Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944510 | sp|O49044|SODC2_MESCR | 69.872 | 156 | 38 | 5 | 17 | 164 | 2 | 156 | 2.35e-68 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944510 | G7KPK8 | 85.093 | 161 | 16 | 4 | 12 | 164 | 1 | 161 | 1.72e-85 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001460 | Msa0944510 | 0.808178 | 3.519039e-50 | -8.615850e-47 |
| Msa0003470 | Msa0944510 | 0.811059 | 8.458137e-51 | -8.615850e-47 |
| Msa0017120 | Msa0944510 | 0.806213 | 9.174660e-50 | -8.615850e-47 |
| Msa0030310 | Msa0944510 | 0.848177 | 7.234599e-60 | -8.615850e-47 |
| Msa0060350 | Msa0944510 | 0.822947 | 1.803515e-53 | -8.615850e-47 |
| Msa0079250 | Msa0944510 | 0.802808 | 4.706214e-49 | -8.615850e-47 |
| Msa0642650 | Msa0944510 | 0.812938 | 3.295919e-51 | -8.615850e-47 |
| Msa0659040 | Msa0944510 | 0.800186 | 1.621981e-48 | -8.615850e-47 |
| Msa0681890 | Msa0944510 | 0.805913 | 1.061264e-49 | -8.615850e-47 |
| Msa0703720 | Msa0944510 | 0.808370 | 3.201820e-50 | -8.615850e-47 |
| Msa0703760 | Msa0944510 | 0.807027 | 6.177017e-50 | -8.615850e-47 |
| Msa0709480 | Msa0944510 | 0.822191 | 2.702840e-53 | -8.615850e-47 |
| Msa0730180 | Msa0944510 | 0.820723 | 5.898159e-53 | -8.615850e-47 |
| Msa0735470 | Msa0944510 | 0.811368 | 7.250211e-51 | -8.615850e-47 |
| Msa0790830 | Msa0944510 | 0.805489 | 1.302106e-49 | -8.615850e-47 |
| Msa0797220 | Msa0944510 | 0.811168 | 8.010562e-51 | -8.615850e-47 |
| Msa0835510 | Msa0944510 | 0.800702 | 1.272979e-48 | -8.615850e-47 |
| Msa0143970 | Msa0944510 | 0.834308 | 3.231364e-56 | -8.615850e-47 |
| Msa0146470 | Msa0944510 | 0.809289 | 2.036216e-50 | -8.615850e-47 |
| Msa0157020 | Msa0944510 | 0.817784 | 2.754796e-52 | -8.615850e-47 |
| Msa0162030 | Msa0944510 | 0.830443 | 2.928768e-55 | -8.615850e-47 |
| Msa0162050 | Msa0944510 | 0.818881 | 1.555075e-52 | -8.615850e-47 |
| Msa0162070 | Msa0944510 | 0.800931 | 1.143490e-48 | -8.615850e-47 |
| Msa0172350 | Msa0944510 | 0.800546 | 1.369928e-48 | -8.615850e-47 |
| Msa0207570 | Msa0944510 | 0.805370 | 1.379106e-49 | -8.615850e-47 |
| Msa0217470 | Msa0944510 | 0.800841 | 1.192575e-48 | -8.615850e-47 |
| Msa0380430 | Msa0944510 | 0.811067 | 8.427739e-51 | -8.615850e-47 |
| Msa0417630 | Msa0944510 | 0.823794 | 1.143152e-53 | -8.615850e-47 |
| Msa0448160 | Msa0944510 | 0.800815 | 1.207511e-48 | -8.615850e-47 |
| Msa0476180 | Msa0944510 | 0.800469 | 1.420636e-48 | -8.615850e-47 |
| Msa0259330 | Msa0944510 | 0.809614 | 1.734224e-50 | -8.615850e-47 |
| Msa0267760 | Msa0944510 | 0.805900 | 1.067673e-49 | -8.615850e-47 |
| Msa0288380 | Msa0944510 | 0.818259 | 2.151613e-52 | -8.615850e-47 |
| Msa0482960 | Msa0944510 | 0.804549 | 2.048383e-49 | -8.615850e-47 |
| Msa0524050 | Msa0944510 | 0.817256 | 3.623786e-52 | -8.615850e-47 |
| Msa0538570 | Msa0944510 | 0.803125 | 4.046645e-49 | -8.615850e-47 |
| Msa0546380 | Msa0944510 | 0.849449 | 3.210793e-60 | -8.615850e-47 |
| Msa0581340 | Msa0944510 | 0.801925 | 7.152952e-49 | -8.615850e-47 |
| Msa0594390 | Msa0944510 | 0.804368 | 2.234263e-49 | -8.615850e-47 |
| Msa0600390 | Msa0944510 | 0.803499 | 3.386388e-49 | -8.615850e-47 |
| Msa0855020 | Msa0944510 | 0.802993 | 4.310327e-49 | -8.615850e-47 |
| Msa0872660 | Msa0944510 | 0.822609 | 2.161693e-53 | -8.615850e-47 |
| Msa0881050 | Msa0944510 | 0.820674 | 6.055942e-53 | -8.615850e-47 |
| Msa0881080 | Msa0944510 | 0.803030 | 4.234509e-49 | -8.615850e-47 |
| Msa0922540 | Msa0944510 | 0.807286 | 5.443659e-50 | -8.615850e-47 |
| Msa0925160 | Msa0944510 | 0.820921 | 5.311464e-53 | -8.615850e-47 |
| Msa0944510 | Msa0955260 | 0.808762 | 2.640697e-50 | -8.615850e-47 |
| Msa0944510 | Msa0955310 | 0.800276 | 1.554974e-48 | -8.615850e-47 |
| Msa0944510 | Msa0968080 | 0.804590 | 2.007897e-49 | -8.615850e-47 |
| Msa0944510 | Msa0972730 | 0.873661 | 1.236660e-67 | -8.615850e-47 |
| Msa0944510 | Msa0975080 | 0.818960 | 1.492353e-52 | -8.615850e-47 |
| Msa0944510 | Msa1015060 | 0.813342 | 2.687520e-51 | -8.615850e-47 |
| Msa0944510 | Msa1084490 | 0.802578 | 5.250381e-49 | -8.615850e-47 |
| Msa0944510 | Msa1090230 | 0.810137 | 1.338611e-50 | -8.615850e-47 |
| Msa0944510 | Msa1112610 | 0.800878 | 1.172215e-48 | -8.615850e-47 |
| Msa0944510 | Msa1125780 | 0.819089 | 1.395019e-52 | -8.615850e-47 |
| Msa0944510 | Msa1125950 | 0.820786 | 5.705228e-53 | -8.615850e-47 |
| Msa0944510 | Msa1129560 | 0.806565 | 7.734888e-50 | -8.615850e-47 |
| Msa0944510 | Msa1149760 | 0.821927 | 3.112472e-53 | -8.615850e-47 |
| Msa0944510 | Msa1166180 | 0.813532 | 2.440117e-51 | -8.615850e-47 |
| Msa0944510 | Msa1166280 | 0.806272 | 8.914917e-50 | -8.615850e-47 |
| Msa0944510 | Msa1171340 | 0.821338 | 4.258108e-53 | -8.615850e-47 |
| Msa0944510 | Msa1190910 | 0.811959 | 5.393077e-51 | -8.615850e-47 |
| Msa0944510 | Msa1200920 | 0.811843 | 5.714709e-51 | -8.615850e-47 |
| Msa0944510 | Msa1214900 | 0.830044 | 3.665886e-55 | -8.615850e-47 |
| Msa0944510 | Msa1221260 | 0.801703 | 7.944170e-49 | -8.615850e-47 |
| Msa0944510 | Msa1222360 | 0.812651 | 3.807860e-51 | -8.615850e-47 |
| Msa0944510 | Msa1222390 | 0.855348 | 6.699442e-62 | -8.615850e-47 |
| Msa0944510 | Msa1250670 | 0.804493 | 2.103916e-49 | -8.615850e-47 |
| Msa0944510 | Msa1309100 | 0.816633 | 5.000997e-52 | -8.615850e-47 |
