Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913080 | XP_013451989.1 | 96.210 | 343 | 13 | 0 | 1 | 343 | 1 | 343 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913080 | sp|Q8L518|CK2_ARATH | 63.914 | 327 | 117 | 1 | 17 | 343 | 20 | 345 | 6.29e-161 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa0913080 | 0.800427 | 1.448435e-48 | -8.615850e-47 |
| Msa0049910 | Msa0913080 | 0.805982 | 1.026192e-49 | -8.615850e-47 |
| Msa0056060 | Msa0913080 | 0.806538 | 7.835008e-50 | -8.615850e-47 |
| Msa0064300 | Msa0913080 | 0.803401 | 3.547579e-49 | -8.615850e-47 |
| Msa0299660 | Msa0913080 | 0.826039 | 3.376163e-54 | -8.615850e-47 |
| Msa0885830 | Msa0913080 | 0.846859 | 1.666812e-59 | -8.615850e-47 |
| Msa0913080 | Msa0950330 | 0.866955 | 1.952266e-65 | -8.615850e-47 |
| Msa0913080 | Msa1355890 | 0.810031 | 1.410911e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913080 | MtrunA17_Chr6g0466631 | 96.210 | 343 | 13 | 0 | 1 | 343 | 1 | 343 | 0.0 | 697 |
| Msa0913080 | MtrunA17_Chr1g0201341 | 77.193 | 342 | 78 | 0 | 1 | 342 | 1 | 342 | 0.0 | 575 |
| Msa0913080 | MtrunA17_Chr3g0081621 | 64.327 | 342 | 121 | 1 | 2 | 343 | 113 | 453 | 3.41e-169 | 480 |
| Msa0913080 | MtrunA17_Chr8g0354091 | 60.671 | 328 | 121 | 2 | 16 | 343 | 36 | 355 | 2.56e-151 | 430 |
| Msa0913080 | MtrunA17_Chr2g0307011 | 34.675 | 323 | 188 | 6 | 29 | 343 | 59 | 366 | 1.19e-56 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913080 | AT1G74320.1 | 63.914 | 327 | 117 | 1 | 17 | 343 | 20 | 345 | 6.40e-162 | 456 |
| Msa0913080 | AT4G09760.1 | 59.593 | 344 | 136 | 3 | 1 | 343 | 1 | 342 | 8.61e-160 | 451 |
| Msa0913080 | AT4G09760.2 | 59.593 | 344 | 136 | 3 | 1 | 343 | 1 | 342 | 8.61e-160 | 451 |
| Msa0913080 | AT1G71697.1 | 59.012 | 344 | 139 | 2 | 1 | 342 | 1 | 344 | 2.64e-156 | 442 |
| Msa0913080 | AT4G09760.3 | 56.000 | 225 | 96 | 3 | 1 | 224 | 1 | 223 | 1.91e-89 | 269 |
| Msa0913080 | AT4G09760.4 | 54.762 | 210 | 92 | 3 | 1 | 209 | 1 | 208 | 1.04e-80 | 245 |
| Msa0913080 | AT2G26830.1 | 36.422 | 313 | 181 | 5 | 35 | 339 | 58 | 360 | 9.11e-60 | 197 |
Find 72 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCAAACCATCTATTT+TGG | 0.099275 | 6_2:+23010297 | Msa0913080:CDS |
| ATCCCCTTTCATTTGGATTT+TGG | 0.109294 | 6_2:+23011007 | Msa0913080:three_prime_UTR |
| GTTAAAGAAGCCTACTTTAT+TGG | 0.134694 | 6_2:+23010832 | Msa0913080:CDS |
| CAAAAGGATATAAAGAATTT+TGG | 0.157757 | 6_2:+23009091 | Msa0913080:CDS |
| ATAAAGTAGGCTTCTTTAAC+TGG | 0.261588 | 6_2:-23010829 | None:intergenic |
| GCAGCTGTGGCTGTAGATTT+AGG | 0.289983 | 6_2:+23006925 | Msa0913080:CDS |
| GCTATCAACGAAGATATTTC+AGG | 0.295078 | 6_2:-23008880 | None:intergenic |
| TGTCACAATGATCTACAATA+TGG | 0.312751 | 6_2:+23009187 | Msa0913080:CDS |
| CTTTGTAATCCCCTTTCATT+TGG | 0.314612 | 6_2:+23011000 | Msa0913080:three_prime_UTR |
| TGGTCATGTTAGAAGGGTTT+TGG | 0.318564 | 6_2:+23007044 | Msa0913080:CDS |
| CTCTCTCTCCTCTACTTCTT+AGG | 0.333124 | 6_2:+23006140 | Msa0913080:five_prime_UTR |
| TCGACATACACTCAAATGTT+TGG | 0.349159 | 6_2:-23007119 | None:intergenic |
| GTTGAGGTGAATCCCTTAAA+AGG | 0.360377 | 6_2:+23006973 | Msa0913080:CDS |
| TATGCTGCGGGCGTTGTTAT+CGG | 0.369153 | 6_2:+23009141 | Msa0913080:CDS |
| TGCGAATCATTTCTGTGAAA+TGG | 0.373754 | 6_2:+23009477 | Msa0913080:CDS |
| AAAAGGTGCAATGACAAATC+AGG | 0.389457 | 6_2:+23006990 | Msa0913080:CDS |
| TTCGCAAGGTCAAATGCAAC+TGG | 0.390033 | 6_2:-23009460 | None:intergenic |
| CTTCTTGGTCGGTTCACTAC+TGG | 0.399364 | 6_2:+23007162 | Msa0913080:CDS |
| TCGGAAGAAAATCAAGAGAT+TGG | 0.401817 | 6_2:+23009160 | Msa0913080:CDS |
| AAAGTGATGGTCATGTTAGA+AGG | 0.403264 | 6_2:+23007037 | Msa0913080:CDS |
| CCCACAAGCCCCAAAATAGA+TGG | 0.429365 | 6_2:-23010307 | None:intergenic |
