AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844970 MtrunA17_Chr5g0416091 89.015 264 24 4 1 262 1 261 8.33e-152 424
Msa0844970 MtrunA17_Chr8g0362331 63.918 194 63 1 76 262 74 267 2.21e-85 255
Msa0844970 MtrunA17_Chr7g0274781 40.426 188 98 3 82 262 46 226 1.21e-47 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844970 AT1G14410.1 59.144 257 85 5 11 262 22 263 2.11e-96 283
Msa0844970 AT2G02740.1 54.152 277 103 8 1 262 1 268 2.91e-89 266
Msa0844970 AT1G71260.1 41.935 186 103 2 82 262 53 238 1.28e-51 169

Find 82 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTTACTTCTGGCTTTA+TGG 0.135973 5_4:-23605210 None:intergenic
TGAGATGTTAGTATCATTAT+TGG 0.164426 5_4:+23605403 Msa0844970:three_prime_UTR
TACTCTCTATCCTTTCTTCT+TGG 0.176060 5_4:-23599307 None:intergenic
AAAATTTCTCAAACAATTCT+AGG 0.176337 5_4:-23605381 None:intergenic
GAGTGAGTTGGGACTGAAAA+TGG 0.219662 5_4:-23599391 None:intergenic
GGCTGGCGACAGGTGAGGTT+GGG 0.243945 5_4:-23599472 None:intergenic
TCTTCTTCATCTTCCTCTTC+AGG 0.255568 5_4:+23599544 Msa0844970:CDS
AACTACCTTCTACCCATAAA+AGG 0.287714 5_4:-23603211 None:intergenic
TGAGGTGGAGGGAATGGTTT+GGG 0.292578 5_4:-23599508 None:intergenic
TTTATCATGCCATGCCTCTT+AGG 0.293213 5_4:+23605167 Msa0844970:CDS
TTGGTCTGTAGATTAGTAAA+TGG 0.293452 5_4:-23599260 None:intergenic
TAAACTATCTGTGGATGAAA+TGG 0.298088 5_4:+23603138 Msa0844970:CDS
CGGTTTGCAATATTTACTTC+TGG 0.305894 5_4:-23605218 None:intergenic
ACATCCAATGAAGTGAATTC+TGG 0.345501 5_4:-23599804 None:intergenic
TGCAATATTCTAATGACTAT+AGG 0.352382 5_4:+23605287 Msa0844970:three_prime_UTR
TTGAGGTGGAGGGAATGGTT+TGG 0.363411 5_4:-23599509 None:intergenic
AGTCTTCTTCTCTTCTTCTT+CGG 0.365023 5_4:-23605238 None:intergenic
ACCTCCAGAATTCACTTCAT+TGG 0.371286 5_4:+23599800 Msa0844970:CDS
GGTTGAGGGCGTTGAGGTGG+AGG 0.372390 5_4:-23599520 None:intergenic
TGGTCTGTAGATTAGTAAAT+GGG 0.382150 5_4:-23599259 None:intergenic
GCTTTCTGCTCCAATCATAT+TGG 0.384421 5_4:-23600017 None:intergenic
AGGCTGGCGACAGGTGAGGT+TGG 0.402112 5_4:-23599473 None:intergenic
ATCCATTTCTTTACCTCGTG+TGG 0.411585 5_4:+23599435 Msa0844970:CDS
GCTGGCGACAGGTGAGGTTG+GGG 0.411845 5_4:-23599471 None:intergenic
TGGGTTTGTAGTTGTTGTAT+AGG 0.416258 5_4:-23599371 None:intergenic
CTACAGTTTGCTCCTTCTGC+CGG 0.434257 5_4:+23599988 Msa0844970:CDS
AGACTTTGAATGGAACAGAT+AGG 0.435531 5_4:+23605256 Msa0844970:CDS
ATGGGAAATCTAATTAATCT+TGG 0.439383 5_4:+23603157 Msa0844970:CDS
GGGCGTTGAGGTGGAGGGAA+TGG 0.441709 5_4:-23599514 None:intergenic
AGTGAGTTGGGACTGAAAAT+GGG 0.444235 5_4:-23599390 None:intergenic
GAAGGTTGAGGGCGTTGAGG+TGG 0.449595 5_4:-23599523 None:intergenic
CGACCAACGTAAACCCTTAG+TGG 0.451263 5_4:-23599735 None:intergenic
GAAGAGAAGAAGACTTTGAA+TGG 0.455608 5_4:+23605246 Msa0844970:CDS
AAACTATCTGTGGATGAAAT+GGG 0.464987 5_4:+23603139 Msa0844970:CDS
CCAATCATATTGGCGAAAAC+CGG 0.464995 5_4:-23600007 None:intergenic
GAAGATGAAGAAGAAGGTTG+AGG 0.468336 5_4:-23599535 None:intergenic
AAGATGAAGAAGAAGGTTGA+GGG 0.470886 5_4:-23599534 None:intergenic
GAGAAAGGGTATGTTATTGA+AGG 0.478743 5_4:-23599232 None:intergenic
GAAGTGAATTCTGGAGGTAC+AGG 0.480485 5_4:-23599795 None:intergenic
TCATGCCATGCCTCTTAGGT+TGG 0.480625 5_4:+23605171 Msa0844970:CDS
TAGTAAATGGGAAATGAGAA+AGG 0.483317 5_4:-23599247 None:intergenic
CAGTTAGAGAATTGCCACTA+AGG 0.486519 5_4:+23599721 Msa0844970:intron
ACCCACACGAGGTAAAGAAA+TGG 0.501210 5_4:-23599437 None:intergenic
TGTTGATGAAAGAGTGAGTT+GGG 0.501539 5_4:-23599402 None:intergenic
GTGGAGGGAATGGTTTGGGT+TGG 0.510791 5_4:-23599504 None:intergenic
GAAAAGCTCAGGCTGGCGAC+AGG 0.513301 5_4:-23599482 None:intergenic
GGTTTGGGTTGGAAAAGCTC+AGG 0.523617 5_4:-23599493 None:intergenic
TTGGTCGTTCAGTTTACAAA+GGG 0.527190 5_4:+23599751 Msa0844970:CDS
GACTTTGAATGGAACAGATA+GGG 0.528923 5_4:+23605257 Msa0844970:CDS
CAAAGGCATTCCAACCTAAG+AGG 0.533103 5_4:-23605181 None:intergenic
ACTTAGTTTAAACATGTGAC+CGG 0.533326 5_4:-23604076 None:intergenic
GTAGTTGTTGTATAGGACTG+TGG 0.535088 5_4:-23599364 None:intergenic
ATCTAATTAATCTTGGTGCA+AGG 0.535516 5_4:+23603164 Msa0844970:CDS
AGTTAGAGAATTGCCACTAA+GGG 0.538677 5_4:+23599722 Msa0844970:intron
CTGGCGACAGGTGAGGTTGG+GGG 0.539648 5_4:-23599470 None:intergenic
TCTAATTAATCTTGGTGCAA+GGG 0.543790 5_4:+23603165 Msa0844970:CDS
GAAGAAGGTTGAGGGCGTTG+AGG 0.544567 5_4:-23599526 None:intergenic
TCCATTTCTTTACCTCGTGT+GGG 0.547204 5_4:+23599436 Msa0844970:CDS
ACATAAACAACCAAGAAGAA+AGG 0.550458 5_4:+23599297 Msa0844970:five_prime_UTR
ATATGATTGGAGCAGAAAGC+AGG 0.558461 5_4:+23600020 Msa0844970:CDS
GTTGAGGGCGTTGAGGTGGA+GGG 0.560816 5_4:-23599519 None:intergenic
GACTTGTTATGCAGTGATGA+AGG 0.561694 5_4:+23604009 Msa0844970:intron
GTTAATAAGATCATACAAGA+TGG 0.562596 5_4:-23605323 None:intergenic
