512 246 64 3 8 242 6 251 3.85e-126 357
Msa0872110 MtrunA17_Chr3g0107311 71.020 245 60 2 6 242 13 254 1.07e-124 354
Msa0872110 MtrunA17_Chr3g0107291 70.204 245 62 2 6 242 19 260 2.45e-123 350
Msa0872110 MtrunA17_Chr7g0238681 69.333 225 59 2 28 242 32 256 1.48e-113 326
Msa0872110 MtrunA17_Chr5g0435311 64.257 249 78 3 4 242 59 306 5.99e-113 326
Msa0872110 MtrunA17_Chr4g0031621 62.698 252 84 2 1 242 5 256 3.50e-110 317
Msa0872110 MtrunA17_Chr2g0328261 67.556 225 63 2 28 242 34 258 2.71e-109 315
Msa0872110 MtrunA17_Chr1g0193631 64.889 225 67 4 28 240 30 254 1.28e-105 306
Msa0872110 MtrunA17_Chr7g0271001 59.036 249 89 5 1 237 1 248 1.26e-101 295
Msa0872110 MtrunA17_Chr1g0157061 59.908 217 76 3 35 240 22 238 5.57e-95 278
Msa0872110 MtrunA17_Chr7g0218741 53.200 250 107 4 1 241 3 251 4.27e-90 266
Msa0872110 MtrunA17_Chr7g0218751 58.824 221 83 2 28 240 28 248 1.51e-88 262
Msa0872110 MtrunA17_Chr8g0360041 58.182 220 84 2 28 239 31 250 1.00e-87 260
Msa0872110 MtrunA17_Chr4g0069711 54.464 224 89 4 28 240 61 282 1.79e-86 258
Msa0872110 MtrunA17_Chr5g0433841 53.097 226 97 2 28 244 41 266 9.67e-85 253
Msa0872110 MtrunA17_Chr4g0021561 47.451 255 120 4 1 242 3 256 2.34e-83 249
Msa0872110 MtrunA17_Chr7g0218761 58.911 202 75 2 47 240 8 209 5.17e-82 244
Msa0872110 MtrunA17_Chr5g0398271 54.464 224 90 4 28 240 37 259 1.91e-80 242
Msa0872110 MtrunA17_Chr4g0057091 50.813 246 108 4 6 238 11 256 1.82e-79 239
Msa0872110 MtrunA17_Chr8g0360721 57.789 199 76 2 47 237 17 215 2.07e-78 235
Msa0872110 MtrunA17_Chr3g0109801 50.000 232 99 5 28 242 53 284 4.28e-74 226
Msa0872110 MtrunA17_Chr4g0022851 54.839 124 46 4 1 114 1 124 8.76e-38 128
Msa0872110 MtrunA17_Chr4g0022841 50.862 116 57 0 124 239 1 116 2.58e-37 127
Msa0872110 MtrunA17_Chr2g0324191 44.898 147 69 4 6 142 8 152 7.80e-36 124
Msa0872110 MtrunA17_Chr2g0324181 53.465 101 47 0 142 242 17 117 3.93e-33 116
Msa0872110 MtrunA17_Chr2g0324221 33.778 225 133 7 28 240 35 255 4.79e-29 110
Msa0872110 MtrunA17_Chr2g0324201 32.540 252 154 8 1 240 6 253 1.29e-27 106
Msa0872110 MtrunA17_Chr4g0021641 32.751 229 138 8 28 244 41 265 9.78e-27 104
Msa0872110 MtrunA17_Chr8g0359981 62.500 80 23 4 70 142 2 81 2.86e-26 99.0
Msa0872110 MtrunA17_Chr4g0012801 33.624 229 127 9 25 237 39 258 8.76e-26 101
Msa0872110 MtrunA17_Chr7g0231221 31.674 221 131 9 33 237 53 269 1.85e-23 95.5
Msa0872110 MtrunA17_Chr7g0231211 31.858 226 130 10 28 237 47 264 2.07e-23 95.5
Msa0872110 MtrunA17_Chr4g0055601 29.148 223 146 8 28 240 28 248 2.12e-19 84.3
Msa0872110 MtrunA17_Chr8g0359971 50.649 77 37 1 163 238 1 77 3.60e-19 79.3
Msa0872110 MtrunA17_Chr4g0055061 30.837 227 131 11 28 237 29 246 1.94e-17 79.0
Msa0872110 MtrunA17_Chr5g0399811 28.251 223 147 9 28 240 29 248 9.25e-17 77.0
Msa0872110 MtrunA17_Chr1g0193571 59.259 54 22 0 187 240 4 57 3.57e-16 70.9
Msa0872110 MtrunA17_Chr4g0055561 28.507 221 143 9 28 237 28 244 5.11e-16 75.1
Msa0872110 MtrunA17_Chr4g0038741 29.817 218 122 9 39 237 32 237 7.34e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872110 AT2G03090.1 76.190 252 48 3 1 242 3 252 2.33e-138 389
Msa0872110 AT3G29030.1 83.028 218 36 1 28 244 38 255 9.81e-137 385
Msa0872110 AT1G69530.2 76.000 250 51 2 1 242 1 249 5.78e-136 382
Msa0872110 AT1G69530.1 76.000 250 51 2 1 242 1 249 5.78e-136 382
Msa0872110 AT1G26770.1 76.800 250 48 2 1 242 1 248 3.51e-135 380
Msa0872110 AT1G26770.2 76.800 250 48 2 1 242 11 258 4.06e-135 381
Msa0872110 AT1G69530.3 76.423 246 49 2 1 238 1 245 1.14e-134 380
Msa0872110 AT5G56320.1 68.526 251 70 2 1 242 1 251 1.54e-128 364
Msa0872110 AT5G56320.2 68.526 251 70 2 1 242 1 251 1.54e-128 364
Msa0872110 AT5G56320.3 68.526 251 70 2 1 242 1 251 3.70e-128 365
Msa0872110 AT2G40610.1 68.800 250 68 3 2 242 5 253 4.21e-124 353
Msa0872110 AT5G02260.1 70.667 225 56 2 28 242 32 256 5.49e-116 332
Msa0872110 AT2G39700.1 66.667 243 70 3 11 242 13 255 5.60e-116 332
Msa0872110 AT1G69530.4 67.600 250 42 3 1 242 1 219 2.37e-115 329
Msa0872110 AT1G69530.5 71.304 230 55 3 1 222 1 227 7.58e-115 329
Msa0872110 AT5G05290.1 63.200 250 82 3 2 242 7 255 9.82e-115 329
Msa0872110 AT2G37640.1 70.222 225 57 2 28 242 36 260 1.24e-113 327
Msa0872110 AT3G55500.1 62.109 256 83 4 1 242 3 258 8.75e-112 322
Msa0872110 AT2G28950.1 64.453 256 76 4 1 242 1 255 1.39e-111 321
Msa0872110 AT4G01630.1 58.635 249 91 4 1 237 1 249 7.40e-105 304
Msa0872110 AT1G20190.1 64.159 226 70 3 24 238 22 247 7.32e-102 296
Msa0872110 AT2G37640.2 67.788 208 57 2 45 242 28 235 5.74e-101 293
Msa0872110 AT5G39280.1 54.911 224 95 1 23 240 49 272 8.94e-89 264
Msa0872110 AT5G39300.1 54.911 224 95 1 23 240 50 273 2.66e-88 263
Msa0872110 AT5G39270.1 56.164 219 90 1 28 240 58 276 6.50e-88 262
Msa0872110 AT5G39290.1 55.251 219 92 1 28 240 58 276 5.39e-87 259
Msa0872110 AT1G12560.1 52.893 242 104 3 6 237 14 255 3.23e-84 252
