AlfalfaGEDB | Msa0913080

M. sativa cultivar zhongmu-4 / Msa0913080

KEGG: K14156
GO: GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01633.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0913080	XP_013451989.1	96.210	343	13	0	1	343	1	343	0.0	697

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0913080	sp\|Q8L518\|CK2_ARATH	63.914	327	117	1	17	343	20	345	6.29e-161	456

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007470	Msa0913080	0.800427	1.448435e-48	-8.615850e-47
Msa0049910	Msa0913080	0.805982	1.026192e-49	-8.615850e-47
Msa0056060	Msa0913080	0.806538	7.835008e-50	-8.615850e-47
Msa0064300	Msa0913080	0.803401	3.547579e-49	-8.615850e-47
Msa0299660	Msa0913080	0.826039	3.376163e-54	-8.615850e-47
Msa0885830	Msa0913080	0.846859	1.666812e-59	-8.615850e-47
Msa0913080	Msa0950330	0.866955	1.952266e-65	-8.615850e-47
Msa0913080	Msa1355890	0.810031	1.410911e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0913080	MtrunA17_Chr6g0466631	96.210	343	13	0	1	343	1	343	0.0	697
Msa0913080	MtrunA17_Chr1g0201341	77.193	342	78	0	1	342	1	342	0.0	575
Msa0913080	MtrunA17_Chr3g0081621	64.327	342	121	1	2	343	113	453	3.41e-169	480
Msa0913080	MtrunA17_Chr8g0354091	60.671	328	121	2	16	343	36	355	2.56e-151	430
Msa0913080	MtrunA17_Chr2g0307011	34.675	323	188	6	29	343	59	366	1.19e-56	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0913080	AT1G74320.1	63.914	327	117	1	17	343	20	345	6.40e-162	456
Msa0913080	AT4G09760.1	59.593	344	136	3	1	343	1	342	8.61e-160	451
Msa0913080	AT4G09760.2	59.593	344	136	3	1	343	1	342	8.61e-160	451
Msa0913080	AT1G71697.1	59.012	344	139	2	1	342	1	344	2.64e-156	442
Msa0913080	AT4G09760.3	56.000	225	96	3	1	224	1	223	1.91e-89	269
Msa0913080	AT4G09760.4	54.762	210	92	3	1	209	1	208	1.04e-80	245
Msa0913080	AT2G26830.1	36.422	313	181	5	35	339	58	360	9.11e-60	197

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Find 72 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGCAATGACAAATC+AGG	0.389457	6_2:+23006990	Msa0913080:CDS
AAAGCCAAGTGATGCTGAAG+TGG	0.528186	6_2:+23010244	Msa0913080:CDS
AAAGTGATGGTCATGTTAGA+AGG	0.403264	6_2:+23007037	Msa0913080:CDS
AAGACATTTGAATTGTTGAA+AGG	0.469355	6_2:+23006868	Msa0913080:CDS
AAGATATTTCAGGGTCGCGG+AGG	0.609947	6_2:-23008870	None:intergenic
AAGTGATGGTCATGTTAGAA+GGG	0.567355	6_2:+23007038	Msa0913080:CDS
AATCCCAAAATCCAAATGAA+AGG	0.521684	6_2:-23011011	None:intergenic
AATGAAAGTTCTTGCAGCTG+TGG	0.613557	6_2:+23006912	Msa0913080:CDS
AATTGGCCGACGAAAAGTGA+TGG	0.634847	6_2:+23007024	Msa0913080:CDS
ACAAGGAGTTCTCAAGGCAG+AGG	0.574763	6_2:+23010795	Msa0913080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTTCTCTTCTGCTTCAA+AGG	+	chr6_2:23006351-23006370	Msa0913080:five_prime_UTR	30.0%
ACACAGAAAATTGTTGCAAT+TGG	-	chr6_2:23006489-23006508	None:intergenic	30.0%
TCCATTAGTAATGTTTGGTT+TGG	+	chr6_2:23007502-23007521	Msa0913080:intron	30.0%
ACCAAACCAAACATTACTAA+TGG	-	chr6_2:23007506-23007525	None:intergenic	30.0%
CAATAGTGTTTGGTATTGTT+TGG	-	chr6_2:23008137-23008156	None:intergenic	30.0%
AGTTTCTGTCTATCAATATG+AGG	-	chr6_2:23008172-23008191	None:intergenic	30.0%
GATCTATTGTCATGTTATCA+TGG	-	chr6_2:23008519-23008538	None:intergenic	30.0%
AGAAAGAGACAAAGAAAAAC+AGG	+	chr6_2:23008567-23008586	Msa0913080:intron	30.0%
TTACCCTTAAGTAACTGAAA+AGG	-	chr6_2:23008678-23008697	None:intergenic	30.0%
CTATCAACGAAGATATTTCA+GGG	-	chr6_2:23008882-23008901	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	23006133	23011063	23006133	ID=Msa0913080;Name=Msa0913080
chr6_2	mRNA	23006133	23011063	23006133	ID=Msa0913080-mRNA-1;Parent=Msa0913080;Name=Msa0913080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102\|1\|1\|1\|0.87\|0.66\|9\|204\|343
chr6_2	exon	23006133	23006161	23006133	ID=Msa0913080-mRNA-1:exon:4574;Parent=Msa0913080-mRNA-1
chr6_2	exon	23006306	23006372	23006306	ID=Msa0913080-mRNA-1:exon:4575;Parent=Msa0913080-mRNA-1
chr6_2	exon	23006853	23007212	23006853	ID=Msa0913080-mRNA-1:exon:4576;Parent=Msa0913080-mRNA-1
chr6_2	exon	23008853	23008974	23008853	ID=Msa0913080-mRNA-1:exon:4577;Parent=Msa0913080-mRNA-1
chr6_2	exon	23009057	23009252	23009057	ID=Msa0913080-mRNA-1:exon:4578;Parent=Msa0913080-mRNA-1
chr6_2	exon	23009436	23009553	23009436	ID=Msa0913080-mRNA-1:exon:4579;Parent=Msa0913080-mRNA-1
chr6_2	exon	23009661	23009708	23009661	ID=Msa0913080-mRNA-1:exon:4580;Parent=Msa0913080-mRNA-1
chr6_2	exon	23010240	23010340	23010240	ID=Msa0913080-mRNA-1:exon:4581;Parent=Msa0913080-mRNA-1
chr6_2	exon	23010767	23011063	23010767	ID=Msa0913080-mRNA-1:exon:4582;Parent=Msa0913080-mRNA-1
chr6_2	five_prime_UTR	23006133	23006161	23006133	ID=Msa0913080-mRNA-1:five_prime_utr;Parent=Msa0913080-mRNA-1
chr6_2	five_prime_UTR	23006306	23006372	23006306	ID=Msa0913080-mRNA-1:five_prime_utr;Parent=Msa0913080-mRNA-1
chr6_2	five_prime_UTR	23006853	23006858	23006853	ID=Msa0913080-mRNA-1:five_prime_utr;Parent=Msa0913080-mRNA-1
chr6_2	CDS	23006859	23007212	23006859	ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1
chr6_2	CDS	23008853	23008974	23008853	ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1
chr6_2	CDS	23009057	23009252	23009057	ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1
chr6_2	CDS	23009436	23009553	23009436	ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1
chr6_2	CDS	23009661	23009708	23009661	ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1
chr6_2	CDS	23010240	23010340	23010240	ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1
chr6_2	CDS	23010767	23010859	23010767	ID=Msa0913080-mRNA-1:cds;Parent=Msa0913080-mRNA-1
chr6_2	three_prime_UTR	23010860	23011063	23010860	ID=Msa0913080-mRNA-1:three_prime_utr;Parent=Msa0913080-mRNA-1