| GTGCAAAGAAGGCTCAGATT+TGG | 0.434338 | 6_2:+23008941 | Msa0913080:CDS |
| ATCCCAAAATCCAAATGAAA+GGG | 0.450829 | 6_2:-23011010 | None:intergenic |
| ATATTTCTCTTCTGCTTCAA+AGG | 0.453759 | 6_2:+23006351 | Msa0913080:five_prime_UTR |
| AGACATTTGAATTGTTGAAA+GGG | 0.457193 | 6_2:+23006869 | Msa0913080:CDS |
| AAGACATTTGAATTGTTGAA+AGG | 0.469355 | 6_2:+23006868 | Msa0913080:CDS |
| TCATATGCCTGGTGCAAAGA+AGG | 0.476216 | 6_2:+23008930 | Msa0913080:CDS |
| ATCTGAGCCTTCTTTGCACC+AGG | 0.486876 | 6_2:-23008937 | None:intergenic |
| TAAAAGTTTATGCTCGCAAA+AGG | 0.492692 | 6_2:+23009075 | Msa0913080:CDS |
| TTTCACAATCTTCATATGCC+TGG | 0.492944 | 6_2:+23008919 | Msa0913080:CDS |
| TTGAAGAGTTCATTCATGCC+CGG | 0.504881 | 6_2:+23007190 | Msa0913080:CDS |
| TATACATACTTGAGTTCTGA+AGG | 0.510778 | 6_2:+23009687 | Msa0913080:CDS |
| AGCAATTATGCCAATAAAGT+AGG | 0.516378 | 6_2:-23010842 | None:intergenic |
| CTCAGATTTGGCAGAGAATG+AGG | 0.517306 | 6_2:+23008953 | Msa0913080:CDS |
| AATCCCAAAATCCAAATGAA+AGG | 0.521684 | 6_2:-23011011 | None:intergenic |
| TTTGAGTGTATGTCGAAGAA+TGG | 0.526924 | 6_2:+23007126 | Msa0913080:CDS |
| AAAGCCAAGTGATGCTGAAG+TGG | 0.528186 | 6_2:+23010244 | Msa0913080:CDS |
| TACAATTGACTTTGACTACA+AGG | 0.531304 | 6_2:+23010778 | Msa0913080:CDS |
| AGGGTCCGCGCCTTCTTGGT+CGG | 0.538855 | 6_2:+23007151 | Msa0913080:CDS |
| TGAAGAGTTCATTCATGCCC+GGG | 0.542011 | 6_2:+23007191 | Msa0913080:CDS |
| TATCCACATGCAGAAAGTGA+TGG | 0.548317 | 6_2:+23006840 | Msa0913080:intron |
| TGATCCACTTCAGCATCACT+TGG | 0.550037 | 6_2:-23010248 | None:intergenic |
| GTGTATGTCGAAGAATGGAC+AGG | 0.552928 | 6_2:+23007131 | Msa0913080:CDS |
| ACAATATGGTAACATCATGA+TGG | 0.554878 | 6_2:+23009201 | Msa0913080:CDS |
| CAGATCTTGAGGAGCGTCGA+AGG | 0.559496 | 6_2:+23009658 | Msa0913080:intron |
| ATTATATGGCGAAGGAGTTG+AGG | 0.566600 | 6_2:+23007071 | Msa0913080:CDS |
| AAGTGATGGTCATGTTAGAA+GGG | 0.567355 | 6_2:+23007038 | Msa0913080:CDS |
| CTATCAACGAAGATATTTCA+GGG | 0.568554 | 6_2:-23008879 | None:intergenic |
| AGAACAGACCTAAGAAGTAG+AGG | 0.572318 | 6_2:-23006148 | None:intergenic |
| TAATGGTCTACCAGATCTTG+AGG | 0.574039 | 6_2:+23009647 | Msa0913080:intron |
| ACAAGGAGTTCTCAAGGCAG+AGG | 0.574763 | 6_2:+23010795 | Msa0913080:CDS |
| TGTTGAGTTAAGTATGCTGC+GGG | 0.576947 | 6_2:+23009129 | Msa0913080:CDS |
| TTGGTTCGATTATATGGCGA+AGG | 0.583342 | 6_2:+23007063 | Msa0913080:CDS |
| TTGACTACAAGGAGTTCTCA+AGG | 0.595449 | 6_2:+23010789 | Msa0913080:CDS |
| GTCAAGAACATGAGGCGTGT+CGG | 0.599809 | 6_2:-23009515 | None:intergenic |
| ACGAAGATATTTCAGGGTCG+CGG | 0.603740 | 6_2:-23008873 | None:intergenic |
| AAGATATTTCAGGGTCGCGG+AGG | 0.609947 | 6_2:-23008870 | None:intergenic |
| CTTGACTACAGTAAATATCC+CGG | 0.613111 | 6_2:+23009532 | Msa0913080:CDS |
| TTTCACAGAAATGATTCGCA+AGG | 0.613220 | 6_2:-23009474 | None:intergenic |
| AATGAAAGTTCTTGCAGCTG+TGG | 0.613557 | 6_2:+23006912 | Msa0913080:CDS |
| GAACATGAGGCGTGTCGGTG+TGG | 0.622313 | 6_2:-23009510 | None:intergenic |
| TCCCAAAATCCAAATGAAAG+GGG | 0.623632 | 6_2:-23011009 | None:intergenic |
| GGATCAGTTAGCGAATCTTG+TGG | 0.624605 | 6_2:+23010265 | Msa0913080:CDS |
| CAGTAGTGAACCGACCAAGA+AGG | 0.632842 | 6_2:-23007161 | None:intergenic |
| AATTGGCCGACGAAAAGTGA+TGG | 0.634847 | 6_2:+23007024 | Msa0913080:CDS |
| GAATCATTTCTGTGAAATGG+CGG | 0.647449 | 6_2:+23009480 | Msa0913080:CDS |
| TCGCAAGGTCAAATGCAACT+GGG | 0.649429 | 6_2:-23009459 | None:intergenic |
| TGATGATGTGAGTACTGTTG+AGG | 0.658386 | 6_2:+23006957 | Msa0913080:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.665640 | 6_2:-23009523 | None:intergenic |
| ATGTTGAGTTAAGTATGCTG+CGG | 0.667897 | 6_2:+23009128 | Msa0913080:CDS |
