AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169820 MtrunA17_Chr1g0186811 98.428 318 5 0 1 318 1 318 0.0 655
Msa0169820 MtrunA17_Chr1g0190121 82.445 319 55 1 1 318 1 319 0.0 569
Msa0169820 MtrunA17_Chr1g0167751 84.984 313 46 1 1 312 1 313 0.0 569
Msa0169820 MtrunA17_Chr7g0274931 83.386 319 52 1 1 318 1 319 0.0 567
Msa0169820 MtrunA17_Chr5g0436061 81.788 302 54 1 1 301 17 318 0.0 528
Msa0169820 MtrunA17_Chr8g0387541 74.448 317 80 1 1 316 1 317 0.0 515
Msa0169820 MtrunA17_Chr8g0334361 77.586 290 65 0 6 295 4 293 4.70e-178 495
Msa0169820 MtrunA17_Chr7g0272371 74.026 308 74 2 1 308 5 306 1.03e-173 484
Msa0169820 MtrunA17_Chr5g0445011 46.758 293 150 3 26 317 17 304 1.67e-94 283
Msa0169820 MtrunA17_Chr7g0268381 48.175 274 140 2 26 298 27 299 2.55e-94 283
Msa0169820 MtrunA17_Chr8g0364041 48.175 274 140 2 26 298 20 292 9.33e-93 279
Msa0169820 MtrunA17_Chr8g0378521 45.455 297 153 3 3 298 6 294 2.62e-92 278
Msa0169820 MtrunA17_Chr5g0415261 48.175 274 140 2 26 298 20 292 2.02e-91 275
Msa0169820 MtrunA17_Chr1g0165341 45.247 263 141 3 25 285 15 276 1.80e-89 270
Msa0169820 MtrunA17_Chr2g0322121 47.003 317 147 9 9 307 644 957 3.06e-82 269
Msa0169820 MtrunA17_Chr4g0025471 47.869 305 140 8 9 295 649 952 3.90e-82 268
Msa0169820 MtrunA17_Chr3g0097231 45.059 253 132 4 33 279 195 446 6.57e-73 233
Msa0169820 MtrunA17_Chr2g0330311 42.642 265 143 6 22 279 211 473 1.40e-66 218
Msa0169820 MtrunA17_Chr2g0330331 42.520 254 138 5 33 279 60 312 1.91e-61 200
Msa0169820 MtrunA17_Chr1g0196211 47.449 196 95 4 108 295 2 197 2.39e-51 171
Msa0169820 MtrunA17_Chr8g0369981 31.746 315 148 10 33 281 100 413 1.33e-38 142
Msa0169820 MtrunA17_Chr1g0196221 46.491 114 52 2 3 107 522 635 5.19e-24 103
Msa0169820 MtrunA17_Chr2g0330011 36.134 119 66 4 31 140 232 349 8.38e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169820 AT2G39840.1 79.739 306 61 1 1 305 14 319 0.0 530
Msa0169820 AT5G43380.1 77.707 314 70 0 1 314 1 314 0.0 526
Msa0169820 AT5G43380.2 77.707 314 70 0 1 314 1 314 0.0 524
Msa0169820 AT5G43380.3 77.707 314 70 0 1 314 1 314 0.0 523
Msa0169820 AT1G64040.1 75.466 322 78 1 1 321 1 322 0.0 523
Msa0169820 AT2G29400.1 80.592 304 55 3 1 301 15 317 0.0 521
Msa0169820 AT5G59160.3 79.208 303 61 2 1 301 9 311 0.0 518
Msa0169820 AT5G59160.2 79.208 303 61 2 1 301 9 311 0.0 518
Msa0169820 AT5G59160.1 79.208 303 61 2 1 301 9 311 0.0 518
Msa0169820 AT3G46820.1 77.228 303 67 1 1 301 9 311 0.0 508
Msa0169820 AT4G11240.1 71.609 317 89 1 1 316 1 317 7.17e-179 498
Msa0169820 AT5G27840.4 76.190 294 68 1 1 294 9 300 1.99e-174 487
Msa0169820 AT5G27840.1 76.190 294 68 1 1 294 9 300 2.02e-174 487
Msa0169820 AT5G27840.2 76.190 294 68 1 1 294 9 300 2.25e-174 487
Msa0169820 AT5G27840.3 76.190 294 68 1 1 294 9 300 2.25e-174 487
Msa0169820 AT3G05580.1 76.190 294 68 1 1 294 9 300 4.33e-172 481
Msa0169820 AT3G05580.2 75.203 246 59 1 1 246 9 252 1.63e-139 396
Msa0169820 AT5G55260.1 47.099 293 149 3 26 317 17 304 8.71e-97 289
Msa0169820 AT2G42500.1 48.540 274 139 2 26 298 27 299 1.62e-95 286
Msa0169820 AT3G58500.1 47.810 274 141 2 26 298 27 299 6.91e-94 282
Msa0169820 AT1G69960.1 46.284 296 150 3 4 298 6 293 4.30e-93 280
Msa0169820 AT4G26720.1 45.230 283 146 2 26 299 17 299 7.01e-93 279