Gene Sequence

>Msa0913080

ATGGCTTTAAAGACATTTGAATTGTTGAAAGGGTGTGAAACTCATGACGAGATAATGAAAGTTCTTGCAGCTGTGGCTGTAGATTTAGGTGATGTAATTGATGATGTGAGTACTGTTGAGGTGAATCCCTTAAAAGGTGCAATGACAAATCAGGTTTTTGAGGTGAATTGGCCGACGAAAAGTGATGGTCATGTTAGAAGGGTTTTGGTTCGATTATATGGCGAAGGAGTTGAGGTTTTCTTCGATAGGGATGATGAAATCCAAACATTTGAGTGTATGTCGAAGAATGGACAGGGTCCGCGCCTTCTTGGTCGGTTCACTACTGGTCGAGTTGAAGAGTTCATTCATGCCCGGACACTTTCAGCTTCTGACCTCCGCGACCCTGAAATATCTTCGTTGATAGCATCGAAGATGAAAGAATTTCACAATCTTCATATGCCTGGTGCAAAGAAGGCTCAGATTTGGCAGAGAATGAGGAAATGGCTTAATCATGCTAAAAGTTTATGCTCGCAAAAGGATATAAAGAATTTTGGCTTGGAGAATCTAGATGTTGAGTTAAGTATGCTGCGGGCGTTGTTATCGGAAGAAAATCAAGAGATTGGTTTTTGTCACAATGATCTACAATATGGTAACATCATGATGGATGAAGAAACAAGATCAATCACTTTAATTGACTACGAGTACTCGAGTTACAACCCAGTTGCATTTGACCTTGCGAATCATTTCTGTGAAATGGCGGCAAATTACCACACCGACACGCCTCATGTTCTTGACTACAGTAAATATCCCGATCTTGAGGAGCGTCGAAGGTTTATTTATACATACTTGAGTTCTGAAGGAAAAAAGCCAAGTGATGCTGAAGTGGATCAGTTAGCGAATCTTGTGGAGAAGTACACTCTTGCAAACCATCTATTTTGGGGCTTGTGGGGACTTATTTCAAGTTATGTCAATACAATTGACTTTGACTACAAGGAGTTCTCAAGGCAGAGGTTTAAGCAATACCAGTTAAAGAAGCCTACTTTATTGGCATAA

Protein sequence

>Msa0913080

MALKTFELLKGCETHDEIMKVLAAVAVDLGDVIDDVSTVEVNPLKGAMTNQVFEVNWPTKSDGHVRRVLVRLYGEGVEVFFDRDDEIQTFECMSKNGQGPRLLGRFTTGRVEEFIHARTLSASDLRDPEISSLIASKMKEFHNLHMPGAKKAQIWQRMRKWLNHAKSLCSQKDIKNFGLENLDVELSMLRALLSEENQEIGFCHNDLQYGNIMMDEETRSITLIDYEYSSYNPVAFDLANHFCEMAANYHTDTPHVLDYSKYPDLEERRRFIYTYLSSEGKKPSDAEVDQLANLVEKYTLANHLFWGLWGLISSYVNTIDFDYKEFSRQRFKQYQLKKPTLLA*