| GTGAACCGACCAAGAAGGCG+CGG | 0.686133 | 6_2:-23007156 | None:intergenic |
| TGTATGTCGAAGAATGGACA+GGG | 0.690528 | 6_2:+23007132 | Msa0913080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTCATCAAAAAA+TGG | - | chr6_2:23006694-23006713 | None:intergenic | 10.0% |
| !!! | TTGTTTTATATAGAAATAAA+AGG | + | chr6_2:23008061-23008080 | Msa0913080:intron | 10.0% |
| !! | TAGAAGTTGAAAAAAATAAT+GGG | - | chr6_2:23006409-23006428 | None:intergenic | 15.0% |
| !! | TTAGAAGTTGAAAAAAATAA+TGG | - | chr6_2:23006410-23006429 | None:intergenic | 15.0% |
| !! | AGATTAAGTAAATGATAAAA+TGG | - | chr6_2:23006590-23006609 | None:intergenic | 15.0% |
| !! | TTAATTCTAATAATAAAGTG+TGG | + | chr6_2:23007578-23007597 | Msa0913080:intron | 15.0% |
| !! | CTATGAAATAAAATAAAGAA+TGG | - | chr6_2:23007987-23008006 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTATTTCATAGA+TGG | + | chr6_2:23007988-23008007 | Msa0913080:intron | 15.0% |
| !! | AATAAACTATAACAATTGTA+GGG | - | chr6_2:23008593-23008612 | None:intergenic | 15.0% |
| !! | AAATAAACTATAACAATTGT+AGG | - | chr6_2:23008594-23008613 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCTTCTTGTTTT+TGG | + | chr6_2:23008822-23008841 | Msa0913080:intron | 15.0% |
| !! | AAGTAAGCTTAAAAATATAA+TGG | - | chr6_2:23009382-23009401 | None:intergenic | 15.0% |
| !! | ATTGAAAATAAATGTAATTG+AGG | - | chr6_2:23009585-23009604 | None:intergenic | 15.0% |
| !! | CTAACAATAAAATTTATTGT+CGG | - | chr6_2:23009740-23009759 | None:intergenic | 15.0% |
| !!! | TAAAATTATAAGTTGATATG+TGG | - | chr6_2:23010630-23010649 | None:intergenic | 15.0% |
| !! | ATGATAAAATGGTTTGAATA+TGG | - | chr6_2:23006579-23006598 | None:intergenic | 20.0% |
| !!! | TTTTCATCTTTTTCTTCAAA+AGG | + | chr6_2:23006635-23006654 | Msa0913080:intron | 20.0% |
| !!! | TTTCATCTTTTTCTTCAAAA+GGG | + | chr6_2:23006636-23006655 | Msa0913080:intron | 20.0% |
| !!! | TTTTTCTTATTTATGATGCA+TGG | + | chr6_2:23006780-23006799 | Msa0913080:intron | 20.0% |
| !!! | AGATTTTTATTTTATCAGCA+TGG | - | chr6_2:23007409-23007428 | None:intergenic | 20.0% |
| !! | TTAATTCCATTAGTAATGTT+TGG | + | chr6_2:23007497-23007516 | Msa0913080:intron | 20.0% |
| !! | TGAGTAAATCATTAACAAAT+TGG | + | chr6_2:23007613-23007632 | Msa0913080:intron | 20.0% |
| !! | TAAATCACAATAAAGCAAAA+GGG | - | chr6_2:23007781-23007800 | None:intergenic | 20.0% |
| !! | TAAAATACAATAAAGCAAAG+TGG | - | chr6_2:23007855-23007874 | None:intergenic | 20.0% |
| !! | ATATATCAACATTATTAACC+AGG | - | chr6_2:23008407-23008426 | None:intergenic | 20.0% |
| !! | TAAAAATACATTCAAAGTTG+TGG | + | chr6_2:23008695-23008714 | Msa0913080:intron | 20.0% |
| !!! | CAAAAGGATATAAAGAATTT+TGG | + | chr6_2:23009091-23009110 | Msa0913080:CDS | 20.0% |
| !! | TGAAACAACTATTAGAAAAA+TGG | - | chr6_2:23009825-23009844 | None:intergenic | 20.0% |
| !! | AAGTGAACTAAAAGTTAATA+AGG | + | chr6_2:23009906-23009925 | Msa0913080:intron | 20.0% |
| !! | TGTATAGTATTAGAATGAAT+GGG | - | chr6_2:23010508-23010527 | None:intergenic | 20.0% |
| !! | TTGTATAGTATTAGAATGAA+TGG | - | chr6_2:23010509-23010528 | None:intergenic | 20.0% |
| !! | ATATAACTAAAAATGTGTGA+TGG | + | chr6_2:23010940-23010959 | Msa0913080:three_prime_UTR | 20.0% |
| ! | CAAACAAAGAAATAAGCATT+TGG | - | chr6_2:23006448-23006467 | None:intergenic | 25.0% |
| ! | ATGGTTTGAATATGGAATAA+TGG | - | chr6_2:23006571-23006590 | None:intergenic | 25.0% |
| ! | AAGACATTTGAATTGTTGAA+AGG | + | chr6_2:23006868-23006887 | Msa0913080:CDS | 25.0% |
| ! | AGACATTTGAATTGTTGAAA+GGG | + | chr6_2:23006869-23006888 | Msa0913080:CDS | 25.0% |
| !! | TGTTTTCCTTAATAAGTCAA+AGG | + | chr6_2:23007235-23007254 | Msa0913080:intron | 25.0% |
| !! | AAACTACCTTTGACTTATTA+AGG | - | chr6_2:23007244-23007263 | None:intergenic | 25.0% |