Msa0872110 AT3G15370.1 51.383 253 112 7 1 243 1 252 2.28e-83 249
Msa0872110 AT5G39310.1 55.204 221 92 2 27 240 89 309 2.62e-83 251
Msa0872110 AT5G39260.1 51.220 246 109 3 6 240 14 259 1.62e-81 245
Msa0872110 AT1G62980.1 55.357 224 88 4 28 240 31 253 3.92e-81 244
Msa0872110 AT1G20190.2 60.963 187 62 3 63 238 2 188 1.61e-79 238
Msa0872110 AT3G03220.1 50.000 224 103 2 28 242 40 263 4.85e-78 236
Msa0872110 AT3G15370.2 45.936 283 112 8 1 243 1 282 1.19e-76 233
Msa0872110 AT4G38210.1 47.431 253 120 4 2 242 3 254 4.62e-75 228
Msa0872110 AT4G28250.1 34.413 247 145 9 7 240 15 257 7.34e-31 115
Msa0872110 AT2G20750.1 33.186 226 137 7 28 240 40 264 1.33e-30 114
Msa0872110 AT4G28250.2 33.333 246 143 9 7 240 15 251 1.87e-27 106
Msa0872110 AT1G65680.1 32.000 225 134 8 28 237 47 267 4.98e-25 100
Msa0872110 AT2G20750.2 35.152 165 95 5 28 181 40 203 3.46e-23 94.0
Msa0872110 AT1G65681.1 32.536 209 124 9 42 237 12 216 4.95e-22 91.3
Msa0872110 AT2G45110.1 32.301 226 126 9 31 237 36 253 9.65e-22 91.3
Msa0872110 AT4G28250.4 34.211 190 106 7 7 186 15 195 1.26e-20 87.0
Msa0872110 AT4G28250.3 36.527 167 87 7 25 181 33 190 2.51e-20 86.3
Msa0872110 AT3G60570.1 28.049 246 158 7 6 237 11 251 5.14e-19 84.0
Msa0872110 AT4G17030.1 30.000 230 140 8 28 243 27 249 6.52e-19 83.2
Msa0872110 AT3G45970.2 27.830 212 127 9 46 239 14 217 1.57e-14 71.2
Msa0872110 AT3G60570.2 26.829 205 132 6 46 237 4 203 5.61e-14 69.3
Msa0872110 AT3G45970.1 27.053 207 125 9 51 239 46 244 7.37e-12 63.9
Msa0872110 AT4G38400.1 25.728 206 128 9 51 239 47 244 3.62e-11 62.0
Msa0872110 AT3G45960.2 26.471 204 125 9 51 237 46 241 8.49e-11 60.8

Find 95 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTTACTCAAATGATTAA+TGG 0.166386 6_1:-7426558 Msa0872110:three_prime_UTR
TCCATGGCTATGGTAGAAAT+TGG 0.198703 6_1:-7428352 Msa0872110:CDS
GCTTCATAGATGTGTATATT+TGG 0.204219 6_1:-7426483 Msa0872110:three_prime_UTR
TATATGCAAGATGCATTTAA+AGG 0.207917 6_1:+7426831 None:intergenic
CTAAACTAAGTCATAGTTAA+AGG 0.241625 6_1:-7426794 Msa0872110:three_prime_UTR
GAGCCATGGAGACACCATTT+TGG 0.255354 6_1:+7427685 None:intergenic
AATGCACATGCAACCTTCTA+TGG 0.293252 6_1:-7428320 Msa0872110:CDS
CATTTAGGCTTTCTTGTTCT+AGG 0.308423 6_1:-7428401 Msa0872110:CDS
TCTAGTCCTTGAACCTTTGA+TGG 0.309672 6_1:+7427036 None:intergenic
GTAGAAGAAGAGGTGGAATA+AGG 0.318290 6_1:-7427138 Msa0872110:CDS
GCCCCACCCAGTTGGTCCTT+TGG 0.320692 6_1:-7426893 Msa0872110:CDS
GGAATGGAGTTGGAATAAAT+AGG 0.331817 6_1:+7428587 None:intergenic
GGCAAGCCATGTCAAGGAAT+TGG 0.336529 6_1:-7427012 Msa0872110:CDS
CAAGGAATTGGGGACAAAAT+TGG 0.338609 6_1:-7427000 Msa0872110:CDS
GCAAGCCATGTCAAGGAATT+GGG 0.340806 6_1:-7427011 Msa0872110:CDS
TATATTTGGCACAACTAAAA+TGG 0.356768 6_1:-7426469 Msa0872110:three_prime_UTR
TCAGGTGGTGCATGTGGATA+TGG 0.358218 6_1:-7427817 Msa0872110:intron
TTGTTCCTGTTGTTTATAGA+AGG 0.359748 6_1:-7427546 Msa0872110:intron
CCATGGCTATGGTAGAAATT+GGG 0.365156 6_1:-7428351 Msa0872110:CDS
CACAATACTATGACCATTAC+CGG 0.371668 6_1:+7426928 None:intergenic
AGCATCACTGCCACCATAGA+AGG 0.378869 6_1:+7428307 None:intergenic
CAGAGTAACTCTTATTTGAA+TGG 0.388733 6_1:-7426977 Msa0872110:CDS
GAGAGATCAAAATGGTGATT+AGG 0.389572 6_1:+7427610 None:intergenic
TATGGTGGCAGTGATGCTTC+TGG 0.392725 6_1:-7428302 Msa0872110:CDS
GTGACTAATGTTGGAGGTGC+TGG 0.409148 6_1:-7427076 Msa0872110:CDS
ATGTAATATACTTTAATTCA+AGG 0.409751 6_1:-7426438 Msa0872110:three_prime_UTR
GGTTTGTCCAAAGGACCAAC+TGG 0.413288 6_1:+7426886 None:intergenic
TAGTACTCAATAAGTGTTAG+TGG 0.413325 6_1:-7426716 Msa0872110:three_prime_UTR
AACTTGTATAGTCAAGGTTA+TGG 0.413609 6_1:-7427793 Msa0872110:CDS
ATATGCAAGATGCATTTAAA+GGG 0.415949 6_1:+7426832 None:intergenic
TGAGCAATGTGTTGGAAAAC+AGG 0.417463 6_1:+7427583 None:intergenic
TTAGTCCTTGTGACTAATGT+TGG 0.430036 6_1:-7427085 Msa0872110:CDS
TTTGTAGTCACCACCGGTAA+TGG 0.435254 6_1:-7426941 Msa0872110:CDS
AATTACCTTCTATAAACAAC+AGG 0.442368 6_1:+7427541 None:intergenic
TCAAAGGTTCAAGGACTAGA+TGG 0.459280 6_1:-7427033 Msa0872110:CDS
ACTTGTATAGTCAAGGTTAT+GGG 0.466026 6_1:-7427792 Msa0872110:CDS
ATCTCATATGTCCATGGCTA+TGG 0.469731 6_1:-7428362 Msa0872110:CDS
GGAATAAGGTTCACAATCAA+TGG 0.470548 6_1:-7427124 Msa0872110:CDS
CTTTATATTGAGCAATGTGT+TGG 0.478496 6_1:+7427575 None:intergenic
CTGTAGCCATCAAAGGTTCA+AGG 0.485843 6_1:-7427042 Msa0872110:CDS
TCCAAAGGACCAACTGGGTG+GGG 0.487484 6_1:+7426892 None:intergenic
GAATGGAGTTGGAATAAATA+GGG 0.488366 6_1:+7428588 None:intergenic
TCCTTGATCTCATATGTCCA+TGG 0.488957 6_1:-7428368 Msa0872110:CDS
ATACTTAAACAATATTGTAA+AGG 0.491642 6_1:+7426303 None:intergenic
GTCCTTGTGACTAATGTTGG+AGG 0.495647 6_1:-7427082 Msa0872110:CDS
AATGTGCTAGTGACCCAAAA+TGG 0.497071 6_1:-7427699 Msa0872110:CDS
CACATTGCTCAATATAAAGC+TGG 0.505971 6_1:-7427571 Msa0872110:CDS
AGGGTAAGGTGTAGAAGAAG+AGG 0.509744 6_1:-7427148 Msa0872110:CDS
