Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886840 | XP_039682690.1 | 80.516 | 426 | 20 | 3 | 1 | 426 | 1 | 363 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886840 | sp|Q67XQ0|Y4424_ARATH | 64.235 | 425 | 92 | 5 | 4 | 425 | 107 | 474 | 6.25e-165 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886840 | A0A072UAM3 | 80.516 | 426 | 20 | 3 | 1 | 426 | 1 | 363 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa0886840 | 0.812455 | 4.203085e-51 | -8.615850e-47 |
| Msa0178800 | Msa0886840 | 0.809560 | 1.781387e-50 | -8.615850e-47 |
| Msa0886840 | Msa0951400 | 0.817793 | 2.742418e-52 | -8.615850e-47 |
| Msa0886840 | Msa1388830 | 0.819952 | 8.864201e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886840 | MtrunA17_Chr6g0467811 | 79.953 | 424 | 22 | 3 | 3 | 426 | 102 | 462 | 0.0 | 617 |
| Msa0886840 | MtrunA17_Chr4g0065751 | 76.359 | 423 | 53 | 1 | 4 | 426 | 107 | 482 | 0.0 | 604 |
| Msa0886840 | MtrunA17_Chr7g0259621 | 55.584 | 394 | 108 | 8 | 4 | 384 | 107 | 446 | 4.58e-131 | 386 |
| Msa0886840 | MtrunA17_Chr4g0049251 | 47.074 | 393 | 141 | 6 | 4 | 382 | 84 | 423 | 5.00e-109 | 328 |
| Msa0886840 | MtrunA17_Chr2g0280251 | 44.275 | 393 | 156 | 5 | 4 | 382 | 84 | 427 | 3.60e-98 | 300 |
| Msa0886840 | MtrunA17_Chr3g0141551 | 40.587 | 409 | 164 | 6 | 4 | 389 | 84 | 436 | 1.00e-95 | 296 |
| Msa0886840 | MtrunA17_Chr7g0217521 | 59.592 | 245 | 52 | 1 | 3 | 247 | 106 | 303 | 2.47e-92 | 281 |
| Msa0886840 | MtrunA17_Chr6g0469911 | 39.401 | 434 | 175 | 7 | 4 | 423 | 106 | 465 | 3.28e-92 | 286 |
| Msa0886840 | MtrunA17_Chr6g0469771 | 42.449 | 245 | 93 | 2 | 4 | 247 | 85 | 282 | 5.17e-65 | 209 |
| Msa0886840 | MtrunA17_Chr7g0217531 | 69.718 | 142 | 38 | 1 | 245 | 386 | 4 | 140 | 4.27e-60 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886840 | AT4G14240.3 | 64.235 | 425 | 92 | 5 | 4 | 425 | 3 | 370 | 4.50e-167 | 474 |
| Msa0886840 | AT4G14240.2 | 64.235 | 425 | 92 | 5 | 4 | 425 | 98 | 465 | 5.52e-166 | 475 |
| Msa0886840 | AT4G14240.1 | 64.235 | 425 | 92 | 5 | 4 | 425 | 107 | 474 | 6.36e-166 | 476 |
| Msa0886840 | AT4G14230.1 | 60.628 | 414 | 109 | 3 | 4 | 415 | 106 | 467 | 2.37e-163 | 469 |
| Msa0886840 | AT1G03270.1 | 58.779 | 393 | 92 | 6 | 4 | 384 | 105 | 439 | 8.36e-144 | 419 |
| Msa0886840 | AT1G47330.2 | 41.111 | 450 | 186 | 8 | 4 | 426 | 3 | 400 | 3.53e-104 | 316 |
| Msa0886840 | AT1G47330.1 | 41.111 | 450 | 186 | 8 | 4 | 426 | 84 | 481 | 6.69e-103 | 316 |
| Msa0886840 | AT5G52790.4 | 45.714 | 385 | 134 | 8 | 4 | 386 | 85 | 396 | 5.68e-101 | 307 |
| Msa0886840 | AT5G52790.1 | 44.588 | 388 | 140 | 6 | 4 | 389 | 85 | 399 | 6.40e-101 | 310 |
| Msa0886840 | AT4G33700.3 | 44.697 | 396 | 145 | 8 | 4 | 382 | 1 | 339 | 3.11e-99 | 300 |
| Msa0886840 | AT4G33700.1 | 44.697 | 396 | 145 | 8 | 4 | 382 | 84 | 422 | 2.74e-98 | 300 |
| Msa0886840 | AT2G14520.2 | 44.503 | 382 | 159 | 5 | 4 | 382 | 84 | 415 | 2.87e-98 | 300 |
| Msa0886840 | AT2G14520.3 | 43.299 | 388 | 161 | 5 | 4 | 382 | 1 | 338 | 5.23e-97 | 294 |
| Msa0886840 | AT2G14520.4 | 43.299 | 388 | 161 | 5 | 4 | 382 | 84 | 421 | 1.81e-96 | 296 |
| Msa0886840 | AT2G14520.1 | 43.299 | 388 | 161 | 5 | 4 | 382 | 84 | 421 | 1.81e-96 | 296 |
| Msa0886840 | AT5G52790.3 | 44.715 | 369 | 129 | 8 | 4 | 370 | 85 | 380 | 1.56e-91 | 282 |
| Msa0886840 | AT5G52790.2 | 44.715 | 369 | 129 | 8 | 4 | 370 | 85 | 380 | 1.56e-91 | 282 |
| Msa0886840 | AT5G52790.5 | 44.474 | 371 | 131 | 8 | 4 | 372 | 85 | 382 | 5.42e-91 | 283 |
| Msa0886840 | AT4G33700.2 | 48.583 | 247 | 79 | 3 | 2 | 247 | 82 | 281 | 4.52e-73 | 231 |
Find 141 sgRNAs with CRISPR-Local
Find 445 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATTCCTTTAGTATATA+AGG | 0.170752 | 6_1:+47139617 | Msa0886840:three_prime_UTR |
| CAAAATCCCAGGAATATTAT+TGG | 0.213736 | 6_1:+47137570 | Msa0886840:CDS |
| CCATATGACTATTTCCCTTT+TGG | 0.240744 | 6_1:-47137905 | None:intergenic |
| CTCAAGAGCTATATAATAAC+TGG | 0.252606 | 6_1:+47139825 | Msa0886840:three_prime_UTR |
| CTGACAGGGGTCTCTGATTC+AGG | 0.253158 | 6_1:-47137726 | None:intergenic |
| ATCTATCTGTCTATCTGGTT+CGG | 0.281319 | 6_1:-47133817 | Msa0886830:intron |
| CAAGATCAAACGACTTAAAT+AGG | 0.285193 | 6_1:-47139687 | None:intergenic |
| AAGTTATCTTGAGAGGAAAA+TGG | 0.285450 | 6_1:+47139568 | Msa0886840:exon |
| TCTCTGTAATGCTGTTTCTA+TGG | 0.295788 | 6_1:+47134526 | Msa0886840:five_prime_UTR |
| GTCAAGCCTTCAAAGCTTAC+TGG | 0.302358 | 6_1:+47138086 | Msa0886840:CDS |
| AAAGCTCTTGTCTCCATTCA+TGG | 0.302751 | 6_1:+47135859 | Msa0886840:CDS |
| CAGGTTCTGGATTGTGTACT+GGG | 0.328411 | 6_1:+47135802 | Msa0886840:intron |
| CTGTTATCTATCTGTCTATC+TGG | 0.329040 | 6_1:-47133822 | Msa0886830:intron |
| ACCAACGAAGGCATACCTTT+TGG | 0.342222 | 6_1:+47133912 | Msa0886840:five_prime_UTR |
| AAAATCCCAGGAATATTATT+GGG | 0.347890 | 6_1:+47137571 | Msa0886840:CDS |
| TAAAAGCCCAATAATATTCC+TGG | 0.351419 | 6_1:-47137577 | None:intergenic |
| TCAGGTTCTGGATTGTGTAC+TGG | 0.352149 | 6_1:+47135801 | Msa0886840:intron |
| AAGTTTGCACTGCCTTACTA+TGG | 0.353103 | 6_1:-47139543 | None:intergenic |
| TTATTGCCAGTAAGCTTTGA+AGG | 0.366582 | 6_1:-47138092 | None:intergenic |
| AATGGTCAACGCATTCAAAA+TGG | 0.371245 | 6_1:-47133868 | Msa0886830:intron |
| AAAGAAAATGTTGATTCAAT+AGG | 0.371631 | 6_1:-47136540 | None:intergenic |
| TACTCCATTGCTACAAGAAC+TGG | 0.375041 | 6_1:+47138031 | Msa0886840:CDS |
| TCTATCTGTCTATCTGGTTC+GGG | 0.375788 | 6_1:-47133816 | Msa0886830:intron |