Msa0169820 AT1G10430.2 45.608 296 152 3 4 298 5 292 6.57e-92 277
Msa0169820 AT1G10430.1 45.608 296 152 3 4 298 5 292 6.57e-92 277
Msa0169820 AT1G59830.1 46.284 296 150 3 4 298 5 292 1.00e-91 276
Msa0169820 AT3G19980.1 45.247 263 141 3 25 285 15 276 4.76e-89 270
Msa0169820 AT1G50370.1 44.867 263 142 3 25 285 15 276 7.35e-89 269
Msa0169820 AT5G55260.2 41.317 334 149 4 26 317 17 345 2.86e-88 269
Msa0169820 AT4G03080.1 44.476 353 166 11 3 336 524 865 5.27e-84 272
Msa0169820 AT1G59830.2 49.004 251 119 3 4 253 5 247 9.32e-81 247
Msa0169820 AT2G27210.1 47.213 305 142 8 9 295 655 958 1.19e-80 265
Msa0169820 AT2G27210.2 47.213 305 142 8 9 295 650 953 1.74e-80 265
Msa0169820 AT1G08420.1 46.372 317 149 9 9 307 666 979 5.70e-80 263
Msa0169820 AT1G08420.2 46.372 317 149 9 9 307 661 974 5.99e-80 263
Msa0169820 AT1G03445.2 46.831 284 134 7 26 294 476 757 2.23e-79 258
Msa0169820 AT1G03445.1 46.831 284 134 7 26 294 476 757 2.64e-79 258
Msa0169820 AT2G42500.2 49.321 221 110 2 79 298 33 252 4.40e-75 233
Msa0169820 AT2G42810.1 44.664 253 133 4 33 279 197 448 4.41e-70 226
Msa0169820 AT2G42810.5 44.664 253 133 4 33 279 197 448 4.41e-70 226
Msa0169820 AT2G42810.4 44.664 253 133 4 33 279 197 448 4.41e-70 226
Msa0169820 AT2G42810.3 44.664 253 133 4 33 279 250 501 9.51e-70 227
Msa0169820 AT2G42810.2 44.664 253 133 4 33 279 251 502 1.07e-69 227
Msa0169820 AT2G42500.4 48.299 147 72 3 26 168 27 173 3.91e-44 150
Msa0169820 AT2G42500.5 47.403 154 75 4 26 175 27 178 1.13e-43 149
Msa0169820 AT2G42500.3 50.360 139 65 3 26 160 27 165 1.69e-43 148
Msa0169820 AT5G63870.1 30.473 338 168 11 33 303 52 389 7.30e-36 134
Msa0169820 AT5G63870.2 30.473 338 168 11 33 303 52 389 7.30e-36 134
Msa0169820 AT1G48120.1 29.412 340 168 9 31 300 628 965 4.47e-30 121
Msa0169820 AT5G63870.3 31.837 245 127 6 33 237 52 296 5.03e-29 114
Msa0169820 AT5G10900.2 33.023 215 120 8 52 245 222 433 1.81e-22 99.0
Msa0169820 AT5G10900.3 33.491 212 117 8 55 245 225 433 2.32e-22 98.6
Msa0169820 AT5G10900.1 33.491 212 117 8 55 245 225 433 2.50e-22 98.6

Find 65 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTCTCCACAGTAATT+AGG 0.241896 1_4:-53271127 None:intergenic
GTCTATTATGTGACCTCTTA+TGG 0.268848 1_4:+53270815 Msa0169820:CDS
AAATCCGTAGATACGGTTTA+TGG 0.280200 1_4:-53270605 None:intergenic
TGGAATTGAAATGATATTAT+AGG 0.280616 1_4:-53269071 None:intergenic
AATATACCACAGATCTTAAT+AGG 0.298021 1_4:-53269426 None:intergenic
TGATTTAAATCGTGTAATTC+AGG 0.302882 1_4:-53270751 None:intergenic
TAGAAAACAAATTAGAAATA+TGG 0.306123 1_4:+53269248 Msa0169820:exon
ATGATCTTGATTTGATTTGC+AGG 0.337705 1_4:+53270935 Msa0169820:CDS
AAAAGAGGAGAGAAGAATAA+AGG 0.348037 1_4:-53269037 None:intergenic
GGAATTGAAATGATATTATA+GGG 0.356697 1_4:-53269070 None:intergenic
CCGTGTGAAGTTCCTGAATC+TGG 0.374187 1_4:+53270793 Msa0169820:CDS
CGTGGAGTTTCATATACATT+TGG 0.381055 1_4:+53270880 Msa0169820:CDS
TAGTAGTGATGTTCGTGGTT+GGG 0.384770 1_4:+53270846 Msa0169820:CDS
AGAAACAATATGTCTTCTTC+TGG 0.391096 1_4:+53270522 Msa0169820:CDS
TTTGATTTGCAGGGCTCATC+AGG 0.392866 1_4:+53270945 Msa0169820:CDS
ATTCGTGGTTACCCCTTAGA+AGG 0.394389 1_4:-53270576 None:intergenic
ATGTTACCAGGAGATATTCA+TGG 0.394694 1_4:+53270397 Msa0169820:intron