CTTTCATTTGTAGTCACCAC+CGG 0.512167 6_1:-7426947 Msa0872110:CDS
AGTGATGCTTCTGGCACAAT+GGG 0.518333 6_1:-7428293 Msa0872110:intron
ACATTACACAAATGAAGCAT+TGG 0.519266 6_1:+7426241 None:intergenic
GCCACTAATTTCTGTCCACC+TGG 0.524649 6_1:-7427649 Msa0872110:CDS
TTTAACTGAGGATGATAAAG+GGG 0.530915 6_1:-7426404 Msa0872110:three_prime_UTR
GCCATGGACATATGAGATCA+AGG 0.531008 6_1:+7428367 None:intergenic
TTAATGTTGCCCCACCCAGT+TGG 0.531923 6_1:-7426901 Msa0872110:CDS
AGATCAAAATGGTGATTAGG+AGG 0.535090 6_1:+7427613 None:intergenic
TTCAACAATGGTTTGAGTTG+TGG 0.535378 6_1:-7427739 Msa0872110:CDS
TGTAATATACTTTAATTCAA+GGG 0.535391 6_1:-7426437 Msa0872110:three_prime_UTR
CAGGTTGAGAGAGATCAAAA+TGG 0.536275 6_1:+7427602 None:intergenic
TTTAAAGGGTTAGTTAGTAG+AGG 0.540571 6_1:+7426846 None:intergenic
ATTTCTGTCCACCTGGTGGT+TGG 0.547131 6_1:-7427642 Msa0872110:CDS
TCCTTTGGACAAACCTACAC+TGG 0.547722 6_1:-7426878 Msa0872110:CDS
GAGGAACTGCCTTCCAGTGT+AGG 0.551003 6_1:+7426865 None:intergenic
TTGTCCCCAATTCCTTGACA+TGG 0.556187 6_1:+7427006 None:intergenic
CCCAATTTCTACCATAGCCA+TGG 0.556965 6_1:+7428351 None:intergenic
GACCCAAAATGGTGTCTCCA+TGG 0.557622 6_1:-7427688 Msa0872110:CDS
GTCCAAAGGACCAACTGGGT+GGG 0.563335 6_1:+7426891 None:intergenic
ATGTATCTCACACGTGTCAG+TGG 0.565443 6_1:-7426765 Msa0872110:three_prime_UTR
GTAAGGTGTAGAAGAAGAGG+TGG 0.567385 6_1:-7427145 Msa0872110:CDS
GCTATGGTAGAAATTGGGGT+TGG 0.571222 6_1:-7428346 Msa0872110:CDS
CAGTGATGCTTCTGGCACAA+TGG 0.576572 6_1:-7428294 Msa0872110:CDS
TCCAGTGTAGGTTTGTCCAA+AGG 0.584012 6_1:+7426877 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 6_1:-7427799 Msa0872110:CDS
GTGCATTCTGTAGCCATCAA+AGG 0.587053 6_1:-7427049 Msa0872110:CDS
ACCAGGTGGACAGAAATTAG+TGG 0.590692 6_1:+7427648 None:intergenic
TTTGAGTAAATAGAAGTGAT+CGG 0.592665 6_1:+7426568 None:intergenic
TATATATGTCGATGTCGCGA+TGG 0.601763 6_1:+7426598 None:intergenic
GGAGGGTCACACCAACCACC+AGG 0.606947 6_1:+7427631 None:intergenic
AGCACTGCATTATTCAACAA+TGG 0.608720 6_1:-7427751 Msa0872110:CDS
CACCTCCAACATTAGTCACA+AGG 0.609149 6_1:+7427080 None:intergenic
AAAATTTCAGGTGGTGCATG+TGG 0.610538 6_1:-7427823 Msa0872110:intron
CTAGATGGCAAGCCATGTCA+AGG 0.612177 6_1:-7427018 Msa0872110:CDS
TGTCCAAAGGACCAACTGGG+TGG 0.615300 6_1:+7426890 None:intergenic
ACTAATTTCTGTCCACCTGG+TGG 0.617803 6_1:-7427646 Msa0872110:CDS
CAAGCCATGTCAAGGAATTG+GGG 0.622367 6_1:-7427010 Msa0872110:CDS
CATGGCTATGGTAGAAATTG+GGG 0.623894 6_1:-7428350 Msa0872110:CDS
TTGGACAAACCTACACTGGA+AGG 0.627049 6_1:-7426874 Msa0872110:CDS
CAGTAACAACAATAGAGCCA+TGG 0.632082 6_1:+7427671 None:intergenic
GCACATGCAACCTTCTATGG+TGG 0.645972 6_1:-7428317 Msa0872110:CDS
TGGAGTTGGAATAAATAGGG+AGG 0.646851 6_1:+7428591 None:intergenic
TCTCACACGTGTCAGTGGAG+CGG 0.661239 6_1:-7426760 Msa0872110:three_prime_UTR
GATCAAAATGGTGATTAGGA+GGG 0.666299 6_1:+7427614 None:intergenic
GTTTGTCCAAAGGACCAACT+GGG 0.667033 6_1:+7426887 None:intergenic
GGGTCACACCAACCACCAGG+TGG 0.687412 6_1:+7427634 None:intergenic
AATACTATGACCATTACCGG+TGG 0.718853 6_1:+7426931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATGTAAAAATTTC+AGG - chr6_1:7426970-7426989 Msa0872110:CDS 15.0%
!! ATGTAATATACTTTAATTCA+AGG - chr6_1:7428367-7428386 Msa0872110:CDS 15.0%
!! TGTAATATACTTTAATTCAA+GGG - chr6_1:7428368-7428387 Msa0872110:CDS 15.0%
!! ATACTTAAACAATATTGTAA+AGG + chr6_1:7428505-7428524 None:intergenic 15.0%
!! AACAAAAATGTAAAAATTTC+AGG - chr6_1:7426970-7426989 Msa0872110:CDS 15.0%
!! ATGTAATATACTTTAATTCA+AGG - chr6_1:7428367-7428386 Msa0872110:CDS 15.0%
!! TGTAATATACTTTAATTCAA+GGG - chr6_1:7428368-7428387 Msa0872110:CDS 15.0%
!! ATACTTAAACAATATTGTAA+AGG + chr6_1:7428505-7428524 None:intergenic 15.0%
!! ATGTGAACATAAAGAAAAAA+AGG + chr6_1:7426312-7426331 None:intergenic 20.0%
!! AAAAATGTAAAAATTTCAGG+TGG - chr6_1:7426973-7426992 Msa0872110:CDS 20.0%
!!! TGATTTTCTCAAAATATTAG+CGG + chr6_1:7427450-7427469 None:intergenic 20.0%
!!! TTAATCTTTTACTACTTGTT+TGG - chr6_1:7427590-7427609 Msa0872110:CDS 20.0%
!! CTATTTACTCAAATGATTAA+TGG - chr6_1:7428247-7428266 Msa0872110:intron 20.0%
!! ATGTGAACATAAAGAAAAAA+AGG + chr6_1:7426312-7426331 None:intergenic 20.0%
!! AAAAATGTAAAAATTTCAGG+TGG - chr6_1:7426973-7426992 Msa0872110:CDS 20.0%
!!! TGATTTTCTCAAAATATTAG+CGG + chr6_1:7427450-7427469 None:intergenic 20.0%
!!! TTAATCTTTTACTACTTGTT+TGG - chr6_1:7427590-7427609 Msa0872110:CDS 20.0%
!! CTATTTACTCAAATGATTAA+TGG - chr6_1:7428247-7428266 Msa0872110:intron 20.0%
!!! GAGATTTTGCATTTTTTTGA+GGG + chr6_1:7426242-7426261 None:intergenic 25.0%
!!! TGAGATTTTGCATTTTTTTG+AGG + chr6_1:7426243-7426262 None:intergenic 25.0%
! AAAGGAAGAGAATTAATTAC+AGG + chr6_1:7426282-7426301 None:intergenic 25.0%
! AGAAAAAAAGGAAGACATAA+AGG + chr6_1:7426300-7426319 None:intergenic 25.0%
! TAATGTTTGCTTAAACATTG+CGG - chr6_1:7426551-7426570 Msa0872110:three_prime_UTR 25.0%