| GGAATTCCTTTAGTATATAA+GGG | 0.378620 | 6_1:+47139618 | Msa0886840:three_prime_UTR |
| CTTGATTGAAGAGTTTATCT+AGG | 0.383532 | 6_1:-47135390 | None:intergenic |
| CTGTCTATCTGGTTCGGGTT+AGG | 0.385586 | 6_1:-47133811 | Msa0886830:intron |
| TTATACCTCCTTGCCATGAA+TGG | 0.388399 | 6_1:-47135872 | None:intergenic |
| TCAGTCGACTTTCGGATTGA+TGG | 0.388930 | 6_1:-47138505 | None:intergenic |
| AAGAGTTTATCTAGGTATAG+AGG | 0.389663 | 6_1:-47135382 | None:intergenic |
| ATGTTACCCTCTTTCTTATC+CGG | 0.389771 | 6_1:+47135661 | Msa0886840:CDS |
| ATCTCAAATCAGGGAGGCAT+TGG | 0.390658 | 6_1:+47137503 | Msa0886840:intron |
| CCTTCTTACGAAAATATTCA+TGG | 0.392818 | 6_1:+47138158 | Msa0886840:CDS |
| CTCTTTGCCGGAGTCATGTC+CGG | 0.396365 | 6_1:+47133981 | Msa0886840:five_prime_UTR |
| CAAGCAATTTGTAGTAGATA+TGG | 0.402882 | 6_1:+47135587 | Msa0886840:CDS |
| AGCAAGGTGGTTACTACTAA+TGG | 0.406615 | 6_1:-47133886 | Msa0886830:intron |
| AATATGTTGACGTTCATAAC+AGG | 0.420073 | 6_1:+47138350 | Msa0886840:CDS |
| TTTAGATGTTAATTCAAAGT+TGG | 0.434582 | 6_1:+47136560 | Msa0886840:CDS |
| GGAACGACGAGGCTTTATTT+AGG | 0.438067 | 6_1:+47135824 | Msa0886840:CDS |
| TCGTGATATTATATTATACA+TGG | 0.439648 | 6_1:-47139887 | None:intergenic |
| CACTACGTTCAAGAATTTCA+AGG | 0.449665 | 6_1:-47134040 | None:intergenic |
| TATTATTCAAAGTTGAAAAG+TGG | 0.453661 | 6_1:+47133719 | None:intergenic |
| GATGCTGGAAAACAAGGAAT+GGG | 0.456184 | 6_1:+47139663 | Msa0886840:three_prime_UTR |
| AATATTCATGGTGAAGTGAT+TGG | 0.459543 | 6_1:+47138170 | Msa0886840:CDS |
| CTATCTGATGCTGGAAAACA+AGG | 0.459979 | 6_1:+47139657 | Msa0886840:three_prime_UTR |
| TAGAGGAAGAGCCTGCATAT+TGG | 0.465594 | 6_1:-47135365 | None:intergenic |
| CCAAAAGGGAAATAGTCATA+TGG | 0.467713 | 6_1:+47137905 | Msa0886840:CDS |
| AGTTGAAAAGTGGGAAAGGA+AGG | 0.469193 | 6_1:+47133729 | Msa0886840:five_prime_UTR |
| GTAGAATTTACCTTTCCAAC+CGG | 0.473889 | 6_1:-47135680 | None:intergenic |
| TACCCTCTTTCTTATCCGGT+TGG | 0.476027 | 6_1:+47135665 | Msa0886840:CDS |
| ATTATTCAAAGTTGAAAAGT+GGG | 0.476349 | 6_1:+47133720 | None:intergenic |
| TATACTGAACGAGTTCCAAA+AGG | 0.480137 | 6_1:+47137890 | Msa0886840:CDS |
| CTTTCAAATGTCCAATATGC+AGG | 0.481039 | 6_1:+47135354 | Msa0886840:exon |
| TTGTATTAGCTATCTGATGC+TGG | 0.484388 | 6_1:+47139648 | Msa0886840:three_prime_UTR |
| CGGATAGATACTGCACTGAC+AGG | 0.486816 | 6_1:-47137741 | None:intergenic |
| TCATCTAGTGGGTATTCATA+TGG | 0.489386 | 6_1:-47136955 | None:intergenic |
| CACGAAAATAGTTTCGAGTA+GGG | 0.494022 | 6_1:+47139905 | Msa0886840:three_prime_UTR |
| AGTGATTGGTATTATCACTT+TGG | 0.495868 | 6_1:+47138184 | Msa0886840:CDS |
| CTGTCAGTGCAGTATCTATC+CGG | 0.501210 | 6_1:+47137742 | Msa0886840:CDS |
| AGTTGCAGCTGCTTCCTCAA+TGG | 0.501520 | 6_1:+47138474 | Msa0886840:CDS |
| AAGCAACCCTTATATACTAA+AGG | 0.504615 | 6_1:-47139624 | None:intergenic |
| GTCATGTCCGGTCTCACACT+TGG | 0.509099 | 6_1:+47133993 | Msa0886840:five_prime_UTR |
| GAAGTAAAGTAACAAGAAGC+TGG | 0.510256 | 6_1:-47134505 | None:intergenic |
| TGATGCTGGAAAACAAGGAA+TGG | 0.512126 | 6_1:+47139662 | Msa0886840:three_prime_UTR |
| GTTGTGAAGACTACCGGAAA+AGG | 0.512912 | 6_1:+47137933 | Msa0886840:CDS |
| ATGTTAATTCAAAGTTGGAC+TGG | 0.514990 | 6_1:+47136565 | Msa0886840:CDS |
| TCTCAAATCAGGGAGGCATT+GGG | 0.517004 | 6_1:+47137504 | Msa0886840:intron |
| GAATCCAGTTCTTGTAGCAA+TGG | 0.517698 | 6_1:-47138035 | None:intergenic |
| CATGAGACCAAGTGTGAGAC+CGG | 0.518128 | 6_1:-47134000 | None:intergenic |
| TTCTCTTCATCAATTAGTTG+CGG | 0.525530 | 6_1:-47137966 | None:intergenic |
| AGCACTTGATTTGACCGAAA+AGG | 0.528383 | 6_1:+47136056 | Msa0886840:CDS |
| ACGCACAAGCCATGAAAAGT+TGG | 0.534177 | 6_1:-47135624 | None:intergenic |
| TCGTTCAGTATATCGTATAG+AGG | 0.534507 | 6_1:-47137879 | None:intergenic |
| AAAAGCCCAATAATATTCCT+GGG | 0.537470 | 6_1:-47137576 | None:intergenic |
| CATCCAGGGAGGCCATAGTA+AGG | 0.541382 | 6_1:+47139531 | Msa0886840:intron |
| TCACGAAAATAGTTTCGAGT+AGG | 0.542141 | 6_1:+47139904 | Msa0886840:three_prime_UTR |
| AAACACACCGTGGTATTCTC+CGG | 0.544224 | 6_1:-47137761 | None:intergenic |
| TGGGAAAGATTCTTGCCCGC+GGG | 0.549753 | 6_1:+47137523 | Msa0886840:CDS |
| AGTAGATATGGTCTCGCTGT+AGG | 0.551405 | 6_1:+47135599 | Msa0886840:CDS |
| CTGGTTCGGGTTAGGATCCA+AGG | 0.554401 | 6_1:-47133803 | Msa0886830:intron |
| CTGTCTATTCTCAAAATCCC+AGG | 0.554478 | 6_1:+47137559 | Msa0886840:CDS |
| CTGTAATGCTGTTTCTATGG+AGG | 0.556264 | 6_1:+47134529 | Msa0886840:five_prime_UTR |
| TCTTTCTTATCCGGTTGGAA+AGG | 0.558257 | 6_1:+47135670 | Msa0886840:CDS |
| TCAAAGTTGAAAAGTGGGAA+AGG | 0.558298 | 6_1:+47133725 | None:intergenic |
| AGACATACACGTATGACGTA+TGG | 0.559217 | 6_1:+47133843 | Msa0886840:five_prime_UTR |
| CGTGATATTATATTATACAT+GGG | 0.559585 | 6_1:-47139886 | None:intergenic |
| TGCCTTCGTTGGTGAGAGCA+AGG | 0.559592 | 6_1:-47133902 | Msa0886830:intron |
| GTGGAACGGTGCTGTTCACA+AGG | 0.562367 | 6_1:-47136933 | None:intergenic |
| TTTGATGCAAAGAAAAGTGT+TGG | 0.562539 | 6_1:+47137990 | Msa0886840:CDS |
| TCGTATAGAGGCATATCAGA+TGG | 0.565213 | 6_1:-47137867 | None:intergenic |
| TATCTACTACAAATTGCTTG+TGG | 0.565273 | 6_1:-47135584 | None:intergenic |
| AACTTCAAAGTTATCTTGAG+AGG | 0.566616 | 6_1:+47139561 | Msa0886840:exon |
| ATCCATGTTGCAGATCCAAA+AGG | 0.568878 | 6_1:-47133927 | Msa0886830:intron |
| TGATGGAGCTCGTGCCATTG+AGG | 0.569237 | 6_1:-47138488 | None:intergenic |