TTGAGATGAATGGGCTTGTA+AGG 0.394976 1_4:-53272151 None:intergenic
TTGTTGATGGTATTATCAAT+AGG 0.402079 1_4:+53269280 Msa0169820:CDS
GCTTCTAGTTTCAAGAGATT+AGG 0.427307 1_4:-53269402 None:intergenic
TCACATAATAGACCAGATTC+AGG 0.431932 1_4:-53270805 None:intergenic
GACTAGCTATTGAGATGAAT+GGG 0.440946 1_4:-53272160 None:intergenic
GAAAGCTGAACCTGCTTCCC+TGG 0.443268 1_4:-53269324 None:intergenic
AGTAGTGATGTTCGTGGTTG+GGG 0.445269 1_4:+53270847 Msa0169820:CDS
TATATTCGAATGAATTCAAA+TGG 0.447104 1_4:-53269109 None:intergenic
ATGGAACGTGGAGTTGTTGA+TGG 0.454585 1_4:+53269267 Msa0169820:CDS
AAGAGGTAGACCAGGGAAGC+AGG 0.459465 1_4:+53269314 Msa0169820:CDS
AGACTAGCTATTGAGATGAA+TGG 0.483820 1_4:-53272161 None:intergenic
GGAGATACAATGTGAAGCTA+TGG 0.485510 1_4:+53270644 Msa0169820:CDS
CAACCACGAACATCACTACT+AGG 0.486128 1_4:-53270844 None:intergenic
TAGTAGTCCAACAAAATTCA+AGG 0.492608 1_4:+53271264 Msa0169820:CDS
AAGAAACTCTTTAACCCTAT+CGG 0.496948 1_4:-53270905 None:intergenic
CTAGTAGTGATGTTCGTGGT+TGG 0.504572 1_4:+53270845 Msa0169820:CDS
AAAGCTTATAAGAAGAGTAG+TGG 0.505031 1_4:-53269142 None:intergenic
TACTAGGATCAGACCATAAG+AGG 0.507611 1_4:-53270828 None:intergenic
TGATCTTGATTTGATTTGCA+GGG 0.513485 1_4:+53270936 Msa0169820:CDS
AATAGGTTACTTGAAGTAAG+AGG 0.517432 1_4:+53269297 Msa0169820:CDS
GTCAATATTCCGACCTTCTG+AGG 0.518139 1_4:+53270419 Msa0169820:CDS
AGGGCACGGGTGAACAAGCT+TGG 0.520779 1_4:+53272097 Msa0169820:intron
ATATACATTTGGTGCCGATA+GGG 0.527545 1_4:+53270891 Msa0169820:CDS
CATCATAAAATCCGTAGATA+CGG 0.530362 1_4:-53270612 None:intergenic
CTTGAAGTAAGAGGTAGACC+AGG 0.531943 1_4:+53269306 Msa0169820:CDS
CATATACATTTGGTGCCGAT+AGG 0.532156 1_4:+53270890 Msa0169820:CDS
TTGTTGCAGGTTGTGGAAGA+CGG 0.543349 1_4:+53271058 Msa0169820:intron
GTGCTTCCAAAGCTAAACTT+AGG 0.544982 1_4:-53271226 None:intergenic
ATAAAGGTGACGATGATACA+TGG 0.545149 1_4:-53269021 None:intergenic
CTCGAAAAGCCTCAGAAGGT+CGG 0.552388 1_4:-53270428 None:intergenic
GGTTTATGGAAGCACATTCG+TGG 0.557667 1_4:-53270591 None:intergenic
CTAGTTTCAAGAGATTAGGT+TGG 0.567064 1_4:-53269398 None:intergenic
TGTGGAGAATTTGACAATGC+TGG 0.567360 1_4:+53271136 Msa0169820:CDS
TTTCAATTGTTTGCCTGTGG+CGG 0.574441 1_4:+53270684 Msa0169820:CDS
GCTTCCATAAACCGTATCTA+CGG 0.579276 1_4:+53270601 Msa0169820:CDS
GATCCTAGTAGTGATGTTCG+TGG 0.596697 1_4:+53270841 Msa0169820:CDS
TCATCAATGAGAGCCGCCAC+AGG 0.602243 1_4:-53270697 None:intergenic
GGTTGGGGAGAAAGCGAGCG+TGG 0.603320 1_4:+53270862 Msa0169820:CDS
TTGTTTCAATTGTTTGCCTG+TGG 0.606705 1_4:+53270681 Msa0169820:CDS
GAAAAGATTATCTGTATGCA+TGG 0.619510 1_4:+53270718 Msa0169820:CDS
CAAATTAGAAATATGGAACG+TGG 0.634209 1_4:+53269255 Msa0169820:exon
AATAAATAATTCGAGCGAGG+AGG 0.639135 1_4:-53270463 None:intergenic
CCAGATTCAGGAACTTCACA+CGG 0.648649 1_4:-53270793 None:intergenic
GAAGCACCTATTAAGATCTG+TGG 0.649585 1_4:+53269420 Msa0169820:CDS
CGTACTCGAAAAGCCTCAGA+AGG 0.657790 1_4:-53270432 None:intergenic
TTAGGAGACTATGTTGATCG+CGG 0.661259 1_4:+53270487 Msa0169820:CDS
TTGAAGTAAGAGGTAGACCA+GGG 0.670591 1_4:+53269307 Msa0169820:CDS
AAGATTATCTGTATGCATGG+TGG 0.720136 1_4:+53270721 Msa0169820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCTAATTTGTTTTCTA+AGG - chr1_4:53269248-53269267 None:intergenic 15.0%
!! TAGAAAACAAATTAGAAATA+TGG + chr1_4:53269248-53269267 Msa0169820:exon 15.0%