| Msa0944510 | Msa1323060 | 0.806220 | 9.143423e-50 | -8.615850e-47 |
| Msa0944510 | Msa1325980 | 0.801713 | 7.907920e-49 | -8.615850e-47 |
| Msa0944510 | Msa1365210 | 0.800491 | 1.406018e-48 | -8.615850e-47 |
| Msa0944510 | Msa1367600 | 0.804800 | 1.815376e-49 | -8.615850e-47 |
| Msa0944510 | Msa1367940 | 0.826101 | 3.262430e-54 | -8.615850e-47 |
| Msa0944510 | Msa1376640 | 0.810356 | 1.200572e-50 | -8.615850e-47 |
| Msa0944510 | Msa1389470 | 0.821574 | 3.755106e-53 | -8.615850e-47 |
| Msa0944510 | Msa1391370 | 0.819158 | 1.345084e-52 | -8.615850e-47 |
| Msa0944510 | Msa1405770 | 0.816198 | 6.257809e-52 | -8.615850e-47 |
| Msa0944510 | Msa1406550 | 0.834143 | 3.553006e-56 | -8.615850e-47 |
| Msa0944510 | Msa1412080 | 0.801942 | 7.097687e-49 | -8.615850e-47 |
| Msa0944510 | Msa1430760 | 0.815060 | 1.122015e-51 | -8.615850e-47 |
| Msa0944510 | Msa1456650 | 0.803940 | 2.741999e-49 | -8.615850e-47 |
| Msa0944510 | Msa1462510 | 0.817111 | 3.907249e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944510 | MtrunA17_Chr6g0461291 | 85.093 | 161 | 16 | 4 | 12 | 164 | 1 | 161 | 3.30e-89 | 257 |
| Msa0944510 | MtrunA17_Chr7g0273571 | 60.265 | 151 | 51 | 5 | 19 | 161 | 2 | 151 | 3.64e-51 | 160 |
| Msa0944510 | MtrunA17_Chr4g0028001 | 52.817 | 142 | 58 | 4 | 27 | 160 | 63 | 203 | 1.08e-40 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944510 | AT5G18100.1 | 65.217 | 161 | 47 | 5 | 12 | 164 | 1 | 160 | 1.67e-63 | 192 |
| Msa0944510 | AT5G18100.2 | 65.079 | 126 | 40 | 3 | 12 | 134 | 1 | 125 | 1.37e-50 | 159 |
| Msa0944510 | AT1G08830.2 | 57.333 | 150 | 55 | 5 | 20 | 161 | 3 | 151 | 3.59e-46 | 148 |
| Msa0944510 | AT1G08830.1 | 57.333 | 150 | 55 | 5 | 20 | 161 | 3 | 151 | 3.59e-46 | 148 |
| Msa0944510 | AT2G28190.1 | 54.362 | 149 | 59 | 4 | 20 | 160 | 66 | 213 | 1.46e-42 | 141 |
Find 57 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACATCATGCACATATA+TGG | 0.216671 | 6_3:-21449457 | None:intergenic |
| TTTGATCTTATACAAATTTC+AGG | 0.220355 | 6_3:+21451262 | Msa0944510:three_prime_UTR |
| TGGACTCCAGTCATCTGTTT+AGG | 0.338377 | 6_3:+21451036 | Msa0944510:CDS |
| TGTTCTATGCGTAATGGTTT+CGG | 0.339241 | 6_3:+21451197 | Msa0944510:three_prime_UTR |
| GGGAATTATACACATGTAAC+TGG | 0.341579 | 6_3:+21447682 | Msa0944510:intron |
| GATTTGGGTAACATTGTTGC+AGG | 0.348387 | 6_3:+21448058 | Msa0944510:CDS |
| CTTTGAAGATCTATTATTTG+TGG | 0.370930 | 6_3:-21451068 | None:intergenic |
| GGGTTGTCTCCAGGTCTTCA+TGG | 0.372926 | 6_3:+21447715 | Msa0944510:CDS |
| AGTCATCTGTTTAGGATAGT+TGG | 0.379106 | 6_3:+21451044 | Msa0944510:exon |
| GAGCGACATGCCGGTGATTT+GGG | 0.381125 | 6_3:+21448043 | Msa0944510:CDS |
| TGAGCGACATGCCGGTGATT+TGG | 0.389627 | 6_3:+21448042 | Msa0944510:CDS |
| AATTGCTGACCAGGTATCAT+TGG | 0.425969 | 6_3:+21451016 | Msa0944510:intron |
| ATCGGAGATAACAACGTTAG+AGG | 0.441505 | 6_3:+21446362 | Msa0944510:CDS |
| GGGTTTCAATTCGTAGAAAC+CGG | 0.455054 | 6_3:-21449436 | None:intergenic |
| TCAAGTTGTTCTATGCGTAA+TGG | 0.460577 | 6_3:+21451191 | Msa0944510:three_prime_UTR |
| ATGCGTAATGGTTTCGGCCA+AGG | 0.474773 | 6_3:+21451203 | Msa0944510:three_prime_UTR |
| GGATTTCATATCCATGCTCT+TGG | 0.477680 | 6_3:+21447736 | Msa0944510:CDS |
| AACACATCATGCACATATAT+GGG | 0.480153 | 6_3:-21449456 | None:intergenic |
| TATGAGATGGAAGGTGGAAA+GGG | 0.492874 | 6_3:+21446314 | Msa0944510:CDS |
| ACCAATGGCTGCAACTCCAC+TGG | 0.499697 | 6_3:+21447766 | Msa0944510:CDS |
| ACCGGCATGTCGCTCATCAT+CGG | 0.503149 | 6_3:-21448035 | None:intergenic |
| ACCAGTGGAGTTGCAGCCAT+TGG | 0.511673 | 6_3:-21447767 | None:intergenic |
| GTATGAGATGGAAGGTGGAA+AGG | 0.513322 | 6_3:+21446313 | Msa0944510:CDS |
| AACATTGTTGCAGGCCCTGA+TGG | 0.520070 | 6_3:+21448067 | Msa0944510:CDS |
| TTCAATTCGTAGAAACCGGC+CGG | 0.525527 | 6_3:-21449432 | None:intergenic |
| GATTTCTATCAAAGATGAAA+AGG | 0.526235 | 6_3:+21448203 | Msa0944510:CDS |
| GGTGGAAAGGGAACAGTGAA+AGG | 0.528789 | 6_3:+21446326 | Msa0944510:CDS |
| AGAGTGTATGAGATGGAAGG+TGG | 0.531556 | 6_3:+21446308 | Msa0944510:CDS |
| AAAATAACAGGGTTGTCTCC+AGG | 0.534858 | 6_3:+21447706 | Msa0944510:CDS |
| CATGAGCTGAGCAAAACTAC+TGG | 0.538533 | 6_3:+21450413 | Msa0944510:CDS |
| CACTTTGTTCAAGACCCCAA+TGG | 0.540843 | 6_3:+21446392 | Msa0944510:CDS |
| AGCAAAACTACTGGAAATGC+AGG | 0.541389 | 6_3:+21450422 | Msa0944510:CDS |
| AAGGCAAACTAAGGTTGCCT+TGG | 0.551951 | 6_3:-21451220 | None:intergenic |
| GCTCCGTGATCCTTCTTGAG+TGG | 0.554152 | 6_3:-21448007 | None:intergenic |
| CAGAGAGTGTATGAGATGGA+AGG | 0.557046 | 6_3:+21446305 | Msa0944510:CDS |
| ACTCAAGGGAAGGCAAACTA+AGG | 0.557757 | 6_3:-21451229 | None:intergenic |
| TCAAATGTTGAAACTACTCA+AGG | 0.557849 | 6_3:-21451244 | None:intergenic |
| AAAGGTGTGGCTCTCATCAT+CGG | 0.560465 | 6_3:+21446344 | Msa0944510:CDS |
| TCACTTCAATCCACTCAAGA+AGG | 0.563861 | 6_3:+21447997 | Msa0944510:CDS |
| AGAACAGAGAGTGTATGAGA+TGG | 0.571472 | 6_3:+21446301 | Msa0944510:CDS |
| AACAATGTTACCCAAATCAC+CGG | 0.572762 | 6_3:-21448053 | None:intergenic |
| GCTCTTGGTGACACCACCAA+TGG | 0.572990 | 6_3:+21447751 | Msa0944510:CDS |
| AGTGGAGTTGCAGCCATTGG+TGG | 0.573666 | 6_3:-21447764 | None:intergenic |
| AACTATCCTAAACAGATGAC+TGG | 0.575122 | 6_3:-21451042 | None:intergenic |
