AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085930 MtrunA17_Chr8g0387211 97.208 573 16 0 1 573 1 573 0.0 1154
Msa1085930 MtrunA17_Chr4g0048391 83.559 590 76 3 1 573 3 588 0.0 1010
Msa1085930 MtrunA17_Chr7g0251831 55.323 573 241 5 9 573 6 571 0.0 640
Msa1085930 MtrunA17_Chr1g0196061 52.807 570 260 2 9 573 16 581 0.0 637
Msa1085930 MtrunA17_Chr5g0427061 49.825 572 272 6 9 573 53 616 0.0 546
Msa1085930 MtrunA17_Chr3g0133241 49.303 574 275 6 11 573 25 593 0.0 545
Msa1085930 MtrunA17_Chr5g0436511 32.657 591 357 15 6 573 10 582 4.11e-94 300
Msa1085930 MtrunA17_Chr3g0113151 30.420 595 372 12 6 573 14 593 1.17e-79 262
Msa1085930 MtrunA17_Chr8g0364131 29.038 551 318 15 31 567 9 500 2.54e-59 205
Msa1085930 MtrunA17_Chr5g0439771 51.456 103 45 1 35 132 17 119 1.89e-28 110
Msa1085930 MtrunA17_Chr2g0286991 22.711 546 324 14 9 536 13 478 2.00e-23 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085930 AT3G62980.1 55.614 570 244 2 9 573 11 576 0.0 631
Msa1085930 AT1G12820.1 52.577 582 249 5 9 573 6 577 0.0 623
Msa1085930 AT3G26810.1 54.087 575 249 5 9 573 6 575 0.0 621
Msa1085930 AT4G03190.1 53.147 572 260 3 6 573 4 571 0.0 613
Msa1085930 AT4G24390.2 49.739 575 272 6 9 573 56 623 0.0 564
Msa1085930 AT4G24390.1 49.739 575 272 6 9 573 56 623 0.0 564
Msa1085930 AT5G49980.1 49.209 569 280 5 9 573 56 619 0.0 548
Msa1085930 AT2G39940.1 31.472 591 369 12 4 573 13 588 2.56e-98 311
Msa1085930 AT4G15475.1 24.176 546 342 19 9 536 13 504 7.15e-21 97.1
Msa1085930 AT5G25350.1 27.542 236 127 10 315 519 166 388 7.27e-12 68.6

Find 151 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACACCCTTTCTGGTTTA+TGG 0.078775 7_2:-86939018 Msa1085930:CDS
TCCAATGATGTAAAGCTTTC+TGG 0.097724 7_2:+86939280 None:intergenic
TCAACTTGGTTCCTGAAAAT+TGG 0.125267 7_2:-86940434 Msa1085930:CDS
AAGAGTCTTCACACCCTTTC+TGG 0.147620 7_2:-86939025 Msa1085930:CDS
CTCCAAAGGCTTTCTGTATC+AGG 0.215148 7_2:-86938399 Msa1085930:CDS
TCACACCCTTTCTGGTTTAT+GGG 0.221558 7_2:-86939017 Msa1085930:CDS
TTCCATCAAGTTCCATGTTT+TGG 0.222745 7_2:-86940853 Msa1085930:five_prime_UTR
CAACTTGGTTCCTGAAAATT+GGG 0.247042 7_2:-86940433 Msa1085930:CDS
GTTGAATGTTGAAGTAATTA+AGG 0.252910 7_2:-86938103 Msa1085930:CDS
CCTTGGAATGTGACCGTATA+TGG 0.262480 7_2:-86937561 Msa1085930:three_prime_UTR
CAACAACACAACATTGTAAT+TGG 0.262838 7_2:+86941021 None:intergenic
GTCCTGACTTCACTCATTTC+CGG 0.265535 7_2:-86938512 Msa1085930:CDS
GTCCTAATCTTCGGCGCCTT+TGG 0.274559 7_2:-86938868 Msa1085930:CDS
TCCTAATCTTCGGCGCCTTT+GGG 0.278407 7_2:-86938867 Msa1085930:intron
CGATATTTACATCATTGTTT+AGG 0.287424 7_2:+86939239 None:intergenic
GTCAGGTAATCTGGCTGATT+AGG 0.288888 7_2:+86938474 None:intergenic
GACCTCGCATTTGAGTATTT+AGG 0.296175 7_2:-86938366 Msa1085930:CDS
TCAGGTAATCTGGCTGATTA+GGG 0.296950 7_2:+86938475 None:intergenic
ATGCAAGTGTCCATTGTAAA+TGG 0.297989 7_2:-86937334 Msa1085930:three_prime_UTR
ACCTCGCATTTGAGTATTTA+GGG 0.305990 7_2:-86938365 Msa1085930:CDS
TATGTTTATCGTTCTGTTGC+CGG 0.306416 7_2:-86938045 Msa1085930:CDS
GGTTCATTTGTCAGGTAATC+TGG 0.309160 7_2:+86938465 None:intergenic
ACAATGAAGCCTCAGTAATA+TGG 0.313485 7_2:-86937522 Msa1085930:three_prime_UTR
AGTGTAACACTTCTTATGTT+TGG 0.320668 7_2:+86940483 None:intergenic
GAAATATGTTTGTCTCTTCC+AGG 0.328855 7_2:+86937196 None:intergenic
CTAACTTTAAACTACCCTTT+TGG 0.330991 7_2:+86940722 None:intergenic
AATGGAGGGGCATCCCTTCT+TGG 0.338658 7_2:+86938021 None:intergenic
TTGACGAGGGTGTTGTGCAC+GGG 0.346978 7_2:-86938647 Msa1085930:CDS
CAATTACAATGTTGTGTTGT+TGG 0.349096 7_2:-86941020 Msa1085930:five_prime_UTR
TCCAGAAAGCTTTACATCAT+TGG 0.349988 7_2:-86939281 Msa1085930:CDS
CTTGCCTTCTTTCAACTAGT+TGG 0.351212 7_2:-86937374 Msa1085930:three_prime_UTR
TAAATCTTACTTGCAATTAG+TGG 0.351338 7_2:+86940224 None:intergenic
GAAGTGTTGAAACAAGTTCT+TGG 0.355603 7_2:-86940645 Msa1085930:CDS
GGGATGCAGTCTGTACTTGC+TGG 0.363431 7_2:-86938285 Msa1085930:CDS
TTGCCGGAAGCAGTGACTTT+GGG 0.371104 7_2:-86938305 Msa1085930:CDS
TTGCCTTCTTTCAACTAGTT+GGG 0.371284 7_2:-86937373 Msa1085930:three_prime_UTR
ATTACTGAGGCTTCATTGTC+AGG 0.371423 7_2:+86937526 None:intergenic
TTGTTCATTGTCCTAATCTT+CGG 0.380170 7_2:-86938877 Msa1085930:CDS
GTGCACGGGGTTACTGAATC+AGG 0.384151 7_2:-86938633 Msa1085930:CDS