!!! TTGATTGATTTAATTAGTAT+AGG + chr1_4:53269481-53269500 Msa0169820:intron 15.0%
!!! CTTTTCATACAAATTATATA+TGG + chr1_4:53269705-53269724 Msa0169820:intron 15.0%
!!! TAGTATTTTTTATACTTGTT+AGG + chr1_4:53269865-53269884 Msa0169820:intron 15.0%
!! TTATGTATAAACTTAGAATT+TGG - chr1_4:53271014-53271033 None:intergenic 15.0%
!! TTCTAAGTTTATACATAATA+AGG + chr1_4:53271016-53271035 Msa0169820:intron 15.0%
!! TAAATATTTCTTTCTTATGA+TGG + chr1_4:53271695-53271714 Msa0169820:intron 15.0%
!! GGAATTGAAATGATATTATA+GGG - chr1_4:53269073-53269092 None:intergenic 20.0%
!! TGGAATTGAAATGATATTAT+AGG - chr1_4:53269074-53269093 None:intergenic 20.0%
!! TATATTCGAATGAATTCAAA+TGG - chr1_4:53269112-53269131 None:intergenic 20.0%
!! AAAAAAATTATACATGGTCT+AGG + chr1_4:53269739-53269758 Msa0169820:intron 20.0%
!! AAAAAATTATACATGGTCTA+GGG + chr1_4:53269740-53269759 Msa0169820:intron 20.0%
!! TGAAACAAGAATGAATAATT+AGG - chr1_4:53270214-53270233 None:intergenic 20.0%
!!! TAAAAACTTTTTCCTTCTAA+GGG + chr1_4:53270564-53270583 Msa0169820:CDS 20.0%
!!! GATTTTATGATGAATGTAAA+AGG + chr1_4:53270623-53270642 Msa0169820:CDS 20.0%
!!! TTGTTGATGGTATTATCAAT+AGG + chr1_4:53269280-53269299 Msa0169820:CDS 25.0%
! AATATACCACAGATCTTAAT+AGG - chr1_4:53269429-53269448 None:intergenic 25.0%
!!! AGGATTTAATTTGTATACGT+CGG + chr1_4:53269501-53269520 Msa0169820:intron 25.0%
! AAACCTTTACACTTTATTGA+CGG - chr1_4:53269541-53269560 None:intergenic 25.0%
!!! TCATCGTAACAAGTTTTATA+CGG - chr1_4:53269645-53269664 None:intergenic 25.0%
! CATCAGTTTAATTAGAATTG+TGG - chr1_4:53270169-53270188 None:intergenic 25.0%
! CAATTCTAATTAAACTGATG+TGG + chr1_4:53270169-53270188 Msa0169820:intron 25.0%
! ATAAGTGTGAAACTAAACAT+AGG + chr1_4:53270290-53270309 Msa0169820:intron 25.0%
! AGGTTAAATATGTTTGATCA+CGG - chr1_4:53270327-53270346 None:intergenic 25.0%
! TTTCATTTCTTTATGTTACC+AGG + chr1_4:53270385-53270404 Msa0169820:intron 25.0%
! AAAAATAAATAATTCGAGCG+AGG - chr1_4:53270469-53270488 None:intergenic 25.0%
!!! CGCTCGAATTATTTATTTTT+AGG + chr1_4:53270469-53270488 Msa0169820:CDS 25.0%
!! CTTAGAAGGAAAAAGTTTTT+AGG - chr1_4:53270565-53270584 None:intergenic 25.0%
!!! CTAAAAACTTTTTCCTTCTA+AGG + chr1_4:53270563-53270582 Msa0169820:CDS 25.0%
!!! AAAAACTTTTTCCTTCTAAG+GGG + chr1_4:53270565-53270584 Msa0169820:CDS 25.0%
! TGATTTAAATCGTGTAATTC+AGG - chr1_4:53270754-53270773 None:intergenic 25.0%
!! TGTAATTTTCTTTTTGTTGC+AGG + chr1_4:53271045-53271064 Msa0169820:intron 25.0%
!! CAAAATACCTTGAATTTTGT+TGG - chr1_4:53271274-53271293 None:intergenic 25.0%
! GTTTGAATATGTAATCTCAA+GGG - chr1_4:53271402-53271421 None:intergenic 25.0%
! AGTTTGAATATGTAATCTCA+AGG - chr1_4:53271403-53271422 None:intergenic 25.0%
!! GATATGTAATGTTTGAAATG+TGG + chr1_4:53271594-53271613 Msa0169820:intron 25.0%
!!! GTGTCATTTTTCTTTTCTTT+TGG + chr1_4:53271766-53271785 Msa0169820:intron 25.0%
! AGATGCATCTATCATATTAT+TGG + chr1_4:53271906-53271925 Msa0169820:intron 25.0%
AAAAGAGGAGAGAAGAATAA+AGG - chr1_4:53269040-53269059 None:intergenic 30.0%
TCAAATGGAAAAAGAGAAGA+TGG - chr1_4:53269097-53269116 None:intergenic 30.0%
AAAGCTTATAAGAAGAGTAG+TGG - chr1_4:53269145-53269164 None:intergenic 30.0%
CAAATTAGAAATATGGAACG+TGG + chr1_4:53269255-53269274 Msa0169820:exon 30.0%