| TGGTGGTGTCACCAAGAGCA+TGG | 0.577938 | 6_3:-21447747 | None:intergenic |
| ACCGATGATGAGCGACATGC+CGG | 0.585361 | 6_3:+21448034 | Msa0944510:CDS |
| TGTTGAAACTACTCAAGGGA+AGG | 0.606404 | 6_3:-21451239 | None:intergenic |
| TTCTTGAGTGGATTGAAGTG+AGG | 0.612233 | 6_3:-21447995 | None:intergenic |
| TCAATTCGTAGAAACCGGCC+GGG | 0.615818 | 6_3:-21449431 | None:intergenic |
| ATATGAAATCCATGAAGACC+TGG | 0.621175 | 6_3:-21447724 | None:intergenic |
| AATCCACTCAAGAAGGATCA+CGG | 0.630804 | 6_3:+21448004 | Msa0944510:CDS |
| CAAATGTTGAAACTACTCAA+GGG | 0.636032 | 6_3:-21451243 | None:intergenic |
| GAAAGAAGGTAATACCATCA+GGG | 0.648692 | 6_3:-21448081 | None:intergenic |
| GCATGTCGCTCATCATCGGT+AGG | 0.650098 | 6_3:-21448031 | None:intergenic |
| AGAGAGAGAAAGAACCATTG+GGG | 0.700696 | 6_3:-21446406 | None:intergenic |
| AAAGGGAACAGTGAAAGGTG+TGG | 0.714226 | 6_3:+21446331 | Msa0944510:CDS |
| GCAGGTGCAAGAGTAGCATG+CGG | 0.736736 | 6_3:+21450440 | Msa0944510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTTGAAAATTATTCA+AGG | - | chr6_3:21449649-21449668 | None:intergenic | 10.0% |
| !!! | ATAATTTTCAAATATATATC+AGG | + | chr6_3:21449652-21449671 | Msa0944510:intron | 10.0% |
| !!! | CTTTATTTATAATTAAATAC+CGG | + | chr6_3:21450060-21450079 | Msa0944510:intron | 10.0% |
| !!! | ATGATATTTATTTTCAATGT+GGG | + | chr6_3:21446670-21446689 | Msa0944510:intron | 15.0% |
| !! | TATCATATTAGATATATATC+AGG | + | chr6_3:21446910-21446929 | Msa0944510:intron | 15.0% |
| !! | ATCATAACATAGTATATATT+CGG | - | chr6_3:21447543-21447562 | None:intergenic | 15.0% |
| !!! | CTATGTTATGATTTTATATT+AGG | + | chr6_3:21447551-21447570 | Msa0944510:intron | 15.0% |
| !!! | TTTCTAGTTTTATATGATTT+TGG | + | chr6_3:21447612-21447631 | Msa0944510:intron | 15.0% |
| !! | TGATTTATTGTTAATTAAAG+TGG | + | chr6_3:21448288-21448307 | Msa0944510:intron | 15.0% |
| !! | GTAAAAAACTAAAATCTTAA+GGG | - | chr6_3:21448350-21448369 | None:intergenic | 15.0% |
| !! | TATAGAAACTAAAAAAATAG+AGG | - | chr6_3:21448924-21448943 | None:intergenic | 15.0% |
| !! | TAAATGACAAATTTCTTTAT+AGG | - | chr6_3:21449277-21449296 | None:intergenic | 15.0% |
| !!! | TATAAAGAAATTTGTCATTT+AGG | + | chr6_3:21449276-21449295 | Msa0944510:intron | 15.0% |
| !! | CGGTATTTAATTATAAATAA+AGG | - | chr6_3:21450062-21450081 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAGCTCAAAAAT+TGG | - | chr6_3:21450378-21450397 | None:intergenic | 15.0% |
| !!! | TTTTGAGCTTTTTTTTATAA+TGG | + | chr6_3:21450380-21450399 | Msa0944510:intron | 15.0% |
| !! | TTCATCAATAATATGAATAA+TGG | - | chr6_3:21450474-21450493 | None:intergenic | 15.0% |
| !! | TTCTTATCAAAATATTAGAT+TGG | + | chr6_3:21450585-21450604 | Msa0944510:intron | 15.0% |
| !! | ATTAACATATGTTTCATAAG+AGG | - | chr6_3:21446470-21446489 | None:intergenic | 20.0% |
| !!! | GATGATATTTATTTTCAATG+TGG | + | chr6_3:21446669-21446688 | Msa0944510:intron | 20.0% |
| !! | AAAAAAAAAAACAGCTTGTA+AGG | + | chr6_3:21447082-21447101 | Msa0944510:intron | 20.0% |
| !!! | CTATGAATTGGTTTATATAT+CGG | + | chr6_3:21447216-21447235 | Msa0944510:intron | 20.0% |
| !! | TGTCAAATAGTAATTATGAT+TGG | + | chr6_3:21447650-21447669 | Msa0944510:intron | 20.0% |
| !! | GTCAAATAGTAATTATGATT+GGG | + | chr6_3:21447651-21447670 | Msa0944510:intron | 20.0% |
| !! | ATATTGAATAATGAGAAAAG+TGG | - | chr6_3:21447799-21447818 | None:intergenic | 20.0% |
| !!! | CACTTTTCTTATCAAATATT+CGG | - | chr6_3:21447899-21447918 | None:intergenic | 20.0% |
| !! | TAAGTTAATCTGATAAAACA+TGG | + | chr6_3:21447928-21447947 | Msa0944510:intron | 20.0% |
| !! | AGATGATGAAAATTGTAAAA+TGG | - | chr6_3:21448323-21448342 | None:intergenic | 20.0% |
| !! | GGTAAAAAACTAAAATCTTA+AGG | - | chr6_3:21448351-21448370 | None:intergenic | 20.0% |
| !! | TAGAAATGTAAATCAGATTA+AGG | - | chr6_3:21448396-21448415 | None:intergenic | 20.0% |
| !!! | TCTTTTGTATTATGTTCATT+TGG | + | chr6_3:21448470-21448489 | Msa0944510:intron | 20.0% |
| !! | AACTTTGAATGAAGTTTAAT+TGG | + | chr6_3:21448518-21448537 | Msa0944510:intron | 20.0% |
| !!! | GAGGTAAGAATTTAAAATTT+TGG | + | chr6_3:21448829-21448848 | Msa0944510:intron | 20.0% |
| !!! | ATAAAAAGGTGAATTTTTCA+CGG | - | chr6_3:21449074-21449093 | None:intergenic | 20.0% |
| !! | TAACATAACATATTAACAAC+TGG | + | chr6_3:21449245-21449264 | Msa0944510:intron | 20.0% |
| !! | ACTAAATTGAGATACAAAAA+AGG | + | chr6_3:21449691-21449710 | Msa0944510:intron | 20.0% |
| !! | TAAAACTTACTTAACAAGTT+GGG | - | chr6_3:21449749-21449768 | None:intergenic | 20.0% |
| !!! | TTTATAATTAAATACCGGTT+AGG | + | chr6_3:21450065-21450084 | Msa0944510:intron | 20.0% |
| !! | ATTATTCTGGTAATTTAAGA+AGG | + | chr6_3:21450179-21450198 | Msa0944510:intron | 20.0% |
| !! | AGTAGATTATGATTTATTAC+TGG | - | chr6_3:21450506-21450525 | None:intergenic | 20.0% |
| !! | TGAATTATTGAAATGTTGTA+TGG | - | chr6_3:21450671-21450690 | None:intergenic | 20.0% |
| !!! | GTTGGATTAATATTTTATCT+CGG | + | chr6_3:21450751-21450770 | Msa0944510:intron | 20.0% |
| !!! | ACATGATTGTAATTTTCATA+GGG | - | chr6_3:21451120-21451139 | None:intergenic | 20.0% |
| !!! | AACATGATTGTAATTTTCAT+AGG | - | chr6_3:21451121-21451140 | None:intergenic | 20.0% |
| ! | CAATTCATAGTGTATCTATT+TGG | - | chr6_3:21447206-21447225 | None:intergenic | 25.0% |
| ! | CAAATAGATACACTATGAAT+TGG | + | chr6_3:21447204-21447223 | Msa0944510:intron | 25.0% |