CATCCATAGGTTCATTTGTC+AGG 0.387955 7_2:+86938457 None:intergenic
CATCCCAAAGTCACTGCTTC+CGG 0.404250 7_2:+86938302 None:intergenic
GCTGAGAAAACTTGAGATAA+GGG 0.404897 7_2:-86938253 Msa1085930:CDS
GAACCTATGGATGAGGCCTT+TGG 0.408205 7_2:-86938447 Msa1085930:CDS
GCCCCTCAGTTATGTGAGCT+TGG 0.420842 7_2:-86939118 Msa1085930:CDS
GACACTTGCATTATTTCTCT+TGG 0.421671 7_2:+86937346 None:intergenic
AGAAGGAAGCGATGATAGTC+AGG 0.422000 7_2:-86938079 Msa1085930:CDS
ATGGAGGGGCATCCCTTCTT+GGG 0.423321 7_2:+86938022 None:intergenic
AGCCTCAACTCCTCAAGAAA+AGG 0.428352 7_2:+86940366 None:intergenic
TTGAATTGAAATATTTATCC+TGG 0.432612 7_2:-86937214 Msa1085930:three_prime_UTR
GAACAAGAGTGATGATGATA+AGG 0.433314 7_2:+86940949 None:intergenic
CCTGCAGATCCCTTTGACGA+GGG 0.434417 7_2:-86938660 Msa1085930:CDS
TTTCAGAGAGTGAGAACAAA+TGG 0.440221 7_2:+86938003 None:intergenic
ACCCAAAGGCGCCGAAGATT+AGG 0.441045 7_2:+86938866 None:intergenic
TGTTGTTGTGTTGTTGAACA+TGG 0.441429 7_2:-86940691 Msa1085930:exon
TTTGCCGGAAGCAGTGACTT+TGG 0.444477 7_2:-86938306 Msa1085930:CDS
GCCATTGATTGTTGTTGTGT+TGG 0.448430 7_2:-86937444 Msa1085930:three_prime_UTR
CAAATCATTGAAGACTTTGA+AGG 0.450196 7_2:-86939188 Msa1085930:CDS
CCCTCGTCAAAGGGATCTGC+AGG 0.450415 7_2:+86938660 None:intergenic
GATGCCAACTTTGCCATATA+CGG 0.454128 7_2:+86937548 None:intergenic
ACTTGCATTATTTCTCTTGG+TGG 0.460932 7_2:+86937349 None:intergenic
GGGGTGCTGATATTCATTCA+TGG 0.461105 7_2:-86940413 Msa1085930:CDS
TACCAAAACATGGAACTTGA+TGG 0.461282 7_2:+86940851 None:intergenic
TTTGACGAGGGTGTTGTGCA+CGG 0.461850 7_2:-86938648 Msa1085930:CDS
AACCTGATACAGAAAGCCTT+TGG 0.463742 7_2:+86938397 None:intergenic
CTTTCTCTGCTGAGCTGTGA+AGG 0.465139 7_2:-86940276 Msa1085930:CDS
AGCTGAGAAAACTTGAGATA+AGG 0.465986 7_2:-86938254 Msa1085930:CDS
TACATCCATTCATTGTTACT+TGG 0.471398 7_2:+86938151 None:intergenic
AATCTACTTGTCAAGATCTC+AGG 0.472486 7_2:+86940507 None:intergenic
TGCTGATATTCATTCATGGT+TGG 0.476550 7_2:-86940409 Msa1085930:CDS
AGGGGCATCCCTTCTTGGGC+CGG 0.481810 7_2:+86938026 None:intergenic
AGGATTTAGCACTGATGGCT+TGG 0.482352 7_2:-86940256 Msa1085930:CDS
GACTGCCAAGTAACAATGAA+TGG 0.488206 7_2:-86938156 Msa1085930:CDS
ACCAACACAACAACAATCAA+TGG 0.488230 7_2:+86937443 None:intergenic
AAGCCTTTGGAGTTTAGTGC+AGG 0.488319 7_2:+86938410 None:intergenic
CCATATACGGTCACATTCCA+AGG 0.490187 7_2:+86937561 None:intergenic
AGAGGACGTAGTGAAGCTTC+CGG 0.490890 7_2:+86938586 None:intergenic
GGAGTTGAGGCTCAAGAGAA+TGG 0.491782 7_2:-86940355 Msa1085930:CDS
GTTGAAGTAATTAAGGAAGA+AGG 0.492228 7_2:-86938096 Msa1085930:CDS
CAGTTATGTGAGCTTGGCAG+TGG 0.493794 7_2:-86939112 Msa1085930:CDS
ATAAGAAGTGTTACACTCAA+AGG 0.496754 7_2:-86940477 Msa1085930:CDS
CACCCTTTCTGGTTTATGGG+TGG 0.500938 7_2:-86939014 Msa1085930:CDS
GTGCACAACACCCTCGTCAA+AGG 0.501470 7_2:+86938650 None:intergenic
TGCACAACACCCTCGTCAAA+GGG 0.502790 7_2:+86938651 None:intergenic
GAGATAAGGGACTGTCCATT+CGG 0.505837 7_2:-86938240 Msa1085930:CDS
GATGCGCTTGAGAAACTTGT+CGG 0.507130 7_2:-86939217 Msa1085930:CDS
TAAGAAGTGTTACACTCAAA+GGG 0.508033 7_2:-86940476 Msa1085930:CDS
TCGATGACAAAAGCGGTGAT+TGG 0.508436 7_2:-86939315 Msa1085930:CDS
CAGAGTATAGAACTTGAAGT+TGG 0.510227 7_2:+86938969 None:intergenic
AGCCGGAAATGAGTGAAGTC+AGG 0.516302 7_2:+86938510 None:intergenic
TTACCTGACAAATGAACCTA+TGG 0.517098 7_2:-86938460 Msa1085930:CDS
AACAATCAATGGCTACATGA+TGG 0.520965 7_2:+86937454 None:intergenic
GTTCTGTTGCCGGCCCAAGA+AGG 0.525623 7_2:-86938035 Msa1085930:CDS
ATTCTCTTGTATGTCAAGCT+CGG 0.532804 7_2:+86939342 None:intergenic
TGTGAAGGATTTAGCACTGA+TGG 0.534547 7_2:-86940261 Msa1085930:CDS
TTCTGTTGCCGGCCCAAGAA+GGG 0.535830 7_2:-86938034 Msa1085930:CDS
GTGACCGTATATGGCAAAGT+TGG 0.535910 7_2:-86937552 Msa1085930:three_prime_UTR
GCTCCAAAGGCCTCATCCAT+AGG 0.536354 7_2:+86938444 None:intergenic
GCCTCAACTCCTCAAGAAAA+GGG 0.537412 7_2:+86940367 None:intergenic
TTGCTGTCTCTGAAGGATGC+CGG 0.538728 7_2:-86938605 Msa1085930:CDS
AGCCACCCATAAACCAGAAA+GGG 0.542673 7_2:+86939012 None:intergenic
TAGGGGTCATGATGCAGAGC+CGG 0.545042 7_2:+86938493 None:intergenic
GGTCTTAACAACTGCTCCAA+AGG 0.546055 7_2:+86938431 None:intergenic
ATCATATTGTCCATTGCTTG+AGG 0.546358 7_2:-86938697 Msa1085930:CDS
CAGCATCATTTGTCATCTGA+TGG 0.546732 7_2:+86938556 None:intergenic
