Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877840 | XP_003618910.1 | 80.112 | 357 | 19 | 6 | 31 | 371 | 1 | 321 | 2.96e-176 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877840 | sp|Q9LES3|AI5L2_ARATH | 52.161 | 347 | 110 | 7 | 31 | 371 | 1 | 297 | 2.18e-96 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877840 | G7KP64 | 80.112 | 357 | 19 | 6 | 31 | 371 | 1 | 321 | 1.41e-176 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0877840 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0315980 | Msa0877840 | 0.814625 | 1.400410e-51 | -8.615850e-47 |
| Msa0877840 | Msa0943440 | 0.909063 | 8.613829e-82 | -8.615850e-47 |
| Msa0877840 | Msa0980140 | 0.845679 | 3.493976e-59 | -8.615850e-47 |
| Msa0877840 | Msa1085930 | 0.807576 | 4.724988e-50 | -8.615850e-47 |
| Msa0877840 | Msa1216360 | 0.808138 | 3.587738e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877840 | MtrunA17_Chr6g0460301 | 80.112 | 357 | 19 | 6 | 31 | 371 | 1 | 321 | 2.72e-180 | 503 |
| Msa0877840 | MtrunA17_Chr7g0254991 | 55.402 | 361 | 100 | 11 | 31 | 371 | 1 | 320 | 4.88e-107 | 317 |
| Msa0877840 | MtrunA17_Chr8g0355121 | 48.012 | 327 | 132 | 4 | 46 | 371 | 24 | 313 | 4.44e-85 | 260 |
| Msa0877840 | MtrunA17_Chr3g0080341 | 45.028 | 362 | 138 | 8 | 31 | 371 | 1 | 322 | 2.44e-83 | 256 |
| Msa0877840 | MtrunA17_Chr4g0044771 | 34.897 | 341 | 144 | 9 | 46 | 316 | 18 | 350 | 4.18e-43 | 154 |
| Msa0877840 | MtrunA17_Chr5g0440841 | 35.277 | 343 | 141 | 7 | 31 | 371 | 6 | 269 | 6.13e-38 | 137 |
| Msa0877840 | MtrunA17_Chr3g0133971 | 48.649 | 148 | 69 | 4 | 32 | 179 | 14 | 154 | 1.43e-29 | 118 |
| Msa0877840 | MtrunA17_Chr3g0133971 | 46.078 | 102 | 47 | 2 | 217 | 311 | 296 | 396 | 1.97e-16 | 80.5 |
| Msa0877840 | MtrunA17_Chr2g0321411 | 34.657 | 277 | 130 | 11 | 50 | 310 | 12 | 253 | 2.11e-29 | 115 |
| Msa0877840 | MtrunA17_Chr2g0321381 | 37.011 | 281 | 139 | 11 | 48 | 310 | 24 | 284 | 1.67e-26 | 107 |
| Msa0877840 | MtrunA17_Chr7g0266211 | 37.313 | 134 | 66 | 2 | 52 | 167 | 45 | 178 | 1.17e-17 | 84.0 |
| Msa0877840 | MtrunA17_Chr5g0424871 | 29.110 | 292 | 154 | 10 | 46 | 289 | 12 | 298 | 1.29e-16 | 79.7 |
| Msa0877840 | MtrunA17_Chr5g0405951 | 64.912 | 57 | 8 | 1 | 267 | 311 | 166 | 222 | 5.52e-12 | 65.1 |
| Msa0877840 | MtrunA17_Chr4g0051101 | 32.716 | 162 | 47 | 4 | 152 | 313 | 77 | 176 | 3.11e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877840 | AT3G56850.1 | 52.161 | 347 | 110 | 7 | 31 | 371 | 1 | 297 | 2.22e-97 | 291 |
| Msa0877840 | AT2G41070.4 | 46.491 | 342 | 102 | 9 | 31 | 371 | 10 | 271 | 5.75e-76 | 236 |
| Msa0877840 | AT2G41070.3 | 46.491 | 342 | 102 | 9 | 31 | 371 | 1 | 262 | 7.75e-76 | 235 |
| Msa0877840 | AT2G41070.1 | 46.491 | 342 | 102 | 9 | 31 | 371 | 1 | 262 | 7.75e-76 | 235 |
| Msa0877840 | AT2G41070.2 | 46.491 | 342 | 102 | 9 | 31 | 371 | 1 | 262 | 7.75e-76 | 235 |
| Msa0877840 | AT2G41070.5 | 50.534 | 281 | 91 | 8 | 31 | 310 | 1 | 234 | 9.64e-69 | 216 |
| Msa0877840 | AT3G44460.1 | 39.789 | 284 | 125 | 10 | 45 | 309 | 34 | 290 | 4.15e-32 | 123 |
| Msa0877840 | AT1G49720.1 | 47.945 | 146 | 59 | 3 | 35 | 167 | 12 | 153 | 3.73e-29 | 117 |
| Msa0877840 | AT1G49720.1 | 60.656 | 61 | 23 | 1 | 251 | 311 | 297 | 356 | 2.06e-12 | 68.2 |
| Msa0877840 | AT1G49720.3 | 47.945 | 146 | 59 | 3 | 35 | 167 | 12 | 153 | 3.73e-29 | 117 |
| Msa0877840 | AT1G49720.3 | 60.656 | 61 | 23 | 1 | 251 | 311 | 297 | 356 | 2.06e-12 | 68.2 |
| Msa0877840 | AT1G49720.2 | 47.945 | 146 | 59 | 3 | 35 | 167 | 12 | 153 | 4.39e-29 | 117 |
| Msa0877840 | AT1G49720.2 | 60.656 | 61 | 23 | 1 | 251 | 311 | 297 | 356 | 1.67e-12 | 68.6 |
| Msa0877840 | AT3G19290.4 | 45.070 | 142 | 60 | 2 | 44 | 167 | 32 | 173 | 3.51e-26 | 108 |
| Msa0877840 | AT3G19290.4 | 56.364 | 55 | 24 | 0 | 262 | 316 | 347 | 401 | 6.95e-13 | 69.7 |
| Msa0877840 | AT3G19290.2 | 45.070 | 142 | 60 | 2 | 44 | 167 | 32 | 173 | 3.57e-26 | 108 |
| Msa0877840 | AT3G19290.3 | 45.070 | 142 | 60 | 2 | 44 | 167 | 32 | 173 | 4.23e-26 | 108 |
| Msa0877840 | AT3G19290.3 | 59.615 | 52 | 21 | 0 | 262 | 313 | 347 | 398 | 1.18e-12 | 69.3 |
| Msa0877840 | AT3G19290.1 | 45.070 | 142 | 60 | 2 | 44 | 167 | 32 | 173 | 4.31e-26 | 108 |
| Msa0877840 | AT3G19290.1 | 59.615 | 52 | 21 | 0 | 262 | 313 | 347 | 398 | 1.16e-12 | 69.3 |
| Msa0877840 | AT3G19290.5 | 45.070 | 142 | 60 | 2 | 44 | 167 | 32 | 173 | 4.31e-26 | 108 |
| Msa0877840 | AT3G19290.5 | 59.615 | 52 | 21 | 0 | 262 | 313 | 347 | 398 | 1.16e-12 | 69.3 |
| Msa0877840 | AT1G45249.3 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 8.56e-20 | 90.5 |
| Msa0877840 | AT1G45249.3 | 58.730 | 63 | 15 | 1 | 262 | 313 | 332 | 394 | 6.35e-13 | 70.1 |
| Msa0877840 | AT1G45249.1 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 9.27e-20 | 90.5 |
| Msa0877840 | AT1G45249.1 | 71.154 | 52 | 15 | 0 | 262 | 313 | 332 | 383 | 9.63e-16 | 78.6 |
| Msa0877840 | AT1G45249.7 | 42.683 | 164 | 62 | 7 | 46 | 184 | 36 | 192 | 9.55e-20 | 90.5 |