| ! | TCTTATTCTCTTTACAAAAC+TGG | + | chr6_3:21447405-21447424 | Msa0944510:intron | 25.0% |
| ! | ATGTAACTGGAAAAATAACA+GGG | + | chr6_3:21447695-21447714 | Msa0944510:CDS | 25.0% |
| ! | ATTTATTCAATGTAAAGCGT+CGG | - | chr6_3:21447842-21447861 | None:intergenic | 25.0% |
| ! | TGAAAAAAGAAGAAGAAAGA+AGG | - | chr6_3:21448098-21448117 | None:intergenic | 25.0% |
| ! | GATTTCTATCAAAGATGAAA+AGG | + | chr6_3:21448203-21448222 | Msa0944510:CDS | 25.0% |
| ! | ATAAATCAGATCAAGTGATA+TGG | - | chr6_3:21448276-21448295 | None:intergenic | 25.0% |
| ! | AAAACTAAAATCTTAAGGGA+CGG | - | chr6_3:21448346-21448365 | None:intergenic | 25.0% |
| !!! | TACAAAGTGTTGTTAAATAG+TGG | + | chr6_3:21448631-21448650 | Msa0944510:intron | 25.0% |
| !! | ATCAATGAACTTGTTTGATT+AGG | + | chr6_3:21448859-21448878 | Msa0944510:intron | 25.0% |
| ! | CTAAGTGGTAGAAAATAAAA+AGG | - | chr6_3:21449088-21449107 | None:intergenic | 25.0% |
| ! | TTTAGTATTAACTGTTACCA+AGG | + | chr6_3:21449149-21449168 | Msa0944510:intron | 25.0% |
| ! | AACTACACAAAAGATATCAA+GGG | - | chr6_3:21449411-21449430 | None:intergenic | 25.0% |
| ! | TCAAAGATTAAACTGAGTAA+AGG | - | chr6_3:21449604-21449623 | None:intergenic | 25.0% |
| ! | TAAGAAAACTTGTATAAGGT+TGG | - | chr6_3:21449718-21449737 | None:intergenic | 25.0% |
| ! | GGATTAAGAAAACTTGTATA+AGG | - | chr6_3:21449722-21449741 | None:intergenic | 25.0% |
| ! | CTAAAACTTACTTAACAAGT+TGG | - | chr6_3:21449750-21449769 | None:intergenic | 25.0% |
| ! | TTGAATATAATCACATGTGT+TGG | - | chr6_3:21449950-21449969 | None:intergenic | 25.0% |
| ! | CTTCTCTAAATTGTTCTAAT+TGG | - | chr6_3:21450137-21450156 | None:intergenic | 25.0% |
| ! | TAGAATGAAAGGAATTATTC+TGG | + | chr6_3:21450166-21450185 | Msa0944510:intron | 25.0% |
| ! | ATTTAAGAAGGTTGTATGAA+AGG | + | chr6_3:21450191-21450210 | Msa0944510:intron | 25.0% |
| ! | AATTGTTATGAATCCAAAGA+GGG | - | chr6_3:21450328-21450347 | None:intergenic | 25.0% |
| ! | AAATTGTTATGAATCCAAAG+AGG | - | chr6_3:21450329-21450348 | None:intergenic | 25.0% |
| !!! | GCTTTTTTTTATAATGGAAC+AGG | + | chr6_3:21450386-21450405 | Msa0944510:intron | 25.0% |
| !!! | TTTTTTTATAATGGAACAGG+TGG | + | chr6_3:21450389-21450408 | Msa0944510:intron | 25.0% |
| ! | ATTCAGTAAGTAAATGAAGT+AGG | + | chr6_3:21450686-21450705 | Msa0944510:intron | 25.0% |
| ! | CAGTATCATGATTAATCTAA+AGG | - | chr6_3:21450777-21450796 | None:intergenic | 25.0% |
| ! | TTAGATTAATCATGATACTG+AGG | + | chr6_3:21450777-21450796 | Msa0944510:intron | 25.0% |
| ! | TAATCTTAATATGAGAGGAA+TGG | + | chr6_3:21450840-21450859 | Msa0944510:intron | 25.0% |
| !! | CTTTGAAGATCTATTATTTG+TGG | - | chr6_3:21451071-21451090 | None:intergenic | 25.0% |
| ATAAGAGGCAATTTCATAAG+AGG | - | chr6_3:21446455-21446474 | None:intergenic | 30.0% | |
| ! | TTATTTTCAATGTGGGACTT+TGG | + | chr6_3:21446677-21446696 | Msa0944510:intron | 30.0% |
| CAATTCACAATCTATCTACT+TGG | - | chr6_3:21446737-21446756 | None:intergenic | 30.0% | |
| CAAGTAGATAGATTGTGAAT+TGG | + | chr6_3:21446735-21446754 | Msa0944510:intron | 30.0% | |
| CTGAAAAGAGTTACTAAAGA+GGG | - | chr6_3:21446813-21446832 | None:intergenic | 30.0% | |
| TCTGAAAAGAGTTACTAAAG+AGG | - | chr6_3:21446814-21446833 | None:intergenic | 30.0% | |
| TCTATCTATTCGGTAATGTT+TGG | - | chr6_3:21446884-21446903 | None:intergenic | 30.0% | |
| GATATCAGAGTCTATCTATT+CGG | - | chr6_3:21446894-21446913 | None:intergenic | 30.0% | |
| ! | GTTTTTACGCTGAATATGTA+AGG | - | chr6_3:21446945-21446964 | None:intergenic | 30.0% |
| CATTGAAAAAAGATATCGTC+TGG | - | chr6_3:21447138-21447157 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCAATGTGTGACTT+CGG | + | chr6_3:21447146-21447165 | Msa0944510:intron | 30.0% |
| TGAAATGAGTTAACAAAGAG+TGG | - | chr6_3:21447280-21447299 | None:intergenic | 30.0% | |
| CCACTCTTTGTAAACTATTT+CGG | + | chr6_3:21447447-21447466 | Msa0944510:intron | 30.0% | |
| ACATTATCTCTTATCAATGC+TGG | + | chr6_3:21447470-21447489 | Msa0944510:intron | 30.0% | |
| CATGTAACTGGAAAAATAAC+AGG | + | chr6_3:21447694-21447713 | Msa0944510:CDS | 30.0% | |
| !! | GAAGTGTTTCAATGCAATTT+TGG | + | chr6_3:21447950-21447969 | Msa0944510:intron | 30.0% |
| CTATCAAAGATGAAAAGGTA+AGG | + | chr6_3:21448208-21448227 | Msa0944510:intron | 30.0% | |
| !! | CAAGTGATATGGTTCTAAAA+GGG | - | chr6_3:21448265-21448284 | None:intergenic | 30.0% |
| !! | TCAAGTGATATGGTTCTAAA+AGG | - | chr6_3:21448266-21448285 | None:intergenic | 30.0% |
| AGCACATTAGACATATGATT+CGG | - | chr6_3:21448428-21448447 | None:intergenic | 30.0% | |
| ! | ATGTTCATTTGGTTGATACT+TGG | + | chr6_3:21448481-21448500 | Msa0944510:intron | 30.0% |
| TAACAACACTTTGTACTGAA+TGG | - | chr6_3:21448626-21448645 | None:intergenic | 30.0% | |
| CTACATATTGAAAGTGAGAA+AGG | - | chr6_3:21448736-21448755 | None:intergenic | 30.0% | |
| AATATGTAGATTCCACTAAG+TGG | + | chr6_3:21448747-21448766 | Msa0944510:intron | 30.0% | |
| !! | CAAACAAGTTCATTGATTCT+TGG | - | chr6_3:21448856-21448875 | None:intergenic | 30.0% |
| TAAAGTGCAACTTACTTATC+TGG | + | chr6_3:21449027-21449046 | Msa0944510:intron | 30.0% | |
| CGGAACTATATTTATCAACT+TGG | - | chr6_3:21449054-21449073 | None:intergenic | 30.0% | |
| ! | TTATTTTCTACCACTTAGCT+TGG | + | chr6_3:21449090-21449109 | Msa0944510:intron | 30.0% |