TCCTGCAGATCCCTTTGACG+AGG 0.555334 7_2:-86938661 Msa1085930:CDS
CACAGTTGAAGACAAGGGAC+TGG 0.558137 7_2:-86938730 Msa1085930:CDS
CCTACACTTTGAAGCTCAAG+AGG 0.559487 7_2:-86937967 Msa1085930:intron
TTAATGAAGAGATCTAGAAA+AGG 0.561940 7_2:+86940897 None:intergenic
GACAAGGGACTGGAAGCTGT+TGG 0.564143 7_2:-86938720 Msa1085930:CDS
ACGTTTCTCTGACTTCAACT+TGG 0.564927 7_2:-86940448 Msa1085930:CDS
CCTCTTGAGCTTCAAAGTGT+AGG 0.568176 7_2:+86937967 None:intergenic
AAACTTGGAAACGCTTTCAG+TGG 0.570395 7_2:-86938331 Msa1085930:CDS
GGACCCAACTAGTTGAAAGA+AGG 0.570671 7_2:+86937370 None:intergenic
ATGAGTCAATGAGATCACTT+TGG 0.571140 7_2:-86938185 Msa1085930:CDS
TGACGAGGGTGTTGTGCACG+GGG 0.571274 7_2:-86938646 Msa1085930:CDS
CTTGGTTGCATACCAAAACA+TGG 0.574910 7_2:+86940841 None:intergenic
AATGAGATCACTTTGGATGT+CGG 0.575734 7_2:-86938178 Msa1085930:CDS
AAGCCACCCATAAACCAGAA+AGG 0.576681 7_2:+86939011 None:intergenic
TTCCACCTTCCATATTACTG+AGG 0.577064 7_2:+86937513 None:intergenic
GACAAATGAACCTATGGATG+AGG 0.578886 7_2:-86938454 Msa1085930:CDS
ATTACTTCAACATTCAACCT+CGG 0.585805 7_2:+86938108 None:intergenic
ACACGTAGCTCCTCAAGCAA+TGG 0.587975 7_2:+86938687 None:intergenic
TCATCTGATGGCAAAAGTAG+AGG 0.589318 7_2:+86938568 None:intergenic
TTTCTTTAGTTTGCAAACAG+TGG 0.597043 7_2:-86940590 Msa1085930:CDS
TGTTGTGTTGTTGGACAACA+AGG 0.597948 7_2:-86941011 Msa1085930:five_prime_UTR
AAAAGTGCTGCATCGCCGAA+TGG 0.606996 7_2:+86938225 None:intergenic
CAGAGAGTGAGAACAAATGG+AGG 0.612840 7_2:+86938006 None:intergenic
AGCCTCAGTAATATGGAAGG+TGG 0.616841 7_2:-86937515 Msa1085930:three_prime_UTR
TGCCAAGCTCACATAACTGA+GGG 0.617421 7_2:+86939116 None:intergenic
CGCTTGAGAAACTTGTCGGT+AGG 0.619571 7_2:-86939213 Msa1085930:CDS
AACTTGGTTCCTGAAAATTG+GGG 0.622806 7_2:-86940432 Msa1085930:CDS
AGAGAGTGAGAACAAATGGA+GGG 0.623048 7_2:+86938007 None:intergenic
AAAACATGGAACTTGATGGA+AGG 0.624501 7_2:+86940855 None:intergenic
TCCCTAAATACTCAAATGCG+AGG 0.626376 7_2:+86938364 None:intergenic
TGAAGCCTCAGTAATATGGA+AGG 0.626705 7_2:-86937518 Msa1085930:three_prime_UTR
TCAGTAATATGGAAGGTGGA+AGG 0.628553 7_2:-86937511 Msa1085930:three_prime_UTR
TGTTGTGTTGTTGAACATGG+AGG 0.632665 7_2:-86940688 Msa1085930:exon
AGAGTGATGATGATAAGGAA+AGG 0.636075 7_2:+86940954 None:intergenic
TGTTAGCAAAAGAAAAGCCG+AGG 0.639572 7_2:-86938125 Msa1085930:CDS
CAGGTAATCTGGCTGATTAG+GGG 0.642566 7_2:+86938476 None:intergenic
TGTAGACACAGTTGAAGACA+AGG 0.644710 7_2:-86938736 Msa1085930:CDS
AGACCTGCACTAAACTCCAA+AGG 0.647440 7_2:-86938413 Msa1085930:CDS
AATGACATCGATGACAAAAG+CGG 0.649581 7_2:-86939322 Msa1085930:CDS
CTGCCAAGCTCACATAACTG+AGG 0.656866 7_2:+86939115 None:intergenic
GCTCACATAACTGAGGGGCA+AGG 0.682791 7_2:+86939122 None:intergenic
ACAACGCTGAAAGATTGTCA+AGG 0.689288 7_2:-86940566 Msa1085930:CDS
GAGAGTGAGAACAAATGGAG+GGG 0.695193 7_2:+86938008 None:intergenic
ACGCTGAAAGATTGTCAAGG+AGG 0.697851 7_2:-86940563 Msa1085930:CDS
GCCAAGCTCACATAACTGAG+GGG 0.733620 7_2:+86939117 None:intergenic
GTAGACACAGTTGAAGACAA+GGG 0.743765 7_2:-86938735 Msa1085930:CDS
AAGTTGAAGTCAGAGAAACG+TGG 0.761191 7_2:+86940450 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAAATGTGATTTAAT+AGG - chr7_2:86938595-86938614 Msa1085930:CDS 10.0%
!! AATTAAAATGTGATTTAATA+GGG - chr7_2:86938596-86938615 Msa1085930:CDS 10.0%
!!! ACAAAAAGTTTTTTAATTTT+AGG - chr7_2:86940937-86940956 Msa1085930:five_prime_UTR 10.0%
!!! CAAAAAGTTTTTTAATTTTA+GGG - chr7_2:86940938-86940957 Msa1085930:five_prime_UTR 10.0%
!!! AAAAAGTTTTTTAATTTTAG+GGG - chr7_2:86940939-86940958 Msa1085930:five_prime_UTR 10.0%
!! AAAAAAAAAAATCTCCAAAA+GGG - chr7_2:86937482-86937501 Msa1085930:three_prime_UTR 15.0%
!! CAATAAATACTGATATATTT+AGG + chr7_2:86938128-86938147 None:intergenic 15.0%
!! TAAATCAATCTATGAATTAA+TGG + chr7_2:86938315-86938334 None:intergenic 15.0%
!!! AATTCATAGATTGATTTATT+AGG - chr7_2:86938317-86938336 Msa1085930:CDS 15.0%
!!! ATTTTAATTATGTAACAATG+AGG + chr7_2:86938585-86938604 None:intergenic 15.0%
!! CAAAAAAAAAAATCTCCAAA+AGG - chr7_2:86937481-86937500 Msa1085930:three_prime_UTR 20.0%
!!! ATGTAAATATTTTATGCCAA+CGG + chr7_2:86938391-86938410 None:intergenic 20.0%
!!! CTTTTTAAGATTCTTAAGTA+AGG - chr7_2:86938449-86938468 Msa1085930:CDS 20.0%
!! TTTGAAAATTTGGTATTACT+TGG - chr7_2:86938806-86938825 Msa1085930:intron 20.0%
