AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190910 MtrunA17_Chr8g0360251 94.286 175 8 1 1 175 1 173 7.38e-108 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190910 AT3G15190.1 76.991 113 24 1 59 169 75 187 3.34e-56 176

Find 68 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGCCTCCTTAATCTTAA+TGG 0.170350 8_1:-34218737 Msa1190910:three_prime_UTR
CTCACTTTGGTACACATAAA+AGG 0.214581 8_1:+34218921 None:intergenic
ATAGCGGAATCAACCTTCTT+TGG 0.228814 8_1:+34220201 None:intergenic
TTCACCATCAAATTCAAATT+CGG 0.255357 8_1:-34220334 Msa1190910:CDS
AATCTTAATGGCAGTACTTT+TGG 0.260266 8_1:-34218725 Msa1190910:three_prime_UTR
CTCTACTGCCCTCTTTCTTC+TGG 0.276124 8_1:+34218991 None:intergenic
CTCTAGATTGGGAAATGTTT+CGG 0.285145 8_1:+34220295 None:intergenic
TTGAATTTGATGGTGAAGTT+AGG 0.285667 8_1:+34220340 None:intergenic
TCTAGATTGGGAAATGTTTC+GGG 0.288515 8_1:+34220296 None:intergenic
AAGTACTGCCATTAAGATTA+AGG 0.300171 8_1:+34218729 None:intergenic
AAATACAGTTAAGGGTAGTA+TGG 0.329261 8_1:-34220532 Msa1190910:five_prime_UTR
TCTCTGTCTTAAATTCAAAT+TGG 0.329349 8_1:-34218851 Msa1190910:three_prime_UTR
CTTATCCCTTCAATTTCAAT+TGG 0.340771 8_1:+34220456 None:intergenic
ATGAGGAGATTATGAAATAA+AGG 0.345001 8_1:+34220479 None:intergenic
GACTCAAGAGGGAGTGTTTA+CGG 0.350572 8_1:+34218643 None:intergenic
TTACAGTTACGGTACCTTCT+TGG 0.353552 8_1:+34220107 None:intergenic
TCACCATCAAATTCAAATTC+GGG 0.366835 8_1:-34220333 Msa1190910:CDS
TGGAAAAGAAATACAGTTAA+GGG 0.367102 8_1:-34220540 None:intergenic
CGCTATTAAGAGAGCTCGTC+AGG 0.368802 8_1:-34220184 Msa1190910:CDS
TTGGAAAAGAAATACAGTTA+AGG 0.384353 8_1:-34220541 None:intergenic
CTTGGTACGGGTTCTAATCT+CGG 0.388971 8_1:+34220125 None:intergenic
GCCTCAATTGAGAAGATGAT+TGG 0.400874 8_1:-34219097 Msa1190910:CDS
TGAATTTGATGGTGAAGTTA+GGG 0.412813 8_1:+34220341 None:intergenic
CTTGTGAAAGGACTCTAGAT+TGG 0.429591 8_1:+34220283 None:intergenic
AATACAACAATGACTAATTA+CGG 0.433579 8_1:+34218777 None:intergenic
CCTCATCCAATTGAAATTGA+AGG 0.440955 8_1:-34220462 Msa1190910:five_prime_UTR
CAGACACTGGCTTGAGGCAC+AGG 0.442721 8_1:+34218947 None:intergenic
AGGTATGTTATCTTTGAATA+CGG 0.445037 8_1:-34220262 Msa1190910:CDS
GAACCCGAATTTGAATTTGA+TGG 0.451976 8_1:+34220330 None:intergenic
GTTACGGTACCTTCTTGGTA+CGG 0.485051 8_1:+34220112 None:intergenic
TTGTGAAAGGACTCTAGATT+GGG 0.495815 8_1:+34220284 None:intergenic
TTGCGAGGCTGCTCCAAAGA+AGG 0.502462 8_1:-34220214 Msa1190910:CDS
TCCAATCATCTTCTCAATTG+AGG 0.507360 8_1:+34219096 None:intergenic
TTACGGTACCTTCTTGGTAC+GGG 0.515322 8_1:+34220113 None:intergenic
CCTTCAATTTCAATTGGATG+AGG 0.519784 8_1:+34220462 None:intergenic
GAGATGCTGTAAACATCAAA+GGG 0.521125 8_1:+34218799 None:intergenic
TTGATGGTGAAGTTAGGGTA+AGG 0.521257 8_1:+34220346 None:intergenic
CAGTAGAGATTCATCATGGC+TGG 0.521381 8_1:-34218976 Msa1190910:CDS
CTCATCCAATTGAAATTGAA+GGG 0.535516 8_1:-34220461 Msa1190910:five_prime_UTR
TGTGCGTTAAGTTCTCACTT+TGG 0.540079 8_1:+34218908 None:intergenic
AATCGACAAAGCAGTGAAAG+TGG 0.542695 8_1:-34219059 Msa1190910:CDS
GGAGATGCTGTAAACATCAA+AGG 0.551688 8_1:+34218798 None:intergenic
CTCGGCTTGCCAGAAGAAAG+AGG 0.573656 8_1:-34219000 Msa1190910:CDS
AAGATAACATACCTTGTGAA+AGG 0.576623 8_1:+34220271 None:intergenic