| ! | AAAAGTAAGCATTTTGCATG+AGG | - | chr6_3:21449131-21449150 | None:intergenic | 30.0% |
| GAACTACACAAAAGATATCA+AGG | - | chr6_3:21449412-21449431 | None:intergenic | 30.0% | |
| AACACATCATGCACATATAT+GGG | - | chr6_3:21449459-21449478 | None:intergenic | 30.0% | |
| TAACACATCATGCACATATA+TGG | - | chr6_3:21449460-21449479 | None:intergenic | 30.0% | |
| TACAAATCAACTCATGTTTG+AGG | - | chr6_3:21449489-21449508 | None:intergenic | 30.0% | |
| ! | ATATATATCAGGTTAGTCCT+TGG | + | chr6_3:21449663-21449682 | Msa0944510:intron | 30.0% |
| ! | TCTCAATTTAGTCTTTACCA+AGG | - | chr6_3:21449683-21449702 | None:intergenic | 30.0% |
| ! | AATTAAATACCGGTTAGGAA+AGG | + | chr6_3:21450070-21450089 | Msa0944510:intron | 30.0% |
| AGCTATGTAGTTAGAATGAA+AGG | + | chr6_3:21450155-21450174 | Msa0944510:intron | 30.0% | |
| ATTGTTATGAATCCAAAGAG+GGG | - | chr6_3:21450327-21450346 | None:intergenic | 30.0% | |
| CATCATGACATAAACTCAAA+CGG | - | chr6_3:21450627-21450646 | None:intergenic | 30.0% | |
| CCTCTCATATTAAGATTATC+CGG | - | chr6_3:21450838-21450857 | None:intergenic | 30.0% | |
| CAGCTATAGAGAAATCAATT+TGG | - | chr6_3:21450901-21450920 | None:intergenic | 30.0% | |
| ACATTTCTGTCTTATGCTAA+CGG | - | chr6_3:21450940-21450959 | None:intergenic | 30.0% | |
| CAAATGTTGAAACTACTCAA+GGG | - | chr6_3:21451246-21451265 | None:intergenic | 30.0% | |
| TCAAATGTTGAAACTACTCA+AGG | - | chr6_3:21451247-21451266 | None:intergenic | 30.0% | |
| !! | TCTATCTACTTGGTAGTGTT+TGG | - | chr6_3:21446727-21446746 | None:intergenic | 35.0% |
| TACCAAACCAGCTTATAACA+AGG | + | chr6_3:21446784-21446803 | Msa0944510:intron | 35.0% | |
| AAAAACCACTTCAATTAGCC+TGG | + | chr6_3:21446959-21446978 | Msa0944510:intron | 35.0% | |
| ! | ATTAGCCTGAAATTGCCATT+GGG | - | chr6_3:21447044-21447063 | None:intergenic | 35.0% |
| ! | AATTAGCCTGAAATTGCCAT+TGG | - | chr6_3:21447045-21447064 | None:intergenic | 35.0% |
| TTTATATGTTCAGTAGCCCT+TGG | - | chr6_3:21447354-21447373 | None:intergenic | 35.0% | |
| !! | CTTTACAAAACTGGCTTGTA+AGG | + | chr6_3:21447414-21447433 | Msa0944510:intron | 35.0% |
| CCGAAATAGTTTACAAAGAG+TGG | - | chr6_3:21447450-21447469 | None:intergenic | 35.0% | |
| AGTATATATTCGGTAGTGCT+TGG | - | chr6_3:21447533-21447552 | None:intergenic | 35.0% | |
| AATTATGATTGGGATTGTGC+AGG | + | chr6_3:21447661-21447680 | Msa0944510:intron | 35.0% | |
| ATTATGATTGGGATTGTGCA+GGG | + | chr6_3:21447662-21447681 | Msa0944510:intron | 35.0% | |
| GGGAATTATACACATGTAAC+TGG | + | chr6_3:21447682-21447701 | Msa0944510:intron | 35.0% | |
| ATATGAAATCCATGAAGACC+TGG | - | chr6_3:21447727-21447746 | None:intergenic | 35.0% | |
| AACAATGTTACCCAAATCAC+CGG | - | chr6_3:21448056-21448075 | None:intergenic | 35.0% | |
| GAAAGAAGGTAATACCATCA+GGG | - | chr6_3:21448084-21448103 | None:intergenic | 35.0% | |
| AGAAAGAAGGTAATACCATC+AGG | - | chr6_3:21448085-21448104 | None:intergenic | 35.0% | |
| ACAATGTATAAGTTGTCCCT+TGG | + | chr6_3:21448139-21448158 | Msa0944510:intron | 35.0% | |
| CAATGTATAAGTTGTCCCTT+GGG | + | chr6_3:21448140-21448159 | Msa0944510:intron | 35.0% | |
| TGCAAAACAGAAAACTCTCA+AGG | - | chr6_3:21448172-21448191 | None:intergenic | 35.0% | |
| ! | TTGAGAGTTTTCTGTTTTGC+AGG | + | chr6_3:21448171-21448190 | Msa0944510:intron | 35.0% |
| ! | TTCTAAAAGGGAAGAGATGA+TGG | - | chr6_3:21448253-21448272 | None:intergenic | 35.0% |
| AATCAGATTAAGGATCCATG+AGG | - | chr6_3:21448386-21448405 | None:intergenic | 35.0% | |
| CTGGATAAGCACAATACTTA+GGG | - | chr6_3:21448545-21448564 | None:intergenic | 35.0% | |
| ACTGGATAAGCACAATACTT+AGG | - | chr6_3:21448546-21448565 | None:intergenic | 35.0% | |
| TCAAATTTCGCTGTGCTATA+TGG | - | chr6_3:21448577-21448596 | None:intergenic | 35.0% | |
| TTGCGAATTGCAGAAAATAG+TGG | - | chr6_3:21448693-21448712 | None:intergenic | 35.0% | |
| CAATCATTTGAACTAGACCT+TGG | - | chr6_3:21449169-21449188 | None:intergenic | 35.0% | |
| AGGAGATTGAAAAGGATGTT+CGG | + | chr6_3:21449204-21449223 | Msa0944510:intron | 35.0% | |
| ! | GATATCTTTTGTGTAGTTCC+CGG | + | chr6_3:21449413-21449432 | Msa0944510:intron | 35.0% |
| AATATCCGTGGCAAGTAAAT+AGG | + | chr6_3:21449557-21449576 | Msa0944510:intron | 35.0% | |
| ! | TTACTTAACAAGTTGGGACT+TGG | - | chr6_3:21449743-21449762 | None:intergenic | 35.0% |
| TTTAGCGACTTAACTGCAAA+TGG | + | chr6_3:21449765-21449784 | Msa0944510:intron | 35.0% | |
| ! | GCTTTTCTTCTAAGCTTCTT+TGG | + | chr6_3:21449844-21449863 | Msa0944510:intron | 35.0% |
| CTACACAACTAACATGTCAA+TGG | - | chr6_3:21449887-21449906 | None:intergenic | 35.0% | |
| CTTCACATTGAAGATGTATC+CGG | + | chr6_3:21449915-21449934 | Msa0944510:intron | 35.0% | |
| ATGTTGTATGGTATGAGTCA+AGG | - | chr6_3:21450659-21450678 | None:intergenic | 35.0% | |
| ! | GTAAATGAAGTAGGTTGACT+TGG | + | chr6_3:21450695-21450714 | Msa0944510:intron | 35.0% |
| TTAATCATGATACTGAGGTG+TGG | + | chr6_3:21450782-21450801 | Msa0944510:intron | 35.0% | |
| CCGGATAATCTTAATATGAG+AGG | + | chr6_3:21450835-21450854 | Msa0944510:intron | 35.0% | |
| AACTATCCTAAACAGATGAC+TGG | - | chr6_3:21451045-21451064 | None:intergenic | 35.0% | |
| ! | AGTCATCTGTTTAGGATAGT+TGG | + | chr6_3:21451044-21451063 | Msa0944510:exon | 35.0% |
| ! | TCAAGTTGTTCTATGCGTAA+TGG | + | chr6_3:21451191-21451210 | Msa0944510:three_prime_UTR | 35.0% |