!!! AAAGAATGATGAAAATGTTT+TGG - chr7_2:86939439-86939458 Msa1085930:intron 20.0%
!! ACTTCTTAGTCTAATTAATT+GGG + chr7_2:86940371-86940390 None:intergenic 20.0%
!! GTTGATTGGTAAAAAAATAA+TGG - chr7_2:86940433-86940452 Msa1085930:CDS 20.0%
!! AAAGTAAAGTGACAAATAAT+TGG + chr7_2:86940575-86940594 None:intergenic 20.0%
!! TTGAATTGAAATATTTATCC+TGG - chr7_2:86941004-86941023 Msa1085930:five_prime_UTR 20.0%
! TTAATGAAGAGATCTAGAAA+AGG + chr7_2:86937324-86937343 None:intergenic 25.0%
!! ACTGAAAATTTTGAATGCAA+AGG + chr7_2:86937405-86937424 None:intergenic 25.0%
! TAAATCTTACTTGCAATTAG+TGG + chr7_2:86937997-86938016 None:intergenic 25.0%
!!! TTGCATTGTTTTTCATTTAC+TGG - chr7_2:86938262-86938281 Msa1085930:CDS 25.0%
! ATTAGGATTCACTAAAATAC+AGG - chr7_2:86938334-86938353 Msa1085930:CDS 25.0%
!!! GTTTAATTTTGATATACCGT+TGG - chr7_2:86938372-86938391 Msa1085930:CDS 25.0%
!!! GTTTTTTGCACATATTCAAT+TGG + chr7_2:86938430-86938449 None:intergenic 25.0%
! TATCAATCAATTATAATCGC+CGG + chr7_2:86938493-86938512 None:intergenic 25.0%
! TGAATCCATATAAATACTTG+TGG - chr7_2:86938548-86938567 Msa1085930:CDS 25.0%
! AAGTTCCACAAGTATTTATA+TGG + chr7_2:86938556-86938575 None:intergenic 25.0%
! ATCATATATGCAGTACTTAA+AGG + chr7_2:86938653-86938672 None:intergenic 25.0%
! ACTGCATATATGATTATCTT+TGG - chr7_2:86938659-86938678 Msa1085930:CDS 25.0%
! TATCGAGTGATTTGAAAATT+TGG - chr7_2:86938796-86938815 Msa1085930:intron 25.0%
! AATTTGGTATTACTTGGATT+TGG - chr7_2:86938812-86938831 Msa1085930:intron 25.0%
! ATCATCTTCTGAATATTACA+TGG - chr7_2:86938839-86938858 Msa1085930:intron 25.0%
! CGATATTTACATCATTGTTT+AGG + chr7_2:86938982-86939001 None:intergenic 25.0%
! ATAAAGAAAATCATACCCAA+AGG + chr7_2:86939369-86939388 None:intergenic 25.0%
! GTTGAATGTTGAAGTAATTA+AGG - chr7_2:86940115-86940134 Msa1085930:intron 25.0%
!! AGTCTAATTAATTGGGTTTT+GGG + chr7_2:86940364-86940383 None:intergenic 25.0%
!! TAGTCTAATTAATTGGGTTT+TGG + chr7_2:86940365-86940384 None:intergenic 25.0%
! CACTTCTTAGTCTAATTAAT+TGG + chr7_2:86940372-86940391 None:intergenic 25.0%
! TATTATATGATTCTGCTCTT+TGG - chr7_2:86940400-86940419 Msa1085930:CDS 25.0%
! TTGGAAAACAAATTGTTGAT+TGG - chr7_2:86940419-86940438 Msa1085930:CDS 25.0%
!!! ATTTTTCATGCCATTTACAA+TGG + chr7_2:86940897-86940916 None:intergenic 25.0%
CAACAACACAACATTGTAAT+TGG + chr7_2:86937200-86937219 None:intergenic 30.0%
CAATTACAATGTTGTGTTGT+TGG - chr7_2:86937198-86937217 Msa1085930:three_prime_UTR 30.0%
!!! ATTTTGAATGCAAAGGTACT+TGG + chr7_2:86937398-86937417 None:intergenic 30.0%
! CTAACTTTAAACTACCCTTT+TGG + chr7_2:86937499-86937518 None:intergenic 30.0%
!! TTTCTTTAGTTTGCAAACAG+TGG - chr7_2:86937628-86937647 Msa1085930:intron 30.0%
AGTGTAACACTTCTTATGTT+TGG + chr7_2:86937738-86937757 None:intergenic 30.0%
!! ATAAGAAGTGTTACACTCAA+AGG - chr7_2:86937741-86937760 Msa1085930:intron 30.0%
!! TAAGAAGTGTTACACTCAAA+GGG - chr7_2:86937742-86937761 Msa1085930:intron 30.0%
!! TGATGAGAGTTTAGAGTTTT+TGG - chr7_2:86937893-86937912 Msa1085930:intron 30.0%
AGTTGTGTGTGAATTTCAAT+TGG + chr7_2:86938067-86938086 None:intergenic 30.0%
AATGAAAAACAATGCAAACC+AGG + chr7_2:86938259-86938278 None:intergenic 30.0%
! GACAAGCATTTTTAATGATC+CGG - chr7_2:86938471-86938490 Msa1085930:CDS 30.0%
CAAATCATTGAAGACTTTGA+AGG - chr7_2:86939030-86939049 Msa1085930:CDS 30.0%
TTGTTCATTGTCCTAATCTT+CGG - chr7_2:86939341-86939360 Msa1085930:CDS 30.0%
TTGGAACATCTACATTATAC+AGG - chr7_2:86939458-86939477 Msa1085930:intron 30.0%
TACATCCATTCATTGTTACT+TGG + chr7_2:86940070-86940089 None:intergenic 30.0%
ATTACTTCAACATTCAACCT+CGG + chr7_2:86940113-86940132 None:intergenic 30.0%
GTTGAAGTAATTAAGGAAGA+AGG - chr7_2:86940122-86940141 Msa1085930:intron 30.0%
TGGTAAAAAAATAATGGCCT+TGG - chr7_2:86940439-86940458 Msa1085930:CDS 30.0%
! AGTGGAAACATCACTATTTT+TGG - chr7_2:86940474-86940493 Msa1085930:CDS 30.0%
!! GTGGAAACATCACTATTTTT+GGG - chr7_2:86940475-86940494 Msa1085930:CDS 30.0%
!!! GCATCATCAACTTTTTCAAA+TGG - chr7_2:86940519-86940538 Msa1085930:CDS 30.0%
!! TAATTTTAGGGGATCATGTT+AGG - chr7_2:86940950-86940969 Msa1085930:five_prime_UTR 30.0%
! AGAGTGATGATGATAAGGAA+AGG + chr7_2:86937267-86937286 None:intergenic 35.0%
! GAACAAGAGTGATGATGATA+AGG + chr7_2:86937272-86937291 None:intergenic 35.0%