!! GTACAATATAAAGGATTTTG+AGG + chr6_1:7426618-7426637 None:intergenic 25.0%
! CAATTACGAGTACAATATAA+AGG + chr6_1:7426627-7426646 None:intergenic 25.0%
!! TTGTTTTCGAAATTCGATTA+GGG + chr6_1:7426838-7426857 None:intergenic 25.0%
!! ATTGTTTTCGAAATTCGATT+AGG + chr6_1:7426839-7426858 None:intergenic 25.0%
! AATTACCTTCTATAAACAAC+AGG + chr6_1:7427267-7427286 None:intergenic 25.0%
! ATCCTTAACAATATGTGAAA+TGG - chr6_1:7427312-7427331 Msa0872110:intron 25.0%
! ATCCATTTCACATATTGTTA+AGG + chr6_1:7427317-7427336 None:intergenic 25.0%
! AGAAAAAAAAGTTAGCATCA+TGG + chr6_1:7427616-7427635 None:intergenic 25.0%
!!! AACTTTTTTTTCTTCATGCA+TGG - chr6_1:7427623-7427642 Msa0872110:CDS 25.0%
! ATATGCAAGATGCATTTAAA+GGG + chr6_1:7427976-7427995 None:intergenic 25.0%
! TATATGCAAGATGCATTTAA+AGG + chr6_1:7427977-7427996 None:intergenic 25.0%
! CTAAACTAAGTCATAGTTAA+AGG - chr6_1:7428011-7428030 Msa0872110:intron 25.0%
! TTTGAGTAAATAGAAGTGAT+CGG + chr6_1:7428240-7428259 None:intergenic 25.0%
! TATATTTGGCACAACTAAAA+TGG - chr6_1:7428336-7428355 Msa0872110:CDS 25.0%
!!! TTTTTAACTGAGGATGATAA+AGG - chr6_1:7428399-7428418 Msa0872110:CDS 25.0%
!!! TTTTAACTGAGGATGATAAA+GGG - chr6_1:7428400-7428419 Msa0872110:CDS 25.0%
!!! GAGATTTTGCATTTTTTTGA+GGG + chr6_1:7426242-7426261 None:intergenic 25.0%
!!! TGAGATTTTGCATTTTTTTG+AGG + chr6_1:7426243-7426262 None:intergenic 25.0%
! AAAGGAAGAGAATTAATTAC+AGG + chr6_1:7426282-7426301 None:intergenic 25.0%
! AGAAAAAAAGGAAGACATAA+AGG + chr6_1:7426300-7426319 None:intergenic 25.0%
! TAATGTTTGCTTAAACATTG+CGG - chr6_1:7426551-7426570 Msa0872110:three_prime_UTR 25.0%
!! GTACAATATAAAGGATTTTG+AGG + chr6_1:7426618-7426637 None:intergenic 25.0%
! CAATTACGAGTACAATATAA+AGG + chr6_1:7426627-7426646 None:intergenic 25.0%
!! TTGTTTTCGAAATTCGATTA+GGG + chr6_1:7426838-7426857 None:intergenic 25.0%
!! ATTGTTTTCGAAATTCGATT+AGG + chr6_1:7426839-7426858 None:intergenic 25.0%
! AATTACCTTCTATAAACAAC+AGG + chr6_1:7427267-7427286 None:intergenic 25.0%
! ATCCTTAACAATATGTGAAA+TGG - chr6_1:7427312-7427331 Msa0872110:intron 25.0%
! ATCCATTTCACATATTGTTA+AGG + chr6_1:7427317-7427336 None:intergenic 25.0%
! AGAAAAAAAAGTTAGCATCA+TGG + chr6_1:7427616-7427635 None:intergenic 25.0%
!!! AACTTTTTTTTCTTCATGCA+TGG - chr6_1:7427623-7427642 Msa0872110:CDS 25.0%
! ATATGCAAGATGCATTTAAA+GGG + chr6_1:7427976-7427995 None:intergenic 25.0%
! TATATGCAAGATGCATTTAA+AGG + chr6_1:7427977-7427996 None:intergenic 25.0%
! CTAAACTAAGTCATAGTTAA+AGG - chr6_1:7428011-7428030 Msa0872110:intron 25.0%
! TTTGAGTAAATAGAAGTGAT+CGG + chr6_1:7428240-7428259 None:intergenic 25.0%
! TATATTTGGCACAACTAAAA+TGG - chr6_1:7428336-7428355 Msa0872110:CDS 25.0%
!!! TTTTTAACTGAGGATGATAA+AGG - chr6_1:7428399-7428418 Msa0872110:CDS 25.0%
!!! TTTTAACTGAGGATGATAAA+GGG - chr6_1:7428400-7428419 Msa0872110:CDS 25.0%
GAATGGAGTTGGAATAAATA+GGG + chr6_1:7426220-7426239 None:intergenic 30.0%
!!! TTTGCATTTTTTTGAGGGAA+TGG + chr6_1:7426237-7426256 None:intergenic 30.0%
! TATGTTCTAGCTATACTTTG+TGG - chr6_1:7426714-7426733 Msa0872110:three_prime_UTR 30.0%
TGGTCTGGTTATTAAAACAA+TGG + chr6_1:7426748-7426767 None:intergenic 30.0%
! GCAAACACATTTGTTAGTTA+TGG + chr6_1:7426938-7426957 None:intergenic 30.0%
TATGGAAACTTGTATAGTCA+AGG - chr6_1:7427006-7427025 Msa0872110:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG - chr6_1:7427012-7427031 Msa0872110:CDS 30.0%
ACTTGTATAGTCAAGGTTAT+GGG - chr6_1:7427013-7427032 Msa0872110:CDS 30.0%
CTTTATATTGAGCAATGTGT+TGG + chr6_1:7427233-7427252 None:intergenic 30.0%
! TTGTTCCTGTTGTTTATAGA+AGG - chr6_1:7427259-7427278 Msa0872110:intron 30.0%
TCACATATTGTTAAGGATGA+AGG + chr6_1:7427310-7427329 None:intergenic 30.0%
ACTTACATATCTATGAAGCA+AGG + chr6_1:7427551-7427570 None:intergenic 30.0%
!! ATGCATGGTTTTTGATTGAA+GGG - chr6_1:7427638-7427657 Msa0872110:CDS 30.0%
! CAGAGTAACTCTTATTTGAA+TGG - chr6_1:7427828-7427847 Msa0872110:intron 30.0%
!! TTTAAAGGGTTAGTTAGTAG+AGG + chr6_1:7427962-7427981 None:intergenic 30.0%
TAGTACTCAATAAGTGTTAG+TGG - chr6_1:7428089-7428108 Msa0872110:intron 30.0%
! GCACTTTTAATATGAAGTGT+TGG + chr6_1:7428127-7428146 None:intergenic 30.0%
GCTTCATAGATGTGTATATT+TGG - chr6_1:7428322-7428341 Msa0872110:CDS 30.0%
TTTAACTGAGGATGATAAAG+GGG - chr6_1:7428401-7428420 Msa0872110:CDS 30.0%
ACATTACACAAATGAAGCAT+TGG + chr6_1:7428567-7428586 None:intergenic 30.0%
GAATGGAGTTGGAATAAATA+GGG + chr6_1:7426220-7426239 None:intergenic 30.0%
!!! TTTGCATTTTTTTGAGGGAA+TGG + chr6_1:7426237-7426256 None:intergenic 30.0%
! TATGTTCTAGCTATACTTTG+TGG - chr6_1:7426714-7426733 Msa0872110:three_prime_UTR 30.0%
TGGTCTGGTTATTAAAACAA+TGG + chr6_1:7426748-7426767 None:intergenic 30.0%
! GCAAACACATTTGTTAGTTA+TGG + chr6_1:7426938-7426957 None:intergenic 30.0%
TATGGAAACTTGTATAGTCA+AGG - chr6_1:7427006-7427025 Msa0872110:CDS 30.0%