TGGCTTTATGGAGTCAGCAA+AGG 0.562818 5_4:-23605198 None:intergenic
GAAGAGGAAGATGAAGAAGA+AGG 0.568627 5_4:-23599541 None:intergenic
AGTAAATGGGAAATGAGAAA+GGG 0.574990 5_4:-23599246 None:intergenic
TGACCGGAACCGTCGTGAAG+TGG 0.576610 5_4:-23604060 None:intergenic
TGGGTTGGAAAAGCTCAGGC+TGG 0.582714 5_4:-23599489 None:intergenic
GCATTCAAGATATCTAAAGA+AGG 0.582740 5_4:+23599955 Msa0844970:CDS
CAAAGGGAAAGCTGTGCTCA+CGG 0.588472 5_4:+23599767 Msa0844970:CDS
ACAGGTATTTAAACTATCTG+TGG 0.595168 5_4:+23603129 Msa0844970:intron
GTTGGTCGTTCAGTTTACAA+AGG 0.607110 5_4:+23599750 Msa0844970:CDS
TATTGGCGAAAACCGGCAGA+AGG 0.609525 5_4:-23600000 None:intergenic
GCATTCCAACCTAAGAGGCA+TGG 0.612818 5_4:-23605176 None:intergenic
GTTGTTGTATAGGACTGTGG+TGG 0.614800 5_4:-23599361 None:intergenic
GCTCAGGCTGGCGACAGGTG+AGG 0.615879 5_4:-23599477 None:intergenic
ATTTATCCCTGTCACAAAAG+CGG 0.631693 5_4:+23604275 Msa0844970:CDS
GAGAAAGTGGGACCCACACG+AGG 0.632860 5_4:-23599448 None:intergenic
TCCAATGAAGTGAATTCTGG+AGG 0.645641 5_4:-23599801 None:intergenic
GTGTTGATGAAAGAGTGAGT+TGG 0.675389 5_4:-23599403 None:intergenic
TTGCCACTAAGGGTTTACGT+TGG 0.697937 5_4:+23599732 Msa0844970:CDS
AAGGTGGAGCCACTTCACGA+CGG 0.712557 5_4:+23604051 Msa0844970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATAAAGAAAG+GGG + chr5_4:23600703-23600722 Msa0844970:intron 10.0%
!!! CTTTATAATTTTAAAGAATT+TGG + chr5_4:23603806-23603825 Msa0844970:intron 10.0%
!! CAATAAATATTTACTATTTA+TGG + chr5_4:23603921-23603940 Msa0844970:intron 10.0%
!!! CAAATTTTGTAAAATTATAA+AGG - chr5_4:23603982-23604001 None:intergenic 10.0%
!!! ATTATTGTTTTTTATCATCA+TGG + chr5_4:23599650-23599669 Msa0844970:intron 15.0%
!!! TGTTTTTTTTGTTTAATCAT+AGG + chr5_4:23599828-23599847 Msa0844970:intron 15.0%
!!! TTTAAACCTATTTTCTATTA+TGG + chr5_4:23601542-23601561 Msa0844970:intron 15.0%
!! AAACTTTAGTTATGATTAAT+TGG + chr5_4:23601898-23601917 Msa0844970:intron 15.0%
!!! ATAAAAATTTGAATGTTTTG+AGG + chr5_4:23601957-23601976 Msa0844970:intron 15.0%
!!! AATATACAACATTTTAACTT+AGG - chr5_4:23602631-23602650 None:intergenic 15.0%
!! ATTCAGTAAAATAATTAGAA+GGG - chr5_4:23603248-23603267 None:intergenic 15.0%
!!! AGCATTATTTTTTTTTAAAC+AGG - chr5_4:23603726-23603745 None:intergenic 15.0%
!!! ATTGAATACTTTTAACTATT+CGG - chr5_4:23603755-23603774 None:intergenic 15.0%
!!! AATTTTAAAGAATTTGGAAA+AGG + chr5_4:23603812-23603831 Msa0844970:intron 15.0%
!! AAATTGTTAATATATACTCT+TGG + chr5_4:23604150-23604169 Msa0844970:intron 15.0%
!!! TTTTTTATTTTTACCTGAAG+AGG - chr5_4:23599560-23599579 None:intergenic 20.0%
!! TAACTTATGACATACAATAA+TGG + chr5_4:23599607-23599626 Msa0844970:intron 20.0%
!! AACTTATGACATACAATAAT+GGG + chr5_4:23599608-23599627 Msa0844970:intron 20.0%
!!! TCTAAATTTCTCATGTTTTA+TGG + chr5_4:23599870-23599889 Msa0844970:intron 20.0%
!!! TTTTATGGAATTATGAATGT+TGG + chr5_4:23599885-23599904 Msa0844970:intron 20.0%
!! GTTATTGTTCTTCTATAATT+TGG + chr5_4:23600046-23600065 Msa0844970:intron 20.0%
!! GTTTGTAAAAAAATTGCTAT+TGG + chr5_4:23600539-23600558 Msa0844970:intron 20.0%
!!! TGAAAGAGTCTAAAATTTAA+TGG + chr5_4:23602083-23602102 Msa0844970:intron 20.0%
!!! TTTCATTTTAAACATATCTC+CGG - chr5_4:23602125-23602144 None:intergenic 20.0%
!! ATTATTCAGATATTGCATTT+CGG - chr5_4:23602173-23602192 None:intergenic 20.0%
!! AATGCAATATCTGAATAATA+AGG + chr5_4:23602174-23602193 Msa0844970:intron 20.0%
!! ACTGTAATATTATTTATGCA+TGG + chr5_4:23602823-23602842 Msa0844970:intron 20.0%
!! CTGTAATATTATTTATGCAT+GGG + chr5_4:23602824-23602843 Msa0844970:intron 20.0%
!! TTTACAAAATGTACTATACA+AGG - chr5_4:23603011-23603030 None:intergenic 20.0%
!! CATTCAGTAAAATAATTAGA+AGG - chr5_4:23603249-23603268 None:intergenic 20.0%
!! TATGCTATAAACACTTAATT+AGG + chr5_4:23603627-23603646 Msa0844970:intron 20.0%
!!! TAAAGTGAGAAAAGTTTTAA+AGG + chr5_4:23604032-23604051 Msa0844970:CDS 20.0%
!!! AAACTTTTTCTAAAATAAGC+TGG - chr5_4:23604451-23604470 None:intergenic 20.0%
!! AGTAAAAAAAACTACATGTA+TGG - chr5_4:23604755-23604774 None:intergenic 20.0%
!! AGTAAAAAAAACTACATGTA+TGG - chr5_4:23604755-23604774 None:intergenic 20.0%
!!! TGTTTTTTAATGTAGCTTTT+AGG + chr5_4:23604965-23604984 Msa0844970:intron 20.0%
!! AAAATTTCTCAAACAATTCT+AGG - chr5_4:23605384-23605403 None:intergenic 20.0%
!!! TATGTTCTGTTACTGATTTT+TGG - chr5_4:23599282-23599301 None:intergenic 25.0%
!!! GGTAAAGAAATGGATTTTTT+GGG - chr5_4:23599430-23599449 None:intergenic 25.0%
!!! AGGTAAAGAAATGGATTTTT+TGG - chr5_4:23599431-23599450 None:intergenic 25.0%
! TTGGACTGTTTATTTAGTTA+TGG + chr5_4:23599904-23599923 Msa0844970:intron 25.0%
!! GTACTTATTTATTAGTCTCT+TGG + chr5_4:23600389-23600408 Msa0844970:intron 25.0%
! CAAAAAATGGTGTAAATGTA+GGG - chr5_4:23600475-23600494 None:intergenic 25.0%
!!! CAATTTTTTTACAAACTGCA+GGG - chr5_4:23601447-23601466 None:intergenic 25.0%