| TGTTCTATGCGTAATGGTTT+CGG | + | chr6_3:21451197-21451216 | Msa0944510:three_prime_UTR | 35.0% | |
| ! | AGAACAGAGAGTGTATGAGA+TGG | + | chr6_3:21446301-21446320 | Msa0944510:CDS | 40.0% |
| TATGAGATGGAAGGTGGAAA+GGG | + | chr6_3:21446314-21446333 | Msa0944510:CDS | 40.0% | |
| ATCGGAGATAACAACGTTAG+AGG | + | chr6_3:21446362-21446381 | Msa0944510:CDS | 40.0% | |
| AGAGAGAGAAAGAACCATTG+GGG | - | chr6_3:21446409-21446428 | None:intergenic | 40.0% | |
| GAGAGAGAGAAAGAACCATT+GGG | - | chr6_3:21446410-21446429 | None:intergenic | 40.0% | |
| AGAGAGAGAGAAAGAACCAT+TGG | - | chr6_3:21446411-21446430 | None:intergenic | 40.0% | |
| !! | TTGGTAGTGTTTGGCATAAG+GGG | - | chr6_3:21446718-21446737 | None:intergenic | 40.0% |
| !! | CTTGGTAGTGTTTGGCATAA+GGG | - | chr6_3:21446719-21446738 | None:intergenic | 40.0% |
| !! | ACTTGGTAGTGTTTGGCATA+AGG | - | chr6_3:21446720-21446739 | None:intergenic | 40.0% |
| ! | GACCTTGTTATAAGCTGGTT+TGG | - | chr6_3:21446789-21446808 | None:intergenic | 40.0% |
| TCGGTAATGTTTGGCGTAAA+GGG | - | chr6_3:21446875-21446894 | None:intergenic | 40.0% | |
| TTCGGTAATGTTTGGCGTAA+AGG | - | chr6_3:21446876-21446895 | None:intergenic | 40.0% | |
| !!! | GTGGTCTTGACTTGGTATTT+TGG | + | chr6_3:21446981-21447000 | Msa0944510:intron | 40.0% |
| TTAGCCTGAAATTGCCATTG+GGG | - | chr6_3:21447043-21447062 | None:intergenic | 40.0% | |
| AAAAAACAGCTTGTAAGGCG+AGG | + | chr6_3:21447087-21447106 | Msa0944510:intron | 40.0% | |
| AAAAACAGCTTGTAAGGCGA+GGG | + | chr6_3:21447088-21447107 | Msa0944510:intron | 40.0% | |
| TTTGGCAGTGTTTGACGTAA+GGG | - | chr6_3:21447188-21447207 | None:intergenic | 40.0% | |
| ATTTGGCAGTGTTTGACGTA+AGG | - | chr6_3:21447189-21447208 | None:intergenic | 40.0% | |
| !! | ACTTACCAAACCGACTTGTA+AGG | + | chr6_3:21447249-21447268 | Msa0944510:intron | 40.0% |
| !! | CTTACCAAACCGACTTGTAA+GGG | + | chr6_3:21447250-21447269 | Msa0944510:intron | 40.0% |
| !! | AAAACTGGCTTGTAAGGTGA+GGG | + | chr6_3:21447420-21447439 | Msa0944510:intron | 40.0% |
| AAAATAACAGGGTTGTCTCC+AGG | + | chr6_3:21447706-21447725 | Msa0944510:CDS | 40.0% | |
| GGATTTCATATCCATGCTCT+TGG | + | chr6_3:21447736-21447755 | Msa0944510:CDS | 40.0% | |
| !! | TTCTTGAGTGGATTGAAGTG+AGG | - | chr6_3:21447998-21448017 | None:intergenic | 40.0% |
| TCACTTCAATCCACTCAAGA+AGG | + | chr6_3:21447997-21448016 | Msa0944510:CDS | 40.0% | |
| AATCCACTCAAGAAGGATCA+CGG | + | chr6_3:21448004-21448023 | Msa0944510:CDS | 40.0% | |
| GATTTGGGTAACATTGTTGC+AGG | + | chr6_3:21448058-21448077 | Msa0944510:CDS | 40.0% | |
| !! | GGAAGAGATGATGGAATTCA+TGG | - | chr6_3:21448244-21448263 | None:intergenic | 40.0% |
| GCTCAAATTCTACTACACGA+TGG | - | chr6_3:21448667-21448686 | None:intergenic | 40.0% | |
| ATGGAATGAACTCCACTTAG+TGG | - | chr6_3:21448762-21448781 | None:intergenic | 40.0% | |
| AGTGGAGTTCATTCCATACT+CGG | + | chr6_3:21448765-21448784 | Msa0944510:intron | 40.0% | |
| TACCTCTTCCAAGATCATCA+GGG | - | chr6_3:21448815-21448834 | None:intergenic | 40.0% | |
| TTACCTCTTCCAAGATCATC+AGG | - | chr6_3:21448816-21448835 | None:intergenic | 40.0% | |
| CGTTTCAAAGTGGAAAAACG+AGG | - | chr6_3:21448888-21448907 | None:intergenic | 40.0% | |
| ACAGAAGCTACGTTTCAAAG+TGG | - | chr6_3:21448898-21448917 | None:intergenic | 40.0% | |
| GTATATGAAGCCAAGCTAAG+TGG | - | chr6_3:21449103-21449122 | None:intergenic | 40.0% | |
| ! | AGTAAGCATTTTGCATGAGG+AGG | - | chr6_3:21449128-21449147 | None:intergenic | 40.0% |
| ACACTCGAAGGAGATTGAAA+AGG | + | chr6_3:21449196-21449215 | Msa0944510:intron | 40.0% | |
| GGAGATTGAAAAGGATGTTC+GGG | + | chr6_3:21449205-21449224 | Msa0944510:intron | 40.0% | |
| GAGATTGAAAAGGATGTTCG+GGG | + | chr6_3:21449206-21449225 | Msa0944510:intron | 40.0% | |
| GGGTTTCAATTCGTAGAAAC+CGG | - | chr6_3:21449439-21449458 | None:intergenic | 40.0% | |
| AGTAGCCTATTTACTTGCCA+CGG | - | chr6_3:21449565-21449584 | None:intergenic | 40.0% | |
| GCACAAACAAACTCAGACAT+TGG | - | chr6_3:21449800-21449819 | None:intergenic | 40.0% | |
| TAGATTCTGCCTTTCCTAAC+CGG | - | chr6_3:21450082-21450101 | None:intergenic | 40.0% | |
| AAAGGAGAAATCCTTTGCGA+AGG | + | chr6_3:21450209-21450228 | Msa0944510:intron | 40.0% | |
| CAATAATTCCACCTTCGCAA+AGG | - | chr6_3:21450223-21450242 | None:intergenic | 40.0% | |
| CTTTGCGAAGGTGGAATTAT+TGG | + | chr6_3:21450221-21450240 | Msa0944510:intron | 40.0% | |
| AATTTACCACTTCCCCTCTT+TGG | + | chr6_3:21450312-21450331 | Msa0944510:intron | 40.0% | |
| AGCAAAACTACTGGAAATGC+AGG | + | chr6_3:21450422-21450441 | Msa0944510:CDS | 40.0% | |
| TTGTATGGTATGAGTCAAGG+AGG | - | chr6_3:21450656-21450675 | None:intergenic | 40.0% | |
| CAGCCTCTCAAGTCAAATTT+CGG | + | chr6_3:21450726-21450745 | Msa0944510:intron | 40.0% | |
| TCAAGTCAAATTTCGGCTGT+TGG | + | chr6_3:21450733-21450752 | Msa0944510:intron | 40.0% | |
| ACAATTGCTAATTGCTGACC+AGG | + | chr6_3:21451007-21451026 | Msa0944510:intron | 40.0% | |
| AATTGCTGACCAGGTATCAT+TGG | + | chr6_3:21451016-21451035 | Msa0944510:intron | 40.0% | |
| TGTTGAAACTACTCAAGGGA+AGG | - | chr6_3:21451242-21451261 | None:intergenic | 40.0% | |
| ! | CAGAGAGTGTATGAGATGGA+AGG | + | chr6_3:21446305-21446324 | Msa0944510:CDS | 45.0% |
| AGAGTGTATGAGATGGAAGG+TGG | + | chr6_3:21446308-21446327 | Msa0944510:CDS | 45.0% | |