| !!! | GTGAAACATCATTTTAATTC+CGG | + | chr6_2:23007302-23007321 | Msa0913080:intron | 25.0% |
| !! | AGCATAAACTTTTCTTATAC+CGG | - | chr6_2:23007337-23007356 | None:intergenic | 25.0% |
| !! | TCTTGTGTTTTTCTATTCAT+TGG | + | chr6_2:23007426-23007445 | Msa0913080:intron | 25.0% |
| !! | CAGATGATTGTTAGTTTATT+TGG | + | chr6_2:23007456-23007475 | Msa0913080:intron | 25.0% |
| ! | CTAAATCACAATAAAGCAAA+AGG | - | chr6_2:23007782-23007801 | None:intergenic | 25.0% |
| !! | GTATTTTCTATTAAACAGAG+AGG | - | chr6_2:23008210-23008229 | None:intergenic | 25.0% |
| !!! | ACATTTTCAATTTGAAGTGT+CGG | + | chr6_2:23008778-23008797 | Msa0913080:intron | 25.0% |
| !! | TATGCTTTGCATATTTTACT+AGG | + | chr6_2:23009035-23009054 | Msa0913080:intron | 25.0% |
| !! | TTGCATATTTTACTAGGAAA+TGG | + | chr6_2:23009041-23009060 | Msa0913080:intron | 25.0% |
| ! | TACAAGATTAATTTCGACTA+CGG | - | chr6_2:23009326-23009345 | None:intergenic | 25.0% |
| ! | AGTGATGGTATAAACTATAA+CGG | - | chr6_2:23009353-23009372 | None:intergenic | 25.0% |
| ! | TTTCTACTTATCAATGATAC+AGG | + | chr6_2:23009414-23009433 | Msa0913080:intron | 25.0% |
| !!! | TTGAGACATAAACTTGTTAA+TGG | + | chr6_2:23009630-23009649 | Msa0913080:intron | 25.0% |
| ! | TAGAGAAAAAAATCCAAATC+AGG | - | chr6_2:23009767-23009786 | None:intergenic | 25.0% |
| !!! | ATAGTTTGCTTGATTTTATG+TGG | + | chr6_2:23009786-23009805 | Msa0913080:intron | 25.0% |
| ! | TTCATATGTCTCTTCAATTT+CGG | + | chr6_2:23009932-23009951 | Msa0913080:intron | 25.0% |
| ! | TTAATTGTAAACTTGTACAC+AGG | + | chr6_2:23010218-23010237 | Msa0913080:intron | 25.0% |
| !!! | GCTTTTTCTTTTCACTTTTA+TGG | + | chr6_2:23010345-23010364 | Msa0913080:intron | 25.0% |
| ! | TTCAAAATAGATACACAACA+GGG | - | chr6_2:23010478-23010497 | None:intergenic | 25.0% |
| !!! | CCTTGAATTATTTTGAGATT+CGG | + | chr6_2:23010601-23010620 | Msa0913080:intron | 25.0% |
| !! | TATGATGTCATTCTGAAACT+TGG | + | chr6_2:23006236-23006255 | Msa0913080:intron | 30.0% |
| ATATTTCTCTTCTGCTTCAA+AGG | + | chr6_2:23006351-23006370 | Msa0913080:five_prime_UTR | 30.0% | |
| ACACAGAAAATTGTTGCAAT+TGG | - | chr6_2:23006489-23006508 | None:intergenic | 30.0% | |
| ! | TTTGTCATTGCACCTTTTAA+GGG | - | chr6_2:23006988-23007007 | None:intergenic | 30.0% |
| ! | ATTTGTCATTGCACCTTTTA+AGG | - | chr6_2:23006989-23007008 | None:intergenic | 30.0% |
| ! | AATGACAAATCAGGTTTTTG+AGG | + | chr6_2:23006999-23007018 | Msa0913080:CDS | 30.0% |
| TCCATTAGTAATGTTTGGTT+TGG | + | chr6_2:23007502-23007521 | Msa0913080:intron | 30.0% | |
| ACCAAACCAAACATTACTAA+TGG | - | chr6_2:23007506-23007525 | None:intergenic | 30.0% | |
| ! | TAGTCCAAAAAGCTTTTCTT+TGG | + | chr6_2:23007799-23007818 | Msa0913080:intron | 30.0% |
| ! | AGAACCAAAGAAAAGCTTTT+TGG | - | chr6_2:23007806-23007825 | None:intergenic | 30.0% |
| !! | GAAAAATGCTTAGCTTTGAA+AGG | + | chr6_2:23007943-23007962 | Msa0913080:intron | 30.0% |
| CAATAGTGTTTGGTATTGTT+TGG | - | chr6_2:23008137-23008156 | None:intergenic | 30.0% | |
| AGTTTCTGTCTATCAATATG+AGG | - | chr6_2:23008172-23008191 | None:intergenic | 30.0% | |
| GATCTATTGTCATGTTATCA+TGG | - | chr6_2:23008519-23008538 | None:intergenic | 30.0% | |
| AGAAAGAGACAAAGAAAAAC+AGG | + | chr6_2:23008567-23008586 | Msa0913080:intron | 30.0% | |
| ! | TGTTCCTTTTCAGTTACTTA+AGG | + | chr6_2:23008671-23008690 | Msa0913080:intron | 30.0% |
| ! | GTTCCTTTTCAGTTACTTAA+GGG | + | chr6_2:23008672-23008691 | Msa0913080:intron | 30.0% |
| TTACCCTTAAGTAACTGAAA+AGG | - | chr6_2:23008678-23008697 | None:intergenic | 30.0% | |
| CTATCAACGAAGATATTTCA+GGG | - | chr6_2:23008882-23008901 | None:intergenic | 30.0% | |
| TAAAAGTTTATGCTCGCAAA+AGG | + | chr6_2:23009075-23009094 | Msa0913080:CDS | 30.0% | |
| !!! | GGATATAAAGAATTTTGGCT+TGG | + | chr6_2:23009096-23009115 | Msa0913080:CDS | 30.0% |