| Msa0877840 | AT1G45249.7 | 71.154 | 52 | 15 | 0 | 262 | 313 | 347 | 398 | 1.31e-15 | 78.2 |
| Msa0877840 | AT1G45249.6 | 42.683 | 164 | 62 | 7 | 46 | 184 | 36 | 192 | 9.55e-20 | 90.5 |
| Msa0877840 | AT1G45249.6 | 71.154 | 52 | 15 | 0 | 262 | 313 | 347 | 398 | 1.31e-15 | 78.2 |
| Msa0877840 | AT1G45249.10 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 1.11e-19 | 89.7 |
| Msa0877840 | AT1G45249.5 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 1.11e-19 | 89.7 |
| Msa0877840 | AT1G45249.4 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 1.36e-19 | 90.1 |
| Msa0877840 | AT1G45249.8 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 1.36e-19 | 90.1 |
| Msa0877840 | AT1G45249.2 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 1.36e-19 | 90.1 |
| Msa0877840 | AT1G45249.9 | 42.683 | 164 | 62 | 7 | 46 | 184 | 21 | 177 | 1.36e-19 | 90.1 |
| Msa0877840 | AT4G34000.1 | 39.024 | 164 | 61 | 6 | 43 | 167 | 24 | 187 | 1.88e-19 | 89.7 |
| Msa0877840 | AT4G34000.1 | 50.000 | 86 | 40 | 2 | 251 | 336 | 358 | 440 | 1.42e-15 | 78.2 |
| Msa0877840 | AT4G34000.4 | 39.024 | 164 | 61 | 6 | 43 | 167 | 24 | 187 | 1.88e-19 | 89.7 |
| Msa0877840 | AT4G34000.4 | 50.000 | 86 | 40 | 2 | 251 | 336 | 358 | 440 | 1.42e-15 | 78.2 |
| Msa0877840 | AT4G34000.2 | 39.024 | 164 | 61 | 6 | 43 | 167 | 24 | 187 | 1.88e-19 | 89.7 |
| Msa0877840 | AT4G34000.2 | 50.000 | 86 | 40 | 2 | 251 | 336 | 358 | 440 | 1.42e-15 | 78.2 |
| Msa0877840 | AT4G34000.3 | 39.024 | 164 | 61 | 6 | 43 | 167 | 24 | 187 | 1.89e-19 | 89.7 |
| Msa0877840 | AT4G34000.3 | 62.295 | 61 | 22 | 1 | 251 | 311 | 358 | 417 | 1.21e-15 | 78.6 |
| Msa0877840 | AT5G44080.1 | 33.333 | 198 | 84 | 8 | 121 | 311 | 120 | 276 | 8.23e-16 | 77.8 |
| Msa0877840 | AT2G36270.1 | 70.690 | 58 | 16 | 1 | 252 | 309 | 342 | 398 | 1.18e-15 | 78.6 |
| Msa0877840 | AT2G36270.2 | 70.690 | 58 | 16 | 1 | 252 | 309 | 342 | 398 | 1.18e-15 | 78.6 |
| Msa0877840 | AT2G36270.3 | 70.690 | 58 | 16 | 1 | 252 | 309 | 342 | 398 | 1.26e-15 | 78.2 |
| Msa0877840 | AT4G35900.1 | 46.875 | 96 | 38 | 3 | 216 | 311 | 177 | 259 | 1.44e-14 | 73.9 |
| Msa0877840 | AT1G03970.1 | 30.729 | 192 | 88 | 7 | 121 | 311 | 85 | 232 | 2.01e-13 | 70.1 |
| Msa0877840 | AT5G42910.1 | 38.400 | 125 | 57 | 3 | 46 | 166 | 20 | 128 | 3.83e-13 | 70.5 |
| Msa0877840 | AT2G17770.2 | 71.111 | 45 | 13 | 0 | 267 | 311 | 125 | 169 | 1.01e-12 | 67.0 |
Find 99 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACCATCTTGGTAATTT+AGG | 0.046059 | 6_1:-17941123 | Msa0877840:CDS |
| AATATATTTGAGTCTAATTT+TGG | 0.122132 | 6_1:-17937968 | Msa0877840:three_prime_UTR |
| ATCAGAATGCCCTGCACTTT+TGG | 0.199358 | 6_1:-17939317 | Msa0877840:CDS |
| CACAAACACTAGGTCGAAAA+AGG | 0.215282 | 6_1:-17940018 | Msa0877840:CDS |
| AAAACCATCTTGGTAATTTA+GGG | 0.238621 | 6_1:-17941122 | Msa0877840:CDS |
| CAAGGGAGTTTAGCATTATC+TGG | 0.253390 | 6_1:-17940979 | Msa0877840:CDS |
| GCTGGCGAGGTTTCGGATTT+CGG | 0.287074 | 6_1:-17941042 | Msa0877840:CDS |
| TTTAAAGGGTGGTTGAAAAT+TGG | 0.288161 | 6_1:+17941553 | None:intergenic |
| GATGACTTTGGAGGATTTCT+TGG | 0.296873 | 6_1:-17940848 | Msa0877840:CDS |
| GGAAGAAGAGGGGTGTTGAT+AGG | 0.304171 | 6_1:-17940909 | Msa0877840:CDS |
| TGAGATTGATTTCACTTTCC+AGG | 0.310878 | 6_1:-17941453 | Msa0877840:intron |
| TGTTGAAGCTGGCGAGGTTT+CGG | 0.333824 | 6_1:-17941049 | Msa0877840:CDS |
| GAACAAGTTTCTTTGATGTT+TGG | 0.353084 | 6_1:+17941481 | None:intergenic |
| TTTCGCAACATGGTCTTCAT+TGG | 0.353409 | 6_1:-17940732 | Msa0877840:CDS |
| AGGATGATGGTGGTTTGTTA+AGG | 0.362877 | 6_1:-17940786 | Msa0877840:CDS |
| CAAAGACTTTACCTTTATAT+AGG | 0.373132 | 6_1:-17941182 | Msa0877840:CDS |
| GGCTCGGGTGGTGGCGCAGT+TGG | 0.406451 | 6_1:+17938368 | None:intergenic |
| ACAAGTTCCGTTACAGTTGA+AGG | 0.412551 | 6_1:-17938229 | Msa0877840:three_prime_UTR |
| AAAGATCCTGACCTATATAA+AGG | 0.412553 | 6_1:+17941171 | None:intergenic |
| GAGGATTTCTTGGTGAAAGC+TGG | 0.421412 | 6_1:-17940838 | Msa0877840:CDS |
| GGATGATGGTGGTTTGTTAA+GGG | 0.422756 | 6_1:-17940785 | Msa0877840:CDS |
| GAAGAAGAGGGGTGTTGATA+GGG | 0.424019 | 6_1:-17940908 | Msa0877840:CDS |
| GTAGTTCGGTTGGTAAGTTA+AGG | 0.426810 | 6_1:+17938028 | None:intergenic |
| TGATTCCCGGCAACCTGAAA+AGG | 0.430801 | 6_1:+17940616 | None:intergenic |
| GATGAAGTTCAAAACCATCT+TGG | 0.441683 | 6_1:-17941132 | Msa0877840:CDS |
| TCAGACTCGCGTAAGTAGTT+CGG | 0.443352 | 6_1:+17938014 | None:intergenic |
| ACTTTACCTTTATATAGGTC+AGG | 0.446252 | 6_1:-17941177 | Msa0877840:CDS |
| TTGGTGAAAGCTGGAGTTGT+TGG | 0.447659 | 6_1:-17940829 | Msa0877840:CDS |
| TTTGAACCCGAGACCTCCTT+CGG | 0.453435 | 6_1:-17938055 | Msa0877840:three_prime_UTR |
| AGTGATGTTGCTGCTGCTGC+TGG | 0.458315 | 6_1:-17941015 | Msa0877840:CDS |
| AAACTATGATCCTGTGTTTG+TGG | 0.458577 | 6_1:-17941639 | Msa0877840:five_prime_UTR |
| TAGTTCGGTTGGTAAGTTAA+GGG | 0.458943 | 6_1:+17938029 | None:intergenic |