AAAACATGGAACTTGATGGA+AGG + chr7_2:86937366-86937385 None:intergenic 35.0%
! TTCCATCAAGTTCCATGTTT+TGG - chr7_2:86937365-86937384 Msa1085930:three_prime_UTR 35.0%
TACCAAAACATGGAACTTGA+TGG + chr7_2:86937370-86937389 None:intergenic 35.0%
! TGTTGTTGTGTTGTTGAACA+TGG - chr7_2:86937527-86937546 Msa1085930:three_prime_UTR 35.0%
!! GAAGTGTTGAAACAAGTTCT+TGG - chr7_2:86937573-86937592 Msa1085930:intron 35.0%
! TCAAGGAGGAATGTTTTCAT+AGG - chr7_2:86937669-86937688 Msa1085930:intron 35.0%
AATCTACTTGTCAAGATCTC+AGG + chr7_2:86937714-86937733 None:intergenic 35.0%
TCAACTTGGTTCCTGAAAAT+TGG - chr7_2:86937784-86937803 Msa1085930:intron 35.0%
CAACTTGGTTCCTGAAAATT+GGG - chr7_2:86937785-86937804 Msa1085930:intron 35.0%
AACTTGGTTCCTGAAAATTG+GGG - chr7_2:86937786-86937805 Msa1085930:intron 35.0%
TGCTGATATTCATTCATGGT+TGG - chr7_2:86937809-86937828 Msa1085930:intron 35.0%
!!! TGAAAAGTACCCTTTTCTTG+AGG - chr7_2:86937842-86937861 Msa1085930:intron 35.0%
TAGGACAAGGATTCTCTAAT+TGG + chr7_2:86938196-86938215 None:intergenic 35.0%
!! GCTAAGATTTGTTGTCTGTA+TGG - chr7_2:86938230-86938249 Msa1085930:CDS 35.0%
TCTGAATATTACATGGATGC+AGG - chr7_2:86938846-86938865 Msa1085930:intron 35.0%
ATTCTCTTGTATGTCAAGCT+CGG + chr7_2:86938879-86938898 None:intergenic 35.0%
AATGACATCGATGACAAAAG+CGG - chr7_2:86938896-86938915 Msa1085930:CDS 35.0%
TCCAGAAAGCTTTACATCAT+TGG - chr7_2:86938937-86938956 Msa1085930:CDS 35.0%
TCCAATGATGTAAAGCTTTC+TGG + chr7_2:86938941-86938960 None:intergenic 35.0%
CAGAGTATAGAACTTGAAGT+TGG + chr7_2:86939252-86939271 None:intergenic 35.0%
ATCATATTGTCCATTGCTTG+AGG - chr7_2:86939521-86939540 Msa1085930:intron 35.0%
TTACCTGACAAATGAACCTA+TGG - chr7_2:86939758-86939777 Msa1085930:intron 35.0%
ACCTCGCATTTGAGTATTTA+GGG - chr7_2:86939853-86939872 Msa1085930:intron 35.0%
!!! TGAAAGCGTTTCCAAGTTTT+TGG + chr7_2:86939886-86939905 None:intergenic 35.0%
! ATCTCAAGTTTTCTCAGCTT+CGG + chr7_2:86939963-86939982 None:intergenic 35.0%
AGCTGAGAAAACTTGAGATA+AGG - chr7_2:86939964-86939983 Msa1085930:intron 35.0%
GCTGAGAAAACTTGAGATAA+GGG - chr7_2:86939965-86939984 Msa1085930:intron 35.0%
ATGAGTCAATGAGATCACTT+TGG - chr7_2:86940033-86940052 Msa1085930:intron 35.0%
AATGAGATCACTTTGGATGT+CGG - chr7_2:86940040-86940059 Msa1085930:intron 35.0%
TATGTTTATCGTTCTGTTGC+CGG - chr7_2:86940173-86940192 Msa1085930:intron 35.0%
TTTCAGAGAGTGAGAACAAA+TGG + chr7_2:86940218-86940237 None:intergenic 35.0%
ATTGAAATGTGCATGCCATA+TGG - chr7_2:86940321-86940340 Msa1085930:CDS 35.0%
! ATAATTTTGTGTTGCAGCCT+TGG - chr7_2:86940640-86940659 Msa1085930:CDS 35.0%
ACAATGAAGCCTCAGTAATA+TGG - chr7_2:86940696-86940715 Msa1085930:five_prime_UTR 35.0%
AAGGTGGAAGGAAGAAAAAT+AGG - chr7_2:86940719-86940738 Msa1085930:five_prime_UTR 35.0%
AGGTGGAAGGAAGAAAAATA+GGG - chr7_2:86940720-86940739 Msa1085930:five_prime_UTR 35.0%
AACAATCAATGGCTACATGA+TGG + chr7_2:86940767-86940786 None:intergenic 35.0%
ACCAACACAACAACAATCAA+TGG + chr7_2:86940778-86940797 None:intergenic 35.0%
TTGCCTTCTTTCAACTAGTT+GGG - chr7_2:86940845-86940864 Msa1085930:five_prime_UTR 35.0%
! ACTTGCATTATTTCTCTTGG+TGG + chr7_2:86940872-86940891 None:intergenic 35.0%
! GACACTTGCATTATTTCTCT+TGG + chr7_2:86940875-86940894 None:intergenic 35.0%
ATGCAAGTGTCCATTGTAAA+TGG - chr7_2:86940884-86940903 Msa1085930:five_prime_UTR 35.0%
GAAATATGTTTGTCTCTTCC+AGG + chr7_2:86941025-86941044 None:intergenic 35.0%
! TGTTGTGTTGTTGGACAACA+AGG - chr7_2:86937207-86937226 Msa1085930:three_prime_UTR 40.0%
CTTGGTTGCATACCAAAACA+TGG + chr7_2:86937380-86937399 None:intergenic 40.0%
! TGTTGTGTTGTTGAACATGG+AGG - chr7_2:86937530-86937549 Msa1085930:three_prime_UTR 40.0%
ACAACGCTGAAAGATTGTCA+AGG - chr7_2:86937652-86937671 Msa1085930:intron 40.0%
AAGTTGAAGTCAGAGAAACG+TGG + chr7_2:86937771-86937790 None:intergenic 40.0%
ACGTTTCTCTGACTTCAACT+TGG - chr7_2:86937770-86937789 Msa1085930:intron 40.0%
! ATATCAGCACCCCAATTTTC+AGG + chr7_2:86937798-86937817 None:intergenic 40.0%
! TGTGAAGGATTTAGCACTGA+TGG - chr7_2:86937957-86937976 Msa1085930:intron 40.0%
! TAGACCTTCCGGACATTTTT+CGG - chr7_2:86938164-86938183 Msa1085930:CDS 40.0%
TAGAGAATCCTTGTCCTATG+AGG - chr7_2:86938198-86938217 Msa1085930:CDS 40.0%
AATCCTTGTCCTATGAGGAT+AGG - chr7_2:86938203-86938222 Msa1085930:CDS 40.0%