CGGGAGCAAATCGCAAGTCT+CGG 0.578912 8_1:-34219018 Msa1190910:CDS
TTCGTAAATGTGACTCAAGA+GGG 0.579867 8_1:+34218632 None:intergenic
AGACACTGGCTTGAGGCACA+GGG 0.582207 8_1:+34218948 None:intergenic
CAATCTAGAGTCCTTTCACA+AGG 0.588356 8_1:-34220282 Msa1190910:CDS
ACATAAAAGGATTCAGACAC+TGG 0.589690 8_1:+34218934 None:intergenic
AACAGAGAAAGAGATAGAGA+TGG 0.602358 8_1:-34220415 Msa1190910:exon
AGAGAGCTCGTCAGGCTGAG+AGG 0.604628 8_1:-34220176 Msa1190910:CDS
GATTAGAACCCGTACCAAGA+AGG 0.607531 8_1:-34220121 Msa1190910:intron
ATCGACAAAGCAGTGAAAGT+GGG 0.608479 8_1:-34219058 Msa1190910:CDS
TCGGCTTGCCAGAAGAAAGA+GGG 0.614940 8_1:-34218999 Msa1190910:CDS
ATTCGTAAATGTGACTCAAG+AGG 0.615486 8_1:+34218631 None:intergenic
ATGGAGATTATCTTACTCGT+CGG 0.621496 8_1:-34220513 Msa1190910:five_prime_UTR
TTGAATACGGTGCAGAAGCG+TGG 0.643767 8_1:-34220249 Msa1190910:CDS
GGGAACTTTGCATAGAAACA+CGG 0.644538 8_1:-34219038 Msa1190910:CDS
TGGTGTTGTTGTTGTTTGCG+AGG 0.647337 8_1:-34220229 Msa1190910:CDS
TGTTTACGGCATGACTGATG+TGG 0.653475 8_1:+34218657 None:intergenic
AGGGCAGTAGAGATTCATCA+TGG 0.654489 8_1:-34218980 Msa1190910:CDS
AGGATTCAGACACTGGCTTG+AGG 0.656971 8_1:+34218941 None:intergenic
GGAACTTTGCATAGAAACAC+GGG 0.657374 8_1:-34219037 Msa1190910:CDS
TACTGCCATTAAGATTAAGG+AGG 0.666490 8_1:+34218732 None:intergenic
CTGACGAGCTCTCTTAATAG+CGG 0.668959 8_1:+34220185 None:intergenic
AATTGAGAAGATGATTGGAG+AGG 0.673219 8_1:-34219092 Msa1190910:CDS
GACACTGGCTTGAGGCACAG+GGG 0.714773 8_1:+34218949 None:intergenic
GTTTACGGCATGACTGATGT+GGG 0.715569 8_1:+34218658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTCAAATTATTAT+TGG - chr8_1:34219134-34219153 Msa1190910:CDS 15.0%
!!! TCATTTTCTCAAATTATTAT+TGG - chr8_1:34219134-34219153 Msa1190910:CDS 15.0%
!! ATAGAATAGCTATAATAACA+TGG - chr8_1:34219223-34219242 Msa1190910:intron 20.0%
!!! AAAATTGATTCTATAGCTTT+AGG - chr8_1:34219291-34219310 Msa1190910:intron 20.0%
!!! AAATTGATTCTATAGCTTTA+GGG - chr8_1:34219292-34219311 Msa1190910:intron 20.0%
!!! ACATGATTTGTATGTATTTT+AGG - chr8_1:34219402-34219421 Msa1190910:intron 20.0%
!! TTATATGAGTTACACATTAT+GGG + chr8_1:34219492-34219511 None:intergenic 20.0%
!!! ATTGATAATATGCAAGAAAA+GGG - chr8_1:34219534-34219553 Msa1190910:intron 20.0%
!! AATACAACAATGACTAATTA+CGG + chr8_1:34220403-34220422 None:intergenic 20.0%
!! ATAGAATAGCTATAATAACA+TGG - chr8_1:34219223-34219242 Msa1190910:intron 20.0%
!!! AAAATTGATTCTATAGCTTT+AGG - chr8_1:34219291-34219310 Msa1190910:intron 20.0%
!!! AAATTGATTCTATAGCTTTA+GGG - chr8_1:34219292-34219311 Msa1190910:intron 20.0%
!!! ACATGATTTGTATGTATTTT+AGG - chr8_1:34219402-34219421 Msa1190910:intron 20.0%
!! TTATATGAGTTACACATTAT+GGG + chr8_1:34219492-34219511 None:intergenic 20.0%
!!! ATTGATAATATGCAAGAAAA+GGG - chr8_1:34219534-34219553 Msa1190910:intron 20.0%
!! AATACAACAATGACTAATTA+CGG + chr8_1:34220403-34220422 None:intergenic 20.0%
! ATGAGGAGATTATGAAATAA+AGG + chr8_1:34218701-34218720 None:intergenic 25.0%
! TTCACCATCAAATTCAAATT+CGG - chr8_1:34218843-34218862 Msa1190910:three_prime_UTR 25.0%
! AGGTATGTTATCTTTGAATA+CGG - chr8_1:34218915-34218934 Msa1190910:three_prime_UTR 25.0%
!! AATAGTTCAAGTTACAGTTA+CGG + chr8_1:34219084-34219103 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG - chr8_1:34219140-34219159 Msa1190910:CDS 25.0%