| TTTCATAACAATAAGGATGA+TGG | 0.459884 | 6_1:-17940799 | Msa0877840:CDS |
| GCAGGCTTATACACAAGAAC+TGG | 0.460547 | 6_1:-17939797 | Msa0877840:intron |
| AGGGACACCGAAGGAGGTCT+CGG | 0.462239 | 6_1:+17938048 | None:intergenic |
| TTGATTCGAATGAGGATTCT+CGG | 0.469255 | 6_1:-17940762 | Msa0877840:CDS |
| CGGCAAAATGTTTCGCAACA+TGG | 0.482638 | 6_1:-17940742 | Msa0877840:CDS |
| AAAACTCCCACACCTTCAAC+AGG | 0.485284 | 6_1:-17940055 | Msa0877840:CDS |
| TCTTCATTGGATGCAATATC+CGG | 0.491078 | 6_1:-17940719 | Msa0877840:CDS |
| TGCAATCAATTCTCCACAGC+AGG | 0.494932 | 6_1:-17938186 | Msa0877840:three_prime_UTR |
| TCTGATAATGTACCTGTTGA+AGG | 0.496606 | 6_1:+17940043 | None:intergenic |
| GGATTTCAAGCAATGAGAGT+TGG | 0.498667 | 6_1:-17939358 | Msa0877840:CDS |
| GACACTTGGTGAGATGACTT+TGG | 0.498834 | 6_1:-17940860 | Msa0877840:CDS |
| GTTTCCCTAAATTACCAAGA+TGG | 0.502080 | 6_1:+17941118 | None:intergenic |
| TGACATAATCCCAAAAGTGC+AGG | 0.504640 | 6_1:+17939307 | None:intergenic |
| GTTGCAATGAAGACATCAAA+AGG | 0.505109 | 6_1:+17938313 | None:intergenic |
| GAGCAAGATCAGCGTTCAAA+GGG | 0.507712 | 6_1:+17941592 | None:intergenic |
| CTGTCGAGAGGAGGCAAAAG+AGG | 0.507973 | 6_1:-17939967 | Msa0877840:CDS |
| AGAGGGGTGTTGATAGGGAT+AGG | 0.509576 | 6_1:-17940903 | Msa0877840:CDS |
| GCATGAACTGCCGCAAAACC+CGG | 0.510299 | 6_1:+17940649 | None:intergenic |
| GTATGAAAAGCATATGATGC+CGG | 0.511392 | 6_1:-17940668 | Msa0877840:CDS |
| GTTAAGGGTTGATTCGAATG+AGG | 0.514656 | 6_1:-17940770 | Msa0877840:CDS |
| GTTAGTAAAGTCACATATGT+AGG | 0.515424 | 6_1:+17937944 | None:intergenic |
| TTGAAAAGGGATTTAAAGGG+TGG | 0.520750 | 6_1:+17941542 | None:intergenic |
| GTTTATTTAGACAGAGTGGT+TGG | 0.521148 | 6_1:-17939379 | Msa0877840:intron |
| TAAAGTTTCGCGTTTAGAAG+AGG | 0.534492 | 6_1:-17939770 | Msa0877840:CDS |
| AACCTGAAAAGGCTGTTGAA+TGG | 0.537317 | 6_1:+17940627 | None:intergenic |
| AGATATGCAAGGGAAGAAGA+GGG | 0.542486 | 6_1:-17940920 | Msa0877840:CDS |
| TCAAGCAATGAGAGTTGGAA+TGG | 0.545668 | 6_1:-17939353 | Msa0877840:CDS |
| AGAGCAAGATCAGCGTTCAA+AGG | 0.546715 | 6_1:+17941591 | None:intergenic |
| GGGACACCGAAGGAGGTCTC+GGG | 0.548089 | 6_1:+17938049 | None:intergenic |
| AAGATATGCAAGGGAAGAAG+AGG | 0.548251 | 6_1:-17940921 | Msa0877840:CDS |
| ACTTGGTGAGATGACTTTGG+AGG | 0.554555 | 6_1:-17940857 | Msa0877840:CDS |
| ACAACTACCTTCAACTGTAA+CGG | 0.555695 | 6_1:+17938222 | None:intergenic |
| GTTGTCACAGGAGATAGAGA+AGG | 0.566153 | 6_1:-17938396 | Msa0877840:intron |
| CATAACAATAAGGATGATGG+TGG | 0.567397 | 6_1:-17940796 | Msa0877840:CDS |
| GATGTTGCTGCTGCTGCTGG+TGG | 0.578204 | 6_1:-17941012 | Msa0877840:CDS |
| TATGAAAAGCATATGATGCC+GGG | 0.578298 | 6_1:-17940667 | Msa0877840:CDS |
| GTTGTTGCTGCTGAACAGAA+TGG | 0.584868 | 6_1:+17940695 | None:intergenic |
| GGTAATTTAGGGAAACCACT+TGG | 0.595722 | 6_1:-17941111 | Msa0877840:CDS |
| TCGTTCACGAGCAAGAAGAC+AGG | 0.598431 | 6_1:-17939918 | Msa0877840:intron |
| TAGTAAGAAAACTGTTGATG+AGG | 0.605589 | 6_1:-17940950 | Msa0877840:CDS |
| AGAAAACTGTTGATGAGGTG+TGG | 0.606026 | 6_1:-17940945 | Msa0877840:CDS |
| AATAGATGCTCCACAAACAC+AGG | 0.607133 | 6_1:+17941629 | None:intergenic |
| AGGTGTGGAAAGATATGCAA+GGG | 0.611551 | 6_1:-17940930 | Msa0877840:CDS |
| GATATGCAAGGGAAGAAGAG+GGG | 0.613310 | 6_1:-17940919 | Msa0877840:CDS |
| AGTGTGTGGAGTGTTGAAGC+TGG | 0.616392 | 6_1:-17941060 | Msa0877840:CDS |
| GACATAATCCCAAAAGTGCA+GGG | 0.618661 | 6_1:+17939308 | None:intergenic |
| ATGAGTTGCTTAAGAGTGTG+TGG | 0.618901 | 6_1:-17941074 | Msa0877840:CDS |
| TAGAGAAAACTGTCGAGAGG+AGG | 0.623550 | 6_1:-17939976 | Msa0877840:CDS |
| TGCTGCTGAACAGAATGGAC+CGG | 0.626230 | 6_1:+17940700 | None:intergenic |
| TAGTAGAGAAAACTGTCGAG+AGG | 0.627657 | 6_1:-17939979 | Msa0877840:CDS |
| ACTCGCGTAAGTAGTTCGGT+TGG | 0.628074 | 6_1:+17938018 | None:intergenic |
| GTCACAGGAGATAGAGAAGG+AGG | 0.631775 | 6_1:-17938393 | Msa0877840:intron |
| TAATGTACCTGTTGAAGGTG+TGG | 0.633430 | 6_1:+17940048 | None:intergenic |
| TTTCTCTACTAAAATACCAG+AGG | 0.634525 | 6_1:+17939991 | None:intergenic |
| GTGGAGTGTTGAAGCTGGCG+AGG | 0.635886 | 6_1:-17941055 | Msa0877840:CDS |
| AATGTACCTGTTGAAGGTGT+GGG | 0.643615 | 6_1:+17940049 | None:intergenic |
| GCTGGTGGTTTGAATTCACA+AGG | 0.646172 | 6_1:-17940997 | Msa0877840:CDS |
| TCAAGATTCATACTTCCAAG+TGG | 0.648117 | 6_1:+17941096 | None:intergenic |
| GTTTAGAAGAGGAAAATGAA+AGG | 0.656611 | 6_1:-17939759 | Msa0877840:CDS |
| AAGTTAAGGGACACCGAAGG+AGG | 0.667902 | 6_1:+17938042 | None:intergenic |
| TTATCAGATACACAAACACT+AGG | 0.668593 | 6_1:-17940028 | Msa0877840:CDS |
| TAGTAGAATAGAGCCTGCTG+TGG | 0.689343 | 6_1:+17938173 | None:intergenic |
| GGCGAGGTTTCGGATTTCGG+CGG | 0.691722 | 6_1:-17941039 | Msa0877840:CDS |
| GGTAAGTTAAGGGACACCGA+AGG | 0.712130 | 6_1:+17938039 | None:intergenic |
| AGGATGCTGAATTAGTTCTG+CGG | 0.716972 | 6_1:+17938333 | None:intergenic |