ATGGATTCAACTAGCATGCA+TGG + chr7_2:86938537-86938556 None:intergenic 40.0%
TCACACTGCTTATGCTTTCA+GGG + chr7_2:86938700-86938719 None:intergenic 40.0%
ATCACACTGCTTATGCTTTC+AGG + chr7_2:86938701-86938720 None:intergenic 40.0%
!! TTCACACCCTTTCTGGTTTA+TGG - chr7_2:86939200-86939219 Msa1085930:CDS 40.0%
!! TCACACCCTTTCTGGTTTAT+GGG - chr7_2:86939201-86939220 Msa1085930:CDS 40.0%
TGTAGACACAGTTGAAGACA+AGG - chr7_2:86939482-86939501 Msa1085930:intron 40.0%
GTAGACACAGTTGAAGACAA+GGG - chr7_2:86939483-86939502 Msa1085930:intron 40.0%
!!! GGTTTTATTGCTGTCTCTGA+AGG - chr7_2:86939606-86939625 Msa1085930:intron 40.0%
TCATCTGATGGCAAAAGTAG+AGG + chr7_2:86939653-86939672 None:intergenic 40.0%
CAGCATCATTTGTCATCTGA+TGG + chr7_2:86939665-86939684 None:intergenic 40.0%
TCAGGTAATCTGGCTGATTA+GGG + chr7_2:86939746-86939765 None:intergenic 40.0%
GGTTCATTTGTCAGGTAATC+TGG + chr7_2:86939756-86939775 None:intergenic 40.0%
CATCCATAGGTTCATTTGTC+AGG + chr7_2:86939764-86939783 None:intergenic 40.0%
GACAAATGAACCTATGGATG+AGG - chr7_2:86939764-86939783 Msa1085930:intron 40.0%
AACCTGATACAGAAAGCCTT+TGG + chr7_2:86939824-86939843 None:intergenic 40.0%
GACCTCGCATTTGAGTATTT+AGG - chr7_2:86939852-86939871 Msa1085930:intron 40.0%
TCCCTAAATACTCAAATGCG+AGG + chr7_2:86939857-86939876 None:intergenic 40.0%
! AGGGAAGTATGCCAAAAACT+TGG - chr7_2:86939872-86939891 Msa1085930:intron 40.0%
AAACTTGGAAACGCTTTCAG+TGG - chr7_2:86939887-86939906 Msa1085930:intron 40.0%
GACTGCCAAGTAACAATGAA+TGG - chr7_2:86940062-86940081 Msa1085930:intron 40.0%
TGTTAGCAAAAGAAAAGCCG+AGG - chr7_2:86940093-86940112 Msa1085930:intron 40.0%
AGAGAGTGAGAACAAATGGA+GGG + chr7_2:86940214-86940233 None:intergenic 40.0%
CCACTAGTAAGTAGTAACCA+AGG + chr7_2:86940459-86940478 None:intergenic 40.0%
CCTTGGTTACTACTTACTAG+TGG - chr7_2:86940456-86940475 Msa1085930:CDS 40.0%
GATGCCAACTTTGCCATATA+CGG + chr7_2:86940673-86940692 None:intergenic 40.0%
ATTACTGAGGCTTCATTGTC+AGG + chr7_2:86940695-86940714 None:intergenic 40.0%
TGAAGCCTCAGTAATATGGA+AGG - chr7_2:86940700-86940719 Msa1085930:five_prime_UTR 40.0%
TTCCACCTTCCATATTACTG+AGG + chr7_2:86940708-86940727 None:intergenic 40.0%
TCAGTAATATGGAAGGTGGA+AGG - chr7_2:86940707-86940726 Msa1085930:five_prime_UTR 40.0%
GGTGGAAGGAAGAAAAATAG+GGG - chr7_2:86940721-86940740 Msa1085930:five_prime_UTR 40.0%
! GCCATTGATTGTTGTTGTGT+TGG - chr7_2:86940774-86940793 Msa1085930:five_prime_UTR 40.0%
CTTGCCTTCTTTCAACTAGT+TGG - chr7_2:86940844-86940863 Msa1085930:five_prime_UTR 40.0%
ACGCTGAAAGATTGTCAAGG+AGG - chr7_2:86937655-86937674 Msa1085930:intron 45.0%
!! GGGGTGCTGATATTCATTCA+TGG - chr7_2:86937805-86937824 Msa1085930:intron 45.0%
! ACCCTTTTCTTGAGGAGTTG+AGG - chr7_2:86937850-86937869 Msa1085930:intron 45.0%
GCCTCAACTCCTCAAGAAAA+GGG + chr7_2:86937854-86937873 None:intergenic 45.0%
AGCCTCAACTCCTCAAGAAA+AGG + chr7_2:86937855-86937874 None:intergenic 45.0%
!! AGGATTTAGCACTGATGGCT+TGG - chr7_2:86937962-86937981 Msa1085930:intron 45.0%
CAAGATCCTGGATTCGAATC+TGG - chr7_2:86938088-86938107 Msa1085930:CDS 45.0%
CTTCATCCAGATTCGAATCC+AGG + chr7_2:86938097-86938116 None:intergenic 45.0%
TCTACCGAAAAATGTCCGGA+AGG + chr7_2:86938171-86938190 None:intergenic 45.0%
GGTCTCTACCGAAAAATGTC+CGG + chr7_2:86938175-86938194 None:intergenic 45.0%
AAGCCTATCCTCATAGGACA+AGG + chr7_2:86938209-86938228 None:intergenic 45.0%
TTGTCCTATGAGGATAGGCT+TGG - chr7_2:86938208-86938227 Msa1085930:CDS 45.0%
TTAGCCAAGCCTATCCTCAT+AGG + chr7_2:86938215-86938234 None:intergenic 45.0%
TCGATGACAAAAGCGGTGAT+TGG - chr7_2:86938903-86938922 Msa1085930:CDS 45.0%
GATGCGCTTGAGAAACTTGT+CGG - chr7_2:86939001-86939020 Msa1085930:CDS 45.0%
TGCCAAGCTCACATAACTGA+GGG + chr7_2:86939105-86939124 None:intergenic 45.0%
AAGAGTCTTCACACCCTTTC+TGG - chr7_2:86939193-86939212 Msa1085930:CDS 45.0%
AGCCACCCATAAACCAGAAA+GGG + chr7_2:86939209-86939228 None:intergenic 45.0%
AAGCCACCCATAAACCAGAA+AGG + chr7_2:86939210-86939229 None:intergenic 45.0%
GTCCTGACTTCACTCATTTC+CGG - chr7_2:86939706-86939725 Msa1085930:intron 45.0%
CAGGTAATCTGGCTGATTAG+GGG + chr7_2:86939745-86939764 None:intergenic 45.0%
GTCAGGTAATCTGGCTGATT+AGG + chr7_2:86939747-86939766 None:intergenic 45.0%
GGTCTTAACAACTGCTCCAA+AGG + chr7_2:86939790-86939809 None:intergenic 45.0%