| ATTGGACATTTGAAAGCCAA+TGG | 0.570238 | 6_1:-47135347 | None:intergenic |
| CTTGAAATTCTTGAACGTAG+TGG | 0.572868 | 6_1:+47134041 | Msa0886840:five_prime_UTR |
| TCCAAAAGGTATGCCTTCGT+TGG | 0.579698 | 6_1:-47133913 | Msa0886830:intron |
| TTTCCAACCGGATAAGAAAG+AGG | 0.579776 | 6_1:-47135668 | None:intergenic |
| TGCAGCGATCATTCTTCCAG+TGG | 0.581810 | 6_1:+47134469 | Msa0886840:intron |
| TTGGATGCAGGAAGAAATTG+TGG | 0.584566 | 6_1:+47138315 | Msa0886840:intron |
| GGTCGCAATGATCATGTAGC+GGG | 0.587684 | 6_1:-47136887 | None:intergenic |
| GGATAGATACTGCACTGACA+GGG | 0.588476 | 6_1:-47137740 | None:intergenic |
| GCTGCTGTTGTGAAGACTAC+CGG | 0.588617 | 6_1:+47137927 | Msa0886840:CDS |
| ACTAGTTTGCAGAGTAGTGA+TGG | 0.595827 | 6_1:+47138122 | Msa0886840:CDS |
| ATACTGAACGAGTTCCAAAA+GGG | 0.596540 | 6_1:+47137891 | Msa0886840:CDS |
| TCTTGTCTCCATTCATGGCA+AGG | 0.598589 | 6_1:+47135864 | Msa0886840:CDS |
| ATGCAAAGAAAAGTGTTGGT+GGG | 0.598862 | 6_1:+47137994 | Msa0886840:CDS |
| AGTAGTGATGGCACATTAAG+CGG | 0.599766 | 6_1:+47138134 | Msa0886840:CDS |
| GTGATATTATATTATACATG+GGG | 0.599907 | 6_1:-47139885 | None:intergenic |
| TGCAAAGAAAAGTGTTGGTG+GGG | 0.604810 | 6_1:+47137995 | Msa0886840:CDS |
| TGTGAGACCGGACATGACTC+CGG | 0.604884 | 6_1:-47133988 | None:intergenic |
| TTGGGAAAGATTCTTGCCCG+CGG | 0.604895 | 6_1:+47137522 | Msa0886840:CDS |
| TCTAGTGGGTATTCATATGG+TGG | 0.607994 | 6_1:-47136952 | None:intergenic |
| CTACATGATCATTGCGACCA+TGG | 0.614093 | 6_1:+47136891 | Msa0886840:CDS |
| TGGTTGAAACGATCATCTAG+TGG | 0.614262 | 6_1:-47136967 | None:intergenic |
| TCAAGAGCTATATAATAACT+GGG | 0.615236 | 6_1:+47139826 | Msa0886840:three_prime_UTR |
| CAACCATGGTAGAACTTGTG+AGG | 0.615833 | 6_1:+47136984 | Msa0886840:CDS |
| GCAACATGGATTGCTTACGC+TGG | 0.623937 | 6_1:+47133939 | Msa0886840:five_prime_UTR |
| GTGAGACGGTACAGTTGACA+AGG | 0.628306 | 6_1:-47137012 | None:intergenic |
| TTCCAACCGGATAAGAAAGA+GGG | 0.628963 | 6_1:-47135667 | None:intergenic |
| TGGGTATTCATATGGTGGAA+CGG | 0.629104 | 6_1:-47136947 | None:intergenic |
| CTAGATGATCGTTTCAACCA+TGG | 0.630004 | 6_1:+47136970 | Msa0886840:CDS |
| TTGAATTCTACAAGATAACA+AGG | 0.637128 | 6_1:+47139597 | Msa0886840:three_prime_UTR |
| CACCTTGCTCTCACCAACGA+AGG | 0.637959 | 6_1:+47133900 | Msa0886840:five_prime_UTR |
| GATGCAAAGAAAAGTGTTGG+TGG | 0.638703 | 6_1:+47137993 | Msa0886840:CDS |
| CGACCATGGTAGAACTTGTG+AGG | 0.639182 | 6_1:+47136905 | Msa0886840:CDS |
| GATGAGACAACAATTATCAG+TGG | 0.641472 | 6_1:+47136033 | Msa0886840:CDS |
| ATGCTGGAAAACAAGGAATG+GGG | 0.647439 | 6_1:+47139664 | Msa0886840:three_prime_UTR |
| GGTTGAAACGATCATCTAGT+GGG | 0.653260 | 6_1:-47136966 | None:intergenic |
| TGGTCGCAATGATCATGTAG+CGG | 0.654696 | 6_1:-47136888 | None:intergenic |
| AGGTTCTGGATTGTGTACTG+GGG | 0.658095 | 6_1:+47135803 | Msa0886840:intron |
| GATAGATACTGCACTGACAG+GGG | 0.670187 | 6_1:-47137739 | None:intergenic |
| ATGCCTCACAAGTTCTACCA+TGG | 0.670318 | 6_1:-47136987 | None:intergenic |
| TTTGAGAATAGACAGGAACT+CGG | 0.672689 | 6_1:-47137551 | None:intergenic |
| ATGCCTCACAAGTTCTACCA+TGG | 0.672757 | 6_1:-47136908 | None:intergenic |
| TGTCTCCATTCATGGCAAGG+AGG | 0.683158 | 6_1:+47135867 | Msa0886840:CDS |
| CAAGAGCTATATAATAACTG+GGG | 0.700868 | 6_1:+47139827 | Msa0886840:three_prime_UTR |
| CTTCGTTGGTGAGAGCAAGG+TGG | 0.701135 | 6_1:-47133899 | Msa0886830:intron |
| TTGTGTACTGGGGAACGACG+AGG | 0.705170 | 6_1:+47135813 | Msa0886840:CDS |
| TATCTATCCGGAGAATACCA+CGG | 0.709255 | 6_1:+47137754 | Msa0886840:CDS |
| TGGAACGGTGCTGTTCACAA+GGG | 0.726748 | 6_1:-47136932 | None:intergenic |
| TGAGACGGTACAGTTGACAA+GGG | 0.750902 | 6_1:-47137011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCCAATTTATTTATAA+TGG | + | chr6_1:47137827-47137846 | Msa0886840:intron | 10.0% |
| !! | ATATACCATTATAAATAAAT+TGG | - | chr6_1:47137835-47137854 | None:intergenic | 10.0% |
| !!! | AGATTTTAAAACAATATTAT+AGG | + | chr6_1:47138784-47138803 | Msa0886840:intron | 10.0% |
| !! | AAATAATCAAAGAAACTATT+GGG | - | chr6_1:47134120-47134139 | None:intergenic | 15.0% |
| !! | TAAATAATCAAAGAAACTAT+TGG | - | chr6_1:47134121-47134140 | None:intergenic | 15.0% |
| !! | TAATAGTATTATATGAAACA+CGG | + | chr6_1:47134143-47134162 | Msa0886840:intron | 15.0% |
| !!! | TTTTAAATTATTAGTTGTGT+CGG | + | chr6_1:47134377-47134396 | Msa0886840:intron | 15.0% |
| !!! | TATTTTTCTATAAACTATCA+TGG | - | chr6_1:47134672-47134691 | None:intergenic | 15.0% |
| !! | GAATATTTAACAAAAATTAC+AGG | - | chr6_1:47135234-47135253 | None:intergenic | 15.0% |
| !! | TGTTAAATATTCTGATAAAA+AGG | + | chr6_1:47135242-47135261 | Msa0886840:intron | 15.0% |
| !! | GTTAAATATTCTGATAAAAA+GGG | + | chr6_1:47135243-47135262 | Msa0886840:intron | 15.0% |
| !! | GACAAGTTAATATTATTAAT+TGG | - | chr6_1:47135545-47135564 | None:intergenic | 15.0% |
| !! | ATTAAGAAAACACAAAAATT+AGG | - | chr6_1:47136119-47136138 | None:intergenic | 15.0% |
| !!! | TAAAAATCTTGTTTTGTATT+GGG | - | chr6_1:47137237-47137256 | None:intergenic | 15.0% |
| !!! | ATAAAAATCTTGTTTTGTAT+TGG | - | chr6_1:47137238-47137257 | None:intergenic | 15.0% |
| !! | ATCAAGAAAATTATTACAAA+GGG | - | chr6_1:47139443-47139462 | None:intergenic | 15.0% |
| !! | AATCAAGAAAATTATTACAA+AGG | - | chr6_1:47139444-47139463 | None:intergenic | 15.0% |
| !! | AAAGTAGTAATAACAAAAAT+AGG | - | chr6_1:47139777-47139796 | None:intergenic | 15.0% |