!!! CAATTTTTTTACAAACTGCA+GGG + chr5_4:23601447-23601466 Msa0844970:intron 25.0%
! AATAGGTTTAAATGTGTCAT+TGG - chr5_4:23601534-23601553 None:intergenic 25.0%
! TTGATGCCATAATAGAAAAT+AGG - chr5_4:23601551-23601570 None:intergenic 25.0%
! TGACTAAACAAAACTTCTAA+AGG - chr5_4:23601740-23601759 None:intergenic 25.0%
!! TCATAACTAAAGTTTTCGTA+GGG - chr5_4:23601893-23601912 None:intergenic 25.0%
!! ATCATAACTAAAGTTTTCGT+AGG - chr5_4:23601894-23601913 None:intergenic 25.0%
!! TTCATTTTAAACATATCTCC+GGG - chr5_4:23602124-23602143 None:intergenic 25.0%
! AAATATTCTGCAAGCAAAAT+GGG - chr5_4:23602581-23602600 None:intergenic 25.0%
! TAAATATTCTGCAAGCAAAA+TGG - chr5_4:23602582-23602601 None:intergenic 25.0%
! AACTGTAATATTATTTGTGC+AGG + chr5_4:23602918-23602937 Msa0844970:intron 25.0%
! ATTACGTAAAAGCAAATTGA+TGG - chr5_4:23603089-23603108 None:intergenic 25.0%
! ATGGGAAATCTAATTAATCT+TGG + chr5_4:23603157-23603176 Msa0844970:CDS 25.0%
!!! GCTATTTTCATTAACTATTC+TGG - chr5_4:23603521-23603540 None:intergenic 25.0%
! GAAAAGGATAACATATGTTA+AGG + chr5_4:23603828-23603847 Msa0844970:intron 25.0%
!! CAACTCTTTGAGAAATAAAT+TGG - chr5_4:23603886-23603905 None:intergenic 25.0%
! ATATATTAACAATTTCCCGA+TGG - chr5_4:23604145-23604164 None:intergenic 25.0%
! ATTGAAGTTATATTAGTGCA+GGG - chr5_4:23604190-23604209 None:intergenic 25.0%
! AATTGAAGTTATATTAGTGC+AGG - chr5_4:23604191-23604210 None:intergenic 25.0%
!!! ATTGTTTTGTCAATTTTCGA+AGG + chr5_4:23604216-23604235 Msa0844970:intron 25.0%
!!! ATCTACACTTGAATTTTAGT+GGG - chr5_4:23604407-23604426 None:intergenic 25.0%
!! TATCTACACTTGAATTTTAG+TGG - chr5_4:23604408-23604427 None:intergenic 25.0%
! ATATCACCTTACTTATTTAG+AGG + chr5_4:23604425-23604444 Msa0844970:intron 25.0%
! AAATGTGATTGTATCTTCTA+TGG - chr5_4:23604512-23604531 None:intergenic 25.0%
! AAAACTTGTCTAGCTAAATT+AGG + chr5_4:23604590-23604609 Msa0844970:intron 25.0%
!! GTCTAAGACAGTTTATAATT+AGG + chr5_4:23604674-23604693 Msa0844970:intron 25.0%
! TAATTAGGAATGAAAAGTTC+CGG + chr5_4:23604689-23604708 Msa0844970:intron 25.0%
! AACATTGAATAAACGTAATC+CGG - chr5_4:23604711-23604730 None:intergenic 25.0%
! TTGTGATTCTTGTAAATATG+TGG + chr5_4:23604729-23604748 Msa0844970:intron 25.0%
! AAGCTACATTAAAAAACAAC+TGG - chr5_4:23604963-23604982 None:intergenic 25.0%
!!! AATATTTACTTCTGGCTTTA+TGG - chr5_4:23605213-23605232 None:intergenic 25.0%
! TGCAATATTCTAATGACTAT+AGG + chr5_4:23605287-23605306 Msa0844970:three_prime_UTR 25.0%
! GTTAATAAGATCATACAAGA+TGG - chr5_4:23605326-23605345 None:intergenic 25.0%
! TGAGATGTTAGTATCATTAT+TGG + chr5_4:23605403-23605422 Msa0844970:three_prime_UTR 25.0%
AGTAAATGGGAAATGAGAAA+GGG - chr5_4:23599249-23599268 None:intergenic 30.0%
TAGTAAATGGGAAATGAGAA+AGG - chr5_4:23599250-23599269 None:intergenic 30.0%
TGGTCTGTAGATTAGTAAAT+GGG - chr5_4:23599262-23599281 None:intergenic 30.0%
TTGGTCTGTAGATTAGTAAA+TGG - chr5_4:23599263-23599282 None:intergenic 30.0%
ACATAAACAACCAAGAAGAA+AGG + chr5_4:23599297-23599316 Msa0844970:five_prime_UTR 30.0%
!! TTTTGTGTGTTTTTGTAGTC+AGG + chr5_4:23599931-23599950 Msa0844970:intron 30.0%
!! TTTGTGTGTTTTTGTAGTCA+GGG + chr5_4:23599932-23599951 Msa0844970:intron 30.0%
GCATTCAAGATATCTAAAGA+AGG + chr5_4:23599955-23599974 Msa0844970:CDS 30.0%
!! GTTCTTCTATAATTTGGTGT+CGG + chr5_4:23600052-23600071 Msa0844970:intron 30.0%
CTTAGTGGAATTTGAACAAA+CGG + chr5_4:23600143-23600162 Msa0844970:intron 30.0%
TTGTACTAAATCTAGTATCG+CGG - chr5_4:23600177-23600196 None:intergenic 30.0%
AGTACAATGCTGTCAAATAT+TGG + chr5_4:23600190-23600209 Msa0844970:intron 30.0%
! TGTCAAATATTGGCTACTAT+AGG + chr5_4:23600200-23600219 Msa0844970:intron 30.0%
AAATCCAATGTTGTCAATTG+TGG - chr5_4:23600368-23600387 None:intergenic 30.0%
TCTAGGTTTAAATGTGTCAT+TGG + chr5_4:23600448-23600467 Msa0844970:intron 30.0%
CCAAAAAATGGTGTAAATGT+AGG - chr5_4:23600476-23600495 None:intergenic 30.0%
!!! CCTACATTTACACCATTTTT+TGG + chr5_4:23600473-23600492 Msa0844970:intron 30.0%
!!! GCAATTTTTTTACAAACTGC+AGG - chr5_4:23601446-23601465 None:intergenic 30.0%
AAAACACGATACAAAGAGAT+AGG + chr5_4:23600739-23600758 Msa0844970:intron 30.0%
AAACACGATACAAAGAGATA+GGG + chr5_4:23600740-23600759 Msa0844970:intron 30.0%
ATTACACTGAAGTAGAATCA+TGG - chr5_4:23600917-23600936 None:intergenic 30.0%
AATTGCAATTGCACAAATCT+TGG - chr5_4:23601112-23601131 None:intergenic 30.0%
TGATATGCAGTCCTTAAAAT+TGG + chr5_4:23601150-23601169 Msa0844970:intron 30.0%
! GATTTGAGCATCCAATTTTA+AGG - chr5_4:23601164-23601183 None:intergenic 30.0%
TTTAACAGCAGTTTAACAGA+AGG + chr5_4:23601416-23601435 Msa0844970:intron 30.0%
!!! GCAATTTTTTTACAAACTGC+AGG + chr5_4:23601446-23601465 Msa0844970:intron 30.0%
!!! TCCTTGCACTTTTTTTTGTT+TGG - chr5_4:23601480-23601499 None:intergenic 30.0%