| CTGGTGGTTTGAATTCACAA+GGG | 0.722890 | 6_1:-17940996 | Msa0877840:CDS |
| GAGGTGTGGAAAGATATGCA+AGG | 0.743009 | 6_1:-17940931 | Msa0877840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAAAAAGATGAAATA+AGG | - | chr6_1:17939207-17939226 | Msa0877840:intron | 15.0% |
| !! | CCTTCAAAAAAAAATATTTA+GGG | + | chr6_1:17939409-17939428 | None:intergenic | 15.0% |
| !! | TCCTTCAAAAAAAAATATTT+AGG | + | chr6_1:17939410-17939429 | None:intergenic | 15.0% |
| !!! | AGAATATTATTGATAATAAC+TGG | + | chr6_1:17939479-17939498 | None:intergenic | 15.0% |
| !! | GTTATTATCAATAATATTCT+AGG | - | chr6_1:17939479-17939498 | Msa0877840:intron | 15.0% |
| !!! | AAAAAGAAAGAAAATTTTCT+TGG | - | chr6_1:17939979-17939998 | Msa0877840:CDS | 15.0% |
| !!! | AAAAGAAAGAAAATTTTCTT+GGG | - | chr6_1:17939980-17939999 | Msa0877840:CDS | 15.0% |
| !!! | TAAAGATTTTATATTTCCTT+TGG | - | chr6_1:17940156-17940175 | Msa0877840:intron | 15.0% |
| !!! | ATTACTTTTGAATATTGAAT+CGG | + | chr6_1:17940345-17940364 | None:intergenic | 15.0% |
| !! | TTATAGATATATATCTTCAA+GGG | + | chr6_1:17940564-17940583 | None:intergenic | 15.0% |
| !!! | AATATATTTGAGTCTAATTT+TGG | - | chr6_1:17941597-17941616 | Msa0877840:five_prime_UTR | 15.0% |
| !!! | TTTTTGAAAAGGGATTTAAA+GGG | + | chr6_1:17938029-17938048 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAAAGGGATTTAA+AGG | + | chr6_1:17938030-17938049 | None:intergenic | 20.0% |
| !! | AAATTGTACCAAAAACAAAA+GGG | + | chr6_1:17938153-17938172 | None:intergenic | 20.0% |
| !! | AAAATTGTACCAAAAACAAA+AGG | + | chr6_1:17938154-17938173 | None:intergenic | 20.0% |
| !!! | TTCTTTGAAACTTTGTTTTT+TGG | - | chr6_1:17938209-17938228 | Msa0877840:three_prime_UTR | 20.0% |
| !! | AATCTACTTTAATCTGTATT+TGG | + | chr6_1:17938262-17938281 | None:intergenic | 20.0% |
| !!! | TACAGATTAAAGTAGATTTT+TGG | - | chr6_1:17938264-17938283 | Msa0877840:three_prime_UTR | 20.0% |
| !!! | TGATTTTGAAATAGAGTTAT+AGG | - | chr6_1:17938304-17938323 | Msa0877840:three_prime_UTR | 20.0% |
| !!! | TGAATCTTTTCATAACAATA+AGG | - | chr6_1:17938759-17938778 | Msa0877840:intron | 20.0% |
| !!! | AATATCTTACTTTATTTCCT+AGG | - | chr6_1:17939064-17939083 | Msa0877840:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | + | chr6_1:17939147-17939166 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | + | chr6_1:17939148-17939167 | None:intergenic | 20.0% |
| !!! | CCCTAAATATTTTTTTTTGA+AGG | - | chr6_1:17939406-17939425 | Msa0877840:intron | 20.0% |
| !!! | AGCTTTATACAAAAGATTAA+GGG | + | chr6_1:17939440-17939459 | None:intergenic | 20.0% |
| !! | AAAAGAGGATGATAAAAAAT+AGG | - | chr6_1:17939613-17939632 | Msa0877840:intron | 20.0% |
| !! | AAAGAGGATGATAAAAAATA+GGG | - | chr6_1:17939614-17939633 | Msa0877840:intron | 20.0% |
| !! | AAAAGAATACATATTCATGA+AGG | + | chr6_1:17939857-17939876 | None:intergenic | 20.0% |
| !!! | CTATAACTTTCTAAGATATT+AGG | + | chr6_1:17940123-17940142 | None:intergenic | 20.0% |
| !! | GTTATAGATATATATCTTCA+AGG | + | chr6_1:17940565-17940584 | None:intergenic | 20.0% |
| !!! | TTTCTTGTTTGTTGATTTTT+CGG | - | chr6_1:17940747-17940766 | Msa0877840:CDS | 20.0% |
| !! | AAAATAGAGTTATATAGCTT+AGG | + | chr6_1:17940880-17940899 | None:intergenic | 20.0% |
| !!! | AAGCTATATAACTCTATTTT+AGG | - | chr6_1:17940880-17940899 | Msa0877840:CDS | 20.0% |
| !!! | TTTCTTTTCGATAAAATTCT+AGG | - | chr6_1:17941010-17941029 | Msa0877840:CDS | 20.0% |
| !!! | CTATCTAGAATGATATTTTA+TGG | + | chr6_1:17941122-17941141 | None:intergenic | 20.0% |
| !! | TGATATCATGAAAAAGAATA+AGG | + | chr6_1:17941283-17941302 | None:intergenic | 20.0% |
| !!! | CTTATTTTATAGACAAATGT+TGG | - | chr6_1:17941459-17941478 | Msa0877840:CDS | 20.0% |
| !!! | ATCTTGCTCTTTTTTCTTTT+TGG | - | chr6_1:17937987-17938006 | Msa0877840:three_prime_UTR | 25.0% |
| !!! | TCTTGCTCTTTTTTCTTTTT+GGG | - | chr6_1:17937988-17938007 | Msa0877840:three_prime_UTR | 25.0% |
| !!! | AAGCATGCATTTTTTGAAAA+GGG | + | chr6_1:17938039-17938058 | None:intergenic | 25.0% |
| !!! | AAAGCATGCATTTTTTGAAA+AGG | + | chr6_1:17938040-17938059 | None:intergenic | 25.0% |
| !!! | TATTCAAACCCTTTTGTTTT+TGG | - | chr6_1:17938142-17938161 | Msa0877840:three_prime_UTR | 25.0% |
| !!! | GATTTTTGGTGATTTTGAAA+TGG | - | chr6_1:17938278-17938297 | Msa0877840:three_prime_UTR | 25.0% |
| ! | TGAAACTAGAGAAGAAAAAT+GGG | - | chr6_1:17938334-17938353 | Msa0877840:CDS | 25.0% |
| ! | CAAAGACTTTACCTTTATAT+AGG | - | chr6_1:17938383-17938402 | Msa0877840:CDS | 25.0% |
| !! | AAAACCATCTTGGTAATTTA+GGG | - | chr6_1:17938443-17938462 | Msa0877840:intron | 25.0% |
| ! | TTTCATAACAATAAGGATGA+TGG | - | chr6_1:17938766-17938785 | Msa0877840:intron | 25.0% |
| ! | AGACTCAAACCTAAATAAAA+GGG | + | chr6_1:17939118-17939137 | None:intergenic | 25.0% |
| ! | TAGACTCAAACCTAAATAAA+AGG | + | chr6_1:17939119-17939138 | None:intergenic | 25.0% |
| !! | CAGCTTTATACAAAAGATTA+AGG | + | chr6_1:17939441-17939460 | None:intergenic | 25.0% |