!! AAGCTATAGAATCAATTTTC+AGG + chr8_1:34219290-34219309 None:intergenic 25.0%
! TAATTATATAACTTGAGCGA+AGG + chr8_1:34219348-34219367 None:intergenic 25.0%
!!! CATGTTTTCAAGATGAAATT+GGG + chr8_1:34219387-34219406 None:intergenic 25.0%
!!! TCATGTTTTCAAGATGAAAT+TGG + chr8_1:34219388-34219407 None:intergenic 25.0%
! GTTATATGAGTTACACATTA+TGG + chr8_1:34219493-34219512 None:intergenic 25.0%
!! CTTTTCTTGCATATTATCAA+TGG + chr8_1:34219535-34219554 None:intergenic 25.0%
!! CATTGATAATATGCAAGAAA+AGG - chr8_1:34219533-34219552 Msa1190910:intron 25.0%
! ATGATGATATGATAGAGTAT+GGG - chr8_1:34219581-34219600 Msa1190910:intron 25.0%
! TGACAATTCAACAGTTTAAT+AGG - chr8_1:34219702-34219721 Msa1190910:intron 25.0%
! CAGAAATTAGAACTAAAACA+TGG + chr8_1:34219736-34219755 None:intergenic 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG - chr8_1:34220326-34220345 Msa1190910:CDS 25.0%
! ATGAGGAGATTATGAAATAA+AGG + chr8_1:34218701-34218720 None:intergenic 25.0%
! TTCACCATCAAATTCAAATT+CGG - chr8_1:34218843-34218862 Msa1190910:three_prime_UTR 25.0%
! AGGTATGTTATCTTTGAATA+CGG - chr8_1:34218915-34218934 Msa1190910:three_prime_UTR 25.0%
!! AATAGTTCAAGTTACAGTTA+CGG + chr8_1:34219084-34219103 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG - chr8_1:34219140-34219159 Msa1190910:CDS 25.0%
!! AAGCTATAGAATCAATTTTC+AGG + chr8_1:34219290-34219309 None:intergenic 25.0%
! TAATTATATAACTTGAGCGA+AGG + chr8_1:34219348-34219367 None:intergenic 25.0%
!!! CATGTTTTCAAGATGAAATT+GGG + chr8_1:34219387-34219406 None:intergenic 25.0%
!!! TCATGTTTTCAAGATGAAAT+TGG + chr8_1:34219388-34219407 None:intergenic 25.0%
! GTTATATGAGTTACACATTA+TGG + chr8_1:34219493-34219512 None:intergenic 25.0%
!! CTTTTCTTGCATATTATCAA+TGG + chr8_1:34219535-34219554 None:intergenic 25.0%
!! CATTGATAATATGCAAGAAA+AGG - chr8_1:34219533-34219552 Msa1190910:intron 25.0%
! ATGATGATATGATAGAGTAT+GGG - chr8_1:34219581-34219600 Msa1190910:intron 25.0%
! TGACAATTCAACAGTTTAAT+AGG - chr8_1:34219702-34219721 Msa1190910:intron 25.0%
! CAGAAATTAGAACTAAAACA+TGG + chr8_1:34219736-34219755 None:intergenic 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG - chr8_1:34220326-34220345 Msa1190910:CDS 25.0%
AAATACAGTTAAGGGTAGTA+TGG - chr8_1:34218645-34218664 Msa1190910:three_prime_UTR 30.0%
CTCATCCAATTGAAATTGAA+GGG - chr8_1:34218716-34218735 Msa1190910:three_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG + chr8_1:34218724-34218743 None:intergenic 30.0%
!! GTAAGGTTCTTCATTTTTGA+AGG + chr8_1:34218817-34218836 None:intergenic 30.0%
!! TGAATTTGATGGTGAAGTTA+GGG + chr8_1:34218839-34218858 None:intergenic 30.0%
!! TTGAATTTGATGGTGAAGTT+AGG + chr8_1:34218840-34218859 None:intergenic 30.0%
TCACCATCAAATTCAAATTC+GGG - chr8_1:34218844-34218863 Msa1190910:three_prime_UTR 30.0%
AAGATAACATACCTTGTGAA+AGG + chr8_1:34218909-34218928 None:intergenic 30.0%
ATAGCTATTCTATGAAGAAC+TGG + chr8_1:34219216-34219235 None:intergenic 30.0%
! ATAACTTGCCTTGAGAAATT+TGG - chr8_1:34219508-34219527 Msa1190910:intron 30.0%
GATGATGATATGATAGAGTA+TGG - chr8_1:34219580-34219599 Msa1190910:intron 30.0%
AAAAGCAAGCATTATGTACA+AGG + chr8_1:34219815-34219834 None:intergenic 30.0%