CAAAAAATGGTGTAAATGCA+GGG + chr5_4:23601507-23601526 Msa0844970:intron 30.0%
CTACATGTTATATCTTCAGT+GGG - chr5_4:23601575-23601594 None:intergenic 30.0%
TCTACATGTTATATCTTCAG+TGG - chr5_4:23601576-23601595 None:intergenic 30.0%
!!! TGATCCTACTTAGTTTTGAA+TGG + chr5_4:23602004-23602023 Msa0844970:intron 30.0%
ATAGCCATTCAAAACTAAGT+AGG - chr5_4:23602011-23602030 None:intergenic 30.0%
!!! TGGTTAGTTTTTTTTCTTCC+CGG + chr5_4:23602103-23602122 Msa0844970:intron 30.0%
!! TAGGAACTAAGAAGTACTAT+GGG - chr5_4:23602298-23602317 None:intergenic 30.0%
TGTCACAATTCGAAATTGAT+AGG - chr5_4:23602551-23602570 None:intergenic 30.0%
GCATATAATCTCTGTAAGAT+TGG - chr5_4:23602726-23602745 None:intergenic 30.0%
TCTTACAGAGATTATATGCA+TGG + chr5_4:23602727-23602746 Msa0844970:intron 30.0%
CTTACAGAGATTATATGCAT+GGG + chr5_4:23602728-23602747 Msa0844970:intron 30.0%
ATAACTTTGAACCTAACTCA+AGG + chr5_4:23602773-23602792 Msa0844970:intron 30.0%
TAACTTTGAACCTAACTCAA+GGG + chr5_4:23602774-23602793 Msa0844970:intron 30.0%
TCACCAAACATAAGCAAAAA+CGG - chr5_4:23602954-23602973 None:intergenic 30.0%
! GCTTATGTTTGGTGAAATTA+AGG + chr5_4:23602959-23602978 Msa0844970:intron 30.0%
ACAGGTATTTAAACTATCTG+TGG + chr5_4:23603129-23603148 Msa0844970:intron 30.0%
TAAACTATCTGTGGATGAAA+TGG + chr5_4:23603138-23603157 Msa0844970:CDS 30.0%
AAACTATCTGTGGATGAAAT+GGG + chr5_4:23603139-23603158 Msa0844970:CDS 30.0%
! ATCTAATTAATCTTGGTGCA+AGG + chr5_4:23603164-23603183 Msa0844970:CDS 30.0%
! TCTAATTAATCTTGGTGCAA+GGG + chr5_4:23603165-23603184 Msa0844970:CDS 30.0%
ATAGACTTTCCTTCTCAAAT+AGG + chr5_4:23603326-23603345 Msa0844970:intron 30.0%
TGGTGTCTTCAAATATGTAA+TGG + chr5_4:23603360-23603379 Msa0844970:intron 30.0%
CTTCAAATATGTAATGGTCA+CGG + chr5_4:23603366-23603385 Msa0844970:intron 30.0%
TTCAAATATGTAATGGTCAC+GGG + chr5_4:23603367-23603386 Msa0844970:intron 30.0%
TCAAATAACACAATCCAAAC+AGG - chr5_4:23603393-23603412 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr5_4:23603486-23603505 None:intergenic 30.0%
GTCATGCTAACATTAAATCA+CGG - chr5_4:23603785-23603804 None:intergenic 30.0%
TATGGAATCCTTAACATGTA+AGG + chr5_4:23603939-23603958 Msa0844970:intron 30.0%
ATGGAATCCTTAACATGTAA+GGG + chr5_4:23603940-23603959 Msa0844970:intron 30.0%
!!! AGTGAGAAAAGTTTTAAAGG+TGG + chr5_4:23604035-23604054 Msa0844970:CDS 30.0%
ACTTAGTTTAAACATGTGAC+CGG - chr5_4:23604079-23604098 None:intergenic 30.0%
TTGAATCAAAACAAAGGTAG+GGG - chr5_4:23604367-23604386 None:intergenic 30.0%
CTTGAATCAAAACAAAGGTA+GGG - chr5_4:23604368-23604387 None:intergenic 30.0%
ACTTGAATCAAAACAAAGGT+AGG - chr5_4:23604369-23604388 None:intergenic 30.0%
ACACACTTGAATCAAAACAA+AGG - chr5_4:23604373-23604392 None:intergenic 30.0%
! TTAAAAAACAACTGGTTTCG+TGG - chr5_4:23604955-23604974 None:intergenic 30.0%
! GAGAAAGGGTATGTTATTGA+AGG - chr5_4:23599235-23599254 None:intergenic 35.0%
TACTCTCTATCCTTTCTTCT+TGG - chr5_4:23599310-23599329 None:intergenic 35.0%
TGGGTTTGTAGTTGTTGTAT+AGG - chr5_4:23599374-23599393 None:intergenic 35.0%
! TGTTGATGAAAGAGTGAGTT+GGG - chr5_4:23599405-23599424 None:intergenic 35.0%
AAGATGAAGAAGAAGGTTGA+GGG - chr5_4:23599537-23599556 None:intergenic 35.0%
AGTTAGAGAATTGCCACTAA+GGG + chr5_4:23599722-23599741 Msa0844970:intron 35.0%
TTGGTCGTTCAGTTTACAAA+GGG + chr5_4:23599751-23599770 Msa0844970:CDS 35.0%
ACATCCAATGAAGTGAATTC+TGG - chr5_4:23599807-23599826 None:intergenic 35.0%
!! TTGTGTGTTTTTGTAGTCAG+GGG + chr5_4:23599933-23599952 Msa0844970:intron 35.0%
! ATAGCTGCTATTTGACAACA+CGG - chr5_4:23600121-23600140 None:intergenic 35.0%
AAATAGCAGCTATTGCTTAG+TGG + chr5_4:23600128-23600147 Msa0844970:intron 35.0%
TGATCCACAATTGACAACAT+TGG + chr5_4:23600361-23600380 Msa0844970:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr5_4:23600502-23600521 Msa0844970:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - chr5_4:23601476-23601495 None:intergenic 35.0%
! AGCCAAACAAAAAAAAGTGC+AGG - chr5_4:23601475-23601494 None:intergenic 35.0%
TTTAACAGCGGTTTAACAGA+AGG - chr5_4:23600566-23600585 None:intergenic 35.0%
ACCGCTGTTAAAAAAACAGA+CGG + chr5_4:23600574-23600593 Msa0844970:intron 35.0%
!!! TCCGTCTGTTTTTTTAACAG+CGG - chr5_4:23600578-23600597 None:intergenic 35.0%
AACACGATACAAAGAGATAG+GGG + chr5_4:23600741-23600760 Msa0844970:intron 35.0%
ATGCTCAAATCAGAACTCAA+AGG + chr5_4:23601173-23601192 Msa0844970:intron 35.0%
TGCTCAAATCAGAACTCAAA+GGG + chr5_4:23601174-23601193 Msa0844970:intron 35.0%
CAGTTTAACAGAAGGATCAA+TGG + chr5_4:23601424-23601443 Msa0844970:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+AGG + chr5_4:23601476-23601495 Msa0844970:intron 35.0%
CAAGGACTGAAACCAAAAAA+TGG + chr5_4:23601494-23601513 Msa0844970:intron 35.0%
!!! CCTGCATTTACACCATTTTT+TGG - chr5_4:23601509-23601528 None:intergenic 35.0%