AACTTGTATAGTCAAGGTTA+TGG - chr6_1:7427012-7427031 Msa0872110:CDS 30.0%
ACTTGTATAGTCAAGGTTAT+GGG - chr6_1:7427013-7427032 Msa0872110:CDS 30.0%
CTTTATATTGAGCAATGTGT+TGG + chr6_1:7427233-7427252 None:intergenic 30.0%
! TTGTTCCTGTTGTTTATAGA+AGG - chr6_1:7427259-7427278 Msa0872110:intron 30.0%
TCACATATTGTTAAGGATGA+AGG + chr6_1:7427310-7427329 None:intergenic 30.0%
ACTTACATATCTATGAAGCA+AGG + chr6_1:7427551-7427570 None:intergenic 30.0%
!! ATGCATGGTTTTTGATTGAA+GGG - chr6_1:7427638-7427657 Msa0872110:CDS 30.0%
! CAGAGTAACTCTTATTTGAA+TGG - chr6_1:7427828-7427847 Msa0872110:intron 30.0%
!! TTTAAAGGGTTAGTTAGTAG+AGG + chr6_1:7427962-7427981 None:intergenic 30.0%
TAGTACTCAATAAGTGTTAG+TGG - chr6_1:7428089-7428108 Msa0872110:intron 30.0%
! GCACTTTTAATATGAAGTGT+TGG + chr6_1:7428127-7428146 None:intergenic 30.0%
GCTTCATAGATGTGTATATT+TGG - chr6_1:7428322-7428341 Msa0872110:CDS 30.0%
TTTAACTGAGGATGATAAAG+GGG - chr6_1:7428401-7428420 Msa0872110:CDS 30.0%
ACATTACACAAATGAAGCAT+TGG + chr6_1:7428567-7428586 None:intergenic 30.0%
GGAATGGAGTTGGAATAAAT+AGG + chr6_1:7426221-7426240 None:intergenic 35.0%
!!! TTTTTTTGAGGGAATGGAGT+TGG + chr6_1:7426231-7426250 None:intergenic 35.0%
CTCTTATGTTGCATTTATGC+AGG - chr6_1:7426371-7426390 Msa0872110:three_prime_UTR 35.0%
GCAGGAAAAATGTCTCATTT+AGG - chr6_1:7426389-7426408 Msa0872110:three_prime_UTR 35.0%
CATTTAGGCTTTCTTGTTCT+AGG - chr6_1:7426404-7426423 Msa0872110:three_prime_UTR 35.0%
AAAATTCTTAGCCATGCTCA+TGG + chr6_1:7426673-7426692 None:intergenic 35.0%
! AGCATGGCTAAGAATTTTGT+TGG - chr6_1:7426675-7426694 Msa0872110:three_prime_UTR 35.0%
GTTGAAGTTCGAGCAATTTA+AGG + chr6_1:7426811-7426830 None:intergenic 35.0%
AAACAATCGAGCCATTGTAA+AGG - chr6_1:7426852-7426871 Msa0872110:exon 35.0%
AGCACTGCATTATTCAACAA+TGG - chr6_1:7427054-7427073 Msa0872110:CDS 35.0%
!! TTCAACAATGGTTTGAGTTG+TGG - chr6_1:7427066-7427085 Msa0872110:CDS 35.0%
GATCAAAATGGTGATTAGGA+GGG + chr6_1:7427194-7427213 None:intergenic 35.0%
AGATCAAAATGGTGATTAGG+AGG + chr6_1:7427195-7427214 None:intergenic 35.0%
GAGAGATCAAAATGGTGATT+AGG + chr6_1:7427198-7427217 None:intergenic 35.0%
CACATTGCTCAATATAAAGC+TGG - chr6_1:7427234-7427253 Msa0872110:intron 35.0%
GACTATGTAACTATGAAGCA+CGG - chr6_1:7427390-7427409 Msa0872110:intron 35.0%
TCTCAAAATATTAGCGGTGT+CGG + chr6_1:7427444-7427463 None:intergenic 35.0%
GTGTAATTATGTGTCAGTGT+CGG - chr6_1:7427479-7427498 Msa0872110:intron 35.0%
!! CATGCATGGTTTTTGATTGA+AGG - chr6_1:7427637-7427656 Msa0872110:CDS 35.0%
!! TGGTTTTTGATTGAAGGGTA+AGG - chr6_1:7427643-7427662 Msa0872110:CDS 35.0%
GGAATAAGGTTCACAATCAA+TGG - chr6_1:7427681-7427700 Msa0872110:CDS 35.0%
TTAGTCCTTGTGACTAATGT+TGG - chr6_1:7427720-7427739 Msa0872110:CDS 35.0%
CACAATACTATGACCATTAC+CGG + chr6_1:7427880-7427899 None:intergenic 35.0%
GGAATGGAGTTGGAATAAAT+AGG + chr6_1:7426221-7426240 None:intergenic 35.0%
!!! TTTTTTTGAGGGAATGGAGT+TGG + chr6_1:7426231-7426250 None:intergenic 35.0%
CTCTTATGTTGCATTTATGC+AGG - chr6_1:7426371-7426390 Msa0872110:three_prime_UTR 35.0%
GCAGGAAAAATGTCTCATTT+AGG - chr6_1:7426389-7426408 Msa0872110:three_prime_UTR 35.0%
CATTTAGGCTTTCTTGTTCT+AGG - chr6_1:7426404-7426423 Msa0872110:three_prime_UTR 35.0%
AAAATTCTTAGCCATGCTCA+TGG + chr6_1:7426673-7426692 None:intergenic 35.0%
! AGCATGGCTAAGAATTTTGT+TGG - chr6_1:7426675-7426694 Msa0872110:three_prime_UTR 35.0%
GTTGAAGTTCGAGCAATTTA+AGG + chr6_1:7426811-7426830 None:intergenic 35.0%
AAACAATCGAGCCATTGTAA+AGG - chr6_1:7426852-7426871 Msa0872110:exon 35.0%
AGCACTGCATTATTCAACAA+TGG - chr6_1:7427054-7427073 Msa0872110:CDS 35.0%
!! TTCAACAATGGTTTGAGTTG+TGG - chr6_1:7427066-7427085 Msa0872110:CDS 35.0%
GATCAAAATGGTGATTAGGA+GGG + chr6_1:7427194-7427213 None:intergenic 35.0%
AGATCAAAATGGTGATTAGG+AGG + chr6_1:7427195-7427214 None:intergenic 35.0%
GAGAGATCAAAATGGTGATT+AGG + chr6_1:7427198-7427217 None:intergenic 35.0%
CACATTGCTCAATATAAAGC+TGG - chr6_1:7427234-7427253 Msa0872110:intron 35.0%
GACTATGTAACTATGAAGCA+CGG - chr6_1:7427390-7427409 Msa0872110:intron 35.0%
TCTCAAAATATTAGCGGTGT+CGG + chr6_1:7427444-7427463 None:intergenic 35.0%
GTGTAATTATGTGTCAGTGT+CGG - chr6_1:7427479-7427498 Msa0872110:intron 35.0%
!! CATGCATGGTTTTTGATTGA+AGG - chr6_1:7427637-7427656 Msa0872110:CDS 35.0%
!! TGGTTTTTGATTGAAGGGTA+AGG - chr6_1:7427643-7427662 Msa0872110:CDS 35.0%
GGAATAAGGTTCACAATCAA+TGG - chr6_1:7427681-7427700 Msa0872110:CDS 35.0%
TTAGTCCTTGTGACTAATGT+TGG - chr6_1:7427720-7427739 Msa0872110:CDS 35.0%
CACAATACTATGACCATTAC+CGG + chr6_1:7427880-7427899 None:intergenic 35.0%
TGGAGTTGGAATAAATAGGG+AGG + chr6_1:7426217-7426236 None:intergenic 40.0%
TCCTTGATCTCATATGTCCA+TGG - chr6_1:7426437-7426456 Msa0872110:three_prime_UTR 40.0%
ATCTCATATGTCCATGGCTA+TGG - chr6_1:7426443-7426462 Msa0872110:three_prime_UTR 40.0%
TCCATGGCTATGGTAGAAAT+TGG - chr6_1:7426453-7426472 Msa0872110:three_prime_UTR 40.0%