| ! | GTATTAAGGAAATATCAACA+TGG | + | chr6_1:17940089-17940108 | None:intergenic | 25.0% |
| !! | GATTTTATATTTCCTTTGGT+TGG | - | chr6_1:17940160-17940179 | Msa0877840:intron | 25.0% |
| ! | TAAATAAACAAACCAACCAA+AGG | + | chr6_1:17940175-17940194 | None:intergenic | 25.0% |
| ! | TTAAAATGGAAACTTTGTCT+TGG | - | chr6_1:17940410-17940429 | Msa0877840:intron | 25.0% |
| ! | CTTGTTAAGGATTCAAAAAA+TGG | + | chr6_1:17940504-17940523 | None:intergenic | 25.0% |
| !!! | TTCTTGTTTGTTGATTTTTC+GGG | - | chr6_1:17940748-17940767 | Msa0877840:CDS | 25.0% |
| !! | TACTTAAGAGCATAAAACTT+AGG | - | chr6_1:17940805-17940824 | Msa0877840:CDS | 25.0% |
| !!! | ATAACTCTATTTTAGGCTTT+TGG | - | chr6_1:17940887-17940906 | Msa0877840:CDS | 25.0% |
| !!! | TAGTTTGTAACTTTTGTTAG+AGG | - | chr6_1:17941038-17941057 | Msa0877840:CDS | 25.0% |
| !!! | TTAGTGTTTTGTTAGTTTCA+AGG | - | chr6_1:17941486-17941505 | Msa0877840:CDS | 25.0% |
| !!! | TAGTGTTTTGTTAGTTTCAA+GGG | - | chr6_1:17941487-17941506 | Msa0877840:CDS | 25.0% |
| TTTAAAGGGTGGTTGAAAAT+TGG | + | chr6_1:17938015-17938034 | None:intergenic | 30.0% | |
| GAACAAGTTTCTTTGATGTT+TGG | + | chr6_1:17938087-17938106 | None:intergenic | 30.0% | |
| ! | GAAGTAGTTTTTGCATCTAA+AGG | + | chr6_1:17938192-17938211 | None:intergenic | 30.0% |
| CTACTTTAATCTGTATTTGG+TGG | + | chr6_1:17938259-17938278 | None:intergenic | 30.0% | |
| GAAATAGAGTTATAGGTTTG+TGG | - | chr6_1:17938311-17938330 | Msa0877840:exon | 30.0% | |
| GTGAAACTAGAGAAGAAAAA+TGG | - | chr6_1:17938333-17938352 | Msa0877840:CDS | 30.0% | |
| GAAACTAGAGAAGAAAAATG+GGG | - | chr6_1:17938335-17938354 | Msa0877840:CDS | 30.0% | |
| ACTTTACCTTTATATAGGTC+AGG | - | chr6_1:17938388-17938407 | Msa0877840:CDS | 30.0% | |
| AAAGATCCTGACCTATATAA+AGG | + | chr6_1:17938397-17938416 | None:intergenic | 30.0% | |
| ! | CAAAACCATCTTGGTAATTT+AGG | - | chr6_1:17938442-17938461 | Msa0877840:intron | 30.0% |
| TAGTAAGAAAACTGTTGATG+AGG | - | chr6_1:17938615-17938634 | Msa0877840:intron | 30.0% | |
| ATATCGCCATCTTCTTTAAT+GGG | - | chr6_1:17938988-17939007 | Msa0877840:intron | 30.0% | |
| !! | TCCTGATTTCCCTTTTATTT+AGG | - | chr6_1:17939106-17939125 | Msa0877840:intron | 30.0% |
| ACCTAAATAAAAGGGAAATC+AGG | + | chr6_1:17939110-17939129 | None:intergenic | 30.0% | |
| CAGCTTATATGAAAACAGAA+TGG | + | chr6_1:17939233-17939252 | None:intergenic | 30.0% | |
| ! | AAGCATTTGTGAGAATGTTT+TGG | + | chr6_1:17939346-17939365 | None:intergenic | 30.0% |
| TTATCAGATACACAAACACT+AGG | - | chr6_1:17939537-17939556 | Msa0877840:intron | 30.0% | |
| TTTCTCTACTAAAATACCAG+AGG | + | chr6_1:17939577-17939596 | None:intergenic | 30.0% | |
| !!! | TGAAGTCCTGTTTGTTTTTT+TGG | - | chr6_1:17939708-17939727 | Msa0877840:intron | 30.0% |
| GTCAAACCAAAAAAACAAAC+AGG | + | chr6_1:17939717-17939736 | None:intergenic | 30.0% | |
| GTTTAGAAGAGGAAAATGAA+AGG | - | chr6_1:17939806-17939825 | Msa0877840:intron | 30.0% | |
| ! | GTTTTCTGTAATGCATCAAT+TGG | + | chr6_1:17940056-17940075 | None:intergenic | 30.0% |
| AGGCATATCGATAAGTATTA+AGG | + | chr6_1:17940103-17940122 | None:intergenic | 30.0% | |
| GTTTGTTTATTTAGACAGAG+TGG | - | chr6_1:17940182-17940201 | Msa0877840:intron | 30.0% | |
| GAAAAACAACAGTAGTTAGT+AGG | + | chr6_1:17940731-17940750 | None:intergenic | 30.0% | |
| !!! | TGTTGATTTTTCGGGATAAT+TGG | - | chr6_1:17940756-17940775 | Msa0877840:CDS | 30.0% |
| ! | GAGCATAAAACTTAGGTTTT+TGG | - | chr6_1:17940812-17940831 | Msa0877840:CDS | 30.0% |
| GTTAGTAAAGTCACATATGT+AGG | + | chr6_1:17941624-17941643 | None:intergenic | 30.0% | |
| AAACTATGATCCTGTGTTTG+TGG | - | chr6_1:17937926-17937945 | Msa0877840:three_prime_UTR | 35.0% | |
| TTGAAAAGGGATTTAAAGGG+TGG | + | chr6_1:17938026-17938045 | None:intergenic | 35.0% | |
| ! | TGAGATTGATTTCACTTTCC+AGG | - | chr6_1:17938112-17938131 | Msa0877840:three_prime_UTR | 35.0% |
| GATGAAGTTCAAAACCATCT+TGG | - | chr6_1:17938433-17938452 | Msa0877840:intron | 35.0% | |
| GTTTCCCTAAATTACCAAGA+TGG | + | chr6_1:17938450-17938469 | None:intergenic | 35.0% | |
| TCAAGATTCATACTTCCAAG+TGG | + | chr6_1:17938472-17938491 | None:intergenic | 35.0% | |
| ! | CATAACAATAAGGATGATGG+TGG | - | chr6_1:17938769-17938788 | Msa0877840:intron | 35.0% |
| ! | TTGATTCGAATGAGGATTCT+CGG | - | chr6_1:17938803-17938822 | Msa0877840:intron | 35.0% |
| TCTTCATTGGATGCAATATC+CGG | - | chr6_1:17938846-17938865 | Msa0877840:intron | 35.0% | |
| ! | GTATGAAAAGCATATGATGC+CGG | - | chr6_1:17938897-17938916 | Msa0877840:intron | 35.0% |
| ! | TATGAAAAGCATATGATGCC+GGG | - | chr6_1:17938898-17938917 | Msa0877840:intron | 35.0% |
| GATATCGCCATCTTCTTTAA+TGG | - | chr6_1:17938987-17939006 | Msa0877840:intron | 35.0% | |
| GTAGTACCCATTAAAGAAGA+TGG | + | chr6_1:17938997-17939016 | None:intergenic | 35.0% | |
| AGAATAAGGAACTTGATCCT+AGG | + | chr6_1:17939084-17939103 | None:intergenic | 35.0% | |
| GGGAAATCAGGAAAAGAATA+AGG | + | chr6_1:17939098-17939117 | None:intergenic | 35.0% | |