AATAGGTTACTTGAAGTAAG+AGG + chr1_4:53269297-53269316 Msa0169820:CDS 30.0%
! TAATTTGTATACGTCGGTAA+AGG + chr1_4:53269507-53269526 Msa0169820:intron 30.0%
AAATATGCAATGACATCACT+TGG - chr1_4:53269942-53269961 None:intergenic 30.0%
CTTTATAGTTTAGCGAATCA+CGG - chr1_4:53270004-53270023 None:intergenic 30.0%
! ACTGTTGTTGTTATAGAAGT+AGG + chr1_4:53270060-53270079 Msa0169820:intron 30.0%
! CTGTTGTTGTTATAGAAGTA+GGG + chr1_4:53270061-53270080 Msa0169820:intron 30.0%
! ATTTTCTATCTGTGAAAACG+CGG + chr1_4:53270266-53270285 Msa0169820:intron 30.0%
ATGAAACAAGACATTAGCAT+AGG - chr1_4:53270371-53270390 None:intergenic 30.0%
AGAAACAATATGTCTTCTTC+TGG + chr1_4:53270522-53270541 Msa0169820:CDS 30.0%
CATCATAAAATCCGTAGATA+CGG - chr1_4:53270615-53270634 None:intergenic 30.0%
GAAAAGATTATCTGTATGCA+TGG + chr1_4:53270718-53270737 Msa0169820:CDS 30.0%
AAGAAACTCTTTAACCCTAT+CGG - chr1_4:53270908-53270927 None:intergenic 30.0%
!! ATGATCTTGATTTGATTTGC+AGG + chr1_4:53270935-53270954 Msa0169820:CDS 30.0%
!! TGATCTTGATTTGATTTGCA+GGG + chr1_4:53270936-53270955 Msa0169820:CDS 30.0%
TCAAATTCTCCACAGTAATT+AGG - chr1_4:53271130-53271149 None:intergenic 30.0%
! AACTTAGGCTTTTTATCAAG+AGG - chr1_4:53271214-53271233 None:intergenic 30.0%
! AAAAAGCCTAAGTTTAGCTT+TGG + chr1_4:53271220-53271239 Msa0169820:CDS 30.0%
TAGTAGTCCAACAAAATTCA+AGG + chr1_4:53271264-53271283 Msa0169820:CDS 30.0%
GTATATATCAGTTGTTCATG+AGG - chr1_4:53271473-53271492 None:intergenic 30.0%
ATATTGTCAAACGCAATTGA+AGG + chr1_4:53271737-53271756 Msa0169820:intron 30.0%
GCATTATTGAATCTAGAAAC+AGG - chr1_4:53271873-53271892 None:intergenic 30.0%
! AGTTCGTTGAAATTTTCGTA+AGG - chr1_4:53271951-53271970 None:intergenic 30.0%
ATAAAGGTGACGATGATACA+TGG - chr1_4:53269024-53269043 None:intergenic 35.0%
TAGGGAAAGAGAAGAAAAAG+AGG - chr1_4:53269055-53269074 None:intergenic 35.0%
AATGGAAAAAGAGAAGATGG+TGG - chr1_4:53269094-53269113 None:intergenic 35.0%
CTAGTTTCAAGAGATTAGGT+TGG - chr1_4:53269401-53269420 None:intergenic 35.0%
!! GCTTCTAGTTTCAAGAGATT+AGG - chr1_4:53269405-53269424 None:intergenic 35.0%
ATGCCGTCAATAAAGTGTAA+AGG + chr1_4:53269535-53269554 Msa0169820:intron 35.0%
AAATTATACATGGTCTAGGG+CGG + chr1_4:53269743-53269762 Msa0169820:intron 35.0%
! TACTTGTTAGGATTCGAAGT+TGG + chr1_4:53269877-53269896 Msa0169820:intron 35.0%
! ACTTGTTAGGATTCGAAGTT+GGG + chr1_4:53269878-53269897 Msa0169820:intron 35.0%
!! CTAAGGGATTAAAGGTGTTA+AGG - chr1_4:53269914-53269933 None:intergenic 35.0%
TGGTTAAGCTAAGGGATTAA+AGG - chr1_4:53269922-53269941 None:intergenic 35.0%
ACATCACTTGGTTAAGCTAA+GGG - chr1_4:53269930-53269949 None:intergenic 35.0%
CAATTGTGAGCGCAATATAA+AGG - chr1_4:53269971-53269990 None:intergenic 35.0%
TTGTTATAGAAGTAGGGAGT+AGG + chr1_4:53270067-53270086 Msa0169820:intron 35.0%
TGTTATAGAAGTAGGGAGTA+GGG + chr1_4:53270068-53270087 Msa0169820:intron 35.0%
!!! ACTCTGAAAGCTCTGTTTTT+TGG + chr1_4:53270107-53270126 Msa0169820:intron 35.0%
!!! TGAAAGCTCTGTTTTTTGGT+TGG + chr1_4:53270111-53270130 Msa0169820:intron 35.0%
AGCATATATCAGACCCTTTA+TGG + chr1_4:53270140-53270159 Msa0169820:intron 35.0%
AGAATTGTGGAGTCCATAAA+GGG - chr1_4:53270156-53270175 None:intergenic 35.0%
TAGAATTGTGGAGTCCATAA+AGG - chr1_4:53270157-53270176 None:intergenic 35.0%