| TGTCACAATGATCTACAATA+TGG | + | chr6_2:23009187-23009206 | Msa0913080:CDS | 30.0% | |
| ACAATATGGTAACATCATGA+TGG | + | chr6_2:23009201-23009220 | Msa0913080:CDS | 30.0% | |
| GTAGTCGAAATTAATCTTGT+AGG | + | chr6_2:23009325-23009344 | Msa0913080:intron | 30.0% | |
| ATATAATGGTACGTTAGTGA+TGG | - | chr6_2:23009368-23009387 | None:intergenic | 30.0% | |
| TGTATGAGCAATTCATTTAC+CGG | - | chr6_2:23009554-23009573 | None:intergenic | 30.0% | |
| ! | TATACATACTTGAGTTCTGA+AGG | + | chr6_2:23009687-23009706 | Msa0913080:CDS | 30.0% |
| TATTGTTAGAGATCCTGATT+TGG | + | chr6_2:23009751-23009770 | Msa0913080:intron | 30.0% | |
| CTTATGTGCTTGAAATTTGA+GGG | - | chr6_2:23009889-23009908 | None:intergenic | 30.0% | |
| ACTTATGTGCTTGAAATTTG+AGG | - | chr6_2:23009890-23009909 | None:intergenic | 30.0% | |
| AAATGGAGTTCAAATATCCT+CGG | + | chr6_2:23010084-23010103 | Msa0913080:intron | 30.0% | |
| ! | TAAAGAGTGCATAAACATCT+TGG | - | chr6_2:23010154-23010173 | None:intergenic | 30.0% |
| ! | TCTTGCAAACCATCTATTTT+GGG | + | chr6_2:23010298-23010317 | Msa0913080:CDS | 30.0% |
| GTTCAAAATAGATACACAAC+AGG | - | chr6_2:23010479-23010498 | None:intergenic | 30.0% | |
| ACGAAGTTGACAAAAAGAAA+TGG | - | chr6_2:23010547-23010566 | None:intergenic | 30.0% | |
| CCGAATCTCAAAATAATTCA+AGG | - | chr6_2:23010604-23010623 | None:intergenic | 30.0% | |
| ! | TACAATTGACTTTGACTACA+AGG | + | chr6_2:23010778-23010797 | Msa0913080:CDS | 30.0% |
| ATAAAGTAGGCTTCTTTAAC+TGG | - | chr6_2:23010832-23010851 | None:intergenic | 30.0% | |
| GTTAAAGAAGCCTACTTTAT+TGG | + | chr6_2:23010832-23010851 | Msa0913080:CDS | 30.0% | |
| AGCAATTATGCCAATAAAGT+AGG | - | chr6_2:23010845-23010864 | None:intergenic | 30.0% | |
| ATCCCAAAATCCAAATGAAA+GGG | - | chr6_2:23011013-23011032 | None:intergenic | 30.0% | |
| AATCCCAAAATCCAAATGAA+AGG | - | chr6_2:23011014-23011033 | None:intergenic | 30.0% | |
| TCATGTATTCTTCATTGCAG+TGG | + | chr6_2:23006286-23006305 | Msa0913080:intron | 35.0% | |
| ! | AAAAGGTGCAATGACAAATC+AGG | + | chr6_2:23006990-23007009 | Msa0913080:CDS | 35.0% |
| !!! | ATCAGGTTTTTGAGGTGAAT+TGG | + | chr6_2:23007007-23007026 | Msa0913080:CDS | 35.0% |
| AAAGTGATGGTCATGTTAGA+AGG | + | chr6_2:23007037-23007056 | Msa0913080:CDS | 35.0% | |
| AAGTGATGGTCATGTTAGAA+GGG | + | chr6_2:23007038-23007057 | Msa0913080:CDS | 35.0% | |
| !!! | AGGGTTTTGGTTCGATTATA+TGG | + | chr6_2:23007057-23007076 | Msa0913080:CDS | 35.0% |
| ! | AGTTGAGGTTTTCTTCGATA+GGG | + | chr6_2:23007086-23007105 | Msa0913080:CDS | 35.0% |
| TCGACATACACTCAAATGTT+TGG | - | chr6_2:23007122-23007141 | None:intergenic | 35.0% | |
| TTTGAGTGTATGTCGAAGAA+TGG | + | chr6_2:23007126-23007145 | Msa0913080:CDS | 35.0% | |
| ATGATGTTAATCACATACCC+GGG | - | chr6_2:23007211-23007230 | None:intergenic | 35.0% | |
| GATGATGTTAATCACATACC+CGG | - | chr6_2:23007212-23007231 | None:intergenic | 35.0% | |
| TTAATTCCGGTACAAGATTC+CGG | + | chr6_2:23007315-23007334 | Msa0913080:intron | 35.0% | |
| CAGTGATGATTACATTAGAG+TGG | + | chr6_2:23007700-23007719 | Msa0913080:intron | 35.0% | |
| TTACATTAGAGTGGTTTCTG+TGG | + | chr6_2:23007709-23007728 | Msa0913080:intron | 35.0% | |
| ! | TACCAAACACTATTGAGTTG+TGG | + | chr6_2:23008142-23008161 | Msa0913080:intron | 35.0% |
| TTCCACAACTCAATAGTGTT+TGG | - | chr6_2:23008147-23008166 | None:intergenic | 35.0% | |
| GCACATACATAATTGCGAAA+AGG | + | chr6_2:23008267-23008286 | Msa0913080:intron | 35.0% | |
| ! | TTGATTGGGCATAAGCTTTT+GGG | - | chr6_2:23008376-23008395 | None:intergenic | 35.0% |
| ACTGAAAAGGAACATGAACT+TGG | - | chr6_2:23008665-23008684 | None:intergenic | 35.0% | |
| GCTATCAACGAAGATATTTC+AGG | - | chr6_2:23008883-23008902 | None:intergenic | 35.0% | |