AATTTAAAAATGCGTTCACC+TGG - chr8_1:34219865-34219884 Msa1190910:intron 30.0%
TCTTACAATCAATTGTCTGT+AGG - chr8_1:34220001-34220020 Msa1190910:intron 30.0%
! AATCAATTGTCTGTAGGTTT+TGG - chr8_1:34220007-34220026 Msa1190910:intron 30.0%
! AAGTACTGCCATTAAGATTA+AGG + chr8_1:34220451-34220470 None:intergenic 30.0%
! AATCTTAATGGCAGTACTTT+TGG - chr8_1:34220452-34220471 Msa1190910:five_prime_UTR 30.0%
AAATACAGTTAAGGGTAGTA+TGG - chr8_1:34218645-34218664 Msa1190910:three_prime_UTR 30.0%
CTCATCCAATTGAAATTGAA+GGG - chr8_1:34218716-34218735 Msa1190910:three_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG + chr8_1:34218724-34218743 None:intergenic 30.0%
!! GTAAGGTTCTTCATTTTTGA+AGG + chr8_1:34218817-34218836 None:intergenic 30.0%
!! TGAATTTGATGGTGAAGTTA+GGG + chr8_1:34218839-34218858 None:intergenic 30.0%
!! TTGAATTTGATGGTGAAGTT+AGG + chr8_1:34218840-34218859 None:intergenic 30.0%
TCACCATCAAATTCAAATTC+GGG - chr8_1:34218844-34218863 Msa1190910:three_prime_UTR 30.0%
AAGATAACATACCTTGTGAA+AGG + chr8_1:34218909-34218928 None:intergenic 30.0%
ATAGCTATTCTATGAAGAAC+TGG + chr8_1:34219216-34219235 None:intergenic 30.0%
! ATAACTTGCCTTGAGAAATT+TGG - chr8_1:34219508-34219527 Msa1190910:intron 30.0%
GATGATGATATGATAGAGTA+TGG - chr8_1:34219580-34219599 Msa1190910:intron 30.0%
AAAAGCAAGCATTATGTACA+AGG + chr8_1:34219815-34219834 None:intergenic 30.0%
AATTTAAAAATGCGTTCACC+TGG - chr8_1:34219865-34219884 Msa1190910:intron 30.0%
TCTTACAATCAATTGTCTGT+AGG - chr8_1:34220001-34220020 Msa1190910:intron 30.0%
! AATCAATTGTCTGTAGGTTT+TGG - chr8_1:34220007-34220026 Msa1190910:intron 30.0%
! AAGTACTGCCATTAAGATTA+AGG + chr8_1:34220451-34220470 None:intergenic 30.0%
! AATCTTAATGGCAGTACTTT+TGG - chr8_1:34220452-34220471 Msa1190910:five_prime_UTR 30.0%
ATGGAGATTATCTTACTCGT+CGG - chr8_1:34218664-34218683 Msa1190910:three_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG + chr8_1:34218718-34218737 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG - chr8_1:34218715-34218734 Msa1190910:three_prime_UTR 35.0%
AACAGAGAAAGAGATAGAGA+TGG - chr8_1:34218762-34218781 Msa1190910:three_prime_UTR 35.0%
!! GGTTCTTCATTTTTGAAGGA+AGG + chr8_1:34218813-34218832 None:intergenic 35.0%
GAACCCGAATTTGAATTTGA+TGG + chr8_1:34218850-34218869 None:intergenic 35.0%
TCTAGATTGGGAAATGTTTC+GGG + chr8_1:34218884-34218903 None:intergenic 35.0%
CTCTAGATTGGGAAATGTTT+CGG + chr8_1:34218885-34218904 None:intergenic 35.0%
TTGTGAAAGGACTCTAGATT+GGG + chr8_1:34218896-34218915 None:intergenic 35.0%
!! TCTATAGCTTTAGGGATTAG+AGG - chr8_1:34219300-34219319 Msa1190910:intron 35.0%
!! CTATAGCTTTAGGGATTAGA+GGG - chr8_1:34219301-34219320 Msa1190910:intron 35.0%
ATGAAATTGGGCAATGACAA+TGG + chr8_1:34219375-34219394 None:intergenic 35.0%
AAAACAAGAACACAACTCCT+GGG + chr8_1:34219435-34219454 None:intergenic 35.0%
AAAAACAAGAACACAACTCC+TGG + chr8_1:34219436-34219455 None:intergenic 35.0%
TCAATGGTCCAAATTTCTCA+AGG + chr8_1:34219519-34219538 None:intergenic 35.0%
TATGATAGAGTATGGGATAG+TGG - chr8_1:34219588-34219607 Msa1190910:intron 35.0%
ATGATAGAGTATGGGATAGT+GGG - chr8_1:34219589-34219608 Msa1190910:intron 35.0%
AGGGATTCTAATTGTTTGTG+GGG + chr8_1:34219903-34219922 None:intergenic 35.0%
CAGGGATTCTAATTGTTTGT+GGG + chr8_1:34219904-34219923 None:intergenic 35.0%