CCATGGCTATGGTAGAAATT+GGG - chr6_1:7426454-7426473 Msa0872110:three_prime_UTR 40.0%
CATGGCTATGGTAGAAATTG+GGG - chr6_1:7426455-7426474 Msa0872110:three_prime_UTR 40.0%
AATGCACATGCAACCTTCTA+TGG - chr6_1:7426485-7426504 Msa0872110:three_prime_UTR 40.0%
GCAATATGAAACCATGAGCA+TGG - chr6_1:7426659-7426678 Msa0872110:three_prime_UTR 40.0%
CCATGAATAAGAAGTCTCAC+CGG + chr6_1:7426780-7426799 None:intergenic 40.0%
!! CCTTGAACTAGCCTTTACAA+TGG + chr6_1:7426866-7426885 None:intergenic 40.0%
! CCATTGTAAAGGCTAGTTCA+AGG - chr6_1:7426863-7426882 Msa0872110:CDS 40.0%
TTCAACTTGGTTGAACTGTC+TGG - chr6_1:7426886-7426905 Msa0872110:CDS 40.0%
! AAAATTTCAGGTGGTGCATG+TGG - chr6_1:7426982-7427001 Msa0872110:CDS 40.0%
AATGTGCTAGTGACCCAAAA+TGG - chr6_1:7427106-7427125 Msa0872110:CDS 40.0%
CAGTAACAACAATAGAGCCA+TGG + chr6_1:7427137-7427156 None:intergenic 40.0%
! CAGGTTGAGAGAGATCAAAA+TGG + chr6_1:7427206-7427225 None:intergenic 40.0%
TGAGCAATGTGTTGGAAAAC+AGG + chr6_1:7427225-7427244 None:intergenic 40.0%
GTAACTATGAAGCACGGATA+CGG - chr6_1:7427396-7427415 Msa0872110:intron 40.0%
GTAGAAGAAGAGGTGGAATA+AGG - chr6_1:7427667-7427686 Msa0872110:CDS 40.0%
TCTAGTCCTTGAACCTTTGA+TGG + chr6_1:7427772-7427791 None:intergenic 40.0%
TCAAAGGTTCAAGGACTAGA+TGG - chr6_1:7427772-7427791 Msa0872110:CDS 40.0%
CAAGGAATTGGGGACAAAAT+TGG - chr6_1:7427805-7427824 Msa0872110:CDS 40.0%
CTTTCATTTGTAGTCACCAC+CGG - chr6_1:7427858-7427877 Msa0872110:intron 40.0%
AATACTATGACCATTACCGG+TGG + chr6_1:7427877-7427896 None:intergenic 40.0%
TATATATGTCGATGTCGCGA+TGG + chr6_1:7428210-7428229 None:intergenic 40.0%
!!! GGCGCTTTAGTTTTTAACTG+AGG - chr6_1:7428389-7428408 Msa0872110:CDS 40.0%
TGGAGTTGGAATAAATAGGG+AGG + chr6_1:7426217-7426236 None:intergenic 40.0%
TCCTTGATCTCATATGTCCA+TGG - chr6_1:7426437-7426456 Msa0872110:three_prime_UTR 40.0%
ATCTCATATGTCCATGGCTA+TGG - chr6_1:7426443-7426462 Msa0872110:three_prime_UTR 40.0%
TCCATGGCTATGGTAGAAAT+TGG - chr6_1:7426453-7426472 Msa0872110:three_prime_UTR 40.0%
CCATGGCTATGGTAGAAATT+GGG - chr6_1:7426454-7426473 Msa0872110:three_prime_UTR 40.0%
CATGGCTATGGTAGAAATTG+GGG - chr6_1:7426455-7426474 Msa0872110:three_prime_UTR 40.0%
AATGCACATGCAACCTTCTA+TGG - chr6_1:7426485-7426504 Msa0872110:three_prime_UTR 40.0%
GCAATATGAAACCATGAGCA+TGG - chr6_1:7426659-7426678 Msa0872110:three_prime_UTR 40.0%
CCATGAATAAGAAGTCTCAC+CGG + chr6_1:7426780-7426799 None:intergenic 40.0%
!! CCTTGAACTAGCCTTTACAA+TGG + chr6_1:7426866-7426885 None:intergenic 40.0%
! CCATTGTAAAGGCTAGTTCA+AGG - chr6_1:7426863-7426882 Msa0872110:CDS 40.0%
TTCAACTTGGTTGAACTGTC+TGG - chr6_1:7426886-7426905 Msa0872110:CDS 40.0%
! AAAATTTCAGGTGGTGCATG+TGG - chr6_1:7426982-7427001 Msa0872110:CDS 40.0%
AATGTGCTAGTGACCCAAAA+TGG - chr6_1:7427106-7427125 Msa0872110:CDS 40.0%
CAGTAACAACAATAGAGCCA+TGG + chr6_1:7427137-7427156 None:intergenic 40.0%
! CAGGTTGAGAGAGATCAAAA+TGG + chr6_1:7427206-7427225 None:intergenic 40.0%
TGAGCAATGTGTTGGAAAAC+AGG + chr6_1:7427225-7427244 None:intergenic 40.0%
GTAACTATGAAGCACGGATA+CGG - chr6_1:7427396-7427415 Msa0872110:intron 40.0%
GTAGAAGAAGAGGTGGAATA+AGG - chr6_1:7427667-7427686 Msa0872110:CDS 40.0%
TCTAGTCCTTGAACCTTTGA+TGG + chr6_1:7427772-7427791 None:intergenic 40.0%
TCAAAGGTTCAAGGACTAGA+TGG - chr6_1:7427772-7427791 Msa0872110:CDS 40.0%
CAAGGAATTGGGGACAAAAT+TGG - chr6_1:7427805-7427824 Msa0872110:CDS 40.0%
CTTTCATTTGTAGTCACCAC+CGG - chr6_1:7427858-7427877 Msa0872110:intron 40.0%
AATACTATGACCATTACCGG+TGG + chr6_1:7427877-7427896 None:intergenic 40.0%
TATATATGTCGATGTCGCGA+TGG + chr6_1:7428210-7428229 None:intergenic 40.0%
!!! GGCGCTTTAGTTTTTAACTG+AGG - chr6_1:7428389-7428408 Msa0872110:CDS 40.0%
GCCATGGACATATGAGATCA+AGG + chr6_1:7426441-7426460 None:intergenic 45.0%
CCCAATTTCTACCATAGCCA+TGG + chr6_1:7426457-7426476 None:intergenic 45.0%
GCTATGGTAGAAATTGGGGT+TGG - chr6_1:7426459-7426478 Msa0872110:three_prime_UTR 45.0%
AGTGATGCTTCTGGCACAAT+GGG - chr6_1:7426512-7426531 Msa0872110:three_prime_UTR 45.0%
CCGGTGAGACTTCTTATTCA+TGG - chr6_1:7426777-7426796 Msa0872110:three_prime_UTR 45.0%
! GGCTAGTTCAAGGTTCAACT+TGG - chr6_1:7426873-7426892 Msa0872110:CDS 45.0%
! TTGAACTGTCTGGTTCGCTT+CGG - chr6_1:7426896-7426915 Msa0872110:CDS 45.0%
! AGCCATGGAGACACCATTTT+GGG + chr6_1:7427122-7427141 None:intergenic 45.0%
ACCAGGTGGACAGAAATTAG+TGG + chr6_1:7427160-7427179 None:intergenic 45.0%
ACTAATTTCTGTCCACCTGG+TGG - chr6_1:7427159-7427178 Msa0872110:intron 45.0%
TATGAAGCAAGGACACTCCT+CGG + chr6_1:7427540-7427559 None:intergenic 45.0%
AGGGTAAGGTGTAGAAGAAG+AGG - chr6_1:7427657-7427676 Msa0872110:CDS 45.0%
GTAAGGTGTAGAAGAAGAGG+TGG - chr6_1:7427660-7427679 Msa0872110:CDS 45.0%
GTCCTTGTGACTAATGTTGG+AGG - chr6_1:7427723-7427742 Msa0872110:CDS 45.0%
CACCTCCAACATTAGTCACA+AGG + chr6_1:7427728-7427747 None:intergenic 45.0%