| TTTCACAATCTTCATATGCC+TGG | + | chr6_2:23008919-23008938 | Msa0913080:CDS | 35.0% | |
| ATGTTGAGTTAAGTATGCTG+CGG | + | chr6_2:23009128-23009147 | Msa0913080:CDS | 35.0% | |
| TCGGAAGAAAATCAAGAGAT+TGG | + | chr6_2:23009160-23009179 | Msa0913080:CDS | 35.0% | |
| TTTCACAGAAATGATTCGCA+AGG | - | chr6_2:23009477-23009496 | None:intergenic | 35.0% | |
| TGCGAATCATTTCTGTGAAA+TGG | + | chr6_2:23009477-23009496 | Msa0913080:CDS | 35.0% | |
| GAATCATTTCTGTGAAATGG+CGG | + | chr6_2:23009480-23009499 | Msa0913080:CDS | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | - | chr6_2:23009526-23009545 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+CGG | + | chr6_2:23009532-23009551 | Msa0913080:CDS | 35.0% | |
| GTATGAGCAATTCATTTACC+GGG | - | chr6_2:23009553-23009572 | None:intergenic | 35.0% | |
| GACCTTGTAACTTCAACAAA+TGG | + | chr6_2:23010067-23010086 | Msa0913080:intron | 35.0% | |
| ! | CTCCATTTGTTGAAGTTACA+AGG | - | chr6_2:23010072-23010091 | None:intergenic | 35.0% |
| AGTTCAAATATCCTCGGAAA+CGG | + | chr6_2:23010090-23010109 | Msa0913080:intron | 35.0% | |
| ! | CTCTTGCAAACCATCTATTT+TGG | + | chr6_2:23010297-23010316 | Msa0913080:CDS | 35.0% |
| ! | CTTGCAAACCATCTATTTTG+GGG | + | chr6_2:23010299-23010318 | Msa0913080:CDS | 35.0% |
| CTCAAAATAATTCAAGGCTC+AGG | - | chr6_2:23010598-23010617 | None:intergenic | 35.0% | |
| CTTTGTAATCCCCTTTCATT+TGG | + | chr6_2:23011000-23011019 | Msa0913080:three_prime_UTR | 35.0% | |
| ! | ATCCCCTTTCATTTGGATTT+TGG | + | chr6_2:23011007-23011026 | Msa0913080:three_prime_UTR | 35.0% |
| ! | TCCCCTTTCATTTGGATTTT+GGG | + | chr6_2:23011008-23011027 | Msa0913080:three_prime_UTR | 35.0% |
| TCCCAAAATCCAAATGAAAG+GGG | - | chr6_2:23011012-23011031 | None:intergenic | 35.0% | |
| !!! | TGGATTTTGGGATTGAGTTA+AGG | + | chr6_2:23011020-23011039 | Msa0913080:three_prime_UTR | 35.0% |
| AGAACAGACCTAAGAAGTAG+AGG | - | chr6_2:23006151-23006170 | None:intergenic | 40.0% | |
| TATCCACATGCAGAAAGTGA+TGG | + | chr6_2:23006840-23006859 | Msa0913080:intron | 40.0% | |
| AATGAAAGTTCTTGCAGCTG+TGG | + | chr6_2:23006912-23006931 | Msa0913080:CDS | 40.0% | |
| ! | TGATGATGTGAGTACTGTTG+AGG | + | chr6_2:23006957-23006976 | Msa0913080:CDS | 40.0% |
| GTTGAGGTGAATCCCTTAAA+AGG | + | chr6_2:23006973-23006992 | Msa0913080:CDS | 40.0% | |
| !! | ACATGACCATCACTTTTCGT+CGG | - | chr6_2:23007033-23007052 | None:intergenic | 40.0% |
| ! | TGGTCATGTTAGAAGGGTTT+TGG | + | chr6_2:23007044-23007063 | Msa0913080:CDS | 40.0% |
| ! | TTGGTTCGATTATATGGCGA+AGG | + | chr6_2:23007063-23007082 | Msa0913080:CDS | 40.0% |
| ATTATATGGCGAAGGAGTTG+AGG | + | chr6_2:23007071-23007090 | Msa0913080:CDS | 40.0% | |
| ! | GAGTTGAGGTTTTCTTCGAT+AGG | + | chr6_2:23007085-23007104 | Msa0913080:CDS | 40.0% |
| TGTATGTCGAAGAATGGACA+GGG | + | chr6_2:23007132-23007151 | Msa0913080:CDS | 40.0% | |
| TTGAAGAGTTCATTCATGCC+CGG | + | chr6_2:23007190-23007209 | Msa0913080:CDS | 40.0% | |
| CTTATACCGGAATCTTGTAC+CGG | - | chr6_2:23007324-23007343 | None:intergenic | 40.0% | |
| ATGAGATTACCTCCGATAGA+AGG | + | chr6_2:23007379-23007398 | Msa0913080:intron | 40.0% | |
| !!! | TGGTTTGGTTTTTCGATGTG+TGG | + | chr6_2:23007517-23007536 | Msa0913080:intron | 40.0% |
| ATTAGAGTGGTTTCTGTGGA+TGG | + | chr6_2:23007713-23007732 | Msa0913080:intron | 40.0% | |
| TTAGAGTGGTTTCTGTGGAT+GGG | + | chr6_2:23007714-23007733 | Msa0913080:intron | 40.0% | |
| ! | CTTGATTGGGCATAAGCTTT+TGG | - | chr6_2:23008377-23008396 | None:intergenic | 40.0% |
| ACCAGGAGAAAGACTTGATT+GGG | - | chr6_2:23008390-23008409 | None:intergenic | 40.0% | |
| AACCAGGAGAAAGACTTGAT+TGG | - | chr6_2:23008391-23008410 | None:intergenic | 40.0% | |
| TGTTGAGTTAAGTATGCTGC+GGG | + | chr6_2:23009129-23009148 | Msa0913080:CDS | 40.0% | |