TCAGGGATTCTAATTGTTTG+TGG + chr8_1:34219905-34219924 None:intergenic 35.0%
AACAATTAGAATCCCTGACA+TGG - chr8_1:34219907-34219926 Msa1190910:intron 35.0%
GTAGCTGATGTTATAATTGC+AGG - chr8_1:34219936-34219955 Msa1190910:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG + chr8_1:34220084-34220103 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG - chr8_1:34220085-34220104 Msa1190910:intron 35.0%
ACATAAAAGGATTCAGACAC+TGG + chr8_1:34220246-34220265 None:intergenic 35.0%
CTCACTTTGGTACACATAAA+AGG + chr8_1:34220259-34220278 None:intergenic 35.0%
GAGATGCTGTAAACATCAAA+GGG + chr8_1:34220381-34220400 None:intergenic 35.0%
ACATGCCTCCTTAATCTTAA+TGG - chr8_1:34220440-34220459 Msa1190910:five_prime_UTR 35.0%
TACTGCCATTAAGATTAAGG+AGG + chr8_1:34220448-34220467 None:intergenic 35.0%
ATGGAGATTATCTTACTCGT+CGG - chr8_1:34218664-34218683 Msa1190910:three_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG + chr8_1:34218718-34218737 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG - chr8_1:34218715-34218734 Msa1190910:three_prime_UTR 35.0%
AACAGAGAAAGAGATAGAGA+TGG - chr8_1:34218762-34218781 Msa1190910:three_prime_UTR 35.0%
!! GGTTCTTCATTTTTGAAGGA+AGG + chr8_1:34218813-34218832 None:intergenic 35.0%
GAACCCGAATTTGAATTTGA+TGG + chr8_1:34218850-34218869 None:intergenic 35.0%
TCTAGATTGGGAAATGTTTC+GGG + chr8_1:34218884-34218903 None:intergenic 35.0%
CTCTAGATTGGGAAATGTTT+CGG + chr8_1:34218885-34218904 None:intergenic 35.0%
TTGTGAAAGGACTCTAGATT+GGG + chr8_1:34218896-34218915 None:intergenic 35.0%
!! TCTATAGCTTTAGGGATTAG+AGG - chr8_1:34219300-34219319 Msa1190910:intron 35.0%
!! CTATAGCTTTAGGGATTAGA+GGG - chr8_1:34219301-34219320 Msa1190910:intron 35.0%
ATGAAATTGGGCAATGACAA+TGG + chr8_1:34219375-34219394 None:intergenic 35.0%
AAAACAAGAACACAACTCCT+GGG + chr8_1:34219435-34219454 None:intergenic 35.0%
AAAAACAAGAACACAACTCC+TGG + chr8_1:34219436-34219455 None:intergenic 35.0%
TCAATGGTCCAAATTTCTCA+AGG + chr8_1:34219519-34219538 None:intergenic 35.0%
TATGATAGAGTATGGGATAG+TGG - chr8_1:34219588-34219607 Msa1190910:intron 35.0%
ATGATAGAGTATGGGATAGT+GGG - chr8_1:34219589-34219608 Msa1190910:intron 35.0%
AGGGATTCTAATTGTTTGTG+GGG + chr8_1:34219903-34219922 None:intergenic 35.0%
CAGGGATTCTAATTGTTTGT+GGG + chr8_1:34219904-34219923 None:intergenic 35.0%
TCAGGGATTCTAATTGTTTG+TGG + chr8_1:34219905-34219924 None:intergenic 35.0%
AACAATTAGAATCCCTGACA+TGG - chr8_1:34219907-34219926 Msa1190910:intron 35.0%
GTAGCTGATGTTATAATTGC+AGG - chr8_1:34219936-34219955 Msa1190910:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG + chr8_1:34220084-34220103 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG - chr8_1:34220085-34220104 Msa1190910:intron 35.0%
ACATAAAAGGATTCAGACAC+TGG + chr8_1:34220246-34220265 None:intergenic 35.0%
CTCACTTTGGTACACATAAA+AGG + chr8_1:34220259-34220278 None:intergenic 35.0%
GAGATGCTGTAAACATCAAA+GGG + chr8_1:34220381-34220400 None:intergenic 35.0%
ACATGCCTCCTTAATCTTAA+TGG - chr8_1:34220440-34220459 Msa1190910:five_prime_UTR 35.0%
TACTGCCATTAAGATTAAGG+AGG + chr8_1:34220448-34220467 None:intergenic 35.0%
!! TTGATGGTGAAGTTAGGGTA+AGG + chr8_1:34218834-34218853 None:intergenic 40.0%
CTTGTGAAAGGACTCTAGAT+TGG + chr8_1:34218897-34218916 None:intergenic 40.0%