| GTATGAGATGGAAGGTGGAA+AGG | + | chr6_3:21446313-21446332 | Msa0944510:CDS | 45.0% | |
| AAAGGGAACAGTGAAAGGTG+TGG | + | chr6_3:21446331-21446350 | Msa0944510:CDS | 45.0% | |
| ! | AAAGGTGTGGCTCTCATCAT+CGG | + | chr6_3:21446344-21446363 | Msa0944510:CDS | 45.0% |
| CACTTTGTTCAAGACCCCAA+TGG | + | chr6_3:21446392-21446411 | Msa0944510:CDS | 45.0% | |
| ! | TGGTAGTGTTTGGCATAAGG+GGG | - | chr6_3:21446717-21446736 | None:intergenic | 45.0% |
| ! | AGGGAGACCTTGTTATAAGC+TGG | - | chr6_3:21446794-21446813 | None:intergenic | 45.0% |
| ! | AACCACTTCAATTAGCCTGG+TGG | + | chr6_3:21446962-21446981 | Msa0944510:intron | 45.0% |
| AATACCAAGTCAAGACCACC+AGG | - | chr6_3:21446980-21446999 | None:intergenic | 45.0% | |
| !! | TGGAGTGTTTTCTCCTCTCA+AGG | + | chr6_3:21447001-21447020 | Msa0944510:intron | 45.0% |
| ! | TTTTCTCCTCTCAAGGTCTC+AGG | + | chr6_3:21447008-21447027 | Msa0944510:intron | 45.0% |
| TTCTCCCCAATGGCAATTTC+AGG | + | chr6_3:21447036-21447055 | Msa0944510:intron | 45.0% | |
| TTGGCAGTGTTTGACGTAAG+GGG | - | chr6_3:21447187-21447206 | None:intergenic | 45.0% | |
| !! | CAAAACTGGCTTGTAAGGTG+AGG | + | chr6_3:21447419-21447438 | Msa0944510:intron | 45.0% |
| GAAAAGTGGAAACCAACCAG+TGG | - | chr6_3:21447785-21447804 | None:intergenic | 45.0% | |
| CTCTCAAGGAGATTTCCCAA+GGG | - | chr6_3:21448158-21448177 | None:intergenic | 45.0% | |
| ACTCTCAAGGAGATTTCCCA+AGG | - | chr6_3:21448159-21448178 | None:intergenic | 45.0% | |
| TGCTATATGGTCTCTCACAC+TGG | - | chr6_3:21448564-21448583 | None:intergenic | 45.0% | |
| GTGGAGTTCATTCCATACTC+GGG | + | chr6_3:21448766-21448785 | Msa0944510:intron | 45.0% | |
| TTCAATTCGTAGAAACCGGC+CGG | - | chr6_3:21449435-21449454 | None:intergenic | 45.0% | |
| ! | GATCGACAAGCAAAAGTACG+TGG | - | chr6_3:21449521-21449540 | None:intergenic | 45.0% |
| CTGCTTCAACTCAATATCCG+TGG | + | chr6_3:21449545-21449564 | Msa0944510:intron | 45.0% | |
| AGCGACTTAACTGCAAATGG+AGG | + | chr6_3:21449768-21449787 | Msa0944510:intron | 45.0% | |
| GCGACTTAACTGCAAATGGA+GGG | + | chr6_3:21449769-21449788 | Msa0944510:intron | 45.0% | |
| ! | CATGTGTTGGTGTTTGACAC+CGG | - | chr6_3:21449937-21449956 | None:intergenic | 45.0% |
| CGACATTGACACGTTAACAC+TGG | - | chr6_3:21449996-21450015 | None:intergenic | 45.0% | |
| TGCGAAGGTGGAATTATTGG+AGG | + | chr6_3:21450224-21450243 | Msa0944510:intron | 45.0% | |
| ATGAATCCAAAGAGGGGAAG+TGG | - | chr6_3:21450321-21450340 | None:intergenic | 45.0% | |
| CATGAGCTGAGCAAAACTAC+TGG | + | chr6_3:21450413-21450432 | Msa0944510:CDS | 45.0% | |
| ! | TTGACTTGAGAGGCTGCATA+GGG | - | chr6_3:21450722-21450741 | None:intergenic | 45.0% |
| !! | TTTGACTTGAGAGGCTGCAT+AGG | - | chr6_3:21450723-21450742 | None:intergenic | 45.0% |
| !! | CAGCCGAAATTTGACTTGAG+AGG | - | chr6_3:21450732-21450751 | None:intergenic | 45.0% |
| CTTATGCTAACGGTCTACAG+CGG | - | chr6_3:21450930-21450949 | None:intergenic | 45.0% | |
| TGGACTCCAGTCATCTGTTT+AGG | + | chr6_3:21451036-21451055 | Msa0944510:CDS | 45.0% | |
| AAGGCAAACTAAGGTTGCCT+TGG | - | chr6_3:21451223-21451242 | None:intergenic | 45.0% | |
| ACTCAAGGGAAGGCAAACTA+AGG | - | chr6_3:21451232-21451251 | None:intergenic | 45.0% | |
| GGTGGAAAGGGAACAGTGAA+AGG | + | chr6_3:21446326-21446345 | Msa0944510:CDS | 50.0% | |
| !!! | CCATCGCTTACGGTTTTGGA+AGG | - | chr6_3:21446620-21446639 | None:intergenic | 50.0% |
| CCTTCCAAAACCGTAAGCGA+TGG | + | chr6_3:21446617-21446636 | Msa0944510:intron | 50.0% | |
| TCCAAAACCGTAAGCGATGG+AGG | + | chr6_3:21446620-21446639 | Msa0944510:intron | 50.0% | |
| CCAAAACCGTAAGCGATGGA+GGG | + | chr6_3:21446621-21446640 | Msa0944510:intron | 50.0% | |
| GGTAGTGTTTGGCATAAGGG+GGG | - | chr6_3:21446716-21446735 | None:intergenic | 50.0% | |
| GACCACCAGGCTAATTGAAG+TGG | - | chr6_3:21446967-21446986 | None:intergenic | 50.0% | |
| ! | TTAGCCTGGTGGTCTTGACT+TGG | + | chr6_3:21446973-21446992 | Msa0944510:intron | 50.0% |
| ATCGAACCTGAGACCTTGAG+AGG | - | chr6_3:21447017-21447036 | None:intergenic | 50.0% | |
| TCAGGTTCGATTCTCCCCAA+TGG | + | chr6_3:21447026-21447045 | Msa0944510:intron | 50.0% | |
| TGGCAGTGTTTGACGTAAGG+GGG | - | chr6_3:21447186-21447205 | None:intergenic | 50.0% | |
| CACTCCCTTACAAGTCGGTT+TGG | - | chr6_3:21447257-21447276 | None:intergenic | 50.0% | |
| AGTGGCACTCCCTTACAAGT+CGG | - | chr6_3:21447262-21447281 | None:intergenic | 50.0% | |
| CGGTAGTGCTTGGCATAAGA+GGG | - | chr6_3:21447523-21447542 | None:intergenic | 50.0% | |
| TCGGTAGTGCTTGGCATAAG+AGG | - | chr6_3:21447524-21447543 | None:intergenic | 50.0% | |
| GGCTTTGCCTTCTTTACGTC+AGG | + | chr6_3:21447971-21447990 | Msa0944510:intron | 50.0% | |
| GTGAGGACCTGACGTAAAGA+AGG | - | chr6_3:21447981-21448000 | None:intergenic | 50.0% | |
| AACATTGTTGCAGGCCCTGA+TGG | + | chr6_3:21448067-21448086 | Msa0944510:CDS | 50.0% | |
| AACAACAGCTCTCCCGAGTA+TGG | - | chr6_3:21448781-21448800 | None:intergenic | 50.0% | |
| CATGCTGACCCTGATGATCT+TGG | + | chr6_3:21448804-21448823 | Msa0944510:intron | 50.0% | |
| GACCCTGATGATCTTGGAAG+AGG | + | chr6_3:21448810-21448829 | Msa0944510:intron | 50.0% | |
| GATTGAGCTACGACACTCGA+AGG | + | chr6_3:21449184-21449203 | Msa0944510:intron | 50.0% | |
| ! | TCTTTTGTGTAGTTCCCGGC+CGG | + | chr6_3:21449417-21449436 | Msa0944510:intron | 50.0% |