| TAATGGTCTACCAGATCTTG+AGG | + | chr6_2:23009647-23009666 | Msa0913080:intron | 40.0% | |
| GCGTGAATTTGTCAGTGAAA+TGG | - | chr6_2:23009718-23009737 | None:intergenic | 40.0% | |
| CTTGAAATTTGAGGGTGACA+GGG | - | chr6_2:23009881-23009900 | None:intergenic | 40.0% | |
| AGCTTCACATCAGATAAGGA+AGG | - | chr6_2:23009991-23010010 | None:intergenic | 40.0% | |
| ! | AGCTAGCTTCACATCAGATA+AGG | - | chr6_2:23009995-23010014 | None:intergenic | 40.0% |
| GTCAGCTAAATGCATGTGTT+CGG | + | chr6_2:23010388-23010407 | Msa0913080:intron | 40.0% | |
| CATAACTCTGCAACACACAA+AGG | - | chr6_2:23010754-23010773 | None:intergenic | 40.0% | |
| TTGACTACAAGGAGTTCTCA+AGG | + | chr6_2:23010789-23010808 | Msa0913080:CDS | 40.0% | |
| CTCTCTCTCCTCTACTTCTT+AGG | + | chr6_2:23006140-23006159 | Msa0913080:five_prime_UTR | 45.0% | |
| AAGCCATCACTTTCTGCATG+TGG | - | chr6_2:23006846-23006865 | None:intergenic | 45.0% | |
| AATTGGCCGACGAAAAGTGA+TGG | + | chr6_2:23007024-23007043 | Msa0913080:CDS | 45.0% | |
| GTGTATGTCGAAGAATGGAC+AGG | + | chr6_2:23007131-23007150 | Msa0913080:CDS | 45.0% | |
| TGAAGAGTTCATTCATGCCC+GGG | + | chr6_2:23007191-23007210 | Msa0913080:CDS | 45.0% | |
| !! | GCTTAGCTTTGAAAGGCTTC+TGG | + | chr6_2:23007950-23007969 | Msa0913080:intron | 45.0% |
| ! | AGCTTTTGGGCACATGACTT+GGG | - | chr6_2:23008363-23008382 | None:intergenic | 45.0% |
| ! | AAGCTTTTGGGCACATGACT+TGG | - | chr6_2:23008364-23008383 | None:intergenic | 45.0% |
| ACGAAGATATTTCAGGGTCG+CGG | - | chr6_2:23008876-23008895 | None:intergenic | 45.0% | |
| TCATATGCCTGGTGCAAAGA+AGG | + | chr6_2:23008930-23008949 | Msa0913080:CDS | 45.0% | |
| GTGCAAAGAAGGCTCAGATT+TGG | + | chr6_2:23008941-23008960 | Msa0913080:CDS | 45.0% | |
| CTCAGATTTGGCAGAGAATG+AGG | + | chr6_2:23008953-23008972 | Msa0913080:CDS | 45.0% | |
| ! | TTGGCAGAGAATGAGGTACT+AGG | + | chr6_2:23008960-23008979 | Msa0913080:intron | 45.0% |
| TCGCAAGGTCAAATGCAACT+GGG | - | chr6_2:23009462-23009481 | None:intergenic | 45.0% | |
| TTCGCAAGGTCAAATGCAAC+TGG | - | chr6_2:23009463-23009482 | None:intergenic | 45.0% | |
| GCTTGAAATTTGAGGGTGAC+AGG | - | chr6_2:23009882-23009901 | None:intergenic | 45.0% | |
| !! | GCTATTTTCAACCGTTTCCG+AGG | - | chr6_2:23010104-23010123 | None:intergenic | 45.0% |
| AAAGCCAAGTGATGCTGAAG+TGG | + | chr6_2:23010244-23010263 | Msa0913080:CDS | 45.0% | |
| TGATCCACTTCAGCATCACT+TGG | - | chr6_2:23010251-23010270 | None:intergenic | 45.0% | |
| GGATCAGTTAGCGAATCTTG+TGG | + | chr6_2:23010265-23010284 | Msa0913080:CDS | 45.0% | |
| !!! | ACCATCTATTTTGGGGCTTG+TGG | + | chr6_2:23010306-23010325 | Msa0913080:CDS | 45.0% |
| !!! | CCATCTATTTTGGGGCTTGT+GGG | + | chr6_2:23010307-23010326 | Msa0913080:CDS | 45.0% |
| !!! | CATCTATTTTGGGGCTTGTG+GGG | + | chr6_2:23010308-23010327 | Msa0913080:CDS | 45.0% |
| !!! | TTATGTTTTTTTTTTAAAAT+TGG | + | chr6_2:23006737-23006756 | Msa0913080:intron | 5.0% |
| !!! | TATGTTTTTTTTTTAAAATT+GGG | + | chr6_2:23006738-23006757 | Msa0913080:intron | 5.0% |
| !!! | AAAAAATAGAAAATATATTT+TGG | + | chr6_2:23007638-23007657 | Msa0913080:intron | 5.0% |
| GCAGCTGTGGCTGTAGATTT+AGG | + | chr6_2:23006925-23006944 | Msa0913080:CDS | 50.0% | |
| CAGTAGTGAACCGACCAAGA+AGG | - | chr6_2:23007164-23007183 | None:intergenic | 50.0% | |
| ! | CTTCTTGGTCGGTTCACTAC+TGG | + | chr6_2:23007162-23007181 | Msa0913080:CDS | 50.0% |
| CAGCATGGATCGCCTTCTAT+CGG | - | chr6_2:23007394-23007413 | None:intergenic | 50.0% | |
| GCCCAATCAAGTCTTTCTCC+TGG | + | chr6_2:23008386-23008405 | Msa0913080:intron | 50.0% | |
| ! | GTCTAGAGTCTGACAACGAC+TGG | - | chr6_2:23008758-23008777 | None:intergenic | 50.0% |
| AAGATATTTCAGGGTCGCGG+AGG | - | chr6_2:23008873-23008892 | None:intergenic | 50.0% | |