| !!! | ATTATTGTATAATTTTTGTG+TGG | + | chr6_1:47139852-47139871 | Msa0886840:three_prime_UTR | 15.0% |
| !! | GCTTATTCTCTAAATATTTA+GGG | + | chr6_1:47134746-47134765 | Msa0886840:intron | 20.0% |
| !!! | AATGATTTTGTAATTAGAAC+CGG | - | chr6_1:47135013-47135032 | None:intergenic | 20.0% |
| !! | TGAATCTAAAAATTTGTAGA+GGG | - | chr6_1:47135055-47135074 | None:intergenic | 20.0% |
| !! | ATGAATCTAAAAATTTGTAG+AGG | - | chr6_1:47135056-47135075 | None:intergenic | 20.0% |
| !!! | GTCAATTGATAGTATTAATA+CGG | - | chr6_1:47135104-47135123 | None:intergenic | 20.0% |
| !! | TTGAATGCATTTATATACAA+TGG | + | chr6_1:47135145-47135164 | Msa0886840:intron | 20.0% |
| !! | TGAATGCATTTATATACAAT+GGG | + | chr6_1:47135146-47135165 | Msa0886840:intron | 20.0% |
| !! | AAAACATAGAAATTACTAGA+TGG | - | chr6_1:47136485-47136504 | None:intergenic | 20.0% |
| !!! | AAAGAAAATGTTGATTCAAT+AGG | - | chr6_1:47136543-47136562 | None:intergenic | 20.0% |
| !! | TTTAGATGTTAATTCAAAGT+TGG | + | chr6_1:47136560-47136579 | Msa0886840:CDS | 20.0% |
| !! | ATCTAAAAAATTCAAACATC+CGG | + | chr6_1:47137094-47137113 | Msa0886840:intron | 20.0% |
| !!! | CAACAATAAATATTTTCCAA+TGG | - | chr6_1:47137365-47137384 | None:intergenic | 20.0% |
| !!! | TTTTCAGGAAAATAAAATAG+TGG | - | chr6_1:47137469-47137488 | None:intergenic | 20.0% |
| !! | TTATAAATTTATTCTCGTTG+CGG | + | chr6_1:47137784-47137803 | Msa0886840:intron | 20.0% |
| !! | TTATAATGGTATATATTTGC+AGG | + | chr6_1:47137841-47137860 | Msa0886840:intron | 20.0% |
| !! | TATAATGGTATATATTTGCA+GGG | + | chr6_1:47137842-47137861 | Msa0886840:intron | 20.0% |
| !! | TAATTCTAAACTTGAATTGA+AGG | + | chr6_1:47138696-47138715 | Msa0886840:intron | 20.0% |
| !! | AATTCTAAACTTGAATTGAA+GGG | + | chr6_1:47138697-47138716 | Msa0886840:intron | 20.0% |
| !! | TTGTTGAATTAAATATGACT+TGG | - | chr6_1:47138866-47138885 | None:intergenic | 20.0% |
| !! | TTAATTATACAGTTAAGTGA+AGG | + | chr6_1:47138909-47138928 | Msa0886840:intron | 20.0% |
| !! | AGTTAATTCTTAAGATATTG+AGG | - | chr6_1:47138955-47138974 | None:intergenic | 20.0% |
| !! | ATATCTTAAGAATTAACTCT+TGG | + | chr6_1:47138957-47138976 | Msa0886840:intron | 20.0% |
| !!! | AAATTCATTTTTCTTCTTGT+AGG | + | chr6_1:47139748-47139767 | Msa0886840:three_prime_UTR | 20.0% |
| !!! | AATTCATTTTTCTTCTTGTA+GGG | + | chr6_1:47139749-47139768 | Msa0886840:three_prime_UTR | 20.0% |
| !!! | TTGCTAGTTTTCTATAATAA+GGG | - | chr6_1:47139802-47139821 | None:intergenic | 20.0% |
| !! | GTGATATTATATTATACATG+GGG | - | chr6_1:47139888-47139907 | None:intergenic | 20.0% |
| !! | CGTGATATTATATTATACAT+GGG | - | chr6_1:47139889-47139908 | None:intergenic | 20.0% |
| !! | TCGTGATATTATATTATACA+TGG | - | chr6_1:47139890-47139909 | None:intergenic | 20.0% |
| !! | TGATTTTATAATCATCACCT+TGG | + | chr6_1:47133786-47133805 | Msa0886840:five_prime_UTR | 25.0% |
| ! | CGCTTATTCTCTAAATATTT+AGG | + | chr6_1:47134745-47134764 | Msa0886840:intron | 25.0% |
| ! | CTAAAATAAGCTAATCCAAA+CGG | - | chr6_1:47134773-47134792 | None:intergenic | 25.0% |
| !! | TTTCATAAAGTACTTGCATA+CGG | - | chr6_1:47134811-47134830 | None:intergenic | 25.0% |
| ! | AATATTCTGATAAAAAGGGA+CGG | + | chr6_1:47135247-47135266 | Msa0886840:intron | 25.0% |
| !!! | GTTACTTTCGTTCTTTTTTT+TGG | + | chr6_1:47135433-47135452 | Msa0886840:CDS | 25.0% |
| ! | AGAACTTCATAAAATTGCTT+AGG | - | chr6_1:47135518-47135537 | None:intergenic | 25.0% |
| !! | AAAATAAGTCTTGTCAACTT+TGG | + | chr6_1:47135917-47135936 | Msa0886840:intron | 25.0% |
| !! | CTACTCAACTATTTTATTCA+TGG | + | chr6_1:47135945-47135964 | Msa0886840:intron | 25.0% |
| !!! | ATTTAACCTGCTTGTTTTTT+AGG | + | chr6_1:47135984-47136003 | Msa0886840:intron | 25.0% |
| ! | TTTAACTAGTGTCTTCTATT+TGG | + | chr6_1:47136212-47136231 | Msa0886840:intron | 25.0% |
| ! | TTAACTAGTGTCTTCTATTT+GGG | + | chr6_1:47136213-47136232 | Msa0886840:intron | 25.0% |
| ! | ATGCTCTTTATACAAACATA+TGG | - | chr6_1:47136438-47136457 | None:intergenic | 25.0% |
| !! | TTGTTATTCTTCAGTATGTT+AGG | + | chr6_1:47136609-47136628 | Msa0886840:intron | 25.0% |
| !!! | TTGAATTTTTTAGATGTGTG+AGG | - | chr6_1:47137089-47137108 | None:intergenic | 25.0% |
| ! | TCTAAAAAATTCAAACATCC+GGG | + | chr6_1:47137095-47137114 | Msa0886840:intron | 25.0% |
| ! | CATAACAATAAGTCATAAAG+AGG | - | chr6_1:47137307-47137326 | None:intergenic | 25.0% |
| ! | TTGCATATATCTTACATGTA+GGG | - | chr6_1:47137413-47137432 | None:intergenic | 25.0% |
| ! | TTTGCATATATCTTACATGT+AGG | - | chr6_1:47137414-47137433 | None:intergenic | 25.0% |
| ! | AAAATCCCAGGAATATTATT+GGG | + | chr6_1:47137571-47137590 | Msa0886840:CDS | 25.0% |
| !! | TACATTATCTCATTCCTTTT+AGG | + | chr6_1:47137633-47137652 | Msa0886840:intron | 25.0% |
| ! | AAATTTATAAAAACACACCG+TGG | - | chr6_1:47137774-47137793 | None:intergenic | 25.0% |
| ! | GAAGAAATACTAAAAACCAA+GGG | - | chr6_1:47138267-47138286 | None:intergenic | 25.0% |
| ! | AACTGAATGAAATTATCTCT+TGG | + | chr6_1:47138296-47138315 | Msa0886840:intron | 25.0% |
| !! | TAGGAAAGTTGATTTCATTT+GGG | - | chr6_1:47138595-47138614 | None:intergenic | 25.0% |
| !! | ATAGGAAAGTTGATTTCATT+TGG | - | chr6_1:47138596-47138615 | None:intergenic | 25.0% |
| !!! | TGAGAAAATGCTTCATTTTT+GGG | + | chr6_1:47138621-47138640 | Msa0886840:intron | 25.0% |
| !! | TTTGTGCTTAATGCTTTTAA+TGG | - | chr6_1:47138755-47138774 | None:intergenic | 25.0% |
| !!! | TTTTCTTGATTTGCTTGAAA+AGG | + | chr6_1:47139453-47139472 | Msa0886840:intron | 25.0% |