| TGAGTCTATGTATCCCTATT+TGG | - | chr6_1:17939131-17939150 | Msa0877840:intron | 35.0% | |
| ! | TCTGATAATGTACCTGTTGA+AGG | + | chr6_1:17939525-17939544 | None:intergenic | 35.0% |
| ACAAACACTAGGTCGAAAAA+GGG | - | chr6_1:17939548-17939567 | Msa0877840:intron | 35.0% | |
| ! | GTTATACTCTTTTCTCTGTG+AGG | - | chr6_1:17939669-17939688 | Msa0877840:intron | 35.0% |
| !!! | TGTTTTTTTGGTTTGACACG+AGG | - | chr6_1:17939720-17939739 | Msa0877840:intron | 35.0% |
| TGCACATTTCATTGGCATAT+GGG | + | chr6_1:17939751-17939770 | None:intergenic | 35.0% | |
| TATAAGCCTGCACATTTCAT+TGG | + | chr6_1:17939759-17939778 | None:intergenic | 35.0% | |
| TAAAGTTTCGCGTTTAGAAG+AGG | - | chr6_1:17939795-17939814 | Msa0877840:CDS | 35.0% | |
| CATTACAGAAAACTCCACTT+TGG | - | chr6_1:17940063-17940082 | Msa0877840:CDS | 35.0% | |
| AAATATCAACATGGCCAAAG+TGG | + | chr6_1:17940080-17940099 | None:intergenic | 35.0% | |
| GTTTATTTAGACAGAGTGGT+TGG | - | chr6_1:17940186-17940205 | Msa0877840:intron | 35.0% | |
| TTAAACCTCTTAACCCCTAA+GGG | + | chr6_1:17940394-17940413 | None:intergenic | 35.0% | |
| TTTAAACCTCTTAACCCCTA+AGG | + | chr6_1:17940395-17940414 | None:intergenic | 35.0% | |
| AGGGGTTAAGAGGTTTAAAA+TGG | - | chr6_1:17940396-17940415 | Msa0877840:intron | 35.0% | |
| TTCATCAAACTGTAAGACCT+CGG | - | chr6_1:17940606-17940625 | Msa0877840:intron | 35.0% | |
| TACCAATAACATGTCGTCTA+TGG | - | chr6_1:17940661-17940680 | Msa0877840:CDS | 35.0% | |
| CTCTTAAGTAGAGACATGAA+TGG | + | chr6_1:17940795-17940814 | None:intergenic | 35.0% | |
| TTAACACAACCCTACAAAAC+CGG | - | chr6_1:17940836-17940855 | Msa0877840:CDS | 35.0% | |
| !!! | GCTTTGAAATCAGTTTTGTG+AGG | + | chr6_1:17940924-17940943 | None:intergenic | 35.0% |
| TCACTAATCAAAGTGAGACT+TGG | - | chr6_1:17940983-17941002 | Msa0877840:CDS | 35.0% | |
| CACTAATCAAAGTGAGACTT+GGG | - | chr6_1:17940984-17941003 | Msa0877840:CDS | 35.0% | |
| AGATAGTTCATCTCTACTCA+CGG | - | chr6_1:17941136-17941155 | Msa0877840:CDS | 35.0% | |
| !! | GGTAACATTTTTGTTGTCAC+AGG | - | chr6_1:17941157-17941176 | Msa0877840:CDS | 35.0% |
| GTTGCAATGAAGACATCAAA+AGG | + | chr6_1:17941255-17941274 | None:intergenic | 35.0% | |
| ACAACTACCTTCAACTGTAA+CGG | + | chr6_1:17941346-17941365 | None:intergenic | 35.0% | |
| !! | TAGTTCGGTTGGTAAGTTAA+GGG | + | chr6_1:17941539-17941558 | None:intergenic | 35.0% |
| AATAGATGCTCCACAAACAC+AGG | + | chr6_1:17937939-17937958 | None:intergenic | 40.0% | |
| GGGTTTGAATAGAACATACC+TGG | + | chr6_1:17938133-17938152 | None:intergenic | 40.0% | |
| AGAAGAAAAATGGGGTCACA+AGG | - | chr6_1:17938343-17938362 | Msa0877840:CDS | 40.0% | |
| GGTAATTTAGGGAAACCACT+TGG | - | chr6_1:17938454-17938473 | Msa0877840:intron | 40.0% | |
| ! | ATGAGTTGCTTAAGAGTGTG+TGG | - | chr6_1:17938491-17938510 | Msa0877840:intron | 40.0% |
| CTGGTGGTTTGAATTCACAA+GGG | - | chr6_1:17938569-17938588 | Msa0877840:intron | 40.0% | |
| CAAGGGAGTTTAGCATTATC+TGG | - | chr6_1:17938586-17938605 | Msa0877840:intron | 40.0% | |
| ! | AGAAAACTGTTGATGAGGTG+TGG | - | chr6_1:17938620-17938639 | Msa0877840:intron | 40.0% |
| AGGTGTGGAAAGATATGCAA+GGG | - | chr6_1:17938635-17938654 | Msa0877840:intron | 40.0% | |
| AAGATATGCAAGGGAAGAAG+AGG | - | chr6_1:17938644-17938663 | Msa0877840:intron | 40.0% | |
| AGATATGCAAGGGAAGAAGA+GGG | - | chr6_1:17938645-17938664 | Msa0877840:intron | 40.0% | |
| CGTGAAAAACAACAGACACT+TGG | - | chr6_1:17938691-17938710 | Msa0877840:intron | 40.0% | |
| ! | GATGACTTTGGAGGATTTCT+TGG | - | chr6_1:17938717-17938736 | Msa0877840:intron | 40.0% |
| !! | AGGATGATGGTGGTTTGTTA+AGG | - | chr6_1:17938779-17938798 | Msa0877840:intron | 40.0% |
| !! | GGATGATGGTGGTTTGTTAA+GGG | - | chr6_1:17938780-17938799 | Msa0877840:intron | 40.0% |
| !! | GTTAAGGGTTGATTCGAATG+AGG | - | chr6_1:17938795-17938814 | Msa0877840:intron | 40.0% |
| TTTCGCAACATGGTCTTCAT+TGG | - | chr6_1:17938833-17938852 | Msa0877840:intron | 40.0% | |
| AACCTGAAAAGGCTGTTGAA+TGG | + | chr6_1:17938941-17938960 | None:intergenic | 40.0% | |
| TGCATCCAAAACTTGATTCC+CGG | + | chr6_1:17938965-17938984 | None:intergenic | 40.0% | |
| !!! | GCTGCTTTTATTAGCTATCC+TGG | - | chr6_1:17939256-17939275 | Msa0877840:intron | 40.0% |
| ! | AATGTACCTGTTGAAGGTGT+GGG | + | chr6_1:17939519-17939538 | None:intergenic | 40.0% |
| TAATGTACCTGTTGAAGGTG+TGG | + | chr6_1:17939520-17939539 | None:intergenic | 40.0% | |
| CACAAACACTAGGTCGAAAA+AGG | - | chr6_1:17939547-17939566 | Msa0877840:intron | 40.0% | |
| TAGTAGAGAAAACTGTCGAG+AGG | - | chr6_1:17939586-17939605 | Msa0877840:intron | 40.0% | |
| CTGCACATTTCATTGGCATA+TGG | + | chr6_1:17939752-17939771 | None:intergenic | 40.0% | |
| CATATGCCAATGAAATGTGC+AGG | - | chr6_1:17939750-17939769 | Msa0877840:CDS | 40.0% | |
| GGATTTCAAGCAATGAGAGT+TGG | - | chr6_1:17940207-17940226 | Msa0877840:intron | 40.0% | |
| TCAAGCAATGAGAGTTGGAA+TGG | - | chr6_1:17940212-17940231 | Msa0877840:intron | 40.0% | |
