AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0594390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594390 MtrunA17_Chr4g0013261 87.850 107 12 1 1 107 1 106 1.08e-61 184
Msa0594390 MtrunA17_Chr4g0013251 77.570 107 23 1 1 107 1 106 1.52e-54 166
Msa0594390 MtrunA17_Chr4g0012951 69.159 107 31 1 1 107 1 105 1.56e-45 142
Msa0594390 MtrunA17_Chr4g0013001 65.421 107 35 1 1 107 1 105 9.17e-43 135
Msa0594390 MtrunA17_Chr4g0012991 65.421 107 35 1 1 107 56 160 4.19e-42 136
Msa0594390 MtrunA17_Chr4g0012961 63.551 107 37 1 1 107 1 105 1.02e-41 133
Msa0594390 MtrunA17_Chr4g0013211 48.598 107 53 2 1 107 1 105 1.07e-25 92.8
Msa0594390 MtrunA17_Chr2g0309241 42.593 108 58 3 1 107 1 105 6.61e-23 85.5
Msa0594390 MtrunA17_Chr4g0012891 49.038 104 45 4 11 107 14 116 1.72e-21 82.4
Msa0594390 MtrunA17_Chr7g0244641 36.937 111 64 2 4 108 1 111 2.62e-20 79.3
Msa0594390 MtrunA17_Chr7g0244691 42.593 108 59 2 2 107 3 109 2.80e-20 79.0
Msa0594390 MtrunA17_Chr7g0244671 34.545 110 66 2 4 107 1 110 1.67e-19 77.8
Msa0594390 MtrunA17_Chr4g0012901 38.889 108 64 2 1 107 5 111 2.77e-19 76.6
Msa0594390 MtrunA17_Chr7g0244831 41.509 106 57 3 4 107 7 109 1.23e-18 74.7
Msa0594390 MtrunA17_Chr7g0244841 41.837 98 54 3 11 107 13 108 1.68e-18 74.7
Msa0594390 MtrunA17_Chr4g0012921 38.889 108 65 1 1 107 1 108 5.53e-18 73.2
Msa0594390 MtrunA17_Chr3g0107481 33.981 103 67 1 5 107 3 104 1.69e-17 72.0
Msa0594390 MtrunA17_Chr7g0244811 37.500 104 61 2 1 102 5 106 5.08e-17 70.9
Msa0594390 MtrunA17_Chr7g0244741 37.615 109 65 1 2 107 3 111 1.38e-14 64.7
Msa0594390 MtrunA17_Chr3g0095931 31.313 99 64 3 12 107 15 112 2.74e-14 63.5
Msa0594390 MtrunA17_Chr4g0012931 32.727 110 69 3 1 107 1 108 5.20e-14 63.5
Msa0594390 MtrunA17_Chr7g0244721 33.333 108 70 1 2 107 3 110 5.55e-14 63.2
Msa0594390 MtrunA17_Chr7g0233431 34.000 100 60 2 9 107 27 121 9.38e-14 62.8
Msa0594390 MtrunA17_Chr7g0244821 35.514 107 67 2 2 107 3 108 1.41e-13 62.0
Msa0594390 MtrunA17_Chr3g0105001 36.905 84 48 3 27 106 31 113 6.18e-13 60.5
Msa0594390 MtrunA17_Chr3g0104951 31.481 108 68 4 4 106 7 113 6.19e-13 60.5
Msa0594390 MtrunA17_Chr3g0104931 31.481 108 68 4 4 106 7 113 6.19e-13 60.5
Msa0594390 MtrunA17_Chr3g0104941 31.481 108 68 4 4 106 7 113 6.19e-13 60.5
Msa0594390 MtrunA17_Chr3g0095991 30.556 108 69 4 4 106 7 113 8.09e-13 60.1
Msa0594390 MtrunA17_Chr1g0165761 37.273 110 62 3 4 107 1 109 8.63e-13 59.7
Msa0594390 MtrunA17_Chr3g0105021 36.905 84 48 3 27 106 31 113 1.03e-12 59.7
Msa0594390 MtrunA17_Chr3g0105011 36.905 84 48 3 27 106 31 113 1.03e-12 59.7
Msa0594390 MtrunA17_Chr3g0104981 36.905 84 48 3 27 106 31 113 1.05e-12 59.7
Msa0594390 MtrunA17_Chr3g0104971 36.905 84 48 3 27 106 31 113 1.12e-12 59.7
Msa0594390 MtrunA17_Chr7g0244681 35.514 107 68 1 2 107 3 109 1.49e-12 59.3
Msa0594390 MtrunA17_Chr3g0104921 36.905 84 48 3 27 106 21 103 1.52e-12 58.9
Msa0594390 MtrunA17_Chr3g0104911 36.905 84 48 3 27 106 21 103 1.52e-12 58.9
Msa0594390 MtrunA17_Chr3g0095951 30.556 108 69 4 4 106 7 113 2.37e-12 58.9
Msa0594390 MtrunA17_Chr3g0104991 36.905 84 48 3 27 106 31 113 2.40e-12 58.9
Msa0594390 MtrunA17_Chr3g0105041 31.481 108 68 4 4 106 7 113 2.67e-12 58.5