! CAATCTAGAGTCCTTTCACA+AGG - chr8_1:34218895-34218914 Msa1190910:three_prime_UTR 40.0%
! ATAGCGGAATCAACCTTCTT+TGG + chr8_1:34218979-34218998 None:intergenic 40.0%
TTACAGTTACGGTACCTTCT+TGG + chr8_1:34219073-34219092 None:intergenic 40.0%
!! TATTATTGGTGTCGGCATGT+TGG - chr8_1:34219148-34219167 Msa1190910:CDS 40.0%
AGAGGGAAGTTTGAGTAACA+TGG - chr8_1:34219318-34219337 Msa1190910:intron 40.0%
GTTTGATGTTTCCAGTACCA+GGG + chr8_1:34219677-34219696 None:intergenic 40.0%
TGTTTGATGTTTCCAGTACC+AGG + chr8_1:34219678-34219697 None:intergenic 40.0%
!!! GTGGGGTTTTATTATCTTCC+AGG + chr8_1:34219886-34219905 None:intergenic 40.0%
GCCTCAATTGAGAAGATGAT+TGG - chr8_1:34220080-34220099 Msa1190910:intron 40.0%
AATCGACAAAGCAGTGAAAG+TGG - chr8_1:34220118-34220137 Msa1190910:intron 40.0%
ATCGACAAAGCAGTGAAAGT+GGG - chr8_1:34220119-34220138 Msa1190910:intron 40.0%
GGGAACTTTGCATAGAAACA+CGG - chr8_1:34220139-34220158 Msa1190910:CDS 40.0%
GGAACTTTGCATAGAAACAC+GGG - chr8_1:34220140-34220159 Msa1190910:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG + chr8_1:34220272-34220291 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG + chr8_1:34220382-34220401 None:intergenic 40.0%
!! TTGATGGTGAAGTTAGGGTA+AGG + chr8_1:34218834-34218853 None:intergenic 40.0%
CTTGTGAAAGGACTCTAGAT+TGG + chr8_1:34218897-34218916 None:intergenic 40.0%
! CAATCTAGAGTCCTTTCACA+AGG - chr8_1:34218895-34218914 Msa1190910:three_prime_UTR 40.0%
! ATAGCGGAATCAACCTTCTT+TGG + chr8_1:34218979-34218998 None:intergenic 40.0%
TTACAGTTACGGTACCTTCT+TGG + chr8_1:34219073-34219092 None:intergenic 40.0%
!! TATTATTGGTGTCGGCATGT+TGG - chr8_1:34219148-34219167 Msa1190910:CDS 40.0%
AGAGGGAAGTTTGAGTAACA+TGG - chr8_1:34219318-34219337 Msa1190910:intron 40.0%
GTTTGATGTTTCCAGTACCA+GGG + chr8_1:34219677-34219696 None:intergenic 40.0%
TGTTTGATGTTTCCAGTACC+AGG + chr8_1:34219678-34219697 None:intergenic 40.0%
!!! GTGGGGTTTTATTATCTTCC+AGG + chr8_1:34219886-34219905 None:intergenic 40.0%
GCCTCAATTGAGAAGATGAT+TGG - chr8_1:34220080-34220099 Msa1190910:intron 40.0%
AATCGACAAAGCAGTGAAAG+TGG - chr8_1:34220118-34220137 Msa1190910:intron 40.0%
ATCGACAAAGCAGTGAAAGT+GGG - chr8_1:34220119-34220138 Msa1190910:intron 40.0%
GGGAACTTTGCATAGAAACA+CGG - chr8_1:34220139-34220158 Msa1190910:CDS 40.0%
GGAACTTTGCATAGAAACAC+GGG - chr8_1:34220140-34220159 Msa1190910:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG + chr8_1:34220272-34220291 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG + chr8_1:34220382-34220401 None:intergenic 40.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG - chr8_1:34218948-34218967 Msa1190910:CDS 45.0%
CTGACGAGCTCTCTTAATAG+CGG + chr8_1:34218995-34219014 None:intergenic 45.0%
! CTTGGTACGGGTTCTAATCT+CGG + chr8_1:34219055-34219074 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG - chr8_1:34219056-34219075 Msa1190910:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG + chr8_1:34219067-34219086 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG + chr8_1:34219068-34219087 None:intergenic 45.0%
!! GTATTTTAGGTGTCAGACCC+AGG - chr8_1:34219415-34219434 Msa1190910:intron 45.0%
!! TGGGATAGTGGGAGAGAAAA+TGG - chr8_1:34219600-34219619 Msa1190910:intron 45.0%