CCAAAAAATGGTGTAAATGC+AGG + chr5_4:23601506-23601525 Msa0844970:intron 35.0%
TACCAGCAGCAATTAAGATT+TGG - chr5_4:23601670-23601689 None:intergenic 35.0%
AAGAGAAAGTTTGTGTCACA+GGG - chr5_4:23601715-23601734 None:intergenic 35.0%
AGTTAACTCACAGAAACGTA+CGG + chr5_4:23602047-23602066 Msa0844970:intron 35.0%
!! CTAGGAACTAAGAAGTACTA+TGG - chr5_4:23602299-23602318 None:intergenic 35.0%
TAGAAACATGAACAAACCCA+CGG + chr5_4:23602338-23602357 Msa0844970:intron 35.0%
AGTTTGCAATGAATCCAATG+AGG + chr5_4:23602366-23602385 Msa0844970:intron 35.0%
ATGAATCCAATGAGGCAATA+AGG + chr5_4:23602374-23602393 Msa0844970:intron 35.0%
ACAAAAGAACGAAAGATGGT+GGG - chr5_4:23602467-23602486 None:intergenic 35.0%
ATGCACAAAAGAACGAAAGA+TGG - chr5_4:23602471-23602490 None:intergenic 35.0%
TTGTGACACTATGTATTCTC+TGG + chr5_4:23602507-23602526 Msa0844970:intron 35.0%
! ACTCTCGAGTTTGATAACTT+CGG + chr5_4:23602856-23602875 Msa0844970:intron 35.0%
!! GTTCCGTTTTTGCTTATGTT+TGG + chr5_4:23602948-23602967 Msa0844970:intron 35.0%
! TCATATCAGTTGCTACTTGT+TGG - chr5_4:23603062-23603081 None:intergenic 35.0%
AGTTGTCTTTACTTGAACAC+AGG + chr5_4:23603111-23603130 Msa0844970:intron 35.0%
AACTACCTTCTACCCATAAA+AGG - chr5_4:23603214-23603233 None:intergenic 35.0%
ACTTTCCTTCTCAAATAGGA+AGG + chr5_4:23603330-23603349 Msa0844970:intron 35.0%
CTTTCCTTCTCAAATAGGAA+GGG + chr5_4:23603331-23603350 Msa0844970:intron 35.0%
AAATCCCTTCCTATTTGAGA+AGG - chr5_4:23603338-23603357 None:intergenic 35.0%
TTCTCAAATAGGAAGGGATT+TGG + chr5_4:23603337-23603356 Msa0844970:intron 35.0%
! GAAAACAGCTTATGGTCTTA+TGG - chr5_4:23603478-23603497 None:intergenic 35.0%
ATTAGGCTGTTTATCCAAAC+AGG + chr5_4:23603644-23603663 Msa0844970:intron 35.0%
TTAGGCTGTTTATCCAAACA+GGG + chr5_4:23603645-23603664 Msa0844970:intron 35.0%
GCGTATGAATCTGCATATAT+GGG - chr5_4:23603671-23603690 None:intergenic 35.0%
TGCGTATGAATCTGCATATA+TGG - chr5_4:23603672-23603691 None:intergenic 35.0%
AATATGTACTTCCCTTCCAT+CGG + chr5_4:23604126-23604145 Msa0844970:intron 35.0%
TTAACAATTTCCCGATGGAA+GGG - chr5_4:23604140-23604159 None:intergenic 35.0%
ATTAACAATTTCCCGATGGA+AGG - chr5_4:23604141-23604160 None:intergenic 35.0%
ATTTATCCCTGTCACAAAAG+CGG + chr5_4:23604275-23604294 Msa0844970:CDS 35.0%
TGAATCAAAACAAAGGTAGG+GGG - chr5_4:23604366-23604385 None:intergenic 35.0%
! TATGCCATTTGCATAAGAAG+TGG + chr5_4:23604615-23604634 Msa0844970:intron 35.0%
! ATGCCATTTGCATAAGAAGT+GGG + chr5_4:23604616-23604635 Msa0844970:intron 35.0%
GTAATCATTGTATTCAGCTC+TGG + chr5_4:23605008-23605027 Msa0844970:intron 35.0%
AGCAAAAAACATGTTGTCGA+GGG - chr5_4:23605075-23605094 None:intergenic 35.0%
AAGCAAAAAACATGTTGTCG+AGG - chr5_4:23605076-23605095 None:intergenic 35.0%
CGGTTTGCAATATTTACTTC+TGG - chr5_4:23605221-23605240 None:intergenic 35.0%
AGTCTTCTTCTCTTCTTCTT+CGG - chr5_4:23605241-23605260 None:intergenic 35.0%
GAAGAGAAGAAGACTTTGAA+TGG + chr5_4:23605246-23605265 Msa0844970:CDS 35.0%
AGACTTTGAATGGAACAGAT+AGG + chr5_4:23605256-23605275 Msa0844970:CDS 35.0%
GACTTTGAATGGAACAGATA+GGG + chr5_4:23605257-23605276 Msa0844970:CDS 35.0%
GTAGTTGTTGTATAGGACTG+TGG - chr5_4:23599367-23599386 None:intergenic 40.0%
! AGTGAGTTGGGACTGAAAAT+GGG - chr5_4:23599393-23599412 None:intergenic 40.0%
! GTGTTGATGAAAGAGTGAGT+TGG - chr5_4:23599406-23599425 None:intergenic 40.0%
ATCCATTTCTTTACCTCGTG+TGG + chr5_4:23599435-23599454 Msa0844970:CDS 40.0%
TCCATTTCTTTACCTCGTGT+GGG + chr5_4:23599436-23599455 Msa0844970:CDS 40.0%
GAAGATGAAGAAGAAGGTTG+AGG - chr5_4:23599538-23599557 None:intergenic 40.0%
GAAGAGGAAGATGAAGAAGA+AGG - chr5_4:23599544-23599563 None:intergenic 40.0%
TCTTCTTCATCTTCCTCTTC+AGG + chr5_4:23599544-23599563 Msa0844970:CDS 40.0%
CAGTTAGAGAATTGCCACTA+AGG + chr5_4:23599721-23599740 Msa0844970:intron 40.0%
GTTGGTCGTTCAGTTTACAA+AGG + chr5_4:23599750-23599769 Msa0844970:CDS 40.0%
ACCTCCAGAATTCACTTCAT+TGG + chr5_4:23599800-23599819 Msa0844970:CDS 40.0%
TCCAATGAAGTGAATTCTGG+AGG - chr5_4:23599804-23599823 None:intergenic 40.0%
CCAATCATATTGGCGAAAAC+CGG - chr5_4:23600010-23600029 None:intergenic 40.0%
GCTTTCTGCTCCAATCATAT+TGG - chr5_4:23600020-23600039 None:intergenic 40.0%
ATATGATTGGAGCAGAAAGC+AGG + chr5_4:23600020-23600039 Msa0844970:CDS 40.0%
AGTACAACGTTGTCAAGTAG+CGG + chr5_4:23600277-23600296 Msa0844970:intron 40.0%
CATTGTAGTGCAGTGGAATT+TGG + chr5_4:23600317-23600336 Msa0844970:intron 40.0%
CAGGGACTGAAACCAAAAAA+TGG - chr5_4:23600488-23600507 None:intergenic 40.0%
!!! TTTGTTTTTAGTGTGCCACG+TGG - chr5_4:23600627-23600646 None:intergenic 40.0%
ACACGATACAAAGAGATAGG+GGG + chr5_4:23600742-23600761 Msa0844970:intron 40.0%
ACGAGAAGGGAATTGCAAAA+TGG - chr5_4:23600811-23600830 None:intergenic 40.0%
TATCACACCAGAAACGAGAA+GGG - chr5_4:23600824-23600843 None:intergenic 40.0%