Msa0594390 MtrunA17_Chr3g0096021 30.556 108 69 4 4 106 7 113 2.97e-12 58.5
Msa0594390 MtrunA17_Chr3g0104901 31.132 106 67 4 6 106 9 113 3.72e-12 58.2
Msa0594390 MtrunA17_Chr3g0096031 30.556 108 69 4 4 106 7 113 5.90e-12 57.8
Msa0594390 MtrunA17_Chr3g0105031 35.714 84 49 3 27 106 21 103 7.05e-12 57.4
Msa0594390 MtrunA17_Chr3g0101431 31.858 113 69 5 1 106 1 112 7.23e-12 57.4
Msa0594390 MtrunA17_Chr3g0104961 35.714 84 49 3 27 106 31 113 1.62e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594390 AT5G59320.1 51.190 84 41 0 24 107 22 105 1.73e-23 87.4
Msa0594390 AT5G59310.1 44.000 100 51 2 8 107 8 102 6.67e-22 83.2
Msa0594390 AT3G51590.1 42.574 101 55 1 12 109 8 108 1.78e-21 82.4
Msa0594390 AT3G51600.1 47.959 98 48 3 12 107 12 108 3.83e-19 76.6
Msa0594390 AT2G38540.1 46.226 106 53 4 4 107 5 108 7.02e-19 75.9
Msa0594390 AT4G33355.2 47.436 78 41 0 26 103 28 105 1.80e-18 74.7
Msa0594390 AT4G33355.1 47.436 78 41 0 26 103 28 105 1.98e-18 74.7
Msa0594390 AT2G38530.1 45.361 97 52 1 12 107 12 108 6.35e-18 73.6
Msa0594390 AT5G01870.1 42.000 100 52 4 13 107 8 106 9.42e-18 72.8
Msa0594390 AT2G15050.3 40.385 104 56 4 12 109 11 114 1.80e-17 72.4
Msa0594390 AT2G15050.1 40.385 104 56 4 12 109 11 114 2.42e-17 72.0
Msa0594390 AT2G15050.2 38.235 102 59 3 12 109 11 112 4.01e-17 71.2
Msa0594390 AT2G18370.1 37.647 85 51 2 23 106 22 105 2.76e-14 63.9
Msa0594390 AT3G08770.1 40.230 87 48 3 24 107 18 103 6.38e-14 63.2
Msa0594390 AT3G08770.2 40.230 87 48 3 24 107 18 103 7.00e-14 63.2

Find 44 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCAACAACTATAAATAT+AGG 0.321379 4_2:+22139740 None:intergenic
GCAGTTGCAAGCAGTCTTGC+GGG 0.361401 4_2:+22141000 None:intergenic
GCACTATAGCTGTAGAATAA+AGG 0.369849 4_2:-22139940 Msa0594390:three_prime_UTR
CTTGCGGGCGGGGCCGTTGT+TGG 0.370391 4_2:+22141015 None:intergenic
TGCAAGCAGTCTTGCGGGCG+GGG 0.373033 4_2:+22141005 None:intergenic
CCATGCATTACTTATCTTCA+AGG 0.382464 4_2:-22141094 Msa0594390:CDS
TACATGTGCAACAACCAAAC+TGG 0.389230 4_2:+22139828 None:intergenic
GAGCAACAACTATAAATATA+GGG 0.399826 4_2:+22139741 None:intergenic
TTGCAAGCAGTCTTGCGGGC+GGG 0.409587 4_2:+22141004 None:intergenic
ACTTATCTTCAAGGTGGTGC+TGG 0.410647 4_2:-22141085 Msa0594390:CDS
GTGACTGCTGCCTCTGCCAT+TGG 0.435322 4_2:+22141145 None:intergenic
GATAAGTAATGCATGGAGTA+AGG 0.447792 4_2:+22141101 None:intergenic
AACTGCTTGAAAAGTGCTGC+TGG 0.487551 4_2:-22140983 Msa0594390:CDS
ATGTTAACACCACATTTGCC+AGG 0.490963 4_2:+22140920 None:intergenic
GCTGCTCTCCCTGGCAAATG+TGG 0.495611 4_2:-22140929 Msa0594390:CDS
AGCAGTTGCAAGCAGTCTTG+CGG 0.506600 4_2:+22140999 None:intergenic
GTTGTTATTCAAACGAGCAA+TGG 0.508618 4_2:+22140958 None:intergenic
AACCAAGCTGCTGCTCTCCC+TGG 0.514408 4_2:-22140938 Msa0594390:CDS
GGTGGAGTGAGGAGACTTAA+CGG 0.519956 4_2:-22141043 Msa0594390:CDS
TGCCAGGGAGAGCAGCAGCT+TGG 0.525683 4_2:+22140936 None:intergenic
CAAGAGGAAACTCGCAGAAG+TGG 0.528500 4_2:+22139901 None:intergenic
TACAATTGTTAAATGTAGCA+TGG 0.533974 4_2:+22139779 None:intergenic
AGAGAAAGAAGAAGATAGCA+TGG 0.537528 4_2:-22139989 Msa0594390:three_prime_UTR
ACAACCAAACTGGAAAGAAA+AGG 0.538385 4_2:+22139838 None:intergenic
GGTCCATCTGCAGCATGCTG+TGG 0.539612 4_2:-22141064 Msa0594390:CDS