AGAATCCCTGACATGGTACA+CGG - chr8_1:34219914-34219933 Msa1190910:intron 45.0%
!!! TCTGTAGGTTTTGGAAGCAC+TGG - chr8_1:34220016-34220035 Msa1190910:intron 45.0%
AGGGCAGTAGAGATTCATCA+TGG - chr8_1:34220197-34220216 Msa1190910:CDS 45.0%
CAGTAGAGATTCATCATGGC+TGG - chr8_1:34220201-34220220 Msa1190910:CDS 45.0%
GTTTACGGCATGACTGATGT+GGG + chr8_1:34220522-34220541 None:intergenic 45.0%
TGTTTACGGCATGACTGATG+TGG + chr8_1:34220523-34220542 None:intergenic 45.0%
!! GACTCAAGAGGGAGTGTTTA+CGG + chr8_1:34220537-34220556 None:intergenic 45.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG - chr8_1:34218948-34218967 Msa1190910:CDS 45.0%
CTGACGAGCTCTCTTAATAG+CGG + chr8_1:34218995-34219014 None:intergenic 45.0%
! CTTGGTACGGGTTCTAATCT+CGG + chr8_1:34219055-34219074 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG - chr8_1:34219056-34219075 Msa1190910:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG + chr8_1:34219067-34219086 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG + chr8_1:34219068-34219087 None:intergenic 45.0%
!! GTATTTTAGGTGTCAGACCC+AGG - chr8_1:34219415-34219434 Msa1190910:intron 45.0%
!! TGGGATAGTGGGAGAGAAAA+TGG - chr8_1:34219600-34219619 Msa1190910:intron 45.0%
AGAATCCCTGACATGGTACA+CGG - chr8_1:34219914-34219933 Msa1190910:intron 45.0%
!!! TCTGTAGGTTTTGGAAGCAC+TGG - chr8_1:34220016-34220035 Msa1190910:intron 45.0%
AGGGCAGTAGAGATTCATCA+TGG - chr8_1:34220197-34220216 Msa1190910:CDS 45.0%
CAGTAGAGATTCATCATGGC+TGG - chr8_1:34220201-34220220 Msa1190910:CDS 45.0%
GTTTACGGCATGACTGATGT+GGG + chr8_1:34220522-34220541 None:intergenic 45.0%
TGTTTACGGCATGACTGATG+TGG + chr8_1:34220523-34220542 None:intergenic 45.0%
!! GACTCAAGAGGGAGTGTTTA+CGG + chr8_1:34220537-34220556 None:intergenic 45.0%
TTGAATACGGTGCAGAAGCG+TGG - chr8_1:34218928-34218947 Msa1190910:exon 50.0%
CGCTATTAAGAGAGCTCGTC+AGG - chr8_1:34218993-34219012 Msa1190910:CDS 50.0%
!! GTTGGTGCTAGTGTTGTGTC+CGG - chr8_1:34219176-34219195 Msa1190910:intron 50.0%
ACTGGCACAAACACAGACAC+CGG + chr8_1:34219198-34219217 None:intergenic 50.0%
!! TGTTTCAAGTTGCTGAGCCC+TGG - chr8_1:34219657-34219676 Msa1190910:intron 50.0%
AGCTACCGTGTACCATGTCA+GGG + chr8_1:34219922-34219941 None:intergenic 50.0%
! TCGGCTTGCCAGAAGAAAGA+GGG - chr8_1:34220178-34220197 Msa1190910:CDS 50.0%
CTCTACTGCCCTCTTTCTTC+TGG + chr8_1:34220189-34220208 None:intergenic 50.0%
!! AGGATTCAGACACTGGCTTG+AGG + chr8_1:34220239-34220258 None:intergenic 50.0%
TTGAATACGGTGCAGAAGCG+TGG - chr8_1:34218928-34218947 Msa1190910:exon 50.0%
CGCTATTAAGAGAGCTCGTC+AGG - chr8_1:34218993-34219012 Msa1190910:CDS 50.0%
!! GTTGGTGCTAGTGTTGTGTC+CGG - chr8_1:34219176-34219195 Msa1190910:intron 50.0%
ACTGGCACAAACACAGACAC+CGG + chr8_1:34219198-34219217 None:intergenic 50.0%
!! TGTTTCAAGTTGCTGAGCCC+TGG - chr8_1:34219657-34219676 Msa1190910:intron 50.0%
AGCTACCGTGTACCATGTCA+GGG + chr8_1:34219922-34219941 None:intergenic 50.0%
! TCGGCTTGCCAGAAGAAAGA+GGG - chr8_1:34220178-34220197 Msa1190910:CDS 50.0%
CTCTACTGCCCTCTTTCTTC+TGG + chr8_1:34220189-34220208 None:intergenic 50.0%
!! AGGATTCAGACACTGGCTTG+AGG + chr8_1:34220239-34220258 None:intergenic 50.0%
TTGCGAGGCTGCTCCAAAGA+AGG - chr8_1:34218963-34218982 Msa1190910:CDS 55.0%