| ! | GACATAATCCCAAAAGTGCA+GGG | + | chr6_1:17940260-17940279 | None:intergenic | 40.0% |
| ! | TGACATAATCCCAAAAGTGC+AGG | + | chr6_1:17940261-17940280 | None:intergenic | 40.0% |
| AAATGCTAACAAGTGCCCTT+AGG | - | chr6_1:17940376-17940395 | Msa0877840:intron | 40.0% | |
| AATGCTAACAAGTGCCCTTA+GGG | - | chr6_1:17940377-17940396 | Msa0877840:intron | 40.0% | |
| TTTGCTAACAAGTGCCCTTA+GGG | + | chr6_1:17940540-17940559 | None:intergenic | 40.0% | |
| ! | TTTTGCTAACAAGTGCCCTT+AGG | + | chr6_1:17940541-17940560 | None:intergenic | 40.0% |
| GTCCATAGACGACATGTTAT+TGG | + | chr6_1:17940666-17940685 | None:intergenic | 40.0% | |
| !! | CCTTACAAACCGGTTTTGTA+GGG | + | chr6_1:17940848-17940867 | None:intergenic | 40.0% |
| !! | ACCTTACAAACCGGTTTTGT+AGG | + | chr6_1:17940849-17940868 | None:intergenic | 40.0% |
| GCATTCTTCACCTTACAAAC+CGG | + | chr6_1:17940858-17940877 | None:intergenic | 40.0% | |
| !! | CAGTTTTGTGAGGTTGTCTT+CGG | + | chr6_1:17940914-17940933 | None:intergenic | 40.0% |
| !! | AGGATGCTGAATTAGTTCTG+CGG | + | chr6_1:17941235-17941254 | None:intergenic | 40.0% |
| ACAAGTTCCGTTACAGTTGA+AGG | - | chr6_1:17941336-17941355 | Msa0877840:intron | 40.0% | |
| !! | GTAGTTCGGTTGGTAAGTTA+AGG | + | chr6_1:17941540-17941559 | None:intergenic | 40.0% |
| GAGCAAGATCAGCGTTCAAA+GGG | + | chr6_1:17937976-17937995 | None:intergenic | 45.0% | |
| AGAGCAAGATCAGCGTTCAA+AGG | + | chr6_1:17937977-17937996 | None:intergenic | 45.0% | |
| AGAAAAATGGGGTCACAAGG+TGG | - | chr6_1:17938346-17938365 | Msa0877840:CDS | 45.0% | |
| GCTGGTGGTTTGAATTCACA+AGG | - | chr6_1:17938568-17938587 | Msa0877840:intron | 45.0% | |
| GAGGTGTGGAAAGATATGCA+AGG | - | chr6_1:17938634-17938653 | Msa0877840:intron | 45.0% | |
| GATATGCAAGGGAAGAAGAG+GGG | - | chr6_1:17938646-17938665 | Msa0877840:intron | 45.0% | |
| !! | GAAGAAGAGGGGTGTTGATA+GGG | - | chr6_1:17938657-17938676 | Msa0877840:intron | 45.0% |
| ! | GACACTTGGTGAGATGACTT+TGG | - | chr6_1:17938705-17938724 | Msa0877840:intron | 45.0% |
| ! | ACTTGGTGAGATGACTTTGG+AGG | - | chr6_1:17938708-17938727 | Msa0877840:intron | 45.0% |
| GAGGATTTCTTGGTGAAAGC+TGG | - | chr6_1:17938727-17938746 | Msa0877840:intron | 45.0% | |
| TTGGTGAAAGCTGGAGTTGT+TGG | - | chr6_1:17938736-17938755 | Msa0877840:intron | 45.0% | |
| CGGCAAAATGTTTCGCAACA+TGG | - | chr6_1:17938823-17938842 | Msa0877840:intron | 45.0% | |
| GTTGTTGCTGCTGAACAGAA+TGG | + | chr6_1:17938873-17938892 | None:intergenic | 45.0% | |
| ! | TGCCATTCAACAGCCTTTTC+AGG | - | chr6_1:17938936-17938955 | Msa0877840:intron | 45.0% |
| CATACTTCAACAAGCTCTCC+AGG | + | chr6_1:17939277-17939296 | None:intergenic | 45.0% | |
| AAAACTCCCACACCTTCAAC+AGG | - | chr6_1:17939510-17939529 | Msa0877840:intron | 45.0% | |
| TAGAGAAAACTGTCGAGAGG+AGG | - | chr6_1:17939589-17939608 | Msa0877840:intron | 45.0% | |
| ! | ACTCTTTTCTCTGTGAGGTG+TGG | - | chr6_1:17939674-17939693 | Msa0877840:intron | 45.0% |
| GCAGGCTTATACACAAGAAC+TGG | - | chr6_1:17939768-17939787 | Msa0877840:CDS | 45.0% | |
| GCACTTTGTTCTGTGAGCTT+TGG | - | chr6_1:17939907-17939926 | Msa0877840:intron | 45.0% | |
| ! | ATCAGAATGCCCTGCACTTT+TGG | - | chr6_1:17940248-17940267 | Msa0877840:intron | 45.0% |
| ! | TCAGAATGCCCTGCACTTTT+GGG | - | chr6_1:17940249-17940268 | Msa0877840:intron | 45.0% |
| ATGCTAACAAGTGCCCTTAG+GGG | - | chr6_1:17940378-17940397 | Msa0877840:intron | 45.0% | |
| !! | CACTTGAAGGGCACTTGTTA+AGG | + | chr6_1:17940517-17940536 | None:intergenic | 45.0% |
| TCGTCTATGGACCAACCATA+TGG | - | chr6_1:17940674-17940693 | Msa0877840:CDS | 45.0% | |
| TGGACCAACCATATGGTATG+TGG | - | chr6_1:17940681-17940700 | Msa0877840:CDS | 45.0% | |
| ACCAACCATATGGTATGTGG+TGG | - | chr6_1:17940684-17940703 | Msa0877840:CDS | 45.0% | |
| TCCACCACATACCATATGGT+TGG | + | chr6_1:17940688-17940707 | None:intergenic | 45.0% | |
| TCAGTCCACCACATACCATA+TGG | + | chr6_1:17940692-17940711 | None:intergenic | 45.0% | |
| !! | CCCTACAAAACCGGTTTGTA+AGG | - | chr6_1:17940845-17940864 | Msa0877840:CDS | 45.0% |
| GTTGTCACAGGAGATAGAGA+AGG | - | chr6_1:17941169-17941188 | Msa0877840:CDS | 45.0% | |
| !! | GTTCTGCGGAGCTGATTTTT+AGG | + | chr6_1:17941221-17941240 | None:intergenic | 45.0% |
| TGCAATCAATTCTCCACAGC+AGG | - | chr6_1:17941379-17941398 | Msa0877840:intron | 45.0% | |
| TAGTAGAATAGAGCCTGCTG+TGG | + | chr6_1:17941395-17941414 | None:intergenic | 45.0% | |
| TCAGACTCGCGTAAGTAGTT+CGG | + | chr6_1:17941554-17941573 | None:intergenic | 45.0% | |
| !! | AGTGTGTGGAGTGTTGAAGC+TGG | - | chr6_1:17938505-17938524 | Msa0877840:intron | 50.0% |
| TGTTGAAGCTGGCGAGGTTT+CGG | - | chr6_1:17938516-17938535 | Msa0877840:intron | 50.0% | |
| !! | GGAAGAAGAGGGGTGTTGAT+AGG | - | chr6_1:17938656-17938675 | Msa0877840:intron | 50.0% |
| !! | AGAGGGGTGTTGATAGGGAT+AGG | - | chr6_1:17938662-17938681 | Msa0877840:intron | 50.0% |
| TGCTGCTGAACAGAATGGAC+CGG | + | chr6_1:17938868-17938887 | None:intergenic | 50.0% | |