AGACCTGCACTAAACTCCAA+AGG - chr7_2:86939805-86939824 Msa1085930:intron 45.0%
!! AAGCCTTTGGAGTTTAGTGC+AGG + chr7_2:86939811-86939830 None:intergenic 45.0%
CTCCAAAGGCTTTCTGTATC+AGG - chr7_2:86939819-86939838 Msa1085930:intron 45.0%
GAGATAAGGGACTGTCCATT+CGG - chr7_2:86939978-86939997 Msa1085930:intron 45.0%
! TGCAGCACTTTTGTCTGGTT+TGG - chr7_2:86940004-86940023 Msa1085930:intron 45.0%
AGAAGGAAGCGATGATAGTC+AGG - chr7_2:86940139-86940158 Msa1085930:intron 45.0%
GAGAGTGAGAACAAATGGAG+GGG + chr7_2:86940213-86940232 None:intergenic 45.0%
CAGAGAGTGAGAACAAATGG+AGG + chr7_2:86940215-86940234 None:intergenic 45.0%
CCTCTTGAGCTTCAAAGTGT+AGG + chr7_2:86940254-86940273 None:intergenic 45.0%
!! CCTACACTTTGAAGCTCAAG+AGG - chr7_2:86940251-86940270 Msa1085930:CDS 45.0%
!!! GGTTTTGGGTAGTTGTGAAG+TGG + chr7_2:86940350-86940369 None:intergenic 45.0%
CCATATACGGTCACATTCCA+AGG + chr7_2:86940660-86940679 None:intergenic 45.0%
CCTTGGAATGTGACCGTATA+TGG - chr7_2:86940657-86940676 Msa1085930:CDS 45.0%
GTGACCGTATATGGCAAAGT+TGG - chr7_2:86940666-86940685 Msa1085930:CDS 45.0%
AGCCTCAGTAATATGGAAGG+TGG - chr7_2:86940703-86940722 Msa1085930:five_prime_UTR 45.0%
GGACCCAACTAGTTGAAAGA+AGG + chr7_2:86940851-86940870 None:intergenic 45.0%
GGAGTTGAGGCTCAAGAGAA+TGG - chr7_2:86937863-86937882 Msa1085930:intron 50.0%
CTTTCTCTGCTGAGCTGTGA+AGG - chr7_2:86937942-86937961 Msa1085930:intron 50.0%
CACACACAACTGCAAGATCC+TGG - chr7_2:86938076-86938095 Msa1085930:CDS 50.0%
GTGATAGACGCTAGACCTTC+CGG - chr7_2:86938153-86938172 Msa1085930:CDS 50.0%
TTGTTGTCTGTATGGCTGCC+TGG - chr7_2:86938238-86938257 Msa1085930:CDS 50.0%
CGCTTGAGAAACTTGTCGGT+AGG - chr7_2:86939005-86939024 Msa1085930:CDS 50.0%
GCCAAGCTCACATAACTGAG+GGG + chr7_2:86939104-86939123 None:intergenic 50.0%
CTGCCAAGCTCACATAACTG+AGG + chr7_2:86939106-86939125 None:intergenic 50.0%
CAGTTATGTGAGCTTGGCAG+TGG - chr7_2:86939106-86939125 Msa1085930:CDS 50.0%
!! CACCCTTTCTGGTTTATGGG+TGG - chr7_2:86939204-86939223 Msa1085930:CDS 50.0%
TCCTAATCTTCGGCGCCTTT+GGG - chr7_2:86939351-86939370 Msa1085930:CDS 50.0%
CACAGTTGAAGACAAGGGAC+TGG - chr7_2:86939488-86939507 Msa1085930:intron 50.0%
ACACGTAGCTCCTCAAGCAA+TGG + chr7_2:86939534-86939553 None:intergenic 50.0%
TGCACAACACCCTCGTCAAA+GGG + chr7_2:86939570-86939589 None:intergenic 50.0%
!! TTTGACGAGGGTGTTGTGCA+CGG - chr7_2:86939570-86939589 Msa1085930:intron 50.0%
! TTGCTGTCTCTGAAGGATGC+CGG - chr7_2:86939613-86939632 Msa1085930:intron 50.0%
AGAGGACGTAGTGAAGCTTC+CGG + chr7_2:86939635-86939654 None:intergenic 50.0%
AGCCGGAAATGAGTGAAGTC+AGG + chr7_2:86939711-86939730 None:intergenic 50.0%
GAACCTATGGATGAGGCCTT+TGG - chr7_2:86939771-86939790 Msa1085930:intron 50.0%
! ACGCTTTCAGTGGCTTTTGC+CGG - chr7_2:86939897-86939916 Msa1085930:intron 50.0%
TTTGCCGGAAGCAGTGACTT+TGG - chr7_2:86939912-86939931 Msa1085930:intron 50.0%
TTGCCGGAAGCAGTGACTTT+GGG - chr7_2:86939913-86939932 Msa1085930:intron 50.0%
CATCCCAAAGTCACTGCTTC+CGG + chr7_2:86939919-86939938 None:intergenic 50.0%
!! AAAAGTGCTGCATCGCCGAA+TGG + chr7_2:86939996-86940015 None:intergenic 50.0%
GTTGTGAAGTGGCTGCCATA+TGG + chr7_2:86940339-86940358 None:intergenic 50.0%
GCTCACATAACTGAGGGGCA+AGG + chr7_2:86939099-86939118 None:intergenic 55.0%
GCCCCTCAGTTATGTGAGCT+TGG - chr7_2:86939100-86939119 Msa1085930:CDS 55.0%
GTCCTAATCTTCGGCGCCTT+TGG - chr7_2:86939350-86939369 Msa1085930:CDS 55.0%
!! ACCCAAAGGCGCCGAAGATT+AGG + chr7_2:86939355-86939374 None:intergenic 55.0%
GACAAGGGACTGGAAGCTGT+TGG - chr7_2:86939498-86939517 Msa1085930:intron 55.0%
TCCTGCAGATCCCTTTGACG+AGG - chr7_2:86939557-86939576 Msa1085930:intron 55.0%
CCTGCAGATCCCTTTGACGA+GGG - chr7_2:86939558-86939577 Msa1085930:intron 55.0%
GTGCACAACACCCTCGTCAA+AGG + chr7_2:86939571-86939590 None:intergenic 55.0%
!! TTGACGAGGGTGTTGTGCAC+GGG - chr7_2:86939571-86939590 Msa1085930:intron 55.0%
GTGCACGGGGTTACTGAATC+AGG - chr7_2:86939585-86939604 Msa1085930:intron 55.0%
TAGGGGTCATGATGCAGAGC+CGG + chr7_2:86939728-86939747 None:intergenic 55.0%
GCTCCAAAGGCCTCATCCAT+AGG + chr7_2:86939777-86939796 None:intergenic 55.0%
GGGATGCAGTCTGTACTTGC+TGG - chr7_2:86939933-86939952 Msa1085930:intron 55.0%
! GGCGATGCAGCACTTTTGTC+TGG - chr7_2:86939999-86940018 Msa1085930:intron 55.0%