| ! | AAAACAATTAGTATCCATGT+TGG | - | chr6_1:47139496-47139515 | None:intergenic | 25.0% |
| ! | TTGAATTCTACAAGATAACA+AGG | + | chr6_1:47139597-47139616 | Msa0886840:three_prime_UTR | 25.0% |
| ! | AGGAATTCCTTTAGTATATA+AGG | + | chr6_1:47139617-47139636 | Msa0886840:three_prime_UTR | 25.0% |
| ! | GGAATTCCTTTAGTATATAA+GGG | + | chr6_1:47139618-47139637 | Msa0886840:three_prime_UTR | 25.0% |
| !!! | TGCTAGTTTTCTATAATAAG+GGG | - | chr6_1:47139801-47139820 | None:intergenic | 25.0% |
| !!! | GTTGCTAGTTTTCTATAATA+AGG | - | chr6_1:47139803-47139822 | None:intergenic | 25.0% |
| ! | TCAAGAGCTATATAATAACT+GGG | + | chr6_1:47139826-47139845 | Msa0886840:three_prime_UTR | 25.0% |
| !! | ATTGTATAATTTTTGTGTGG+AGG | + | chr6_1:47139855-47139874 | Msa0886840:three_prime_UTR | 25.0% |
| CAGTGTAATTACAAATGTGT+CGG | - | chr6_1:47134209-47134228 | None:intergenic | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | - | chr6_1:47134346-47134365 | None:intergenic | 30.0% | |
| CAGGTATTAAGAAAAGTTGT+TGG | - | chr6_1:47135215-47135234 | None:intergenic | 30.0% | |
| AAGAGTTTATCTAGGTATAG+AGG | - | chr6_1:47135385-47135404 | None:intergenic | 30.0% | |
| CTTGATTGAAGAGTTTATCT+AGG | - | chr6_1:47135393-47135412 | None:intergenic | 30.0% | |
| !!! | TTTCGTTCTTTTTTTTGGTG+AGG | + | chr6_1:47135438-47135457 | Msa0886840:CDS | 30.0% |
| ! | TAACTTGTCTTTCTAATTGC+AGG | + | chr6_1:47135556-47135575 | Msa0886840:intron | 30.0% |
| TATCTACTACAAATTGCTTG+TGG | - | chr6_1:47135587-47135606 | None:intergenic | 30.0% | |
| CAAGCAATTTGTAGTAGATA+TGG | + | chr6_1:47135587-47135606 | Msa0886840:CDS | 30.0% | |
| CTATTCTCATATATAGACGA+TGG | + | chr6_1:47135742-47135761 | Msa0886840:intron | 30.0% | |
| GAAACAAATATTCGTTGGAT+AGG | - | chr6_1:47135783-47135802 | None:intergenic | 30.0% | |
| ATCCAACGAATATTTGTTTC+AGG | + | chr6_1:47135783-47135802 | Msa0886840:intron | 30.0% | |
| AACCTGAAACAAATATTCGT+TGG | - | chr6_1:47135788-47135807 | None:intergenic | 30.0% | |
| AATGATGTTGGAAATGGAAT+AGG | + | chr6_1:47136252-47136271 | Msa0886840:intron | 30.0% | |
| ATGATGTTGGAAATGGAATA+GGG | + | chr6_1:47136253-47136272 | Msa0886840:intron | 30.0% | |
| ATATTTATCAATGTGCCATG+CGG | + | chr6_1:47136292-47136311 | Msa0886840:intron | 30.0% | |
| ATGTTAATTCAAAGTTGGAC+TGG | + | chr6_1:47136565-47136584 | Msa0886840:CDS | 30.0% | |
| CTAAAAAATTCAAACATCCG+GGG | + | chr6_1:47137096-47137115 | Msa0886840:intron | 30.0% | |
| TAAAGAGTGATGACTTTGTA+GGG | - | chr6_1:47137161-47137180 | None:intergenic | 30.0% | |
| AGAGGAAGAAAATGAAATCT+TGG | - | chr6_1:47137289-47137308 | None:intergenic | 30.0% | |
| ! | TTTTCCAATGGTCTAGTAAT+TGG | - | chr6_1:47137353-47137372 | None:intergenic | 30.0% |
| TGCATATATCTTACATGTAG+GGG | - | chr6_1:47137412-47137431 | None:intergenic | 30.0% | |
| ATATATGCAAAACATATGCG+TGG | + | chr6_1:47137423-47137442 | Msa0886840:intron | 30.0% | |
| CAAAATCCCAGGAATATTAT+TGG | + | chr6_1:47137570-47137589 | Msa0886840:CDS | 30.0% | |
| AAAAGCCCAATAATATTCCT+GGG | - | chr6_1:47137579-47137598 | None:intergenic | 30.0% | |
| TAAAAGCCCAATAATATTCC+TGG | - | chr6_1:47137580-47137599 | None:intergenic | 30.0% | |
| TGACGAAAAAAGAACCTAAA+AGG | - | chr6_1:47137650-47137669 | None:intergenic | 30.0% | |
| !! | GGAATTTTTCACAGTTTGTT+TGG | - | chr6_1:47137814-47137833 | None:intergenic | 30.0% |
| TTCTCTTCATCAATTAGTTG+CGG | - | chr6_1:47137969-47137988 | None:intergenic | 30.0% | |
| ! | TTTGATGCAAAGAAAAGTGT+TGG | + | chr6_1:47137990-47138009 | Msa0886840:CDS | 30.0% |
| ! | CCATGAATATTTTCGTAAGA+AGG | - | chr6_1:47138161-47138180 | None:intergenic | 30.0% |
| CCTTCTTACGAAAATATTCA+TGG | + | chr6_1:47138158-47138177 | Msa0886840:CDS | 30.0% | |
| AATATTCATGGTGAAGTGAT+TGG | + | chr6_1:47138170-47138189 | Msa0886840:CDS | 30.0% | |
| AGTGATTGGTATTATCACTT+TGG | + | chr6_1:47138184-47138203 | Msa0886840:CDS | 30.0% | |
| GGAAGAAATACTAAAAACCA+AGG | - | chr6_1:47138268-47138287 | None:intergenic | 30.0% | |
| ! | ATTTCATTCAGTTTTCTGTG+CGG | - | chr6_1:47138289-47138308 | None:intergenic | 30.0% |
| AATATGTTGACGTTCATAAC+AGG | + | chr6_1:47138350-47138369 | Msa0886840:CDS | 30.0% | |
| GATACTATACACAAGTGATA+TGG | + | chr6_1:47138385-47138404 | Msa0886840:intron | 30.0% | |
| ! | CTGAGAAAATGCTTCATTTT+TGG | + | chr6_1:47138620-47138639 | Msa0886840:intron | 30.0% |
| ! | ATATAAGGCTGGAATTTTCA+TGG | - | chr6_1:47138823-47138842 | None:intergenic | 30.0% |
| TGGGCTATATTTCTTATGAT+GGG | - | chr6_1:47138983-47139002 | None:intergenic | 30.0% | |
| TTGGGCTATATTTCTTATGA+TGG | - | chr6_1:47138984-47139003 | None:intergenic | 30.0% | |
| TATATGCTTAATCTCGGATA+AGG | - | chr6_1:47139355-47139374 | None:intergenic | 30.0% | |
| AACAGCTATATGCTTAATCT+CGG | - | chr6_1:47139361-47139380 | None:intergenic | 30.0% | |
| ATTATTACAAAGGGTTTGAG+AGG | - | chr6_1:47139434-47139453 | None:intergenic | 30.0% | |
| TGTTGGAGAGTTTAGTAAAA+CGG | - | chr6_1:47139479-47139498 | None:intergenic | 30.0% | |
| ! | TTTTACTAAACTCTCCAACA+TGG | + | chr6_1:47139479-47139498 | Msa0886840:intron | 30.0% |
| !!! | TTGTTTGTTTTTAACCATCC+AGG | + | chr6_1:47139516-47139535 | Msa0886840:intron | 30.0% |
| !!! | TGTTTGTTTTTAACCATCCA+GGG | + | chr6_1:47139517-47139536 | Msa0886840:intron | 30.0% |
| AACTTCAAAGTTATCTTGAG+AGG | + | chr6_1:47139561-47139580 | Msa0886840:exon | 30.0% | |
| AAGTTATCTTGAGAGGAAAA+TGG | + | chr6_1:47139568-47139587 | Msa0886840:exon | 30.0% | |