| ! | GCATATGATGCCGGGTTTTG+CGG | - | chr6_1:17938906-17938925 | Msa0877840:intron | 50.0% |
| !!! | CAACAGCCTTTTCAGGTTGC+CGG | - | chr6_1:17938943-17938962 | Msa0877840:intron | 50.0% |
| !!! | AACAGCCTTTTCAGGTTGCC+GGG | - | chr6_1:17938944-17938963 | Msa0877840:intron | 50.0% |
| TGATTCCCGGCAACCTGAAA+AGG | + | chr6_1:17938952-17938971 | None:intergenic | 50.0% | |
| ! | GGTTGCCGGGAATCAAGTTT+TGG | - | chr6_1:17938957-17938976 | Msa0877840:intron | 50.0% |
| TCGTTCACGAGCAAGAAGAC+AGG | - | chr6_1:17939647-17939666 | Msa0877840:intron | 50.0% | |
| AAGTGCCCTTAGGGGTTAAG+AGG | - | chr6_1:17940386-17940405 | Msa0877840:intron | 50.0% | |
| CTGTAAGACCTCGGAACAAG+CGG | - | chr6_1:17940615-17940634 | Msa0877840:intron | 50.0% | |
| GTCACAGGAGATAGAGAAGG+AGG | - | chr6_1:17941172-17941191 | Msa0877840:CDS | 50.0% | |
| !! | TGATTTTTAGGCTCGGGTGG+TGG | + | chr6_1:17941209-17941228 | None:intergenic | 50.0% |
| !! | AGCTGATTTTTAGGCTCGGG+TGG | + | chr6_1:17941212-17941231 | None:intergenic | 50.0% |
| !! | CGGAGCTGATTTTTAGGCTC+GGG | + | chr6_1:17941215-17941234 | None:intergenic | 50.0% |
| !! | GCGGAGCTGATTTTTAGGCT+CGG | + | chr6_1:17941216-17941235 | None:intergenic | 50.0% |
| TTTGAACCCGAGACCTCCTT+CGG | - | chr6_1:17941510-17941529 | Msa0877840:CDS | 50.0% | |
| AAGTTAAGGGACACCGAAGG+AGG | + | chr6_1:17941526-17941545 | None:intergenic | 50.0% | |
| GGTAAGTTAAGGGACACCGA+AGG | + | chr6_1:17941529-17941548 | None:intergenic | 50.0% | |
| ACTCGCGTAAGTAGTTCGGT+TGG | + | chr6_1:17941550-17941569 | None:intergenic | 50.0% | |
| GCTGGCGAGGTTTCGGATTT+CGG | - | chr6_1:17938523-17938542 | Msa0877840:intron | 55.0% | |
| AGTGATGTTGCTGCTGCTGC+TGG | - | chr6_1:17938550-17938569 | Msa0877840:intron | 55.0% | |
| GCATGAACTGCCGCAAAACC+CGG | + | chr6_1:17938919-17938938 | None:intergenic | 55.0% | |
| GGTCGAAAAAGGGTTGCCTC+TGG | - | chr6_1:17939558-17939577 | Msa0877840:intron | 55.0% | |
| CTGTCGAGAGGAGGCAAAAG+AGG | - | chr6_1:17939598-17939617 | Msa0877840:intron | 55.0% | |
| AGTGCCCTTCAAGTGCCCTA+AGG | - | chr6_1:17940522-17940541 | Msa0877840:intron | 55.0% | |
| GTGCCCTTCAAGTGCCCTAA+GGG | - | chr6_1:17940523-17940542 | Msa0877840:intron | 55.0% | |
| ! | GTGCCCTTAGGGCACTTGAA+GGG | + | chr6_1:17940529-17940548 | None:intergenic | 55.0% |
| ! | AGTGCCCTTAGGGCACTTGA+AGG | + | chr6_1:17940530-17940549 | None:intergenic | 55.0% |
| GCTATGTACCGCTTGTTCCG+AGG | + | chr6_1:17940626-17940645 | None:intergenic | 55.0% | |
| !! | GTGGAGTGTTGAAGCTGGCG+AGG | - | chr6_1:17938510-17938529 | Msa0877840:intron | 60.0% |
| GGCGAGGTTTCGGATTTCGG+CGG | - | chr6_1:17938526-17938545 | Msa0877840:intron | 60.0% | |
| GATGTTGCTGCTGCTGCTGG+TGG | - | chr6_1:17938553-17938572 | Msa0877840:intron | 60.0% | |
| AGGGACACCGAAGGAGGTCT+CGG | + | chr6_1:17941520-17941539 | None:intergenic | 60.0% | |
| GGGACACCGAAGGAGGTCTC+GGG | + | chr6_1:17941519-17941538 | None:intergenic | 65.0% | |
| ! | GGCTCGGGTGGTGGCGCAGT+TGG | + | chr6_1:17941200-17941219 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 17937904 | 17941683 | 17937904 | ID=Msa0877840;Name=Msa0877840 |
| chr6_1 | mRNA | 17937904 | 17941683 | 17937904 | ID=Msa0877840-mRNA-1;Parent=Msa0877840;Name=Msa0877840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=149|0.2|0.5|0.83|0.8|0.66|6|424|371 |
| chr6_1 | exon | 17937904 | 17938408 | 17937904 | ID=Msa0877840-mRNA-1:exon:4890;Parent=Msa0877840-mRNA-1 |
| chr6_1 | exon | 17939289 | 17939387 | 17939289 | ID=Msa0877840-mRNA-1:exon:4889;Parent=Msa0877840-mRNA-1 |
| chr6_1 | exon | 17939744 | 17939815 | 17939744 | ID=Msa0877840-mRNA-1:exon:4888;Parent=Msa0877840-mRNA-1 |
| chr6_1 | exon | 17939919 | 17940086 | 17939919 | ID=Msa0877840-mRNA-1:exon:4887;Parent=Msa0877840-mRNA-1 |
| chr6_1 | exon | 17940630 | 17941244 | 17940630 | ID=Msa0877840-mRNA-1:exon:4886;Parent=Msa0877840-mRNA-1 |
| chr6_1 | exon | 17941454 | 17941683 | 17941454 | ID=Msa0877840-mRNA-1:exon:4885;Parent=Msa0877840-mRNA-1 |
| chr6_1 | five_prime_UTR | 17941535 | 17941683 | 17941535 | ID=Msa0877840-mRNA-1:five_prime_utr;Parent=Msa0877840-mRNA-1 |
| chr6_1 | CDS | 17941454 | 17941534 | 17941454 | ID=Msa0877840-mRNA-1:cds;Parent=Msa0877840-mRNA-1 |
| chr6_1 | CDS | 17940630 | 17941244 | 17940630 | ID=Msa0877840-mRNA-1:cds;Parent=Msa0877840-mRNA-1 |
| chr6_1 | CDS | 17939919 | 17940086 | 17939919 | ID=Msa0877840-mRNA-1:cds;Parent=Msa0877840-mRNA-1 |
| chr6_1 | CDS | 17939744 | 17939815 | 17939744 | ID=Msa0877840-mRNA-1:cds;Parent=Msa0877840-mRNA-1 |
| chr6_1 | CDS | 17939289 | 17939387 | 17939289 | ID=Msa0877840-mRNA-1:cds;Parent=Msa0877840-mRNA-1 |
| chr6_1 | CDS | 17938328 | 17938408 | 17938328 | ID=Msa0877840-mRNA-1:cds;Parent=Msa0877840-mRNA-1 |
| chr6_1 | three_prime_UTR | 17937904 | 17938327 | 17937904 | ID=Msa0877840-mRNA-1:three_prime_utr;Parent=Msa0877840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