ATATCACACCAGAAACGAGA+AGG - chr5_4:23600825-23600844 None:intergenic 40.0%
! AAGCCAAATCTGATTCGCTT+TGG - chr5_4:23600958-23600977 None:intergenic 40.0%
TAGTGAATACCTCTGTTCCA+TGG + chr5_4:23601055-23601074 Msa0844970:intron 40.0%
GCTTGAAAATATCAGAGCCA+TGG - chr5_4:23601075-23601094 None:intergenic 40.0%
!! GGCTCTGATATTTTCAAGCT+TGG + chr5_4:23601076-23601095 Msa0844970:intron 40.0%
AGGACTGCATATCAATTCTC+AGG - chr5_4:23601144-23601163 None:intergenic 40.0%
AAATCAGAACTCAAAGGGAG+TGG + chr5_4:23601179-23601198 Msa0844970:intron 40.0%
AGTGAACTTAGAGTAGAGAG+AGG + chr5_4:23601213-23601232 Msa0844970:intron 40.0%
TTGAATTTGAGTGCGACCAT+TGG + chr5_4:23601238-23601257 Msa0844970:intron 40.0%
GTAACTGTGTTCATCAGCAA+TGG - chr5_4:23601296-23601315 None:intergenic 40.0%
GACCAAATCTTAATTGCTGC+TGG + chr5_4:23601665-23601684 Msa0844970:intron 40.0%
GTGTCACAGGGGAAAATTTA+AGG - chr5_4:23601703-23601722 None:intergenic 40.0%
AGAGAAAGTTTGTGTCACAG+GGG - chr5_4:23601714-23601733 None:intergenic 40.0%
GAAGAGAAAGTTTGTGTCAC+AGG - chr5_4:23601716-23601735 None:intergenic 40.0%
TAGGGTGAAAAATACACAGC+TGG - chr5_4:23601875-23601894 None:intergenic 40.0%
GTTAACTCACAGAAACGTAC+GGG + chr5_4:23602048-23602067 Msa0844970:intron 40.0%
! CGATGATATTTTGTGCACTG+TGG - chr5_4:23602202-23602221 None:intergenic 40.0%
TGTTCACTTCCTTTGCAGAT+GGG - chr5_4:23602273-23602292 None:intergenic 40.0%
TTGTTCACTTCCTTTGCAGA+TGG - chr5_4:23602274-23602293 None:intergenic 40.0%
CATTCACCTTATTGCCTCAT+TGG - chr5_4:23602383-23602402 None:intergenic 40.0%
CACAAAAGAACGAAAGATGG+TGG - chr5_4:23602468-23602487 None:intergenic 40.0%
ATAACTTCGGACCTAACTCA+AGG + chr5_4:23602869-23602888 Msa0844970:intron 40.0%
TAACTTCGGACCTAACTCAA+GGG + chr5_4:23602870-23602889 Msa0844970:intron 40.0%
TCAAATAGGAAGGGATTTGG+TGG + chr5_4:23603340-23603359 Msa0844970:intron 40.0%
ACATGTGCCCTTACATGTTA+AGG - chr5_4:23603950-23603969 None:intergenic 40.0%
!! GACTTGTTATGCAGTGATGA+AGG + chr5_4:23604009-23604028 Msa0844970:intron 40.0%
ATATGTACTTCCCTTCCATC+GGG + chr5_4:23604127-23604146 Msa0844970:intron 40.0%
GAAGTTATATTAGTGCAGGG+TGG - chr5_4:23604187-23604206 None:intergenic 40.0%
! AGCTGGCCTCTAAATAAGTA+AGG - chr5_4:23604434-23604453 None:intergenic 40.0%
! ACAATAAAATTGGCTTCGCC+CGG + chr5_4:23604797-23604816 Msa0844970:intron 40.0%
! ACAATAAAATTGGCTTCGCC+CGG + chr5_4:23604797-23604816 Msa0844970:intron 40.0%
TTTATCATGCCATGCCTCTT+AGG + chr5_4:23605167-23605186 Msa0844970:CDS 40.0%
GTTGTTGTATAGGACTGTGG+TGG - chr5_4:23599364-23599383 None:intergenic 45.0%
! GAGTGAGTTGGGACTGAAAA+TGG - chr5_4:23599394-23599413 None:intergenic 45.0%
ACCCACACGAGGTAAAGAAA+TGG - chr5_4:23599440-23599459 None:intergenic 45.0%
TTGCCACTAAGGGTTTACGT+TGG + chr5_4:23599732-23599751 Msa0844970:CDS 45.0%
! GAAGTGAATTCTGGAGGTAC+AGG - chr5_4:23599798-23599817 None:intergenic 45.0%
! CCGGTTTTCGCCAATATGAT+TGG + chr5_4:23600007-23600026 Msa0844970:CDS 45.0%
GCTATAGCATTGTAGTGCAG+TGG + chr5_4:23600310-23600329 Msa0844970:intron 45.0%
GATACAAAGAGATAGGGGGT+GGG + chr5_4:23600746-23600765 Msa0844970:intron 45.0%
! AGGGGGTGGGAATGAATTTT+AGG + chr5_4:23600759-23600778 Msa0844970:intron 45.0%
! GGGGGTGGGAATGAATTTTA+GGG + chr5_4:23600760-23600779 Msa0844970:intron 45.0%
TGCAATTCCCTTCTCGTTTC+TGG + chr5_4:23600814-23600833 Msa0844970:intron 45.0%
CTGCCAAAGCGAATCAGATT+TGG + chr5_4:23600952-23600971 Msa0844970:intron 45.0%
GCTTCGAGGTTCTCAATTTG+AGG + chr5_4:23600974-23600993 Msa0844970:intron 45.0%
ATATCAGAGCCATGGAACAG+AGG - chr5_4:23601067-23601086 None:intergenic 45.0%
! TTCATGGACTGCTGAGGAAA+AGG + chr5_4:23601270-23601289 Msa0844970:intron 45.0%
! ACCGAGGATCTTAGTTCTTG+TGG + chr5_4:23601314-23601333 Msa0844970:intron 45.0%
CCCACAAGAACTAAGATCCT+CGG - chr5_4:23601318-23601337 None:intergenic 45.0%
! CCGAGGATCTTAGTTCTTGT+GGG + chr5_4:23601315-23601334 Msa0844970:intron 45.0%
! CGAGGATCTTAGTTCTTGTG+GGG + chr5_4:23601316-23601335 Msa0844970:intron 45.0%
CATTAAGCACCCATCTGCAA+AGG + chr5_4:23602261-23602280 Msa0844970:intron 45.0%
CTTAGTTCCTAGCACAAACG+AGG + chr5_4:23602307-23602326 Msa0844970:intron 45.0%
CATTGCAAACTTGCAACCGT+GGG - chr5_4:23602357-23602376 None:intergenic 45.0%
TCATTGCAAACTTGCAACCG+TGG - chr5_4:23602358-23602377 None:intergenic 45.0%
AACCTAACTCAAGGGAGTTG+AGG + chr5_4:23602782-23602801 Msa0844970:intron 45.0%
!! CAAACTCCGCTTTTGTGACA+GGG - chr5_4:23604284-23604303 None:intergenic 45.0%
CCTCCCACTTCTTATGCAAA+TGG - chr5_4:23604622-23604641 None:intergenic 45.0%
CCATTTGCATAAGAAGTGGG+AGG + chr5_4:23604619-23604638 Msa0844970:intron 45.0%
GAAGTGGGAGGAAATCTTCA+AGG + chr5_4:23604631-23604650 Msa0844970:intron 45.0%
TCTAACACACTGAAGGTCTC+CGG - chr5_4:23604911-23604930 None:intergenic 45.0%