GGCTGCAATTATGTGCATGA+TGG 0.539847 4_2:-22141179 Msa0594390:CDS
GTTGCAAGCAGTCTTGCGGG+CGG 0.541246 4_2:+22141003 None:intergenic
TTATTCTACAGCTATAGTGC+TGG 0.541332 4_2:+22139943 None:intergenic
CCATCTGCAGCATGCTGTGG+TGG 0.550747 4_2:-22141061 Msa0594390:CDS
GTAGAAGTGCTAAACTTGTA+GGG 0.551668 4_2:+22140896 None:intergenic
GTCACATGTGGACAAGTAGT+AGG 0.553840 4_2:-22141127 Msa0594390:CDS
GAATAAAGGAAGAGCAATGA+GGG 0.557023 4_2:-22139926 Msa0594390:three_prime_UTR
GGTTAGTGCACCAATGGCAG+AGG 0.566893 4_2:-22141155 Msa0594390:CDS
CCACCACAGCATGCTGCAGA+TGG 0.580113 4_2:+22141061 None:intergenic
TGCAATTATGTGCATGATGG+TGG 0.600070 4_2:-22141176 Msa0594390:CDS
CCTTGAAGATAAGTAATGCA+TGG 0.607580 4_2:+22141094 None:intergenic
AATTATAAGTCTGAAACAAG+AGG 0.611485 4_2:+22139885 None:intergenic
GATGGTGGTTAGTGCACCAA+TGG 0.623706 4_2:-22141161 Msa0594390:CDS
GCAGAGGCAGCAGTCACATG+TGG 0.630368 4_2:-22141139 Msa0594390:CDS
AGAATAAAGGAAGAGCAATG+AGG 0.632653 4_2:-22139927 Msa0594390:three_prime_UTR
CTTAACGGTGCTGCCAACAA+CGG 0.636452 4_2:-22141028 Msa0594390:CDS
TGTTAACACCACATTTGCCA+GGG 0.642773 4_2:+22140921 None:intergenic
CAGCATGCTGTGGTGGAGTG+AGG 0.648040 4_2:-22141054 Msa0594390:CDS
TGCATTACTTATCTTCAAGG+TGG 0.657751 4_2:-22141091 Msa0594390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACACAAATATATATATATA+GGG + chr4_2:22140233-22140252 None:intergenic 10.0%
!! ATACACAAATATATATATAT+AGG + chr4_2:22140234-22140253 None:intergenic 10.0%
!! TACACAAATATATATATATA+GGG + chr4_2:22140233-22140252 None:intergenic 10.0%
!! ATACACAAATATATATATAT+AGG + chr4_2:22140234-22140253 None:intergenic 10.0%
!! ACAAAAAAAACTATTTACAA+TGG - chr4_2:22140393-22140412 Msa0594390:intron 15.0%
!! TTTATATGGTATAAAATAAG+TGG - chr4_2:22140603-22140622 Msa0594390:intron 15.0%
!! ACAAAAAAAACTATTTACAA+TGG - chr4_2:22140393-22140412 Msa0594390:intron 15.0%
!! TTTATATGGTATAAAATAAG+TGG - chr4_2:22140603-22140622 Msa0594390:intron 15.0%
!! ATTTCTCATATACGTAATTA+AGG + chr4_2:22140042-22140061 None:intergenic 20.0%
!! GGCATATTTAATAAGTTATT+TGG + chr4_2:22140356-22140375 None:intergenic 20.0%
!! TGAGACATTAAAATGATAAT+TGG - chr4_2:22140510-22140529 Msa0594390:intron 20.0%
!! GTATCAAAACAAAGTTTATA+TGG - chr4_2:22140589-22140608 Msa0594390:intron 20.0%
!! ATTTCTCATATACGTAATTA+AGG + chr4_2:22140042-22140061 None:intergenic 20.0%
!! GGCATATTTAATAAGTTATT+TGG + chr4_2:22140356-22140375 None:intergenic 20.0%
!! TGAGACATTAAAATGATAAT+TGG - chr4_2:22140510-22140529 Msa0594390:intron 20.0%
!! GTATCAAAACAAAGTTTATA+TGG - chr4_2:22140589-22140608 Msa0594390:intron 20.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr4_2:22140072-22140091 Msa0594390:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr4_2:22140197-22140216 Msa0594390:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr4_2:22140198-22140217 Msa0594390:intron 25.0%
! ATATGCCTAAAAAAATGAAG+TGG - chr4_2:22140369-22140388 Msa0594390:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr4_2:22140377-22140396 None:intergenic 25.0%
! GACATTAAAATGATAATTGG+AGG - chr4_2:22140513-22140532 Msa0594390:intron 25.0%
! ATTAAAATGATAATTGGAGG+AGG - chr4_2:22140516-22140535 Msa0594390:intron 25.0%
! TACACGTGTATAATTGTATT+AGG - chr4_2:22140567-22140586 Msa0594390:intron 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr4_2:22140999-22141018 None:intergenic 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr4_2:22141105-22141124 None:intergenic 25.0%
! GAGCAACAACTATAAATATA+GGG + chr4_2:22141143-22141162 None:intergenic 25.0%
! TGAGCAACAACTATAAATAT+AGG + chr4_2:22141144-22141163 None:intergenic 25.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr4_2:22140072-22140091 Msa0594390:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr4_2:22140197-22140216 Msa0594390:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr4_2:22140198-22140217 Msa0594390:intron 25.0%
! ATATGCCTAAAAAAATGAAG+TGG - chr4_2:22140369-22140388 Msa0594390:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr4_2:22140377-22140396 None:intergenic 25.0%
! GACATTAAAATGATAATTGG+AGG - chr4_2:22140513-22140532 Msa0594390:intron 25.0%
! ATTAAAATGATAATTGGAGG+AGG - chr4_2:22140516-22140535 Msa0594390:intron 25.0%
! TACACGTGTATAATTGTATT+AGG - chr4_2:22140567-22140586 Msa0594390:intron 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr4_2:22140999-22141018 None:intergenic 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr4_2:22141105-22141124 None:intergenic 25.0%
! GAGCAACAACTATAAATATA+GGG + chr4_2:22141143-22141162 None:intergenic 25.0%
! TGAGCAACAACTATAAATAT+AGG + chr4_2:22141144-22141163 None:intergenic 25.0%
!! TACCTGAAGAAGTTTTATGT+AGG - chr4_2:22140301-22140320 Msa0594390:intron 30.0%
! GTCTCACAATCACTTAATTT+TGG + chr4_2:22140496-22140515 None:intergenic 30.0%
! TATGAGTGACTTTGCATTTT+TGG - chr4_2:22140634-22140653 Msa0594390:intron 30.0%
! ATGAGTGACTTTGCATTTTT+GGG - chr4_2:22140635-22140654 Msa0594390:intron 30.0%
ACTATCTATATGCTCATGAA+GGG + chr4_2:22140767-22140786 None:intergenic 30.0%
! TTTTCCTTTTCTTTCCAGTT+TGG - chr4_2:22141039-22141058 Msa0594390:CDS 30.0%
!! TACCTGAAGAAGTTTTATGT+AGG - chr4_2:22140301-22140320 Msa0594390:intron 30.0%
! GTCTCACAATCACTTAATTT+TGG + chr4_2:22140496-22140515 None:intergenic 30.0%
! TATGAGTGACTTTGCATTTT+TGG - chr4_2:22140634-22140653 Msa0594390:intron 30.0%
! ATGAGTGACTTTGCATTTTT+GGG - chr4_2:22140635-22140654 Msa0594390:intron 30.0%
ACTATCTATATGCTCATGAA+GGG + chr4_2:22140767-22140786 None:intergenic 30.0%
! TTTTCCTTTTCTTTCCAGTT+TGG - chr4_2:22141039-22141058 Msa0594390:CDS 30.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr4_2:22139681-22139700 Msa0594390:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr4_2:22139783-22139802 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_2:22139790-22139809 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_2:22139787-22139806 Msa0594390:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr4_2:22139790-22139809 Msa0594390:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_2:22139926-22139945 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr4_2:22139988-22140007 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr4_2:22139989-22140008 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr4_2:22139998-22140017 Msa0594390:three_prime_UTR 35.0%
CTCCTACATAAAACTTCTTC+AGG + chr4_2:22140306-22140325 None:intergenic 35.0%
!! CTGAAGAAGTTTTATGTAGG+AGG - chr4_2:22140304-22140323 Msa0594390:intron 35.0%
!! TTGGTCATCATCTTTTAGCT+TGG + chr4_2:22140477-22140496 None:intergenic 35.0%
!! TTTTTGGGCAGTCATCAAAA+TGG - chr4_2:22140650-22140669 Msa0594390:intron 35.0%
CACTATCTATATGCTCATGA+AGG + chr4_2:22140768-22140787 None:intergenic 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr4_2:22140892-22140911 Msa0594390:intron 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr4_2:22140941-22140960 None:intergenic 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr4_2:22140941-22140960 Msa0594390:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr4_2:22140954-22140973 Msa0594390:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr4_2:22140955-22140974 Msa0594390:CDS 35.0%
ACAACCAAACTGGAAAGAAA+AGG + chr4_2:22141046-22141065 None:intergenic 35.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr4_2:22139681-22139700 Msa0594390:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr4_2:22139783-22139802 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr4_2:22139790-22139809 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr4_2:22139787-22139806 Msa0594390:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr4_2:22139790-22139809 Msa0594390:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr4_2:22139926-22139945 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr4_2:22139988-22140007 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr4_2:22139989-22140008 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr4_2:22139998-22140017 Msa0594390:three_prime_UTR 35.0%
CTCCTACATAAAACTTCTTC+AGG + chr4_2:22140306-22140325 None:intergenic 35.0%
!! CTGAAGAAGTTTTATGTAGG+AGG - chr4_2:22140304-22140323 Msa0594390:intron 35.0%
!! TTGGTCATCATCTTTTAGCT+TGG + chr4_2:22140477-22140496 None:intergenic 35.0%
!! TTTTTGGGCAGTCATCAAAA+TGG - chr4_2:22140650-22140669 Msa0594390:intron 35.0%
CACTATCTATATGCTCATGA+AGG + chr4_2:22140768-22140787 None:intergenic 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr4_2:22140892-22140911 Msa0594390:intron 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr4_2:22140941-22140960 None:intergenic 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr4_2:22140941-22140960 Msa0594390:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr4_2:22140954-22140973 Msa0594390:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr4_2:22140955-22140974 Msa0594390:CDS 35.0%
ACAACCAAACTGGAAAGAAA+AGG + chr4_2:22141046-22141065 None:intergenic 35.0%
TGCAATTATGTGCATGATGG+TGG - chr4_2:22139705-22139724 Msa0594390:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr4_2:22139963-22139982 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr4_2:22139964-22139983 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr4_2:22140086-22140105 Msa0594390:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr4_2:22140215-22140234 None:intergenic 40.0%
!!! GTCATCATCTTTTAGCTTGG+AGG + chr4_2:22140474-22140493 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr4_2:22140847-22140866 Msa0594390:intron 40.0%
TACATGTGCAACAACCAAAC+TGG + chr4_2:22141056-22141075 None:intergenic 40.0%
TGCAATTATGTGCATGATGG+TGG - chr4_2:22139705-22139724 Msa0594390:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr4_2:22139963-22139982 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr4_2:22139964-22139983 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr4_2:22140086-22140105 Msa0594390:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr4_2:22140215-22140234 None:intergenic 40.0%
!!! GTCATCATCTTTTAGCTTGG+AGG + chr4_2:22140474-22140493 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr4_2:22140847-22140866 Msa0594390:intron 40.0%
TACATGTGCAACAACCAAAC+TGG + chr4_2:22141056-22141075 None:intergenic 40.0%
GGCTGCAATTATGTGCATGA+TGG - chr4_2:22139702-22139721 Msa0594390:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr4_2:22139754-22139773 Msa0594390:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr4_2:22139796-22139815 Msa0594390:three_prime_UTR 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_2:22139898-22139917 Msa0594390:three_prime_UTR 45.0%
GGCTGCAATTATGTGCATGA+TGG - chr4_2:22139702-22139721 Msa0594390:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr4_2:22139754-22139773 Msa0594390:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr4_2:22139796-22139815 Msa0594390:three_prime_UTR 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr4_2:22139898-22139917 Msa0594390:three_prime_UTR 45.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr4_2:22141195-22141214 Msa0594390:CDS 5.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr4_2:22141195-22141214 Msa0594390:CDS 5.0%
! GATGGTGGTTAGTGCACCAA+TGG - chr4_2:22139720-22139739 Msa0594390:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr4_2:22139838-22139857 Msa0594390:three_prime_UTR 50.0%
!! CTTAACGGTGCTGCCAACAA+CGG - chr4_2:22139853-22139872 Msa0594390:three_prime_UTR 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr4_2:22139885-22139904 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr4_2:22140983-22141002 None:intergenic 50.0%
! GATGGTGGTTAGTGCACCAA+TGG - chr4_2:22139720-22139739 Msa0594390:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr4_2:22139838-22139857 Msa0594390:three_prime_UTR 50.0%
!! CTTAACGGTGCTGCCAACAA+CGG - chr4_2:22139853-22139872 Msa0594390:three_prime_UTR 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr4_2:22139885-22139904 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr4_2:22140983-22141002 None:intergenic 50.0%
GGTTAGTGCACCAATGGCAG+AGG - chr4_2:22139726-22139745 Msa0594390:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr4_2:22139884-22139903 None:intergenic 55.0%
GGTTAGTGCACCAATGGCAG+AGG - chr4_2:22139726-22139745 Msa0594390:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr4_2:22139884-22139903 None:intergenic 55.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr4_2:22139739-22139758 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr4_2:22139742-22139761 Msa0594390:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr4_2:22139817-22139836 Msa0594390:three_prime_UTR 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr4_2:22139823-22139842 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr4_2:22139820-22139839 Msa0594390:three_prime_UTR 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr4_2:22139827-22139846 Msa0594390:three_prime_UTR 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr4_2:22139880-22139899 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr4_2:22139881-22139900 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_2:22139943-22139962 Msa0594390:three_prime_UTR 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_2:22139952-22139971 Msa0594390:three_prime_UTR 60.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr4_2:22139739-22139758 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr4_2:22139742-22139761 Msa0594390:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr4_2:22139817-22139836 Msa0594390:three_prime_UTR 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr4_2:22139823-22139842 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr4_2:22139820-22139839 Msa0594390:three_prime_UTR 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr4_2:22139827-22139846 Msa0594390:three_prime_UTR 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr4_2:22139880-22139899 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr4_2:22139881-22139900 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr4_2:22139943-22139962 Msa0594390:three_prime_UTR 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr4_2:22139952-22139971 Msa0594390:three_prime_UTR 60.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr4_2:22139879-22139898 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_2:22139948-22139967 None:intergenic 65.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr4_2:22139879-22139898 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr4_2:22139948-22139967 None:intergenic 65.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr4_2:22139869-22139888 None:intergenic 75.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr4_2:22139869-22139888 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 22139676 22141227 22139676 ID=Msa0594390;Name=Msa0594390
chr4_2 mRNA 22139676 22141227 22139676 ID=Msa0594390-mRNA-1;Parent=Msa0594390;Name=Msa0594390-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0.5|1|1|1|2|352|109
chr4_2 exon 22139676 22140040 22139676 ID=Msa0594390-mRNA-1:exon:6041;Parent=Msa0594390-mRNA-1
chr4_2 exon 22140911 22141227 22140911 ID=Msa0594390-mRNA-1:exon:6040;Parent=Msa0594390-mRNA-1
chr4_2 CDS 22140911 22141227 22140911 ID=Msa0594390-mRNA-1:cds;Parent=Msa0594390-mRNA-1
chr4_2 CDS 22140028 22140040 22140028 ID=Msa0594390-mRNA-1:cds;Parent=Msa0594390-mRNA-1
chr4_2 three_prime_UTR 22139676 22140027 22139676 ID=Msa0594390-mRNA-1:three_prime_utr;Parent=Msa0594390-mRNA-1
Gene Sequence

>Msa0594390

ATGGCAAGCATGAGAGTTGCATTTTTGGCTGCAATTATGTGCATGATGGTGGTTAGTGCACCAATGGCAGAGGCAGCAGTCACATGTGGACAAGTAGTAGGTTTCCTTACTCCATGCATTACTTATCTTCAAGGTGGTGCTGGTCCATCTGCAGCATGCTGTGGTGGAGTGAGGAGACTTAACGGTGCTGCCAACAACGGCCCCGCCCGCAAGACTGCTTGCAACTGCTTGAAAAGTGCTGCTGGTTCCATTGCTCGTTTGAATAACAACCAAGCTGCTGCTCTCCCTGGCAAATGTGGTGTTAACATTCCCTACAACATCAGGTTCTAA

Protein sequence

>Msa0594390

MASMRVAFLAAIMCMMVVSAPMAEAAVTCGQVVGFLTPCITYLQGGAGPSAACCGGVRRLNGAANNGPARKTACNCLKSAAGSIARLNNNQAAALPGKCGVNIPYNIRF*