GTGCATTCTGTAGCCATCAA+AGG - chr6_1:7427756-7427775 Msa0872110:CDS 45.0%
CTGTAGCCATCAAAGGTTCA+AGG - chr6_1:7427763-7427782 Msa0872110:CDS 45.0%
GCAAGCCATGTCAAGGAATT+GGG - chr6_1:7427794-7427813 Msa0872110:CDS 45.0%
CAAGCCATGTCAAGGAATTG+GGG - chr6_1:7427795-7427814 Msa0872110:CDS 45.0%
TTGTCCCCAATTCCTTGACA+TGG + chr6_1:7427802-7427821 None:intergenic 45.0%
TTTGTAGTCACCACCGGTAA+TGG - chr6_1:7427864-7427883 Msa0872110:intron 45.0%
GTTTGTCCAAAGGACCAACT+GGG + chr6_1:7427921-7427940 None:intergenic 45.0%
TCCTTTGGACAAACCTACAC+TGG - chr6_1:7427927-7427946 Msa0872110:intron 45.0%
TCCAGTGTAGGTTTGTCCAA+AGG + chr6_1:7427931-7427950 None:intergenic 45.0%
TTGGACAAACCTACACTGGA+AGG - chr6_1:7427931-7427950 Msa0872110:intron 45.0%
ATGTATCTCACACGTGTCAG+TGG - chr6_1:7428040-7428059 Msa0872110:intron 45.0%
GGTGAGTCAACATCAAAGCT+GGG + chr6_1:7426196-7426215 None:intergenic 45.0%
AGGTGAGTCAACATCAAAGC+TGG + chr6_1:7426197-7426216 None:intergenic 45.0%
GCCATGGACATATGAGATCA+AGG + chr6_1:7426441-7426460 None:intergenic 45.0%
CCCAATTTCTACCATAGCCA+TGG + chr6_1:7426457-7426476 None:intergenic 45.0%
GCTATGGTAGAAATTGGGGT+TGG - chr6_1:7426459-7426478 Msa0872110:three_prime_UTR 45.0%
AGTGATGCTTCTGGCACAAT+GGG - chr6_1:7426512-7426531 Msa0872110:three_prime_UTR 45.0%
CCGGTGAGACTTCTTATTCA+TGG - chr6_1:7426777-7426796 Msa0872110:three_prime_UTR 45.0%
! GGCTAGTTCAAGGTTCAACT+TGG - chr6_1:7426873-7426892 Msa0872110:CDS 45.0%
! TTGAACTGTCTGGTTCGCTT+CGG - chr6_1:7426896-7426915 Msa0872110:CDS 45.0%
! AGCCATGGAGACACCATTTT+GGG + chr6_1:7427122-7427141 None:intergenic 45.0%
ACCAGGTGGACAGAAATTAG+TGG + chr6_1:7427160-7427179 None:intergenic 45.0%
ACTAATTTCTGTCCACCTGG+TGG - chr6_1:7427159-7427178 Msa0872110:intron 45.0%
TATGAAGCAAGGACACTCCT+CGG + chr6_1:7427540-7427559 None:intergenic 45.0%
AGGGTAAGGTGTAGAAGAAG+AGG - chr6_1:7427657-7427676 Msa0872110:CDS 45.0%
GTAAGGTGTAGAAGAAGAGG+TGG - chr6_1:7427660-7427679 Msa0872110:CDS 45.0%
GTCCTTGTGACTAATGTTGG+AGG - chr6_1:7427723-7427742 Msa0872110:CDS 45.0%
CACCTCCAACATTAGTCACA+AGG + chr6_1:7427728-7427747 None:intergenic 45.0%
GTGCATTCTGTAGCCATCAA+AGG - chr6_1:7427756-7427775 Msa0872110:CDS 45.0%
CTGTAGCCATCAAAGGTTCA+AGG - chr6_1:7427763-7427782 Msa0872110:CDS 45.0%
GCAAGCCATGTCAAGGAATT+GGG - chr6_1:7427794-7427813 Msa0872110:CDS 45.0%
CAAGCCATGTCAAGGAATTG+GGG - chr6_1:7427795-7427814 Msa0872110:CDS 45.0%
TTGTCCCCAATTCCTTGACA+TGG + chr6_1:7427802-7427821 None:intergenic 45.0%
TTTGTAGTCACCACCGGTAA+TGG - chr6_1:7427864-7427883 Msa0872110:intron 45.0%
GTTTGTCCAAAGGACCAACT+GGG + chr6_1:7427921-7427940 None:intergenic 45.0%
TCCTTTGGACAAACCTACAC+TGG - chr6_1:7427927-7427946 Msa0872110:intron 45.0%
TCCAGTGTAGGTTTGTCCAA+AGG + chr6_1:7427931-7427950 None:intergenic 45.0%
TTGGACAAACCTACACTGGA+AGG - chr6_1:7427931-7427950 Msa0872110:intron 45.0%
ATGTATCTCACACGTGTCAG+TGG - chr6_1:7428040-7428059 Msa0872110:intron 45.0%
GCACATGCAACCTTCTATGG+TGG - chr6_1:7426488-7426507 Msa0872110:three_prime_UTR 50.0%
AGCATCACTGCCACCATAGA+AGG + chr6_1:7426501-7426520 None:intergenic 50.0%
TATGGTGGCAGTGATGCTTC+TGG - chr6_1:7426503-7426522 Msa0872110:three_prime_UTR 50.0%
CAGTGATGCTTCTGGCACAA+TGG - chr6_1:7426511-7426530 Msa0872110:three_prime_UTR 50.0%
AACCAGACCAGACATCGAAC+CGG - chr6_1:7426758-7426777 Msa0872110:three_prime_UTR 50.0%
TCAGGTGGTGCATGTGGATA+TGG - chr6_1:7426988-7427007 Msa0872110:CDS 50.0%
GACCCAAAATGGTGTCTCCA+TGG - chr6_1:7427117-7427136 Msa0872110:CDS 50.0%
! GAGCCATGGAGACACCATTT+TGG + chr6_1:7427123-7427142 None:intergenic 50.0%
GCCACTAATTTCTGTCCACC+TGG - chr6_1:7427156-7427175 Msa0872110:intron 50.0%
ATTTCTGTCCACCTGGTGGT+TGG - chr6_1:7427163-7427182 Msa0872110:intron 50.0%
! GATTAGCTGTGTCCTGGTGT+CGG + chr6_1:7427518-7427537 None:intergenic 50.0%
! GTGACTAATGTTGGAGGTGC+TGG - chr6_1:7427729-7427748 Msa0872110:CDS 50.0%
CTAGATGGCAAGCCATGTCA+AGG - chr6_1:7427787-7427806 Msa0872110:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG - chr6_1:7427793-7427812 Msa0872110:CDS 50.0%
TTAATGTTGCCCCACCCAGT+TGG - chr6_1:7427904-7427923 Msa0872110:intron 50.0%
GGTTTGTCCAAAGGACCAAC+TGG + chr6_1:7427922-7427941 None:intergenic 50.0%
GCACATGCAACCTTCTATGG+TGG - chr6_1:7426488-7426507 Msa0872110:three_prime_UTR 50.0%
AGCATCACTGCCACCATAGA+AGG + chr6_1:7426501-7426520 None:intergenic 50.0%
TATGGTGGCAGTGATGCTTC+TGG - chr6_1:7426503-7426522 Msa0872110:three_prime_UTR 50.0%
CAGTGATGCTTCTGGCACAA+TGG - chr6_1:7426511-7426530 Msa0872110:three_prime_UTR 50.0%
AACCAGACCAGACATCGAAC+CGG - chr6_1:7426758-7426777 Msa0872110:three_prime_UTR 50.0%
TCAGGTGGTGCATGTGGATA+TGG - chr6_1:7426988-7427007 Msa0872110:CDS 50.0%
GACCCAAAATGGTGTCTCCA+TGG - chr6_1:7427117-7427136 Msa0872110:CDS 50.0%
! GAGCCATGGAGACACCATTT+TGG + chr6_1:7427123-7427142 None:intergenic 50.0%
GCCACTAATTTCTGTCCACC+TGG - chr6_1:7427156-7427175 Msa0872110:intron 50.0%