ACGTCAGTCTAACACACTGA+AGG - chr5_4:23604918-23604937 None:intergenic 45.0%
! AACTGGTTTCGTGGTGTAGT+TGG - chr5_4:23604946-23604965 None:intergenic 45.0%
!! CAAAGGCATTCCAACCTAAG+AGG - chr5_4:23605184-23605203 None:intergenic 45.0%
!! TGGCTTTATGGAGTCAGCAA+AGG - chr5_4:23605201-23605220 None:intergenic 45.0%
!!! TTATAATATATATATTTTCT+AGG + chr5_4:23600431-23600450 Msa0844970:intron 5.0%
!! TAAAAATAAAAAATAAAGAA+AGG + chr5_4:23600701-23600720 Msa0844970:intron 5.0%
!! AAAAATAAAAAATAAAGAAA+GGG + chr5_4:23600702-23600721 Msa0844970:intron 5.0%
!!! AAATTTTGTAAAATTATAAA+GGG - chr5_4:23603981-23604000 None:intergenic 5.0%
!! AAAAATTAAAACAATAAAAT+TGG + chr5_4:23604787-23604806 Msa0844970:intron 5.0%
!! AAAAATTAAAACAATAAAAT+TGG + chr5_4:23604787-23604806 Msa0844970:intron 5.0%
!! GGTTTGGGTTGGAAAAGCTC+AGG - chr5_4:23599496-23599515 None:intergenic 50.0%
TGAGGTGGAGGGAATGGTTT+GGG - chr5_4:23599511-23599530 None:intergenic 50.0%
TTGAGGTGGAGGGAATGGTT+TGG - chr5_4:23599512-23599531 None:intergenic 50.0%
CGACCAACGTAAACCCTTAG+TGG - chr5_4:23599738-23599757 None:intergenic 50.0%
CAAAGGGAAAGCTGTGCTCA+CGG + chr5_4:23599767-23599786 Msa0844970:CDS 50.0%
! CTACAGTTTGCTCCTTCTGC+CGG + chr5_4:23599988-23600007 Msa0844970:CDS 50.0%
TATTGGCGAAAACCGGCAGA+AGG - chr5_4:23600003-23600022 None:intergenic 50.0%
CGATACAAAGAGATAGGGGG+TGG + chr5_4:23600745-23600764 Msa0844970:intron 50.0%
TGATTCGCTTTGGCAGAACG+AGG - chr5_4:23600948-23600967 None:intergenic 50.0%
! GCGAATCAGATTTGGCTTCG+AGG + chr5_4:23600960-23600979 Msa0844970:intron 50.0%
GCTGATGAACACAGTTACCG+AGG + chr5_4:23601298-23601317 Msa0844970:intron 50.0%
CACAGAAACGTACGGGTTTG+AGG + chr5_4:23602055-23602074 Msa0844970:intron 50.0%
TCCTAGCACAAACGAGGTCA+TGG + chr5_4:23602313-23602332 Msa0844970:intron 50.0%
TCCATGACCTCGTTTGTGCT+AGG - chr5_4:23602317-23602336 None:intergenic 50.0%
GGTTTCAGCTAGTCAGAGCT+AGG - chr5_4:23602408-23602427 None:intergenic 50.0%
! TTGGAGCACTTGGAAGAGCT+AGG - chr5_4:23602429-23602448 None:intergenic 50.0%
TCTTCCAAGTGCTCCAACGA+GGG + chr5_4:23602432-23602451 Msa0844970:intron 50.0%
GTCCTCAACTCCCTTGAGTT+AGG - chr5_4:23602787-23602806 None:intergenic 50.0%
AACTCAAGGGAGTTGAGGAC+AGG + chr5_4:23602787-23602806 Msa0844970:intron 50.0%
ACTCAAGGGAGTTGAGGACA+GGG + chr5_4:23602788-23602807 Msa0844970:intron 50.0%
GACCTAACTCAAGGGAGTTG+AGG + chr5_4:23602878-23602897 Msa0844970:intron 50.0%
GTCCTCAACTCCCTTGAGTT+AGG - chr5_4:23602787-23602806 None:intergenic 50.0%
AACTCAAGGGAGTTGAGGAC+AGG + chr5_4:23602787-23602806 Msa0844970:intron 50.0%
ACTCAAGGGAGTTGAGGACA+GGG + chr5_4:23602788-23602807 Msa0844970:intron 50.0%
CTTGTGAGACTGCTTGAGAG+AGG + chr5_4:23603428-23603447 Msa0844970:intron 50.0%
AGACTGCTTGAGAGAGGTCA+TGG + chr5_4:23603434-23603453 Msa0844970:intron 50.0%
CTGCATATATGGGCCCTGTT+TGG - chr5_4:23603661-23603680 None:intergenic 50.0%
!! GCAAACTCCGCTTTTGTGAC+AGG - chr5_4:23604285-23604304 None:intergenic 50.0%
TCTCTCTCTCTCTCTACCCT+TGG + chr5_4:23604337-23604356 Msa0844970:intron 50.0%
CAAAGCCAATCTTCCGCGAA+TGG + chr5_4:23605048-23605067 Msa0844970:intron 50.0%
TCATGCCATGCCTCTTAGGT+TGG + chr5_4:23605171-23605190 Msa0844970:CDS 50.0%
GCATTCCAACCTAAGAGGCA+TGG - chr5_4:23605179-23605198 None:intergenic 50.0%
GTGAGGTTGGGGGAGAAAGT+GGG - chr5_4:23599463-23599482 None:intergenic 55.0%
! TGGGTTGGAAAAGCTCAGGC+TGG - chr5_4:23599492-23599511 None:intergenic 55.0%
! GTGGAGGGAATGGTTTGGGT+TGG - chr5_4:23599507-23599526 None:intergenic 55.0%
!! GAAGAAGGTTGAGGGCGTTG+AGG - chr5_4:23599529-23599548 None:intergenic 55.0%
! AAAACAGACGGAGTGCCACG+TGG + chr5_4:23600586-23600605 Msa0844970:intron 55.0%
CGTGCAATAACTGGTCCACG+TGG - chr5_4:23600604-23600623 None:intergenic 55.0%
ACCAGTTATTGCACGCCACG+TGG + chr5_4:23600609-23600628 Msa0844970:intron 55.0%
TTCGCTTTGGCAGAACGAGG+TGG - chr5_4:23600945-23600964 None:intergenic 55.0%
CCATGAACGACTCGCACCAA+TGG - chr5_4:23601257-23601276 None:intergenic 55.0%
CCATTGGTGCGAGTCGTTCA+TGG + chr5_4:23601254-23601273 Msa0844970:intron 55.0%
! GAGTCGTTCATGGACTGCTG+AGG + chr5_4:23601264-23601283 Msa0844970:intron 55.0%
CTCTTCCAAGTGCTCCAACG+AGG + chr5_4:23602431-23602450 Msa0844970:intron 55.0%
CTTCCAAGTGCTCCAACGAG+GGG + chr5_4:23602433-23602452 Msa0844970:intron 55.0%
GTAATGGTCACGGGCCTGTT+TGG + chr5_4:23603376-23603395 Msa0844970:intron 55.0%
AAGGTGGAGCCACTTCACGA+CGG + chr5_4:23604051-23604070 Msa0844970:CDS 55.0%
CAAAGGTAGGGGGTGACCAA+GGG - chr5_4:23604356-23604375 None:intergenic 55.0%
ACAAAGGTAGGGGGTGACCA+AGG - chr5_4:23604357-23604376 None:intergenic 55.0%
TATGGCCACAGTTCGAGTCC+GGG - chr5_4:23604818-23604837 None:intergenic 55.0%
GTATGGCCACAGTTCGAGTC+CGG - chr5_4:23604819-23604838 None:intergenic 55.0%
AGGGACCATTCGCGGAAGAT+TGG - chr5_4:23605056-23605075 None:intergenic 55.0%