AGTGTGAAACTAAACATAGG+TGG + chr1_4:53270293-53270312 Msa0169820:intron 35.0%
CACAACAGTAATACATGTCA+AGG - chr1_4:53270347-53270366 None:intergenic 35.0%
CTTGACATGTATTACTGTTG+TGG + chr1_4:53270345-53270364 Msa0169820:intron 35.0%
ATGTTACCAGGAGATATTCA+TGG + chr1_4:53270397-53270416 Msa0169820:intron 35.0%
TATTGACCATGAATATCTCC+TGG - chr1_4:53270406-53270425 None:intergenic 35.0%
AATAAATAATTCGAGCGAGG+AGG - chr1_4:53270466-53270485 None:intergenic 35.0%
AAATCCGTAGATACGGTTTA+TGG - chr1_4:53270608-53270627 None:intergenic 35.0%
TTGTTTCAATTGTTTGCCTG+TGG + chr1_4:53270681-53270700 Msa0169820:CDS 35.0%
AAGATTATCTGTATGCATGG+TGG + chr1_4:53270721-53270740 Msa0169820:CDS 35.0%
TCACATAATAGACCAGATTC+AGG - chr1_4:53270808-53270827 None:intergenic 35.0%
GTCTATTATGTGACCTCTTA+TGG + chr1_4:53270815-53270834 Msa0169820:CDS 35.0%
CGTGGAGTTTCATATACATT+TGG + chr1_4:53270880-53270899 Msa0169820:CDS 35.0%
!! ATATACATTTGGTGCCGATA+GGG + chr1_4:53270891-53270910 Msa0169820:CDS 35.0%
! TTTCTTTTTGTTGCAGGTTG+TGG + chr1_4:53271051-53271070 Msa0169820:intron 35.0%
! TTTTCAGCACCTAATTACTG+TGG + chr1_4:53271118-53271137 Msa0169820:CDS 35.0%
TACACGGGAAAGTTGTAAAA+TGG - chr1_4:53271364-53271383 None:intergenic 35.0%
! ATTTTACAACTTTCCCGTGT+AGG + chr1_4:53271363-53271382 Msa0169820:intron 35.0%
GAATATGTAATCTCAAGGGA+CGG - chr1_4:53271398-53271417 None:intergenic 35.0%
! CAAAAAATGCTTGCTGAAAG+TGG - chr1_4:53271542-53271561 None:intergenic 35.0%
!!! CACTTTCAGCAAGCATTTTT+TGG + chr1_4:53271540-53271559 Msa0169820:intron 35.0%
AATATTTAGCTGTCCCTGAA+GGG - chr1_4:53271683-53271702 None:intergenic 35.0%
AAATATTTAGCTGTCCCTGA+AGG - chr1_4:53271684-53271703 None:intergenic 35.0%
GCGTTTGACAATATTGTACA+AGG - chr1_4:53271731-53271750 None:intergenic 35.0%
ACATCAGTTAACTACCGTTA+GGG - chr1_4:53272025-53272044 None:intergenic 35.0%
AACATCAGTTAACTACCGTT+AGG - chr1_4:53272026-53272045 None:intergenic 35.0%
!!! CATTCGCAAAGAGCATTTTT+TGG - chr1_4:53272055-53272074 None:intergenic 35.0%
CAAAAAATGCTCTTTGCGAA+TGG + chr1_4:53272053-53272072 Msa0169820:intron 35.0%
TTGAAGTAAGAGGTAGACCA+GGG + chr1_4:53269307-53269326 Msa0169820:CDS 40.0%
! GAAGCACCTATTAAGATCTG+TGG + chr1_4:53269420-53269439 Msa0169820:CDS 40.0%
!! AGGGATTAAAGGTGTTAAGG+AGG - chr1_4:53269911-53269930 None:intergenic 40.0%
GACATCACTTGGTTAAGCTA+AGG - chr1_4:53269931-53269950 None:intergenic 40.0%
!!! AGCTCTGTTTTTTGGTTGGT+AGG + chr1_4:53270115-53270134 Msa0169820:intron 40.0%
TTAGGAGACTATGTTGATCG+CGG + chr1_4:53270487-53270506 Msa0169820:CDS 40.0%
GCTTCCATAAACCGTATCTA+CGG + chr1_4:53270601-53270620 Msa0169820:CDS 40.0%
GGAGATACAATGTGAAGCTA+TGG + chr1_4:53270644-53270663 Msa0169820:CDS 40.0%
TTTCAATTGTTTGCCTGTGG+CGG + chr1_4:53270684-53270703 Msa0169820:CDS 40.0%
TACTAGGATCAGACCATAAG+AGG - chr1_4:53270831-53270850 None:intergenic 40.0%
TAGTAGTGATGTTCGTGGTT+GGG + chr1_4:53270846-53270865 Msa0169820:CDS 40.0%
!! CATATACATTTGGTGCCGAT+AGG + chr1_4:53270890-53270909 Msa0169820:CDS 40.0%
TGTGGAGAATTTGACAATGC+TGG + chr1_4:53271136-53271155 Msa0169820:CDS 40.0%
GTGCTTCCAAAGCTAAACTT+AGG - chr1_4:53271229-53271248 None:intergenic 40.0%
TGAATACACAACTTGCACTG+AGG + chr1_4:53271300-53271319 Msa0169820:intron 40.0%
! AAAATGCTTGCTGAAAGTGG+AGG - chr1_4:53271539-53271558 None:intergenic 40.0%