TTCTGTTGCCGGCCCAAGAA+GGG - chr7_2:86940184-86940203 Msa1085930:intron 55.0%
!! ATGGAGGGGCATCCCTTCTT+GGG + chr7_2:86940199-86940218 None:intergenic 55.0%
!! AATGGAGGGGCATCCCTTCT+TGG + chr7_2:86940200-86940219 None:intergenic 55.0%
CCCTCGTCAAAGGGATCTGC+AGG + chr7_2:86939561-86939580 None:intergenic 60.0%
!! TGACGAGGGTGTTGTGCACG+GGG - chr7_2:86939572-86939591 Msa1085930:intron 60.0%
GTTCTGTTGCCGGCCCAAGA+AGG - chr7_2:86940183-86940202 Msa1085930:intron 60.0%
!! AGGGGCATCCCTTCTTGGGC+CGG + chr7_2:86940195-86940214 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 86937192 86941048 86937192 ID=Msa1085930;Name=Msa1085930
chr7_2 mRNA 86937192 86941048 86937192 ID=Msa1085930-mRNA-1;Parent=Msa1085930;Name=Msa1085930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=354|1|1|1|0.66|0.5|4|429|573
chr7_2 exon 86937192 86937583 86937192 ID=Msa1085930-mRNA-1:exon:23668;Parent=Msa1085930-mRNA-1
chr7_2 exon 86937968 86938760 86937968 ID=Msa1085930-mRNA-1:exon:23667;Parent=Msa1085930-mRNA-1
chr7_2 exon 86938868 86939372 86938868 ID=Msa1085930-mRNA-1:exon:23666;Parent=Msa1085930-mRNA-1
chr7_2 exon 86940234 86941048 86940234 ID=Msa1085930-mRNA-1:exon:23665;Parent=Msa1085930-mRNA-1
chr7_2 five_prime_UTR 86940695 86941048 86940695 ID=Msa1085930-mRNA-1:five_prime_utr;Parent=Msa1085930-mRNA-1
chr7_2 CDS 86940234 86940694 86940234 ID=Msa1085930-mRNA-1:cds;Parent=Msa1085930-mRNA-1
chr7_2 CDS 86938868 86939372 86938868 ID=Msa1085930-mRNA-1:cds;Parent=Msa1085930-mRNA-1
chr7_2 CDS 86938005 86938760 86938005 ID=Msa1085930-mRNA-1:cds;Parent=Msa1085930-mRNA-1
chr7_2 three_prime_UTR 86937968 86938004 86937968 ID=Msa1085930-mRNA-1:three_prime_utr;Parent=Msa1085930-mRNA-1
chr7_2 three_prime_UTR 86937192 86937583 86937192 ID=Msa1085930-mRNA-1:three_prime_utr;Parent=Msa1085930-mRNA-1
Gene Sequence

>Msa1085930

ATGGAGGAGTGTAAGAGAGACAAAGATGAAGTGTTGAAACAAGTTCTTGGAACAGTGAAGTCACACAAAGACAGAAATTCAGTTTCTTTAGTTTGCAAACAGTGGTACAACGCTGAAAGATTGTCAAGGAGGAATGTTTTCATAGGTAACTGTTATTCTGTCACTCCTGAGATCTTGACAAGTAGATTTCCAAACATAAGAAGTGTTACACTCAAAGGGAAGCCACGTTTCTCTGACTTCAACTTGGTTCCTGAAAATTGGGGTGCTGATATTCATTCATGGTTGGTTGTTTTTGCTGAAAAGTACCCTTTTCTTGAGGAGTTGAGGCTCAAGAGAATGGTTGTTACTGATGAGAGTTTAGAGTTTTTGGCTTTTTCTTTTCATAATTTCAAAGCACTTTCTCTGCTGAGCTGTGAAGGATTTAGCACTGATGGCTTGGCTGCACTTGCCACTAATTGCAAGAATTTAACCGAGCTTGACATACAAGAGAATGACATCGATGACAAAAGCGGTGATTGGTTGAGTTGCTTTCCAGAAAGCTTTACATCATTGGAAGTATTGAACTTCGCTAACCTAAACAATGATGTAAATATCGATGCGCTTGAGAAACTTGTCGGTAGGTGCAAATCATTGAAGACTTTGAAGGTTAACAAAAGCGTAACGCTAGAACAGTTTCAAAGACTTCTTGTCCTTGCCCCTCAGTTATGTGAGCTTGGCAGTGGCTCATTTTCACAAGAGCTGACATGTCAGCAGTATTTAGAGCTCGAAAGTGCGTTCAACAATTGTAAGAGTCTTCACACCCTTTCTGGTTTATGGGTGGCTTCAGCATCAGCACAGTATATCCAACTTCAAGTTCTATACTCTGCATGCACAAATCTGACTTTCTTGAATTTTAGTTATGCTCTTGTTGACAGTGAAGATCTTACTGATCTTCTTGTTCATTGTCCTAATCTTCGGCGCCTTTGGGTTGTAGACACAGTTGAAGACAAGGGACTGGAAGCTGTTGGATCATATTGTCCATTGCTTGAGGAGCTACGTGTTTTTCCTGCAGATCCCTTTGACGAGGGTGTTGTGCACGGGGTTACTGAATCAGGTTTTATTGCTGTCTCTGAAGGATGCCGGAAGCTTCACTACGTCCTCTACTTTTGCCATCAGATGACAAATGATGCTGTTGCTACTGTTGTGCAAAACTGTCCTGACTTCACTCATTTCCGGCTCTGCATCATGACCCCTAATCAGCCAGATTACCTGACAAATGAACCTATGGATGAGGCCTTTGGAGCAGTTGTTAAGACCTGCACTAAACTCCAAAGGCTTTCTGTATCAGGTTATCTAACTGACCTCGCATTTGAGTATTTAGGGAAGTATGCCAAAAACTTGGAAACGCTTTCAGTGGCTTTTGCCGGAAGCAGTGACTTTGGGATGCAGTCTGTACTTGCTGGCTGTCCGAAGCTGAGAAAACTTGAGATAAGGGACTGTCCATTCGGCGATGCAGCACTTTTGTCTGGTTTGGAGAAGTATGAGTCAATGAGATCACTTTGGATGTCGGACTGCCAAGTAACAATGAATGGATGTAGATTGTTAGCAAAAGAAAAGCCGAGGTTGAATGTTGAAGTAATTAAGGAAGAAGGAAGCGATGATAGTCAGGCTGAAAAAGTTTATGTTTATCGTTCTGTTGCCGGCCCAAGAAGGGATGCCCCTCCATTTGTTCTCACTCTCTGA
Protein sequence

>Msa1085930

MEECKRDKDEVLKQVLGTVKSHKDRNSVSLVCKQWYNAERLSRRNVFIGNCYSVTPEILTSRFPNIRSVTLKGKPRFSDFNLVPENWGADIHSWLVVFAEKYPFLEELRLKRMVVTDESLEFLAFSFHNFKALSLLSCEGFSTDGLAALATNCKNLTELDIQENDIDDKSGDWLSCFPESFTSLEVLNFANLNNDVNIDALEKLVGRCKSLKTLKVNKSVTLEQFQRLLVLAPQLCELGSGSFSQELTCQQYLELESAFNNCKSLHTLSGLWVASASAQYIQLQVLYSACTNLTFLNFSYALVDSEDLTDLLVHCPNLRRLWVVDTVEDKGLEAVGSYCPLLEELRVFPADPFDEGVVHGVTESGFIAVSEGCRKLHYVLYFCHQMTNDAVATVVQNCPDFTHFRLCIMTPNQPDYLTNEPMDEAFGAVVKTCTKLQRLSVSGYLTDLAFEYLGKYAKNLETLSVAFAGSSDFGMQSVLAGCPKLRKLEIRDCPFGDAALLSGLEKYESMRSLWMSDCQVTMNGCRLLAKEKPRLNVEVIKEEGSDDSQAEKVYVYRSVAGPRRDAPPFVLTL*