!! TGGTGTCGGCATGTTGGTGT+TGG - chr8_1:34219154-34219173 Msa1190910:CDS 55.0%
!! GTCGGCATGTTGGTGTTGGT+TGG - chr8_1:34219158-34219177 Msa1190910:intron 55.0%
AAGTTGCTGAGCCCTGGTAC+TGG - chr8_1:34219663-34219682 Msa1190910:intron 55.0%
CAGCTACCGTGTACCATGTC+AGG + chr8_1:34219923-34219942 None:intergenic 55.0%
CGGGAGCAAATCGCAAGTCT+CGG - chr8_1:34220159-34220178 Msa1190910:CDS 55.0%
! CTCGGCTTGCCAGAAGAAAG+AGG - chr8_1:34220177-34220196 Msa1190910:CDS 55.0%
!! AGACACTGGCTTGAGGCACA+GGG + chr8_1:34220232-34220251 None:intergenic 55.0%
TTGCGAGGCTGCTCCAAAGA+AGG - chr8_1:34218963-34218982 Msa1190910:CDS 55.0%
!! TGGTGTCGGCATGTTGGTGT+TGG - chr8_1:34219154-34219173 Msa1190910:CDS 55.0%
!! GTCGGCATGTTGGTGTTGGT+TGG - chr8_1:34219158-34219177 Msa1190910:intron 55.0%
AAGTTGCTGAGCCCTGGTAC+TGG - chr8_1:34219663-34219682 Msa1190910:intron 55.0%
CAGCTACCGTGTACCATGTC+AGG + chr8_1:34219923-34219942 None:intergenic 55.0%
CGGGAGCAAATCGCAAGTCT+CGG - chr8_1:34220159-34220178 Msa1190910:CDS 55.0%
! CTCGGCTTGCCAGAAGAAAG+AGG - chr8_1:34220177-34220196 Msa1190910:CDS 55.0%
!! AGACACTGGCTTGAGGCACA+GGG + chr8_1:34220232-34220251 None:intergenic 55.0%
AGAGAGCTCGTCAGGCTGAG+AGG - chr8_1:34219001-34219020 Msa1190910:CDS 60.0%
!! GACACTGGCTTGAGGCACAG+GGG + chr8_1:34220231-34220250 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG + chr8_1:34220233-34220252 None:intergenic 60.0%
AGAGAGCTCGTCAGGCTGAG+AGG - chr8_1:34219001-34219020 Msa1190910:CDS 60.0%
!! GACACTGGCTTGAGGCACAG+GGG + chr8_1:34220231-34220250 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG + chr8_1:34220233-34220252 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 34218642 34220557 34218642 ID=Msa1190910;Name=Msa1190910
chr8_1 mRNA 34218642 34220557 34218642 ID=Msa1190910-mRNA-1;Parent=Msa1190910;Name=Msa1190910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|1|1|2|304|175
chr8_1 exon 34218642 34219176 34218642 ID=Msa1190910-mRNA-1:exon:11517;Parent=Msa1190910-mRNA-1
chr8_1 exon 34220122 34220557 34220122 ID=Msa1190910-mRNA-1:exon:11516;Parent=Msa1190910-mRNA-1
chr8_1 five_prime_UTR 34220419 34220557 34220419 ID=Msa1190910-mRNA-1:five_prime_utr;Parent=Msa1190910-mRNA-1
chr8_1 CDS 34220122 34220418 34220122 ID=Msa1190910-mRNA-1:cds;Parent=Msa1190910-mRNA-1
chr8_1 CDS 34218946 34219176 34218946 ID=Msa1190910-mRNA-1:cds;Parent=Msa1190910-mRNA-1
chr8_1 three_prime_UTR 34218642 34218945 34218642 ID=Msa1190910-mRNA-1:three_prime_utr;Parent=Msa1190910-mRNA-1
Gene Sequence

>Msa1190910

ATGGCTTCAGTTTCATGTTCATTGTTGAACCTTCCTTCAAAAATGAAGAACCTTACCCTAACTTCACCATCAAATTCAAATTCGGGTTCACTAAGTTTCTCCCGAAACATTTCCCAATCTAGAGTCCTTTCACAAGGTATGTTATCTTTGAATACGGTGCAGAAGCGTGGTGTTGTTGTTGTTTGCGAGGCTGCTCCAAAGAAGGTTGATTCCGCTATTAAGAGAGCTCGTCAGGCTGAGAGGCGTCGCGTCTACAACAAAGCTCGTAAATCCGAGATTAGAACCCGTACCAAGAAGGTTTTGGAAGCACTGGAGTTGCTTAAAAAGAAATCTGATGCACAAGCAGAAGAAATTGCCTCAATTGAGAAGATGATTGGAGAGGCATACTCTATAATCGACAAAGCAGTGAAAGTGGGAACTTTGCATAGAAACACGGGAGCAAATCGCAAGTCTCGGCTTGCCAGAAGAAAGAGGGCAGTAGAGATTCATCATGGCTGGTATGCCCCTGTGCCTCAAGCCAGTGTCTGA

Protein sequence

>Msa1190910

MASVSCSLLNLPSKMKNLTLTSPSNSNSGSLSFSRNISQSRVLSQGMLSLNTVQKRGVVVVCEAAPKKVDSAIKRARQAERRRVYNKARKSEIRTRTKKVLEALELLKKKSDAQAEEIASIEKMIGEAYSIIDKAVKVGTLHRNTGANRKSRLARRKRAVEIHHGWYAPVPQASV*