| AAGCAACCCTTATATACTAA+AGG | - | chr6_1:47139627-47139646 | None:intergenic | 30.0% | |
| CAAGATCAAACGACTTAAAT+AGG | - | chr6_1:47139690-47139709 | None:intergenic | 30.0% | |
| CTCAAGAGCTATATAATAAC+TGG | + | chr6_1:47139825-47139844 | Msa0886840:three_prime_UTR | 30.0% | |
| CAAGAGCTATATAATAACTG+GGG | + | chr6_1:47139827-47139846 | Msa0886840:three_prime_UTR | 30.0% | |
| ATCTATCTGTCTATCTGGTT+CGG | - | chr6_1:47133820-47133839 | Msa0886830:intron | 35.0% | |
| CTGTTATCTATCTGTCTATC+TGG | - | chr6_1:47133825-47133844 | Msa0886830:intron | 35.0% | |
| AATGGTCAACGCATTCAAAA+TGG | - | chr6_1:47133871-47133890 | Msa0886830:intron | 35.0% | |
| ! | TGTTTTCTTGTTCTCTTTGC+CGG | + | chr6_1:47133969-47133988 | Msa0886840:five_prime_UTR | 35.0% |
| CACTACGTTCAAGAATTTCA+AGG | - | chr6_1:47134043-47134062 | None:intergenic | 35.0% | |
| CTTGAAATTCTTGAACGTAG+TGG | + | chr6_1:47134041-47134060 | Msa0886840:five_prime_UTR | 35.0% | |
| ATCACATACAGATACAGACA+CGG | - | chr6_1:47134432-47134451 | None:intergenic | 35.0% | |
| !!! | TGGTGTTGTTTTTTAACCAC+TGG | - | chr6_1:47134488-47134507 | None:intergenic | 35.0% |
| GAAGTAAAGTAACAAGAAGC+TGG | - | chr6_1:47134508-47134527 | None:intergenic | 35.0% | |
| !! | TCTCTGTAATGCTGTTTCTA+TGG | + | chr6_1:47134526-47134545 | Msa0886840:five_prime_UTR | 35.0% |
| ! | CTAAATATTTAGGGTCCGTT+TGG | + | chr6_1:47134755-47134774 | Msa0886840:intron | 35.0% |
| AAAATAAGCCCAAACCAAAC+AGG | + | chr6_1:47134923-47134942 | Msa0886840:intron | 35.0% | |
| AAATAAGCCCAAACCAAACA+GGG | + | chr6_1:47134924-47134943 | Msa0886840:intron | 35.0% | |
| AGCACAAACACTTACCATTA+AGG | - | chr6_1:47134950-47134969 | None:intergenic | 35.0% | |
| GATTTGAAAACTACTCTCTC+CGG | + | chr6_1:47134991-47135010 | Msa0886840:intron | 35.0% | |
| ATTGGACATTTGAAAGCCAA+TGG | - | chr6_1:47135350-47135369 | None:intergenic | 35.0% | |
| CTTTCAAATGTCCAATATGC+AGG | + | chr6_1:47135354-47135373 | Msa0886840:exon | 35.0% | |
| ATGTTACCCTCTTTCTTATC+CGG | + | chr6_1:47135661-47135680 | Msa0886840:CDS | 35.0% | |
| GTAGAATTTACCTTTCCAAC+CGG | - | chr6_1:47135683-47135702 | None:intergenic | 35.0% | |
| ATAGTACAGATGTTGTTCCA+TGG | + | chr6_1:47135706-47135725 | Msa0886840:intron | 35.0% | |
| ! | TTCGTTGGATAGGTAGTTTT+CGG | - | chr6_1:47135773-47135792 | None:intergenic | 35.0% |
| !! | CGAATATTTGTTTCAGGTTC+TGG | + | chr6_1:47135789-47135808 | Msa0886840:intron | 35.0% |
| !!! | TTGTTTTTTAGGCTGGGAAA+GGG | + | chr6_1:47135995-47136014 | Msa0886840:intron | 35.0% |
| GATGAGACAACAATTATCAG+TGG | + | chr6_1:47136033-47136052 | Msa0886840:CDS | 35.0% | |
| ! | AATTGCAGCACTTACCTTTT+CGG | - | chr6_1:47136073-47136092 | None:intergenic | 35.0% |
| GGTTCACAATTGATTGTGAA+AGG | - | chr6_1:47136098-47136117 | None:intergenic | 35.0% | |
| CACTAGTTAAAACTCAAGAC+AGG | - | chr6_1:47136203-47136222 | None:intergenic | 35.0% | |
| AGCATCAATGATGTTGGAAA+TGG | + | chr6_1:47136246-47136265 | Msa0886840:intron | 35.0% | |
| ATACATTCTCGTGCATACTT+GGG | + | chr6_1:47136367-47136386 | Msa0886840:intron | 35.0% | |
| CTTCCAACAAATGACTGAAT+TGG | + | chr6_1:47136632-47136651 | Msa0886840:intron | 35.0% | |
| ! | TCATCTAGTGGGTATTCATA+TGG | - | chr6_1:47136958-47136977 | None:intergenic | 35.0% |
| AAAGAGTGATGACTTTGTAG+GGG | - | chr6_1:47137160-47137179 | None:intergenic | 35.0% | |
| GTAAAGAGTGATGACTTTGT+AGG | - | chr6_1:47137162-47137181 | None:intergenic | 35.0% | |
| TTTACCAAGAGCAATGACTT+GGG | + | chr6_1:47137177-47137196 | Msa0886840:intron | 35.0% | |
| AACACCAATTACTAGACCAT+TGG | + | chr6_1:47137346-47137365 | Msa0886840:intron | 35.0% | |
| ATATATCTTACATGTAGGGG+TGG | - | chr6_1:47137409-47137428 | None:intergenic | 35.0% | |
| ! | TAGGCAGGATAAAAGTTTTC+AGG | - | chr6_1:47137484-47137503 | None:intergenic | 35.0% |
| TTTGAGAATAGACAGGAACT+CGG | - | chr6_1:47137554-47137573 | None:intergenic | 35.0% | |
| TCGTTCAGTATATCGTATAG+AGG | - | chr6_1:47137882-47137901 | None:intergenic | 35.0% | |
| TATACTGAACGAGTTCCAAA+AGG | + | chr6_1:47137890-47137909 | Msa0886840:CDS | 35.0% | |
| ATACTGAACGAGTTCCAAAA+GGG | + | chr6_1:47137891-47137910 | Msa0886840:CDS | 35.0% | |
| ! | CCATATGACTATTTCCCTTT+TGG | - | chr6_1:47137908-47137927 | None:intergenic | 35.0% |
| CCAAAAGGGAAATAGTCATA+TGG | + | chr6_1:47137905-47137924 | Msa0886840:CDS | 35.0% | |
| !! | ATGCAAAGAAAAGTGTTGGT+GGG | + | chr6_1:47137994-47138013 | Msa0886840:CDS | 35.0% |
| ! | TTATTGCCAGTAAGCTTTGA+AGG | - | chr6_1:47138095-47138114 | None:intergenic | 35.0% |
| TGAAATTATCTCTTGGATGC+AGG | + | chr6_1:47138303-47138322 | Msa0886840:intron | 35.0% | |
| !!! | CCTTTTTTTCAGTCGACTTT+CGG | - | chr6_1:47138516-47138535 | None:intergenic | 35.0% |
| CGAAAGTCGACTGAAAAAAA+GGG | + | chr6_1:47138514-47138533 | Msa0886840:CDS | 35.0% | |
| GAAAAAAAGGGATCAGTAAG+TGG | + | chr6_1:47138526-47138545 | Msa0886840:intron | 35.0% | |
| ! | AAGCATTTTCTCAGCTCAAT+AGG | - | chr6_1:47138614-47138633 | None:intergenic | 35.0% |
| TTTCGTGTTTCTCTGTTGTA+TGG | + | chr6_1:47138660-47138679 | Msa0886840:intron | 35.0% | |
| !! | CAATGCCTTTCTGGAATATA+AGG | - | chr6_1:47138838-47138857 | None:intergenic | 35.0% |
| TCATGTGACTATGTGATGTT+GGG | - | chr6_1:47139032-47139051 | None:intergenic | 35.0% | |
| ! | ATACTGACTAAGTCTCAAGA+GGG | + | chr6_1:47139252-47139271 | Msa0886840:intron | 35.0% |
| TTGTATTAGCTATCTGATGC+TGG | + | chr6_1:47139648-47139667 | Msa0886840:three_prime_UTR | 35.0% | |