| TCAATTCGTAGAAACCGGCC+GGG | - | chr6_3:21449434-21449453 | None:intergenic | 50.0% | |
| TCCAATGTCCATGTCTGCGT+CGG | + | chr6_3:21450018-21450037 | Msa0944510:intron | 50.0% | |
| GGAGAAATCCTTTGCGAAGG+TGG | + | chr6_3:21450212-21450231 | Msa0944510:intron | 50.0% | |
| AGATTATCCGGCTTCCACAC+TGG | - | chr6_3:21450826-21450845 | None:intergenic | 50.0% | |
| GACTGGAGTCCAATGATACC+TGG | - | chr6_3:21451028-21451047 | None:intergenic | 50.0% | |
| ATGCGTAATGGTTTCGGCCA+AGG | + | chr6_3:21451203-21451222 | Msa0944510:three_prime_UTR | 50.0% | |
| ! | CCCTCCATCGCTTACGGTTT+TGG | - | chr6_3:21446624-21446643 | None:intergenic | 55.0% |
| GTGACACCCTCCATCGCTTA+CGG | - | chr6_3:21446630-21446649 | None:intergenic | 55.0% | |
| TCAATACACCCCCTACGCCA+AGG | + | chr6_3:21447334-21447353 | Msa0944510:intron | 55.0% | |
| CAATACACCCCCTACGCCAA+GGG | + | chr6_3:21447335-21447354 | Msa0944510:intron | 55.0% | |
| TTCAGTAGCCCTTGGCGTAG+GGG | - | chr6_3:21447346-21447365 | None:intergenic | 55.0% | |
| GTTCAGTAGCCCTTGGCGTA+GGG | - | chr6_3:21447347-21447366 | None:intergenic | 55.0% | |
| TGTTCAGTAGCCCTTGGCGT+AGG | - | chr6_3:21447348-21447367 | None:intergenic | 55.0% | |
| GGGTTGTCTCCAGGTCTTCA+TGG | + | chr6_3:21447715-21447734 | Msa0944510:CDS | 55.0% | |
| !! | TGGTGGTGTCACCAAGAGCA+TGG | - | chr6_3:21447750-21447769 | None:intergenic | 55.0% |
| ! | GCTCTTGGTGACACCACCAA+TGG | + | chr6_3:21447751-21447770 | Msa0944510:CDS | 55.0% |
| AGTGGAGTTGCAGCCATTGG+TGG | - | chr6_3:21447767-21447786 | None:intergenic | 55.0% | |
| ACCAATGGCTGCAACTCCAC+TGG | + | chr6_3:21447766-21447785 | Msa0944510:CDS | 55.0% | |
| ACCAGTGGAGTTGCAGCCAT+TGG | - | chr6_3:21447770-21447789 | None:intergenic | 55.0% | |
| ATGGCTGCAACTCCACTGGT+TGG | + | chr6_3:21447770-21447789 | Msa0944510:intron | 55.0% | |
| ! | ATCACGTGCGAGTGTCGTGT+TGG | - | chr6_3:21447866-21447885 | None:intergenic | 55.0% |
| GCTCCGTGATCCTTCTTGAG+TGG | - | chr6_3:21448010-21448029 | None:intergenic | 55.0% | |
| GCATGTCGCTCATCATCGGT+AGG | - | chr6_3:21448034-21448053 | None:intergenic | 55.0% | |
| ACCGATGATGAGCGACATGC+CGG | + | chr6_3:21448034-21448053 | Msa0944510:CDS | 55.0% | |
| ACCGGCATGTCGCTCATCAT+CGG | - | chr6_3:21448038-21448057 | None:intergenic | 55.0% | |
| TGAGCGACATGCCGGTGATT+TGG | + | chr6_3:21448042-21448061 | Msa0944510:CDS | 55.0% | |
| GAGCGACATGCCGGTGATTT+GGG | + | chr6_3:21448043-21448062 | Msa0944510:CDS | 55.0% | |
| ACCACTGAGCTGACACCTCA+TGG | + | chr6_3:21448368-21448387 | Msa0944510:intron | 55.0% | |
| ! | TCCATGAGGTGTCAGCTCAG+TGG | - | chr6_3:21448372-21448391 | None:intergenic | 55.0% |
| ACCGACGCAGACATGGACAT+TGG | - | chr6_3:21450022-21450041 | None:intergenic | 55.0% | |
| !! | ACGAAGTACCGACGCAGACA+TGG | - | chr6_3:21450029-21450048 | None:intergenic | 55.0% |
| GCAGGTGCAAGAGTAGCATG+CGG | + | chr6_3:21450440-21450459 | Msa0944510:CDS | 55.0% | |
| TTCCACACTGGATCCTCTGC+AGG | - | chr6_3:21450814-21450833 | None:intergenic | 55.0% | |
| AGAGGATCCAGTGTGGAAGC+CGG | + | chr6_3:21450816-21450835 | Msa0944510:intron | 55.0% | |
| TCAGTAGCCCTTGGCGTAGG+GGG | - | chr6_3:21447345-21447364 | None:intergenic | 60.0% | |
| AGCCTGCAGAGGATCCAGTG+TGG | + | chr6_3:21450809-21450828 | Msa0944510:intron | 60.0% | |
| GGTGTGGCTAGAGCCTGCAG+AGG | + | chr6_3:21450798-21450817 | Msa0944510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 21446287 | 21451282 | 21446287 | ID=Msa0944510;Name=Msa0944510 |
| chr6_3 | mRNA | 21446287 | 21451282 | 21446287 | ID=Msa0944510-mRNA-1;Parent=Msa0944510;Name=Msa0944510-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.66|0.71|0.85|0.66|0.71|7|225|164 |
| chr6_3 | exon | 21446287 | 21446413 | 21446287 | ID=Msa0944510-mRNA-1:exon:6371;Parent=Msa0944510-mRNA-1 |
| chr6_3 | exon | 21447683 | 21447787 | 21447683 | ID=Msa0944510-mRNA-1:exon:6372;Parent=Msa0944510-mRNA-1 |
| chr6_3 | exon | 21447993 | 21448088 | 21447993 | ID=Msa0944510-mRNA-1:exon:6373;Parent=Msa0944510-mRNA-1 |
| chr6_3 | exon | 21448193 | 21448224 | 21448193 | ID=Msa0944510-mRNA-1:exon:6374;Parent=Msa0944510-mRNA-1 |
| chr6_3 | exon | 21449429 | 21449480 | 21449429 | ID=Msa0944510-mRNA-1:exon:6375;Parent=Msa0944510-mRNA-1 |
| chr6_3 | exon | 21450408 | 21450461 | 21450408 | ID=Msa0944510-mRNA-1:exon:6376;Parent=Msa0944510-mRNA-1 |
| chr6_3 | exon | 21451029 | 21451282 | 21451029 | ID=Msa0944510-mRNA-1:exon:6377;Parent=Msa0944510-mRNA-1 |
| chr6_3 | CDS | 21446287 | 21446413 | 21446287 | ID=Msa0944510-mRNA-1:cds;Parent=Msa0944510-mRNA-1 |
| chr6_3 | CDS | 21447683 | 21447787 | 21447683 | ID=Msa0944510-mRNA-1:cds;Parent=Msa0944510-mRNA-1 |
| chr6_3 | CDS | 21447993 | 21448088 | 21447993 | ID=Msa0944510-mRNA-1:cds;Parent=Msa0944510-mRNA-1 |
| chr6_3 | CDS | 21448193 | 21448224 | 21448193 | ID=Msa0944510-mRNA-1:cds;Parent=Msa0944510-mRNA-1 |
| chr6_3 | CDS | 21449429 | 21449480 | 21449429 | ID=Msa0944510-mRNA-1:cds;Parent=Msa0944510-mRNA-1 |
| chr6_3 | CDS | 21450408 | 21450461 | 21450408 | ID=Msa0944510-mRNA-1:cds;Parent=Msa0944510-mRNA-1 |
| chr6_3 | CDS | 21451029 | 21451057 | 21451029 | ID=Msa0944510-mRNA-1:cds;Parent=Msa0944510-mRNA-1 |
| chr6_3 | three_prime_UTR | 21451058 | 21451282 | 21451058 | ID=Msa0944510-mRNA-1:three_prime_utr;Parent=Msa0944510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