!! TTTGGTGCTAAAGCATGACA+TGG + chr1_4:53271558-53271577 Msa0169820:intron 40.0%
! GTTTGAAATGTGGCCAAAGT+TGG + chr1_4:53271604-53271623 Msa0169820:intron 40.0%
CTTTCTTTCCAAGCCAACTT+TGG - chr1_4:53271620-53271639 None:intergenic 40.0%
AATCTCTGCTTTACCCTTCA+GGG + chr1_4:53271667-53271686 Msa0169820:intron 40.0%
ATTGCTCTCTAACACCCTAA+CGG + chr1_4:53272008-53272027 Msa0169820:intron 40.0%
! TTGAGATGAATGGGCTTGTA+AGG - chr1_4:53272154-53272173 None:intergenic 40.0%
ATGGAACGTGGAGTTGTTGA+TGG + chr1_4:53269267-53269286 Msa0169820:CDS 45.0%
CTTGAAGTAAGAGGTAGACC+AGG + chr1_4:53269306-53269325 Msa0169820:CDS 45.0%
GTAGGGAGTAGGGATCAAAT+TGG + chr1_4:53270078-53270097 Msa0169820:intron 45.0%
GTCAATATTCCGACCTTCTG+AGG + chr1_4:53270419-53270438 Msa0169820:CDS 45.0%
!!! CTTCTGAGGCTTTTCGAGTA+CGG + chr1_4:53270433-53270452 Msa0169820:CDS 45.0%
ATTCGTGGTTACCCCTTAGA+AGG - chr1_4:53270579-53270598 None:intergenic 45.0%
! GGTTTATGGAAGCACATTCG+TGG - chr1_4:53270594-53270613 None:intergenic 45.0%
CCAGATTCAGGAACTTCACA+CGG - chr1_4:53270796-53270815 None:intergenic 45.0%
GATCCTAGTAGTGATGTTCG+TGG + chr1_4:53270841-53270860 Msa0169820:CDS 45.0%
CAACCACGAACATCACTACT+AGG - chr1_4:53270847-53270866 None:intergenic 45.0%
CTAGTAGTGATGTTCGTGGT+TGG + chr1_4:53270845-53270864 Msa0169820:CDS 45.0%
AGTAGTGATGTTCGTGGTTG+GGG + chr1_4:53270847-53270866 Msa0169820:CDS 45.0%
!! TTTGATTTGCAGGGCTCATC+AGG + chr1_4:53270945-53270964 Msa0169820:CDS 45.0%
TTGTTGCAGGTTGTGGAAGA+CGG + chr1_4:53271058-53271077 Msa0169820:intron 45.0%
ACAACTTGCACTGAGGTAGA+GGG + chr1_4:53271307-53271326 Msa0169820:intron 45.0%
AAATGTGGCCAAAGTTGGCT+TGG + chr1_4:53271609-53271628 Msa0169820:intron 45.0%
CAATCTCTGCTTTACCCTTC+AGG + chr1_4:53271666-53271685 Msa0169820:intron 45.0%
!! ATAAAAAAAAAAATTATACA+TGG + chr1_4:53269733-53269752 Msa0169820:intron 5.0%
TAGGCTGCGGCAAAATGCTT+TGG + chr1_4:53269773-53269792 Msa0169820:intron 50.0%
CTCGAAAAGCCTCAGAAGGT+CGG - chr1_4:53270431-53270450 None:intergenic 50.0%
CGTACTCGAAAAGCCTCAGA+AGG - chr1_4:53270435-53270454 None:intergenic 50.0%
CCGTGTGAAGTTCCTGAATC+TGG + chr1_4:53270793-53270812 Msa0169820:CDS 50.0%
CACAACTTGCACTGAGGTAG+AGG + chr1_4:53271306-53271325 Msa0169820:intron 50.0%
ACGGAGTACAAAGCCTACAC+GGG - chr1_4:53271379-53271398 None:intergenic 50.0%
GACGGAGTACAAAGCCTACA+CGG - chr1_4:53271380-53271399 None:intergenic 50.0%
GGTGCTAAAGCATGACATGG+TGG + chr1_4:53271561-53271580 Msa0169820:intron 50.0%
AAGAGGTAGACCAGGGAAGC+AGG + chr1_4:53269314-53269333 Msa0169820:CDS 55.0%
GAAAGCTGAACCTGCTTCCC+TGG - chr1_4:53269327-53269346 None:intergenic 55.0%
! TACATGGTCTAGGGCGGTTG+CGG + chr1_4:53269749-53269768 Msa0169820:intron 55.0%
GCTGCGGCAAAATGCTTTGG+TGG + chr1_4:53269776-53269795 Msa0169820:intron 55.0%
!!! CTGAGGCTTTTCGAGTACGG+TGG + chr1_4:53270436-53270455 Msa0169820:CDS 55.0%
TCATCAATGAGAGCCGCCAC+AGG - chr1_4:53270700-53270719 None:intergenic 55.0%
TTGCGAATGGCAGTTGCCGT+TGG + chr1_4:53272066-53272085 Msa0169820:intron 55.0%
!!! AGTTGCCGTTGGCGGGTTTT+AGG + chr1_4:53272077-53272096 Msa0169820:intron 55.0%
!!! GTTGCCGTTGGCGGGTTTTA+GGG + chr1_4:53272078-53272097 Msa0169820:intron 55.0%
CGAATGGCAGTTGCCGTTGG+CGG + chr1_4:53272069-53272088 Msa0169820:intron 60.0%