| AGTTGAAAAGTGGGAAAGGA+AGG | + | chr6_1:47133729-47133748 | Msa0886840:five_prime_UTR | 40.0% | |
| ! | TCTATCTGTCTATCTGGTTC+GGG | - | chr6_1:47133819-47133838 | Msa0886830:intron | 40.0% |
| AGACATACACGTATGACGTA+TGG | + | chr6_1:47133843-47133862 | Msa0886840:five_prime_UTR | 40.0% | |
| AGCAAGGTGGTTACTACTAA+TGG | - | chr6_1:47133889-47133908 | Msa0886830:intron | 40.0% | |
| ! | TACCTTTTGGATCTGCAACA+TGG | + | chr6_1:47133925-47133944 | Msa0886840:five_prime_UTR | 40.0% |
| ATCCATGTTGCAGATCCAAA+AGG | - | chr6_1:47133930-47133949 | Msa0886830:intron | 40.0% | |
| !!! | CCAGCTTGTTTTTTCTGAGA+AGG | - | chr6_1:47134071-47134090 | None:intergenic | 40.0% |
| CCTTCTCAGAAAAAACAAGC+TGG | + | chr6_1:47134068-47134087 | Msa0886840:five_prime_UTR | 40.0% | |
| ACTATTGGGTTAAGAGCAAG+AGG | - | chr6_1:47134106-47134125 | None:intergenic | 40.0% | |
| !! | GTAATTACAAGTGTCGGTGT+CGG | - | chr6_1:47134340-47134359 | None:intergenic | 40.0% |
| !! | CTGTAATGCTGTTTCTATGG+AGG | + | chr6_1:47134529-47134548 | Msa0886840:five_prime_UTR | 40.0% |
| ! | ATTAAGGCCCTGTTTGGTTT+GGG | - | chr6_1:47134934-47134953 | None:intergenic | 40.0% |
| ATTCTGATAAAAAGGGACGG+TGG | + | chr6_1:47135250-47135269 | Msa0886840:intron | 40.0% | |
| TTCTGATAAAAAGGGACGGT+GGG | + | chr6_1:47135251-47135270 | Msa0886840:intron | 40.0% | |
| CAAAGAGTTAGGCAGGTTTA+GGG | - | chr6_1:47135323-47135342 | None:intergenic | 40.0% | |
| TCAAAGAGTTAGGCAGGTTT+AGG | - | chr6_1:47135324-47135343 | None:intergenic | 40.0% | |
| TTCCAACCGGATAAGAAAGA+GGG | - | chr6_1:47135670-47135689 | None:intergenic | 40.0% | |
| TTTCCAACCGGATAAGAAAG+AGG | - | chr6_1:47135671-47135690 | None:intergenic | 40.0% | |
| TCTTTCTTATCCGGTTGGAA+AGG | + | chr6_1:47135670-47135689 | Msa0886840:CDS | 40.0% | |
| AAAGCTCTTGTCTCCATTCA+TGG | + | chr6_1:47135859-47135878 | Msa0886840:CDS | 40.0% | |
| TTATACCTCCTTGCCATGAA+TGG | - | chr6_1:47135875-47135894 | None:intergenic | 40.0% | |
| !!! | AACCTGCTTGTTTTTTAGGC+TGG | + | chr6_1:47135988-47136007 | Msa0886840:intron | 40.0% |
| !!! | ACCTGCTTGTTTTTTAGGCT+GGG | + | chr6_1:47135989-47136008 | Msa0886840:intron | 40.0% |
| !!! | CTTGTTTTTTAGGCTGGGAA+AGG | + | chr6_1:47135994-47136013 | Msa0886840:intron | 40.0% |
| !!! | TGTTTTTTAGGCTGGGAAAG+GGG | + | chr6_1:47135996-47136015 | Msa0886840:intron | 40.0% |
| ! | AGCACTTGATTTGACCGAAA+AGG | + | chr6_1:47136056-47136075 | Msa0886840:CDS | 40.0% |
| TTGGAAATGGAATAGGGAAC+TGG | + | chr6_1:47136259-47136278 | Msa0886840:intron | 40.0% | |
| !!! | AGTTTTGGAATAACACCGCA+TGG | - | chr6_1:47136310-47136329 | None:intergenic | 40.0% |
| ACATGATCACTGGAAGTGAA+CGG | - | chr6_1:47136335-47136354 | None:intergenic | 40.0% | |
| GCACGAGAATGTATGACTAA+CGG | - | chr6_1:47136361-47136380 | None:intergenic | 40.0% | |
| CATACATTCTCGTGCATACT+TGG | + | chr6_1:47136366-47136385 | Msa0886840:intron | 40.0% | |
| ! | CTTGGGTTCTCTCTATGTTT+TGG | + | chr6_1:47136384-47136403 | Msa0886840:intron | 40.0% |
| !! | TGTTTTTGAACAGACTGCTG+AGG | + | chr6_1:47136506-47136525 | Msa0886840:intron | 40.0% |
| GAGCCAATTCAGTCATTTGT+TGG | - | chr6_1:47136638-47136657 | None:intergenic | 40.0% | |
| CGTCCATGATAGAATTTGTG+CGG | + | chr6_1:47136668-47136687 | Msa0886840:intron | 40.0% | |
| ATGCCGCACAAATTCTATCA+TGG | - | chr6_1:47136674-47136693 | None:intergenic | 40.0% | |
| CGATCATGGTAGAATTTGTG+CGG | + | chr6_1:47136747-47136766 | Msa0886840:intron | 40.0% | |
| ! | TGGGTATTCATATGGTGGAA+CGG | - | chr6_1:47136950-47136969 | None:intergenic | 40.0% |
| ! | TCTAGTGGGTATTCATATGG+TGG | - | chr6_1:47136955-47136974 | None:intergenic | 40.0% |
| GGTTGAAACGATCATCTAGT+GGG | - | chr6_1:47136969-47136988 | None:intergenic | 40.0% | |
| TGGTTGAAACGATCATCTAG+TGG | - | chr6_1:47136970-47136989 | None:intergenic | 40.0% | |
| CTAGATGATCGTTTCAACCA+TGG | + | chr6_1:47136970-47136989 | Msa0886840:CDS | 40.0% | |
| GAACATGCTCAATCTATCAC+AGG | + | chr6_1:47137038-47137057 | Msa0886840:intron | 40.0% | |
| CTTTACCAAGAGCAATGACT+TGG | + | chr6_1:47137176-47137195 | Msa0886840:intron | 40.0% | |
| TTACCAAGAGCAATGACTTG+GGG | + | chr6_1:47137178-47137197 | Msa0886840:intron | 40.0% | |
| !! | TTGGGCCTAAATGATTTGCT+CGG | - | chr6_1:47137219-47137238 | None:intergenic | 40.0% |
| ! | GTTGTTTCCCTCAAACTAGT+AGG | + | chr6_1:47137381-47137400 | Msa0886840:intron | 40.0% |
| TATCCTGCCTATCTCAAATC+AGG | + | chr6_1:47137493-47137512 | Msa0886840:intron | 40.0% | |
| ATCCTGCCTATCTCAAATCA+GGG | + | chr6_1:47137494-47137513 | Msa0886840:intron | 40.0% | |
| !! | CTGGGATTTTGAGAATAGAC+AGG | - | chr6_1:47137561-47137580 | None:intergenic | 40.0% |
| CTGTCTATTCTCAAAATCCC+AGG | + | chr6_1:47137559-47137578 | Msa0886840:CDS | 40.0% | |
| TATCTATCCGGAGAATACCA+CGG | + | chr6_1:47137754-47137773 | Msa0886840:CDS | 40.0% | |
| ! | TCGTATAGAGGCATATCAGA+TGG | - | chr6_1:47137870-47137889 | None:intergenic | 40.0% |
| !! | GATGCAAAGAAAAGTGTTGG+TGG | + | chr6_1:47137993-47138012 | Msa0886840:CDS | 40.0% |
| !! | TGCAAAGAAAAGTGTTGGTG+GGG | + | chr6_1:47137995-47138014 | Msa0886840:CDS | 40.0% |
| TACTCCATTGCTACAAGAAC+TGG | + | chr6_1:47138031-47138050 | Msa0886840:CDS | 40.0% | |
| GAATCCAGTTCTTGTAGCAA+TGG | - | chr6_1:47138038-47138057 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGCAGAGTAGTGA+TGG | + | chr6_1:47138122-47138141 | Msa0886840:CDS | 40.0% |
| AGTAGTGATGGCACATTAAG+CGG | + | chr6_1:47138134-47138153 | Msa0886840:CDS | 40.0% | |
