AlfalfaGEDB | Msa0881080

M. sativa cultivar zhongmu-4 / Msa0881080

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881080	XP_003610259.1	89.381	113	7	2	1	108	1	113	1.36e-62	196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881080	G7JFH3	89.381	113	7	2	1	108	1	113	6.50e-63	196

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0594390	Msa0881080	0.805599	1.235306e-49	-8.615850e-47
Msa0881080	Msa0944510	0.803030	4.234509e-49	-8.615850e-47
Msa0881080	Msa0972730	0.810853	9.375636e-51	-8.615850e-47
Msa0881080	Msa1190910	0.801978	6.976012e-49	-8.615850e-47
Msa0881080	Msa1222360	0.955007	8.136743e-113	-8.615850e-47
Msa0881080	Msa1406580	0.904028	1.882403e-79	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881080	MtrunA17_Chr4g0073501	89.381	113	7	2	1	108	1	113	1.25e-66	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881080	AT4G30845.1	43.810	105	55	2	7	107	8	112	3.53e-25	91.7

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Find 102 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATTTAGATTCTAGA+TGG	0.369994	6_1:-28059453	None:intergenic
AAAATGAAAAGAACACAAAT+GGG	0.511180	6_1:-28057594	None:intergenic
AAAGATCAAGAAAGGGTTAA+TGG	0.279129	6_1:-28058259	None:intergenic
AAATGAAGCAGCAACATTGT+AGG	0.433862	6_1:-28059262	None:intergenic
AACATGGATCAACTGCAGCA+AGG	0.650199	6_1:+28058474	Msa0881080:three_prime_UTR
AACCCGGAAGAAGAAGAAGA+AGG	0.566369	6_1:-28057157	None:intergenic
AACTATCCGTCGTTAATTTA+AGG	0.150030	6_1:-28058605	None:intergenic
AAGAAGAAGAAGGAGAAAGG+GGG	0.531958	6_1:-28057147	None:intergenic
AAGACCATAAATATGCAGAC+AGG	0.565975	6_1:+28058553	Msa0881080:three_prime_UTR
AATCAGATAATTGTTTGATG+TGG	0.600452	6_1:-28058165	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATGTGAATGGTTTAATTC+AGG	+	chr6_1:28057490-28057509	Msa0881080:intron	30.0%
ATGGTTTAATTCAGGTATAG+CGG	+	chr6_1:28057498-28057517	Msa0881080:intron	30.0%
GTCTGACTAATTTGATTCTT+TGG	-	chr6_1:28057628-28057647	None:intergenic	30.0%
GGATCAAACTCTTAATTACT+TGG	+	chr6_1:28058027-28058046	Msa0881080:three_prime_UTR	30.0%
AAAGATCAAGAAAGGGTTAA+TGG	-	chr6_1:28058262-28058281	None:intergenic	30.0%
TTGATGGAAAGATCAAGAAA+GGG	-	chr6_1:28058269-28058288	None:intergenic	30.0%
ATTGATGGAAAGATCAAGAA+AGG	-	chr6_1:28058270-28058289	None:intergenic	30.0%
TAAACCTGTCTGCATATTTA+TGG	-	chr6_1:28058560-28058579	None:intergenic	30.0%
ACTATCCGTCGTTAATTTAA+GGG	-	chr6_1:28058607-28058626	None:intergenic	30.0%
AACTATCCGTCGTTAATTTA+AGG	-	chr6_1:28058608-28058627	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	28057142	28059574	28057142	ID=Msa0881080;Name=Msa0881080
chr6_1	mRNA	28057142	28059574	28057142	ID=Msa0881080-mRNA-1;Parent=Msa0881080;Name=Msa0881080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=91\|1\|1\|1\|0.5\|0.33\|3\|1759\|108
chr6_1	exon	28057142	28057429	28057142	ID=Msa0881080-mRNA-1:exon:6985;Parent=Msa0881080-mRNA-1
chr6_1	exon	28057512	28058866	28057512	ID=Msa0881080-mRNA-1:exon:6986;Parent=Msa0881080-mRNA-1
chr6_1	exon	28059041	28059574	28059041	ID=Msa0881080-mRNA-1:exon:6987;Parent=Msa0881080-mRNA-1
chr6_1	five_prime_UTR	28057142	28057232	28057142	ID=Msa0881080-mRNA-1:five_prime_utr;Parent=Msa0881080-mRNA-1
chr6_1	CDS	28057233	28057429	28057233	ID=Msa0881080-mRNA-1:cds;Parent=Msa0881080-mRNA-1
chr6_1	CDS	28057512	28057641	28057512	ID=Msa0881080-mRNA-1:cds;Parent=Msa0881080-mRNA-1
chr6_1	three_prime_UTR	28057642	28058866	28057642	ID=Msa0881080-mRNA-1:three_prime_utr;Parent=Msa0881080-mRNA-1
chr6_1	three_prime_UTR	28059041	28059574	28059041	ID=Msa0881080-mRNA-1:three_prime_utr;Parent=Msa0881080-mRNA-1

Gene Sequence	>Msa0881080 ATGGAAGTCATAGGAAGGAGCTTTAGCGTTTTATGTCCCACTCCTTCTCTTTCAGCAAGAAGGAGGTTTTGTACAACATTGGCTAAAAAGAAAGATGTCCAAGACAACAACGACTCTCAACTACCATTGACAGTTTCAAAATCAAATCTTGCTCGTGCTGCCATTGGAGTCTTTGGCCTGGGATTCATTGATGCAGGGTATAGCGGAGACTGGTCAAGGATTGGAGTGATAACACAGCAGAATGAGGAATTCCTAAAGCTTGCAGCTTTTCTAGTGGTTCCCATTTGTGTTCTTTTCATTTTTTTCCTGCCCAAAGAATCAAATTAG
Protein sequence	>Msa0881080 MEVIGRSFSVLCPTPSLSARRRFCTTLAKKKDVQDNNDSQLPLTVSKSNLARAAIGVFGLGFIDAGYSGDWSRIGVITQQNEEFLKLAAFLVVPICVLFIFFLPKESN*