GAATGGCAGTTGCCGTTGGC+GGG + chr1_4:53272070-53272089 Msa0169820:intron 60.0%
CGTGCCCTAAAACCCGCCAA+CGG - chr1_4:53272085-53272104 None:intergenic 60.0%
!!! CGTTGGCGGGTTTTAGGGCA+CGG + chr1_4:53272083-53272102 Msa0169820:intron 60.0%
!!! GTTGGCGGGTTTTAGGGCAC+GGG + chr1_4:53272084-53272103 Msa0169820:intron 60.0%
AGGGCACGGGTGAACAAGCT+TGG + chr1_4:53272097-53272116 Msa0169820:intron 60.0%
! GGTCTAGGGCGGTTGCGGTT+AGG + chr1_4:53269754-53269773 Msa0169820:intron 65.0%
GGTTGGGGAGAAAGCGAGCG+TGG + chr1_4:53270862-53270881 Msa0169820:CDS 65.0%
GGGCGGTTGCGGTTAGGCTG+CGG + chr1_4:53269760-53269779 Msa0169820:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 53269020 53272176 53269020 ID=Msa0169820;Name=Msa0169820
chr1_4 mRNA 53269020 53272176 53269020 ID=Msa0169820-mRNA-1;Parent=Msa0169820;Name=Msa0169820-mRNA-1;_AED=0.21;_eAED=0.21;_QI=247|0.66|0.75|0.75|1|1|4|0|343
chr1_4 exon 53269020 53269441 53269020 ID=Msa0169820-mRNA-1:exon:15865;Parent=Msa0169820-mRNA-1
chr1_4 exon 53270407 53270966 53270407 ID=Msa0169820-mRNA-1:exon:15866;Parent=Msa0169820-mRNA-1
chr1_4 exon 53271067 53271285 53271067 ID=Msa0169820-mRNA-1:exon:15867;Parent=Msa0169820-mRNA-1
chr1_4 exon 53272099 53272176 53272099 ID=Msa0169820-mRNA-1:exon:15868;Parent=Msa0169820-mRNA-1
chr1_4 five_prime_UTR 53269020 53269266 53269020 ID=Msa0169820-mRNA-1:five_prime_utr;Parent=Msa0169820-mRNA-1
chr1_4 CDS 53269267 53269441 53269267 ID=Msa0169820-mRNA-1:cds;Parent=Msa0169820-mRNA-1
chr1_4 CDS 53270407 53270966 53270407 ID=Msa0169820-mRNA-1:cds;Parent=Msa0169820-mRNA-1
chr1_4 CDS 53271067 53271285 53271067 ID=Msa0169820-mRNA-1:cds;Parent=Msa0169820-mRNA-1
chr1_4 CDS 53272099 53272176 53272099 ID=Msa0169820-mRNA-1:cds;Parent=Msa0169820-mRNA-1
Gene Sequence

>Msa0169820

ATGGAACGTGGAGTTGTTGATGGTATTATCAATAGGTTACTTGAAGTAAGAGGTAGACCAGGGAAGCAGGTTCAGCTTTCTGAAGCAGAAATCAAACAGCTTTGTCTTGTCTCTAAAGATATCTTCATGAACCAACCTAATCTCTTGAAACTAGAAGCACCTATTAAGATCTGTGGAGATATTCATGGTCAATATTCCGACCTTCTGAGGCTTTTCGAGTACGGTGGATTTCCTCCTCGCTCGAATTATTTATTTTTAGGAGACTATGTTGATCGCGGAAAACAAAGTCTAGAAACAATATGTCTTCTTCTGGCATATAAAATAAAATATCCTAAAAACTTTTTCCTTCTAAGGGGTAACCACGAATGTGCTTCCATAAACCGTATCTACGGATTTTATGATGAATGTAAAAGGAGATACAATGTGAAGCTATGGAAAATGTTTACAGATTGTTTCAATTGTTTGCCTGTGGCGGCTCTCATTGATGAAAAGATTATCTGTATGCATGGTGGACTCTCTCCTGAATTACACGATTTAAATCAGATAAAGAATTTGCGTCGTCCGTGTGAAGTTCCTGAATCTGGTCTATTATGTGACCTCTTATGGTCTGATCCTAGTAGTGATGTTCGTGGTTGGGGAGAAAGCGAGCGTGGAGTTTCATATACATTTGGTGCCGATAGGGTTAAAGAGTTTCTTCAAAAGCATGATCTTGATTTGATTTGCAGGGCTCATCAGGTTGTGGAAGACGGATACGAGTTCTTTGCGAATAGACAACTTGTAACAATCTTTTCAGCACCTAATTACTGTGGAGAATTTGACAATGCTGGTGCTATGATGACTGTAAATGAATCACTTGTGTGTTCTTTTCAAATACTGAAGCCTCTTGATAAAAAGCCTAAGTTTAGCTTTGGAAGCACAACTACAGTCAAGTCTAGTAGTCCAACAAAATTCAAGGGCACGGGTGAACAAGCTTGGCAGCTTAATGAACAATTATCAAAAACTATAACCTTACAAGCCCATTCATCTCAATAG

Protein sequence

>Msa0169820

MERGVVDGIINRLLEVRGRPGKQVQLSEAEIKQLCLVSKDIFMNQPNLLKLEAPIKICGDIHGQYSDLLRLFEYGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPKNFFLLRGNHECASINRIYGFYDECKRRYNVKLWKMFTDCFNCLPVAALIDEKIICMHGGLSPELHDLNQIKNLRRPCEVPESGLLCDLLWSDPSSDVRGWGESERGVSYTFGADRVKEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVNESLVCSFQILKPLDKKPKFSFGSTTTVKSSSPTKFKGTGEQAWQLNEQLSKTITLQAHSSQ*