TGTTGTCGAGGGACCATTCG+CGG - chr5_4:23605064-23605083 None:intergenic 55.0%
GAGAAAGTGGGACCCACACG+AGG - chr5_4:23599451-23599470 None:intergenic 60.0%
GGTGAGGTTGGGGGAGAAAG+TGG - chr5_4:23599464-23599483 None:intergenic 60.0%
GAAAAGCTCAGGCTGGCGAC+AGG - chr5_4:23599485-23599504 None:intergenic 60.0%
!! GTTGAGGGCGTTGAGGTGGA+GGG - chr5_4:23599522-23599541 None:intergenic 60.0%
!! GAAGGTTGAGGGCGTTGAGG+TGG - chr5_4:23599526-23599545 None:intergenic 60.0%
GCCACGTGGCGTGCAATAAC+TGG - chr5_4:23600613-23600632 None:intergenic 60.0%
GCTTTGGCAGAACGAGGTGG+AGG - chr5_4:23600942-23600961 None:intergenic 60.0%
! GTTCCCCTCGTTGGAGCACT+TGG - chr5_4:23602439-23602458 None:intergenic 60.0%
TGGGACTGAGTTCCCCTCGT+TGG - chr5_4:23602448-23602467 None:intergenic 60.0%
GAGCCACTTCACGACGGTTC+CGG + chr5_4:23604057-23604076 Msa0844970:CDS 60.0%
TGACCGGAACCGTCGTGAAG+TGG - chr5_4:23604063-23604082 None:intergenic 60.0%
! AAGGTCTCCGGTTCGAGTCC+GGG - chr5_4:23604899-23604918 None:intergenic 60.0%
! GAAGGTCTCCGGTTCGAGTC+CGG - chr5_4:23604900-23604919 None:intergenic 60.0%
CTGGCGACAGGTGAGGTTGG+GGG - chr5_4:23599473-23599492 None:intergenic 65.0%
GCTGGCGACAGGTGAGGTTG+GGG - chr5_4:23599474-23599493 None:intergenic 65.0%
GGCTGGCGACAGGTGAGGTT+GGG - chr5_4:23599475-23599494 None:intergenic 65.0%
AGGCTGGCGACAGGTGAGGT+TGG - chr5_4:23599476-23599495 None:intergenic 65.0%
!! GGGCGTTGAGGTGGAGGGAA+TGG - chr5_4:23599517-23599536 None:intergenic 65.0%
!! GGTTGAGGGCGTTGAGGTGG+AGG - chr5_4:23599523-23599542 None:intergenic 65.0%
CTTCGCCCGGACTCGAACTG+TGG + chr5_4:23604810-23604829 Msa0844970:intron 65.0%
GCTCAGGCTGGCGACAGGTG+AGG - chr5_4:23599480-23599499 None:intergenic 70.0%
GGCTTCGCCCGGACTCGAAC+CGG + chr5_4:23604808-23604827 Msa0844970:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 23599208 23605499 23599208 ID=Msa0844970;Name=Msa0844970
chr5_4 mRNA 23599208 23605499 23599208 ID=Msa0844970-mRNA-1;Parent=Msa0844970;Name=Msa0844970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=132|1|1|1|1|1|7|222|262
chr5_4 exon 23599208 23599565 23599208 ID=Msa0844970-mRNA-1:exon:9660;Parent=Msa0844970-mRNA-1
chr5_4 exon 23599724 23599824 23599724 ID=Msa0844970-mRNA-1:exon:9661;Parent=Msa0844970-mRNA-1
chr5_4 exon 23599949 23600041 23599949 ID=Msa0844970-mRNA-1:exon:9662;Parent=Msa0844970-mRNA-1
chr5_4 exon 23603133 23603227 23603133 ID=Msa0844970-mRNA-1:exon:9663;Parent=Msa0844970-mRNA-1
chr5_4 exon 23604023 23604096 23604023 ID=Msa0844970-mRNA-1:exon:9664;Parent=Msa0844970-mRNA-1
chr5_4 exon 23604238 23604326 23604238 ID=Msa0844970-mRNA-1:exon:9665;Parent=Msa0844970-mRNA-1
chr5_4 exon 23605167 23605499 23605167 ID=Msa0844970-mRNA-1:exon:9666;Parent=Msa0844970-mRNA-1
chr5_4 five_prime_UTR 23599208 23599339 23599208 ID=Msa0844970-mRNA-1:five_prime_utr;Parent=Msa0844970-mRNA-1
chr5_4 CDS 23599340 23599565 23599340 ID=Msa0844970-mRNA-1:cds;Parent=Msa0844970-mRNA-1
chr5_4 CDS 23599724 23599824 23599724 ID=Msa0844970-mRNA-1:cds;Parent=Msa0844970-mRNA-1
chr5_4 CDS 23599949 23600041 23599949 ID=Msa0844970-mRNA-1:cds;Parent=Msa0844970-mRNA-1
chr5_4 CDS 23603133 23603227 23603133 ID=Msa0844970-mRNA-1:cds;Parent=Msa0844970-mRNA-1
chr5_4 CDS 23604023 23604096 23604023 ID=Msa0844970-mRNA-1:cds;Parent=Msa0844970-mRNA-1
chr5_4 CDS 23604238 23604326 23604238 ID=Msa0844970-mRNA-1:cds;Parent=Msa0844970-mRNA-1
chr5_4 CDS 23605167 23605277 23605167 ID=Msa0844970-mRNA-1:cds;Parent=Msa0844970-mRNA-1
chr5_4 three_prime_UTR 23605278 23605499 23605278 ID=Msa0844970-mRNA-1:three_prime_utr;Parent=Msa0844970-mRNA-1
Gene Sequence

>Msa0844970

ATGAAGATGTTGCAATTGCAACCACCACAGTCCTATACAACAACTACAAACCCATTTTCAGTCCCAACTCACTCTTTCATCAACACTCCCAAAAAATCCATTTCTTTACCTCGTGTGGGTCCCACTTTCTCCCCCAACCTCACCTGTCGCCAGCCTGAGCTTTTCCAACCCAAACCATTCCCTCCACCTCAACGCCCTCAACCTTCTTCTTCATCTTCCTCTTCAGTTAGAGAATTGCCACTAAGGGTTTACGTTGGTCGTTCAGTTTACAAAGGGAAAGCTGTGCTCACGGTGTCTCCTGTACCTCCAGAATTCACTTCATTGGATTCAGGGGCATTCAAGATATCTAAAGAAGGTTTGATGTTGCTACAGTTTGCTCCTTCTGCCGGTTTTCGCCAATATGATTGGAGCAGAAAGCAGGTATTTAAACTATCTGTGGATGAAATGGGAAATCTAATTAATCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCACGATCCTTTTATGGGTAGAAGTGATGAAGGTAAAGTGAGAAAAGTTTTAAAGGTGGAGCCACTTCACGACGGTTCCGGTCACATGTTTAAACTAAGTGTTCAAAACAAGCTCAAGAACATCGATGAGAACATATTTATCCCTGTCACAAAAGCGGAGTTTGCAGTTTTCAATTCACTTTTCAATTTTATCATGCCATGCCTCTTAGGTTGGAATGCCTTTGCTGACTCCATAAAGCCAGAAGTAAATATTGCAAACCGAAGAAGAAGAGAAGAAGACTTTGAATGGAACAGATAG

Protein sequence

>Msa0844970

MKMLQLQPPQSYTTTTNPFSVPTHSFINTPKKSISLPRVGPTFSPNLTCRQPELFQPKPFPPPQRPQPSSSSSSSVRELPLRVYVGRSVYKGKAVLTVSPVPPEFTSLDSGAFKISKEGLMLLQFAPSAGFRQYDWSRKQVFKLSVDEMGNLINLGARESCEFFHDPFMGRSDEGKVRKVLKVEPLHDGSGHMFKLSVQNKLKNIDENIFIPVTKAEFAVFNSLFNFIMPCLLGWNAFADSIKPEVNIANRRRREEDFEWNR*