| ATCTGAGCCTTCTTTGCACC+AGG | - | chr6_2:23008940-23008959 | None:intergenic | 50.0% | |
| ! | TATGCTGCGGGCGTTGTTAT+CGG | + | chr6_2:23009141-23009160 | Msa0913080:CDS | 50.0% |
| GTCAAGAACATGAGGCGTGT+CGG | - | chr6_2:23009518-23009537 | None:intergenic | 50.0% | |
| CCCACAAGCCCCAAAATAGA+TGG | - | chr6_2:23010310-23010329 | None:intergenic | 50.0% | |
| ACAAGGAGTTCTCAAGGCAG+AGG | + | chr6_2:23010795-23010814 | Msa0913080:CDS | 50.0% | |
| CATGGATCGCCTTCTATCGG+AGG | - | chr6_2:23007391-23007410 | None:intergenic | 55.0% | |
| CTTCGACGCTCCTCAAGATC+TGG | - | chr6_2:23009660-23009679 | None:intergenic | 55.0% | |
| !! | CAGATCTTGAGGAGCGTCGA+AGG | + | chr6_2:23009658-23009677 | Msa0913080:intron | 55.0% |
| GTGAACCGACCAAGAAGGCG+CGG | - | chr6_2:23007159-23007178 | None:intergenic | 60.0% | |
| ! | GAACATGAGGCGTGTCGGTG+TGG | - | chr6_2:23009513-23009532 | None:intergenic | 60.0% |
| AGGGTCCGCGCCTTCTTGGT+CGG | + | chr6_2:23007151-23007170 | Msa0913080:CDS | 65.0% | |
| GGACAGGGTCCGCGCCTTCT+TGG | + | chr6_2:23007147-23007166 | Msa0913080:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 23006133 | 23011063 | 23006133 | ID=Msa0913080;Name=Msa0913080 |
| chr6_2 | mRNA | 23006133 | 23011063 | 23006133 | ID=Msa0913080-mRNA-1;Parent=Msa0913080;Name=Msa0913080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102|1|1|1|0.87|0.66|9|204|343 |
| chr6_2 | exon | 23006133 | 23006161 | 23006133 | ID=Msa0913080-mRNA-1:exon:4574;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23006306 | 23006372 | 23006306 | ID=Msa0913080-mRNA-1:exon:4575;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23006853 | 23007212 | 23006853 | ID=Msa0913080-mRNA-1:exon:4576;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23008853 | 23008974 | 23008853 | ID=Msa0913080-mRNA-1:exon:4577;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23009057 | 23009252 | 23009057 | ID=Msa0913080-mRNA-1:exon:4578;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23009436 | 23009553 | 23009436 | ID=Msa0913080-mRNA-1:exon:4579;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23009661 | 23009708 | 23009661 | ID=Msa0913080-mRNA-1:exon:4580;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23010240 | 23010340 | 23010240 | ID=Msa0913080-mRNA-1:exon:4581;Parent=Msa0913080-mRNA-1 |
| chr6_2 | exon | 23010767 | 23011063 | 23010767 | ID=Msa0913080-mRNA-1:exon:4582;Parent=Msa0913080-mRNA-1 |
| chr6_2 | five_prime_UTR | 23006133 | 23006161 | 23006133 | ID=Msa0913080-mRNA-1:five_prime_utr;Parent=Msa0913080-mRNA-1 |
| chr6_2 | five_prime_UTR | 23006306 | 23006372 | 23006306 | ID=Msa0913080-mRNA-1:five_prime_utr;Parent=Msa0913080-mRNA-1 |
| chr6_2 | five_prime_UTR | 23006853 | 23006858 | 23006853 | ID=Msa0913080-mRNA-1:five_prime_utr;Parent=Msa0913080-mRNA-1 |
| chr6_2 | CDS | 23006859 | 23007212 | 23006859 | ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1 |
| chr6_2 | CDS | 23008853 | 23008974 | 23008853 | ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1 |
| chr6_2 | CDS | 23009057 | 23009252 | 23009057 | ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1 |
| chr6_2 | CDS | 23009436 | 23009553 | 23009436 | ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1 |
| chr6_2 | CDS | 23009661 | 23009708 | 23009661 | ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1 |
| chr6_2 | CDS | 23010240 | 23010340 | 23010240 | ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1 |
| chr6_2 | CDS | 23010767 | 23010859 | 23010767 | ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1 |
| chr6_2 | three_prime_UTR | 23010860 | 23011063 | 23010860 | ID=Msa0913080-mRNA-1:three_prime_utr;Parent=Msa0913080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