ATTTCTGTCCACCTGGTGGT+TGG - chr6_1:7427163-7427182 Msa0872110:intron 50.0%
! GATTAGCTGTGTCCTGGTGT+CGG + chr6_1:7427518-7427537 None:intergenic 50.0%
! GTGACTAATGTTGGAGGTGC+TGG - chr6_1:7427729-7427748 Msa0872110:CDS 50.0%
CTAGATGGCAAGCCATGTCA+AGG - chr6_1:7427787-7427806 Msa0872110:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG - chr6_1:7427793-7427812 Msa0872110:CDS 50.0%
TTAATGTTGCCCCACCCAGT+TGG - chr6_1:7427904-7427923 Msa0872110:intron 50.0%
GGTTTGTCCAAAGGACCAAC+TGG + chr6_1:7427922-7427941 None:intergenic 50.0%
!! AGTCTCACCGGTTCGATGTC+TGG + chr6_1:7426768-7426787 None:intergenic 55.0%
GCACGGATACGGACACAACA+CGG - chr6_1:7427407-7427426 Msa0872110:intron 55.0%
ACCAGGACACAGCTAATCCG+AGG - chr6_1:7427520-7427539 Msa0872110:intron 55.0%
!! TCCTCGGATTAGCTGTGTCC+TGG + chr6_1:7427524-7427543 None:intergenic 55.0%
TCCAAAGGACCAACTGGGTG+GGG + chr6_1:7427916-7427935 None:intergenic 55.0%
GTCCAAAGGACCAACTGGGT+GGG + chr6_1:7427917-7427936 None:intergenic 55.0%
TGTCCAAAGGACCAACTGGG+TGG + chr6_1:7427918-7427937 None:intergenic 55.0%
GAGGAACTGCCTTCCAGTGT+AGG + chr6_1:7427943-7427962 None:intergenic 55.0%
TCTCACACGTGTCAGTGGAG+CGG - chr6_1:7428045-7428064 Msa0872110:intron 55.0%
!! AGTCTCACCGGTTCGATGTC+TGG + chr6_1:7426768-7426787 None:intergenic 55.0%
GCACGGATACGGACACAACA+CGG - chr6_1:7427407-7427426 Msa0872110:intron 55.0%
ACCAGGACACAGCTAATCCG+AGG - chr6_1:7427520-7427539 Msa0872110:intron 55.0%
!! TCCTCGGATTAGCTGTGTCC+TGG + chr6_1:7427524-7427543 None:intergenic 55.0%
TCCAAAGGACCAACTGGGTG+GGG + chr6_1:7427916-7427935 None:intergenic 55.0%
GTCCAAAGGACCAACTGGGT+GGG + chr6_1:7427917-7427936 None:intergenic 55.0%
TGTCCAAAGGACCAACTGGG+TGG + chr6_1:7427918-7427937 None:intergenic 55.0%
GAGGAACTGCCTTCCAGTGT+AGG + chr6_1:7427943-7427962 None:intergenic 55.0%
TCTCACACGTGTCAGTGGAG+CGG - chr6_1:7428045-7428064 Msa0872110:intron 55.0%
!! CACCGGTTCGATGTCTGGTC+TGG + chr6_1:7426763-7426782 None:intergenic 60.0%
! GTGTCAGTGTCGGACACGAC+AGG - chr6_1:7427489-7427508 Msa0872110:intron 60.0%
!! CACCGGTTCGATGTCTGGTC+TGG + chr6_1:7426763-7426782 None:intergenic 60.0%
! GTGTCAGTGTCGGACACGAC+AGG - chr6_1:7427489-7427508 Msa0872110:intron 60.0%
GGGTCACACCAACCACCAGG+TGG + chr6_1:7427174-7427193 None:intergenic 65.0%
GGAGGGTCACACCAACCACC+AGG + chr6_1:7427177-7427196 None:intergenic 65.0%
CACGACAGGTGTCCGACACC+AGG - chr6_1:7427503-7427522 Msa0872110:intron 65.0%
GCCCCACCCAGTTGGTCCTT+TGG - chr6_1:7427912-7427931 Msa0872110:intron 65.0%
GGGTCACACCAACCACCAGG+TGG + chr6_1:7427174-7427193 None:intergenic 65.0%
GGAGGGTCACACCAACCACC+AGG + chr6_1:7427177-7427196 None:intergenic 65.0%
CACGACAGGTGTCCGACACC+AGG - chr6_1:7427503-7427522 Msa0872110:intron 65.0%
GCCCCACCCAGTTGGTCCTT+TGG - chr6_1:7427912-7427931 Msa0872110:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 7426195 7428632 7426195 ID=Msa0872110;Name=Msa0872110
chr6_1 mRNA 7426195 7428632 7426195 ID=Msa0872110-mRNA-1;Parent=Msa0872110;Name=Msa0872110-mRNA-1;_AED=0.29;_eAED=0.29;_QI=92|1|1|1|0.5|0.2|5|644|244
chr6_1 exon 7426195 7426333 7426195 ID=Msa0872110-mRNA-1:exon:2233;Parent=Msa0872110-mRNA-1
chr6_1 exon 7426354 7427168 7426354 ID=Msa0872110-mRNA-1:exon:2232;Parent=Msa0872110-mRNA-1
chr6_1 exon 7427547 7427835 7427547 ID=Msa0872110-mRNA-1:exon:2231;Parent=Msa0872110-mRNA-1
chr6_1 exon 7428294 7428434 7428294 ID=Msa0872110-mRNA-1:exon:2230;Parent=Msa0872110-mRNA-1
chr6_1 exon 7428546 7428632 7428546 ID=Msa0872110-mRNA-1:exon:2229;Parent=Msa0872110-mRNA-1
chr6_1 five_prime_UTR 7428546 7428632 7428546 ID=Msa0872110-mRNA-1:five_prime_utr;Parent=Msa0872110-mRNA-1
chr6_1 five_prime_UTR 7428430 7428434 7428430 ID=Msa0872110-mRNA-1:five_prime_utr;Parent=Msa0872110-mRNA-1
chr6_1 CDS 7428294 7428429 7428294 ID=Msa0872110-mRNA-1:cds;Parent=Msa0872110-mRNA-1
chr6_1 CDS 7427547 7427835 7427547 ID=Msa0872110-mRNA-1:cds;Parent=Msa0872110-mRNA-1
chr6_1 CDS 7426859 7427168 7426859 ID=Msa0872110-mRNA-1:cds;Parent=Msa0872110-mRNA-1
chr6_1 three_prime_UTR 7426354 7426858 7426354 ID=Msa0872110-mRNA-1:three_prime_utr;Parent=Msa0872110-mRNA-1
chr6_1 three_prime_UTR 7426195 7426333 7426195 ID=Msa0872110-mRNA-1:three_prime_utr;Parent=Msa0872110-mRNA-1
Gene Sequence

>Msa0872110

ATGTCTCATTTAGGCTTTCTTGTTCTAGGAATTATTTTCTCCTTGATCTCATATGTCCATGGCTATGGTAGAAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGTGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATGAAATTAAATGTGCTAGTGACCCAAAATGGTGTCTCCATGGCTCTATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGTAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACCACCGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA

Protein sequence

>Msa0872110

MSHLGFLVLGIIFSLISYVHGYGRNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCASDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY*