AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0972730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0972730 MtrunA17_Chr6g0451471 93.919 148 8 1 31 177 31 178 1.12e-78 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0972730 AT5G14910.1 48.087 183 84 5 1 181 1 174 1.06e-45 149
Msa0972730 AT5G14910.2 48.087 183 84 5 1 181 1 174 1.06e-45 149

Find 51 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTTACTATGCTCTTTC+AGG 0.182649 6_4:+5013663 Msa0972730:CDS
GGTTTGTATAGGCCTGATTA+AGG 0.254929 6_4:+5017087 Msa0972730:three_prime_UTR
ACCTTTGACCAAAGCTTTAG+AGG 0.283689 6_4:+5015317 Msa0972730:CDS
CATCTGCAAGATGTGAAAAT+TGG 0.303248 6_4:-5017260 None:intergenic
AGAGTATCTGAAGGTGAAAT+TGG 0.316123 6_4:-5013646 None:intergenic
TGTTTCATCTTCAACTGCTT+TGG 0.340905 6_4:-5013539 None:intergenic
AAAACTGTGGCAATTGGTTT+TGG 0.354814 6_4:-5013337 None:intergenic
TTTGAAGCCTAAACCTTGTA+TGG 0.362693 6_4:-5016914 None:intergenic
TGAGGGACTCGCAACTTTAG+AGG 0.364918 6_4:+5015943 Msa0972730:CDS
TAGAGCTACCTCTAAAGCTT+TGG 0.398332 6_4:-5015325 None:intergenic
GCACTCACTTTGGTTTGTAT+AGG 0.403708 6_4:+5017076 Msa0972730:three_prime_UTR
GTTAATCCATACCCTTAATC+AGG 0.407079 6_4:-5017099 None:intergenic
TTTGAAGGTTAATGTATTTG+AGG 0.412702 6_4:+5015925 Msa0972730:CDS
TATAGGCCTGATTAAGGGTA+TGG 0.414870 6_4:+5017093 Msa0972730:three_prime_UTR
TTGAAGGTTAATGTATTTGA+GGG 0.430100 6_4:+5015926 Msa0972730:CDS
TACAGGAGTGGCTTCAAGTC+TGG 0.431417 6_4:+5016885 Msa0972730:CDS
TGGCATGGAAAAGTGCAAAA+TGG 0.432189 6_4:-5013463 None:intergenic
GTAGAAACCATACAAGGTTT+AGG 0.441670 6_4:+5016907 Msa0972730:CDS
GTTTGTATAGGCCTGATTAA+GGG 0.451992 6_4:+5017088 Msa0972730:three_prime_UTR
GGTGAAATTGGAACAACAAC+AGG 0.459766 6_4:-5013634 None:intergenic
GAGTGCAGTAGGCTTTAATC+AGG 0.460053 6_4:-5017059 None:intergenic
TGTTGATAAAACTTTGGATA+GGG 0.460152 6_4:+5013281 Msa0972730:five_prime_UTR
TTGTTGATAAAACTTTGGAT+AGG 0.469686 6_4:+5013280 Msa0972730:five_prime_UTR
GAAGAAGTAGAAGATGAAGA+AGG 0.473631 6_4:-5013430 None:intergenic
AAAGCCTACTGCACTCACTT+TGG 0.486440 6_4:+5017066 Msa0972730:three_prime_UTR
GCCTTCATGCGAGGGTGGCA+TGG 0.496030 6_4:-5013478 None:intergenic
TTGAAGCCACTCCTGTAGCT+TGG 0.502377 6_4:-5016879 None:intergenic
ACCTCTAAAGCTTTGGTCAA+AGG 0.511214 6_4:-5015318 None:intergenic
AAGAAGTAGAAGATGAAGAA+GGG 0.513038 6_4:-5013429 None:intergenic
CAGACAACTATCCAAGCTAC+AGG 0.530261 6_4:+5016868 Msa0972730:CDS
TTTCAATGTTTGAAGGCAGA+GGG 0.537717 6_4:+5015270 Msa0972730:intron
CAAACCAAAGTGAGTGCAGT+AGG 0.548146 6_4:-5017070 None:intergenic
TCCATGCCACCCTCGCATGA+AGG 0.568679 6_4:+5013477 Msa0972730:CDS
TTATAGTTCTCAATAAGTGA+AGG 0.581752 6_4:-5017211 None:intergenic
TGCAAGATGTGAAAATTGGC+TGG 0.581886 6_4:-5017256 None:intergenic
ATTGAGAGTGCCTTCATGCG+AGG 0.584233 6_4:-5013487 None:intergenic
GTTGCCTAGACTAAATCTGC+TGG 0.591318 6_4:+5016982 Msa0972730:exon
TACACCAGCAGATTTAGTCT+AGG 0.594029 6_4:-5016986 None:intergenic
TGAGAACTATAAGACACCAT+TGG 0.594418 6_4:+5017222 Msa0972730:three_prime_UTR
TTGAGAGTGCCTTCATGCGA+GGG 0.594438 6_4:-5013486 None:intergenic
TCTAAAGCTTTGGTCAAAGG+TGG 0.599903 6_4:-5015315 None:intergenic
GCAACAAACATCAGTAACTT+CGG 0.600332 6_4:+5013603 Msa0972730:CDS
AGTCTGGTAGAAACCATACA+AGG 0.620327 6_4:+5016901 Msa0972730:CDS
AGCATAGTAAGAGTATCTGA+AGG 0.624094 6_4:-5013655 None:intergenic
CTTTGGTCACAAATAAACAA+CGG 0.624612 6_4:-5013522 None:intergenic
AGAGTGCCTTCATGCGAGGG+TGG 0.634966 6_4:-5013483 None:intergenic
ACAAGAACAAGTTGTTACTG+AGG 0.645235 6_4:+5013570 Msa0972730:CDS
AACTATCCAAGCTACAGGAG+TGG 0.646935 6_4:+5016873 Msa0972730:CDS
GCTGGTTGCTATAATGCCAA+TGG 0.649994 6_4:-5017238 None:intergenic
AGATGAAGATGAAAGTAGTG+TGG 0.655193 6_4:-5013374 None:intergenic
GAAATTGGAACAACAACAGG+TGG 0.670670 6_4:-5013631 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCAAATTTTTTTCATAT+GGG - chr6_4:5013822-5013841 None:intergenic 10.0%
!!! AAAATCAAATTTTTTTCATA+TGG - chr6_4:5013823-5013842 None:intergenic 10.0%
!! ATTCTGAATTATAAAAAATT+CGG - chr6_4:5015498-5015517 None:intergenic 10.0%
!! AAAATAAAAATTATATGTCA+TGG - chr6_4:5015881-5015900 None:intergenic 10.0%
!!! ACATATAATTTTTATTTTGT+AGG + chr6_4:5015883-5015902 Msa0972730:intron 10.0%
!!! TGCTTAATTTTAAAAATAAA+GGG - chr6_4:5016200-5016219 None:intergenic 10.0%
!!! TTGCTTAATTTTAAAAATAA+AGG - chr6_4:5016201-5016220 None:intergenic 10.0%
!!! TTTTTTTGTTGATAAAACTT+TGG + chr6_4:5013275-5013294 Msa0972730:five_prime_UTR 15.0%
!! AGTAATAAAATGCATATTTA+AGG + chr6_4:5014465-5014484 Msa0972730:intron 15.0%
!! GTAATAAAATGCATATTTAA+GGG + chr6_4:5014466-5014485 Msa0972730:intron 15.0%
!!! ATTTTGTTCTGATTTTTTTA+TGG + chr6_4:5015420-5015439 Msa0972730:intron 15.0%
!! CGATTCTTATTATAATTTAA+AGG + chr6_4:5015560-5015579 Msa0972730:intron 15.0%
!! TTAAAAAATTAGCAGAAATT+TGG + chr6_4:5016321-5016340 Msa0972730:intron 15.0%
!!! AAAATCACAAATTTTCACAT+TGG - chr6_4:5013791-5013810 None:intergenic 20.0%
!! ATCAAACAAAGAACAAAAAT+TGG - chr6_4:5013862-5013881 None:intergenic 20.0%
!!! AGTTTTTTTTCTCTTGAAAT+TGG + chr6_4:5013899-5013918 Msa0972730:intron 20.0%
!!! GTTTTTTTTCTCTTGAAATT+GGG + chr6_4:5013900-5013919 Msa0972730:intron 20.0%
!!! TTTTTTTTCTCTTGAAATTG+GGG + chr6_4:5013901-5013920 Msa0972730:intron 20.0%
!!! TCATTTTCTGAAAATATTAC+CGG - chr6_4:5014153-5014172 None:intergenic 20.0%
!! TTTATTACTCAAATTATCCT+GGG - chr6_4:5014454-5014473 None:intergenic 20.0%
!!! TTTTATTACTCAAATTATCC+TGG - chr6_4:5014455-5014474 None:intergenic 20.0%
!! ATCTTAAAAGTTGTATTGTA+GGG + chr6_4:5014827-5014846 Msa0972730:intron 20.0%
!!! GTTAAGGTTTTATAAATTGA+AGG + chr6_4:5015711-5015730 Msa0972730:intron 20.0%
!! TGATTATTTCAATCACATTA+CGG - chr6_4:5016079-5016098 None:intergenic 20.0%
!! AAGAATGATTCTTAATAACT+AGG + chr6_4:5016098-5016117 Msa0972730:intron 20.0%
!!! ATTAGAAGAAAATTGATAGT+AGG - chr6_4:5016231-5016250 None:intergenic 20.0%
!! GTTTGAATCAATTAAATCAT+TGG - chr6_4:5016469-5016488 None:intergenic 20.0%
!!! AAACTATGAATATTTTGAGT+GGG + chr6_4:5016485-5016504 Msa0972730:intron 20.0%
!!! ATTAGGATTAATTGTACTTT+TGG - chr6_4:5016632-5016651 None:intergenic 20.0%
!!! TCTTTTACAAGATAGTTATT+AGG - chr6_4:5016649-5016668 None:intergenic 20.0%
!!! GTTAAGCTTTTTATTATACA+AGG + chr6_4:5016734-5016753 Msa0972730:intron 20.0%
!!! AACTTCTTTTTTGTATTAGT+AGG + chr6_4:5017119-5017138 Msa0972730:three_prime_UTR 20.0%
!!! ACTTCTTTTTTGTATTAGTA+GGG + chr6_4:5017120-5017139 Msa0972730:three_prime_UTR 20.0%
!! TTGTTGATAAAACTTTGGAT+AGG + chr6_4:5013280-5013299 Msa0972730:five_prime_UTR 25.0%
!! TGTTGATAAAACTTTGGATA+GGG + chr6_4:5013281-5013300 Msa0972730:five_prime_UTR 25.0%
!!! CATTTTTGATTGAAAAACTG+TGG - chr6_4:5013353-5013372 None:intergenic 25.0%
!!! CACAGTTTTTCAATCAAAAA+TGG + chr6_4:5013351-5013370 Msa0972730:exon 25.0%
!!! AAATCGAACTTTTTTCACAA+GGG - chr6_4:5013729-5013748 None:intergenic 25.0%
!!! AAAATCGAACTTTTTTCACA+AGG - chr6_4:5013730-5013749 None:intergenic 25.0%
!!! AAAAACCAACTTTTTCACAT+GGG - chr6_4:5013761-5013780 None:intergenic 25.0%
!!! AAAAAACCAACTTTTTCACA+TGG - chr6_4:5013762-5013781 None:intergenic 25.0%
!!! GATGATTTTAAGATTGATGA+AGG + chr6_4:5014026-5014045 Msa0972730:intron 25.0%
!! TTTAAGATTGATGAAGGTTA+TGG + chr6_4:5014032-5014051 Msa0972730:intron 25.0%
!! TATAAATGGACATTCTTTTG+AGG + chr6_4:5014683-5014702 Msa0972730:intron 25.0%
!! CATGGAAATTTGTTTATAAG+TGG + chr6_4:5014788-5014807 Msa0972730:intron 25.0%
!! AAATTTGTTTATAAGTGGAG+TGG + chr6_4:5014793-5014812 Msa0972730:intron 25.0%
!!! AATACAACTTTTAAGATGAG+GGG - chr6_4:5014824-5014843 None:intergenic 25.0%
!!! CAATACAACTTTTAAGATGA+GGG - chr6_4:5014825-5014844 None:intergenic 25.0%
!!! ACAATACAACTTTTAAGATG+AGG - chr6_4:5014826-5014845 None:intergenic 25.0%
! CATCTTAAAAGTTGTATTGT+AGG + chr6_4:5014826-5014845 Msa0972730:intron 25.0%
! TATGGAGAATCTAAGAATTT+GGG - chr6_4:5015074-5015093 None:intergenic 25.0%
! ATTTAAGTGATTCAAGTGTA+TGG - chr6_4:5015092-5015111 None:intergenic 25.0%
!! AGTCTATTTTCAATGTTTGA+AGG + chr6_4:5015263-5015282 Msa0972730:intron 25.0%
!!! TTCTGATTTTTTTATGGACA+TGG + chr6_4:5015426-5015445 Msa0972730:intron 25.0%
! ATGTGTGTTTGTGATAATAT+AGG + chr6_4:5015682-5015701 Msa0972730:intron 25.0%
!! AATTCCGTGAAATAATTTGT+TGG + chr6_4:5015750-5015769 Msa0972730:intron 25.0%
! ATGACCAACAAATTATTTCA+CGG - chr6_4:5015757-5015776 None:intergenic 25.0%
!!! CTTCTTTTGTTGTTCTTTTT+TGG + chr6_4:5015789-5015808 Msa0972730:intron 25.0%
!!! GTTCTTTTTTGGTTTGTTAT+TGG + chr6_4:5015800-5015819 Msa0972730:intron 25.0%
! TTTGAAGGTTAATGTATTTG+AGG + chr6_4:5015925-5015944 Msa0972730:CDS 25.0%
! TTGAAGGTTAATGTATTTGA+GGG + chr6_4:5015926-5015945 Msa0972730:CDS 25.0%
!!! AGAGTTTGATTTTCATCATA+TGG - chr6_4:5016000-5016019 None:intergenic 25.0%
!! ATTTGGACTACATACAATTT+TGG + chr6_4:5016146-5016165 Msa0972730:intron 25.0%
! GATTAAGAAAATGAGAATTG+AGG - chr6_4:5016259-5016278 None:intergenic 25.0%
! ATCACAAACTCTCAATTATT+TGG - chr6_4:5016281-5016300 None:intergenic 25.0%
! AGAAATTTGGTATGATTTGA+AGG + chr6_4:5016334-5016353 Msa0972730:intron 25.0%
!!! TTGAGTGATTTTTTATGCTT+TGG + chr6_4:5016417-5016436 Msa0972730:intron 25.0%
!!! CAAACTATGAATATTTTGAG+TGG + chr6_4:5016484-5016503 Msa0972730:intron 25.0%
! TTAGCTTAAACATTATGCAA+TGG + chr6_4:5016806-5016825 Msa0972730:intron 25.0%
! TTATAGTTCTCAATAAGTGA+AGG - chr6_4:5017214-5017233 None:intergenic 25.0%
AAGAAGTAGAAGATGAAGAA+GGG - chr6_4:5013432-5013451 None:intergenic 30.0%
CTTTGGTCACAAATAAACAA+CGG - chr6_4:5013525-5013544 None:intergenic 30.0%
AAAATCCCATGTGAAAAAGT+TGG + chr6_4:5013753-5013772 Msa0972730:intron 30.0%
GGTCATTATGACATGAAATT+AGG + chr6_4:5013934-5013953 Msa0972730:intron 30.0%
ATGACATGAAATTAGGATAG+TGG + chr6_4:5013941-5013960 Msa0972730:intron 30.0%
! AAATTAGGATAGTGGTGAAA+TGG + chr6_4:5013949-5013968 Msa0972730:intron 30.0%
! AATTAGGATAGTGGTGAAAT+GGG + chr6_4:5013950-5013969 Msa0972730:intron 30.0%
TAGATATGACACTTACACAT+AGG + chr6_4:5014125-5014144 Msa0972730:intron 30.0%
AGATATGACACTTACACATA+GGG + chr6_4:5014126-5014145 Msa0972730:intron 30.0%
TGAACTTAGACAAATCAGTT+AGG + chr6_4:5014311-5014330 Msa0972730:intron 30.0%
GAACTTAGACAAATCAGTTA+GGG + chr6_4:5014312-5014331 Msa0972730:intron 30.0%
GAGAATTATACTGTCTTAGA+AGG + chr6_4:5014360-5014379 Msa0972730:intron 30.0%
ATTAGTGAGAATAACAGTGT+AGG - chr6_4:5014619-5014638 None:intergenic 30.0%
!! GATGTGTGTAGCTTTATAAA+TGG + chr6_4:5014669-5014688 Msa0972730:intron 30.0%
GGAATAAAACACTTTCAAGA+AGG - chr6_4:5014736-5014755 None:intergenic 30.0%
TGCCATATCCTATATAATGT+GGG - chr6_4:5014770-5014789 None:intergenic 30.0%
ATGCCATATCCTATATAATG+TGG - chr6_4:5014771-5014790 None:intergenic 30.0%
ACATTATATAGGATATGGCA+TGG + chr6_4:5014770-5014789 Msa0972730:intron 30.0%
CTCATACCATCTAAGAATTT+GGG - chr6_4:5014868-5014887 None:intergenic 30.0%
TCTCATACCATCTAAGAATT+TGG - chr6_4:5014869-5014888 None:intergenic 30.0%
AAATTCTTAGATGGTATGAG+AGG + chr6_4:5014868-5014887 Msa0972730:intron 30.0%
CTGAAACTGTGTTTATAAGT+GGG + chr6_4:5015004-5015023 Msa0972730:intron 30.0%
GTATGGAGAATCTAAGAATT+TGG - chr6_4:5015075-5015094 None:intergenic 30.0%
ACCTTAAAATTGCATGCTTA+AGG + chr6_4:5015122-5015141 Msa0972730:intron 30.0%
CCTTAAAATTGCATGCTTAA+GGG + chr6_4:5015123-5015142 Msa0972730:intron 30.0%
ATTTGCACATTGTAAAGTCT+AGG - chr6_4:5015213-5015232 None:intergenic 30.0%
ACATTGAAGTAAGTGAACAA+GGG - chr6_4:5015374-5015393 None:intergenic 30.0%
AACATTGAAGTAAGTGAACA+AGG - chr6_4:5015375-5015394 None:intergenic 30.0%
TAGCATCATCACTGAATTAA+AGG - chr6_4:5015459-5015478 None:intergenic 30.0%
! TTTAATTCAGTGATGATGCT+AGG + chr6_4:5015458-5015477 Msa0972730:intron 30.0%
! TTAATTCAGTGATGATGCTA+GGG + chr6_4:5015459-5015478 Msa0972730:intron 30.0%
TTCTGTCTTATATAATCCTG+AGG + chr6_4:5015613-5015632 Msa0972730:intron 30.0%
! TAAAACAGCTATTGTTGTTG+TGG - chr6_4:5015655-5015674 None:intergenic 30.0%
! ATAATATAGGCACTGTGTTA+AGG + chr6_4:5015695-5015714 Msa0972730:intron 30.0%
! TTGATAATAGGCAAGTGTTA+GGG - chr6_4:5015854-5015873 None:intergenic 30.0%
! ATTGATAATAGGCAAGTGTT+AGG - chr6_4:5015855-5015874 None:intergenic 30.0%
!!! TTTTATTTTGTAGGAGACAG+AGG + chr6_4:5015892-5015911 Msa0972730:intron 30.0%
!!! TTTATTTTGTAGGAGACAGA+GGG + chr6_4:5015893-5015912 Msa0972730:intron 30.0%
!! AGAGGGTGTTAAAAATTTGA+AGG + chr6_4:5015910-5015929 Msa0972730:CDS 30.0%
AAATCAAACTCTTAAGCCAT+TGG + chr6_4:5016008-5016027 Msa0972730:intron 30.0%
AAACAATCATCGAAAACCAA+TGG - chr6_4:5016027-5016046 None:intergenic 30.0%
! GTTTTCGATGATTGTTTACA+AGG + chr6_4:5016030-5016049 Msa0972730:intron 30.0%
! CTTTTCTTATCCCACAAATT+TGG + chr6_4:5016129-5016148 Msa0972730:intron 30.0%
TGTATGTAGTCCAAATTTGT+GGG - chr6_4:5016142-5016161 None:intergenic 30.0%
TTGTATGTAGTCCAAATTTG+TGG - chr6_4:5016143-5016162 None:intergenic 30.0%
! TTTTTGTAGAATGTGAGACT+AGG + chr6_4:5016358-5016377 Msa0972730:intron 30.0%
! TTTTGTAGAATGTGAGACTA+GGG + chr6_4:5016359-5016378 Msa0972730:intron 30.0%
AAGATAGAAGTCTTGAGATT+TGG + chr6_4:5016386-5016405 Msa0972730:intron 30.0%
!!! TTTGGTTGATGAGTTTTGAA+TGG + chr6_4:5016435-5016454 Msa0972730:intron 30.0%
TTAAGCGAGAAAAAAGTGAT+CGG + chr6_4:5016527-5016546 Msa0972730:intron 30.0%
ACTAACGGTAACAATAAAGT+TGG + chr6_4:5016553-5016572 Msa0972730:intron 30.0%
TTGTGCTTATTATGTTCAGT+TGG + chr6_4:5016840-5016859 Msa0972730:intron 30.0%
!! AAAACTGTGGCAATTGGTTT+TGG - chr6_4:5013340-5013359 None:intergenic 35.0%
GATTGAAAAACTGTGGCAAT+TGG - chr6_4:5013346-5013365 None:intergenic 35.0%
AGATGAAGATGAAAGTAGTG+TGG - chr6_4:5013377-5013396 None:intergenic 35.0%
GAAGAAGTAGAAGATGAAGA+AGG - chr6_4:5013433-5013452 None:intergenic 35.0%
TGTTTCATCTTCAACTGCTT+TGG - chr6_4:5013542-5013561 None:intergenic 35.0%
ACAAGAACAAGTTGTTACTG+AGG + chr6_4:5013570-5013589 Msa0972730:CDS 35.0%
GCAACAAACATCAGTAACTT+CGG + chr6_4:5013603-5013622 Msa0972730:CDS 35.0%
! AGAGTATCTGAAGGTGAAAT+TGG - chr6_4:5013649-5013668 None:intergenic 35.0%
!! AGCATAGTAAGAGTATCTGA+AGG - chr6_4:5013658-5013677 None:intergenic 35.0%
TACTCTTACTATGCTCTTTC+AGG + chr6_4:5013663-5013682 Msa0972730:CDS 35.0%
TGAAATTGGGGCTACTAAAT+TGG + chr6_4:5013913-5013932 Msa0972730:intron 35.0%
ACTTAGAGTAAATAATGCCC+AGG + chr6_4:5014434-5014453 Msa0972730:intron 35.0%
CAACCTACTCTATATCCTTT+AGG + chr6_4:5014525-5014544 Msa0972730:intron 35.0%
ACTCTCAATTATGTGCCTAA+AGG - chr6_4:5014543-5014562 None:intergenic 35.0%
TCCTACTATCATGAGTCTAT+GGG + chr6_4:5014587-5014606 Msa0972730:intron 35.0%
AAAGCTACACACATCTACAT+TGG - chr6_4:5014664-5014683 None:intergenic 35.0%
CTTTCAAGAAGGATACTAGT+GGG - chr6_4:5014725-5014744 None:intergenic 35.0%
ACTTTCAAGAAGGATACTAG+TGG - chr6_4:5014726-5014745 None:intergenic 35.0%
GTCCCACATTATATAGGATA+TGG + chr6_4:5014765-5014784 Msa0972730:intron 35.0%
TTTGTTTATAAGTGGAGTGG+AGG + chr6_4:5014796-5014815 Msa0972730:intron 35.0%
AGAGGTTATTCAAGATTCGT+TGG + chr6_4:5014886-5014905 Msa0972730:intron 35.0%
GAGGTTATTCAAGATTCGTT+GGG + chr6_4:5014887-5014906 Msa0972730:intron 35.0%
GCTGAAACTGTGTTTATAAG+TGG + chr6_4:5015003-5015022 Msa0972730:intron 35.0%
AAACTGTGTTTATAAGTGGG+AGG + chr6_4:5015007-5015026 Msa0972730:intron 35.0%
! CCCTTAAGCATGCAATTTTA+AGG - chr6_4:5015126-5015145 None:intergenic 35.0%
! TTTTCAATGTTTGAAGGCAG+AGG + chr6_4:5015269-5015288 Msa0972730:intron 35.0%
TTTCAATGTTTGAAGGCAGA+GGG + chr6_4:5015270-5015289 Msa0972730:intron 35.0%
CATTGAAGTAAGTGAACAAG+GGG - chr6_4:5015373-5015392 None:intergenic 35.0%
AGAATCAGTCGTATACATCT+TGG + chr6_4:5015513-5015532 Msa0972730:intron 35.0%
TGGTATATTTGAAGATCGTG+TGG + chr6_4:5015820-5015839 Msa0972730:intron 35.0%
!! TGTCATGGAGCATTGATAAT+AGG - chr6_4:5015866-5015885 None:intergenic 35.0%
GTAGAAACCATACAAGGTTT+AGG + chr6_4:5016907-5016926 Msa0972730:CDS 35.0%
! TTTGAAGCCTAAACCTTGTA+TGG - chr6_4:5016917-5016936 None:intergenic 35.0%
GTTTGTATAGGCCTGATTAA+GGG + chr6_4:5017088-5017107 Msa0972730:three_prime_UTR 35.0%
GTTAATCCATACCCTTAATC+AGG - chr6_4:5017102-5017121 None:intergenic 35.0%
TGAGAACTATAAGACACCAT+TGG + chr6_4:5017222-5017241 Msa0972730:three_prime_UTR 35.0%
CATCTGCAAGATGTGAAAAT+TGG - chr6_4:5017263-5017282 None:intergenic 35.0%
!!! GCAATTGGTTTTGGTTTGGT+AGG - chr6_4:5013331-5013350 None:intergenic 40.0%
!!! TGTGGCAATTGGTTTTGGTT+TGG - chr6_4:5013335-5013354 None:intergenic 40.0%
! TGGCATGGAAAAGTGCAAAA+TGG - chr6_4:5013466-5013485 None:intergenic 40.0%
GAAATTGGAACAACAACAGG+TGG - chr6_4:5013634-5013653 None:intergenic 40.0%
GGTGAAATTGGAACAACAAC+AGG - chr6_4:5013637-5013656 None:intergenic 40.0%
AAGGTGCACACTAGAATCAA+TGG - chr6_4:5013696-5013715 None:intergenic 40.0%
!! GGTTGCACTGATTGAAGATA+TGG + chr6_4:5013971-5013990 Msa0972730:intron 40.0%
!! TGCACTGATTGAAGATATGG+TGG + chr6_4:5013974-5013993 Msa0972730:intron 40.0%
ACTGATTGAAGATATGGTGG+TGG + chr6_4:5013977-5013996 Msa0972730:intron 40.0%
!! AGATATGGTGGTGGTTATTG+TGG + chr6_4:5013986-5014005 Msa0972730:intron 40.0%
TGATTGAATGTAACCCGTGT+TGG + chr6_4:5014176-5014195 Msa0972730:intron 40.0%
ACGTCTTCAATCTGTAGTGT+CGG + chr6_4:5014231-5014250 Msa0972730:intron 40.0%
CTCGTAAGTATGCAGTTCAT+TGG + chr6_4:5014402-5014421 Msa0972730:intron 40.0%
GTGCCTAAAGGATATAGAGT+AGG - chr6_4:5014531-5014550 None:intergenic 40.0%
CTCATGATAGTAGGACGTTA+GGG - chr6_4:5014582-5014601 None:intergenic 40.0%
ACTCATGATAGTAGGACGTT+AGG - chr6_4:5014583-5014602 None:intergenic 40.0%
GTCCTACTATCATGAGTCTA+TGG + chr6_4:5014586-5014605 Msa0972730:intron 40.0%
TCCCATAGACTCATGATAGT+AGG - chr6_4:5014591-5014610 None:intergenic 40.0%
TATCATGAGTCTATGGGACA+AGG + chr6_4:5014593-5014612 Msa0972730:intron 40.0%
CACACATCTACATTGGAACA+TGG - chr6_4:5014657-5014676 None:intergenic 40.0%
CTGAGAGTCCCACATTATAT+AGG + chr6_4:5014759-5014778 Msa0972730:intron 40.0%
TTGTATTGTAGGGTCGAGTT+AGG + chr6_4:5014837-5014856 Msa0972730:intron 40.0%
GCTCAACCCAAATTCTTAGA+TGG + chr6_4:5014859-5014878 Msa0972730:intron 40.0%
! AAATCTAGAATGTGACCAGG+TGG - chr6_4:5014928-5014947 None:intergenic 40.0%
! TGGAAATCTAGAATGTGACC+AGG - chr6_4:5014931-5014950 None:intergenic 40.0%
ACATTCTAGATTTCCAGTCC+TGG + chr6_4:5014935-5014954 Msa0972730:intron 40.0%
CATTCTAGATTTCCAGTCCT+GGG + chr6_4:5014936-5014955 Msa0972730:intron 40.0%
TTGTGTTGAGAGTCTCTCAT+TGG + chr6_4:5014969-5014988 Msa0972730:intron 40.0%
! TCTAAAGCTTTGGTCAAAGG+TGG - chr6_4:5015318-5015337 None:intergenic 40.0%
! ACCTTTGACCAAAGCTTTAG+AGG + chr6_4:5015317-5015336 Msa0972730:CDS 40.0%
!! ACCTCTAAAGCTTTGGTCAA+AGG - chr6_4:5015321-5015340 None:intergenic 40.0%
!! TAGAGCTACCTCTAAAGCTT+TGG - chr6_4:5015328-5015347 None:intergenic 40.0%
AAAAGTGATCGGAGGACTAA+CGG + chr6_4:5016538-5016557 Msa0972730:intron 40.0%
AACAAGTGCTCATAAACTCC+TGG + chr6_4:5016757-5016776 Msa0972730:intron 40.0%
AGTCTGGTAGAAACCATACA+AGG + chr6_4:5016901-5016920 Msa0972730:CDS 40.0%
TACACCAGCAGATTTAGTCT+AGG - chr6_4:5016989-5017008 None:intergenic 40.0%
!! GCACTCACTTTGGTTTGTAT+AGG + chr6_4:5017076-5017095 Msa0972730:three_prime_UTR 40.0%
GGTTTGTATAGGCCTGATTA+AGG + chr6_4:5017087-5017106 Msa0972730:three_prime_UTR 40.0%
TATAGGCCTGATTAAGGGTA+TGG + chr6_4:5017093-5017112 Msa0972730:three_prime_UTR 40.0%
TGCAAGATGTGAAAATTGGC+TGG - chr6_4:5017259-5017278 None:intergenic 40.0%
!! TCACAAGGGCATTGCAGAAA+AGG - chr6_4:5013715-5013734 None:intergenic 45.0%
TGACACTTACACATAGGGAC+CGG + chr6_4:5014131-5014150 Msa0972730:intron 45.0%
TGTCCAACACTCACACATGT+CGG + chr6_4:5014199-5014218 Msa0972730:intron 45.0%
!! CGGTGTTACCTAGCTCTTAA+TGG + chr6_4:5014251-5014270 Msa0972730:intron 45.0%
! TACCTAGCTCTTAATGGTGC+AGG + chr6_4:5014257-5014276 Msa0972730:intron 45.0%
AACCTGCACCATTAAGAGCT+AGG - chr6_4:5014262-5014281 None:intergenic 45.0%
ATAATGTGGGACTCTCAGCA+GGG - chr6_4:5014757-5014776 None:intergenic 45.0%
TATAATGTGGGACTCTCAGC+AGG - chr6_4:5014758-5014777 None:intergenic 45.0%
TGACCAGGTGGTTTGACATT+GGG - chr6_4:5014916-5014935 None:intergenic 45.0%
ACAGAGAAATACTCTGCCTC+AGG - chr6_4:5015632-5015651 None:intergenic 45.0%
AGCGAGAAAAAAGTGATCGG+AGG + chr6_4:5016530-5016549 Msa0972730:intron 45.0%
! GTTGGCCTCATAGTCAATAG+CGG + chr6_4:5016571-5016590 Msa0972730:intron 45.0%
GCAACACCATGCCATTATAG+TGG - chr6_4:5016607-5016626 None:intergenic 45.0%
CACGTCTTAAATCGTCTTCC+AGG - chr6_4:5016778-5016797 None:intergenic 45.0%
CAGACAACTATCCAAGCTAC+AGG + chr6_4:5016868-5016887 Msa0972730:CDS 45.0%
AACTATCCAAGCTACAGGAG+TGG + chr6_4:5016873-5016892 Msa0972730:CDS 45.0%
GTTGCCTAGACTAAATCTGC+TGG + chr6_4:5016982-5017001 Msa0972730:exon 45.0%
! GAGTGCAGTAGGCTTTAATC+AGG - chr6_4:5017062-5017081 None:intergenic 45.0%
AAAGCCTACTGCACTCACTT+TGG + chr6_4:5017066-5017085 Msa0972730:three_prime_UTR 45.0%
CAAACCAAAGTGAGTGCAGT+AGG - chr6_4:5017073-5017092 None:intergenic 45.0%
GCTGGTTGCTATAATGCCAA+TGG - chr6_4:5017241-5017260 None:intergenic 45.0%
!! TTGAGAGTGCCTTCATGCGA+GGG - chr6_4:5013489-5013508 None:intergenic 50.0%
!! ATTGAGAGTGCCTTCATGCG+AGG - chr6_4:5013490-5013509 None:intergenic 50.0%
!! TGAGTGTTGGACACCAACAC+GGG - chr6_4:5014192-5014211 None:intergenic 50.0%
!! GTGAGTGTTGGACACCAACA+CGG - chr6_4:5014193-5014212 None:intergenic 50.0%
TGTCCGACATGTGTGAGTGT+TGG - chr6_4:5014205-5014224 None:intergenic 50.0%
GCTCTTAATGGTGCAGGTTG+TGG + chr6_4:5014263-5014282 Msa0972730:intron 50.0%
GTGCAGGTTGTGGATGTGTA+GGG + chr6_4:5014273-5014292 Msa0972730:intron 50.0%
TCACCCAATGTCAAACCACC+TGG + chr6_4:5014910-5014929 Msa0972730:intron 50.0%
GTGACCAGGTGGTTTGACAT+TGG - chr6_4:5014917-5014936 None:intergenic 50.0%
CCAACCGAACCGTACAAAAC+CGG - chr6_4:5015045-5015064 None:intergenic 50.0%
!!! CGGTTTTGTACGGTTCGGTT+GGG + chr6_4:5015043-5015062 Msa0972730:intron 50.0%
TGAGGGACTCGCAACTTTAG+AGG + chr6_4:5015943-5015962 Msa0972730:CDS 50.0%
! GCAGACCGCTATTGACTATG+AGG - chr6_4:5016579-5016598 None:intergenic 50.0%
TAGTCAATAGCGGTCTGCTC+CGG + chr6_4:5016581-5016600 Msa0972730:intron 50.0%
CACCATGCCATTATAGTGGC+CGG - chr6_4:5016603-5016622 None:intergenic 50.0%
TTGAAGCCACTCCTGTAGCT+TGG - chr6_4:5016882-5016901 None:intergenic 50.0%
TACAGGAGTGGCTTCAAGTC+TGG + chr6_4:5016885-5016904 Msa0972730:CDS 50.0%
GGTGCAGGTTGTGGATGTGT+AGG + chr6_4:5014272-5014291 Msa0972730:intron 55.0%
ATTTCCAGTCCTGGGCGTGA+GGG + chr6_4:5014944-5014963 Msa0972730:intron 55.0%
!!! GCTGCCGGTTTTGTACGGTT+CGG + chr6_4:5015038-5015057 Msa0972730:intron 55.0%
!!! CCGGTTTTGTACGGTTCGGT+TGG + chr6_4:5015042-5015061 Msa0972730:intron 55.0%
GTCTGCTCCGGCCACTATAA+TGG + chr6_4:5016593-5016612 Msa0972730:intron 55.0%
CTCCGGCCACTATAATGGCA+TGG + chr6_4:5016598-5016617 Msa0972730:intron 55.0%
TCCATGCCACCCTCGCATGA+AGG + chr6_4:5013477-5013496 Msa0972730:CDS 60.0%
! AGAGTGCCTTCATGCGAGGG+TGG - chr6_4:5013486-5013505 None:intergenic 60.0%
GATTTCCAGTCCTGGGCGTG+AGG + chr6_4:5014943-5014962 Msa0972730:intron 60.0%
TTTCCAGTCCTGGGCGTGAG+GGG + chr6_4:5014945-5014964 Msa0972730:intron 60.0%
AACACAAACCCCTCACGCCC+AGG - chr6_4:5014956-5014975 None:intergenic 60.0%
CCGTACAAAACCGGCAGCGA+GGG - chr6_4:5015036-5015055 None:intergenic 60.0%
!!! CCCTCGCTGCCGGTTTTGTA+CGG + chr6_4:5015033-5015052 Msa0972730:intron 60.0%
ACCGTACAAAACCGGCAGCG+AGG - chr6_4:5015037-5015056 None:intergenic 60.0%
GCCTTCATGCGAGGGTGGCA+TGG - chr6_4:5013481-5013500 None:intergenic 65.0%
AAACCCCTCACGCCCAGGAC+TGG - chr6_4:5014951-5014970 None:intergenic 65.0%
!! TGGGAGGCATCCCTCGCTGC+CGG + chr6_4:5015023-5015042 Msa0972730:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5013262 5017317 5013262 ID=Msa0972730;Name=Msa0972730
chr6_4 mRNA 5013262 5017317 5013262 ID=Msa0972730-mRNA-1;Parent=Msa0972730;Name=Msa0972730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=108|1|1|1|1|1|4|327|186
chr6_4 exon 5013262 5013684 5013262 ID=Msa0972730-mRNA-1:exon:2147;Parent=Msa0972730-mRNA-1
chr6_4 exon 5015285 5015338 5015285 ID=Msa0972730-mRNA-1:exon:2148;Parent=Msa0972730-mRNA-1
chr6_4 exon 5015905 5015964 5015905 ID=Msa0972730-mRNA-1:exon:2149;Parent=Msa0972730-mRNA-1
chr6_4 exon 5016859 5017317 5016859 ID=Msa0972730-mRNA-1:exon:2150;Parent=Msa0972730-mRNA-1
chr6_4 five_prime_UTR 5013262 5013369 5013262 ID=Msa0972730-mRNA-1:five_prime_utr;Parent=Msa0972730-mRNA-1
chr6_4 CDS 5013370 5013684 5013370 ID=Msa0972730-mRNA-1:cds;Parent=Msa0972730-mRNA-1
chr6_4 CDS 5015285 5015338 5015285 ID=Msa0972730-mRNA-1:cds;Parent=Msa0972730-mRNA-1
chr6_4 CDS 5015905 5015964 5015905 ID=Msa0972730-mRNA-1:cds;Parent=Msa0972730-mRNA-1
chr6_4 CDS 5016859 5016990 5016859 ID=Msa0972730-mRNA-1:cds;Parent=Msa0972730-mRNA-1
chr6_4 three_prime_UTR 5016991 5017317 5016991 ID=Msa0972730-mRNA-1:three_prime_utr;Parent=Msa0972730-mRNA-1
Gene Sequence

>Msa0972730

ATGGCCACACTACTTTCATCTTCATCTCTTCACTCAATTCGTCTTTCTTCTTCTACAATCCCTTCTTCATCTTCTACTTCTTCTCATTCTCTTCCATTTTGCACTTTTCCATGCCACCCTCGCATGAAGGCACTCTCAATCAAGAAGAAAAACCGTTGTTTATTTGTGACCAAAGCAGTTGAAGATGAAACACAACAAGAACAAGAACAAGTTGTTACTGAGGTTGAACAACAGCAACAAACATCAGTAACTTCGGAGCAACCACCTGTTGTTGTTCCAATTTCACCTTCAGATACTCTTACTATGCTCTTTCAGGCAGAGGGAACATTGAATGAAACAGCTGTTCCACCTTTGACCAAAGCTTTAGAGGAGACAGAGGGTGTTAAAAATTTGAAGGTTAATGTATTTGAGGGACTCGCAACTTTAGAGTTGGAAAAGCAGACAACTATCCAAGCTACAGGAGTGGCTTCAAGTCTGGTAGAAACCATACAAGGTTTAGGCTTCAAATTGCAGACACTAAATCTCAGTTTTGATGATGAAGATGTTGCTGCAGTTGCCTAG

Protein sequence

>Msa0972730

MATLLSSSSLHSIRLSSSTIPSSSSTSSHSLPFCTFPCHPRMKALSIKKKNRCLFVTKAVEDETQQEQEQVVTEVEQQQQTSVTSEQPPVVVPISPSDTLTMLFQAEGTLNETAVPPLTKALEETEGVKNLKVNVFEGLATLELEKQTTIQATGVASSLVETIQGLGFKLQTLNLSFDDEDVAAVA*