| TTTAGATATGTGCATGCCCT+TGG | + | chr6_1:47138248-47138267 | Msa0886840:intron | 40.0% | |
| TTGGATGCAGGAAGAAATTG+TGG | + | chr6_1:47138315-47138334 | Msa0886840:intron | 40.0% | |
| CCGAAAGTCGACTGAAAAAA+AGG | + | chr6_1:47138513-47138532 | Msa0886840:CDS | 40.0% | |
| !! | AATGCTTCATTTTTGGGCCT+CGG | + | chr6_1:47138627-47138646 | Msa0886840:intron | 40.0% |
| ! | TCCAGCCTTATATTCCAGAA+AGG | + | chr6_1:47138830-47138849 | Msa0886840:intron | 40.0% |
| ATGTTGGGCTATGTCCATTA+TGG | - | chr6_1:47139017-47139036 | None:intergenic | 40.0% | |
| CTCATGTGACTATGTGATGT+TGG | - | chr6_1:47139033-47139052 | None:intergenic | 40.0% | |
| CACATAGTCACATGAGAGAA+AGG | + | chr6_1:47139037-47139056 | Msa0886840:intron | 40.0% | |
| AGAAAGGTGACAGCTTAAGT+TGG | + | chr6_1:47139053-47139072 | Msa0886840:intron | 40.0% | |
| GAAAGGTGACAGCTTAAGTT+GGG | + | chr6_1:47139054-47139073 | Msa0886840:intron | 40.0% | |
| GCATACCGGGAAAAAAATCT+CGG | + | chr6_1:47139118-47139137 | Msa0886840:intron | 40.0% | |
| TATCACGTGTTTATCCTGTG+GGG | - | chr6_1:47139235-47139254 | None:intergenic | 40.0% | |
| GTATCACGTGTTTATCCTGT+GGG | - | chr6_1:47139236-47139255 | None:intergenic | 40.0% | |
| AGTATCACGTGTTTATCCTG+TGG | - | chr6_1:47139237-47139256 | None:intergenic | 40.0% | |
| ! | GATACTGACTAAGTCTCAAG+AGG | + | chr6_1:47139251-47139270 | Msa0886840:intron | 40.0% |
| !!! | TTGTTTTTAACCATCCAGGG+AGG | + | chr6_1:47139520-47139539 | Msa0886840:intron | 40.0% |
| AAGTTTGCACTGCCTTACTA+TGG | - | chr6_1:47139546-47139565 | None:intergenic | 40.0% | |
| CTATCTGATGCTGGAAAACA+AGG | + | chr6_1:47139657-47139676 | Msa0886840:three_prime_UTR | 40.0% | |
| TGATGCTGGAAAACAAGGAA+TGG | + | chr6_1:47139662-47139681 | Msa0886840:three_prime_UTR | 40.0% | |
| GATGCTGGAAAACAAGGAAT+GGG | + | chr6_1:47139663-47139682 | Msa0886840:three_prime_UTR | 40.0% | |
| ATGCTGGAAAACAAGGAATG+GGG | + | chr6_1:47139664-47139683 | Msa0886840:three_prime_UTR | 40.0% | |
| !! | ACCAACGAAGGCATACCTTT+TGG | + | chr6_1:47133912-47133931 | Msa0886840:five_prime_UTR | 45.0% |
| ! | TCCAAAAGGTATGCCTTCGT+TGG | - | chr6_1:47133916-47133935 | Msa0886830:intron | 45.0% |
| TATGAAACACGGACACTCCT+CGG | + | chr6_1:47134154-47134173 | Msa0886840:intron | 45.0% | |
| TCCTCGAATTAGACGTGTTC+CGG | + | chr6_1:47134301-47134320 | Msa0886840:intron | 45.0% | |
| ! | TATTAGTTGTGTCGGCGTGT+CGG | + | chr6_1:47134385-47134404 | Msa0886840:intron | 45.0% |
| CATTAAGGCCCTGTTTGGTT+TGG | - | chr6_1:47134935-47134954 | None:intergenic | 45.0% | |
| CAAACCAAACAGGGCCTTAA+TGG | + | chr6_1:47134933-47134952 | Msa0886840:intron | 45.0% | |
| CTTACCATTAAGGCCCTGTT+TGG | - | chr6_1:47134940-47134959 | None:intergenic | 45.0% | |
| CCAATGGCTGTCAAAGAGTT+AGG | - | chr6_1:47135334-47135353 | None:intergenic | 45.0% | |
| CCTAACTCTTTGACAGCCAT+TGG | + | chr6_1:47135331-47135350 | Msa0886840:intron | 45.0% | |
| TAGAGGAAGAGCCTGCATAT+TGG | - | chr6_1:47135368-47135387 | None:intergenic | 45.0% | |
| !! | TCGCTATCTTTGCTGTTCAC+TGG | + | chr6_1:47135473-47135492 | Msa0886840:intron | 45.0% |
| AGTAGATATGGTCTCGCTGT+AGG | + | chr6_1:47135599-47135618 | Msa0886840:CDS | 45.0% | |
| ! | CTGTAGGTGCCAACTTTTCA+TGG | + | chr6_1:47135615-47135634 | Msa0886840:CDS | 45.0% |
| ACGCACAAGCCATGAAAAGT+TGG | - | chr6_1:47135627-47135646 | None:intergenic | 45.0% | |
| TACCCTCTTTCTTATCCGGT+TGG | + | chr6_1:47135665-47135684 | Msa0886840:CDS | 45.0% | |
| !! | TCAGGTTCTGGATTGTGTAC+TGG | + | chr6_1:47135801-47135820 | Msa0886840:intron | 45.0% |
| !! | CAGGTTCTGGATTGTGTACT+GGG | + | chr6_1:47135802-47135821 | Msa0886840:intron | 45.0% |
| !! | AGGTTCTGGATTGTGTACTG+GGG | + | chr6_1:47135803-47135822 | Msa0886840:intron | 45.0% |
| !! | GGAACGACGAGGCTTTATTT+AGG | + | chr6_1:47135824-47135843 | Msa0886840:CDS | 45.0% |
| TCTTGTCTCCATTCATGGCA+AGG | + | chr6_1:47135864-47135883 | Msa0886840:CDS | 45.0% | |
| TCCCAGCCTAAAAAACAAGC+AGG | - | chr6_1:47135993-47136012 | None:intergenic | 45.0% | |
| !!! | GTTTTTTAGGCTGGGAAAGG+GGG | + | chr6_1:47135997-47136016 | Msa0886840:intron | 45.0% |
| !! | CTGGGAAGCATCAATGATGT+TGG | + | chr6_1:47136240-47136259 | Msa0886840:intron | 45.0% |
| ! | TGGAAGTGAACGGTGAGTTT+TGG | - | chr6_1:47136325-47136344 | None:intergenic | 45.0% |
| CTAACGGAACACATGATCAC+TGG | - | chr6_1:47136345-47136364 | None:intergenic | 45.0% | |
| ! | TTTTGAACAGACTGCTGAGG+AGG | + | chr6_1:47136509-47136528 | Msa0886840:intron | 45.0% |
| CGAGCATACTTGCAATGGAA+CGG | - | chr6_1:47136713-47136732 | None:intergenic | 45.0% | |
| !! | AGGAACGGTGTTGTTCACAA+AGG | - | chr6_1:47136777-47136796 | None:intergenic | 45.0% |
| TGGTCGCAATGATCATGTAG+CGG | - | chr6_1:47136891-47136910 | None:intergenic | 45.0% | |
| CTACATGATCATTGCGACCA+TGG | + | chr6_1:47136891-47136910 | Msa0886840:CDS | 45.0% | |
| ATGCCTCACAAGTTCTACCA+TGG | - | chr6_1:47136911-47136930 | None:intergenic | 45.0% | |
| CAACCATGGTAGAACTTGTG+AGG | + | chr6_1:47136984-47137003 | Msa0886840:CDS | 45.0% | |
| ATGCCTCACAAGTTCTACCA+TGG | - | chr6_1:47136911-47136930 | None:intergenic | 45.0% | |
| TGAGACGGTACAGTTGACAA+GGG | - | chr6_1:47137014-47137033 | None:intergenic | 45.0% | |
| CACTTAGAAGGGATAATCCC+CGG | - | chr6_1:47137116-47137135 | None:intergenic | 45.0% | |
| GCTCATGTGAGCACTTAGAA+GGG | - | chr6_1:47137127-47137146 | None:intergenic | 45.0% | |
| TGCTCATGTGAGCACTTAGA+AGG | - | chr6_1:47137128-47137147 | None:intergenic | 45.0% | |
| ! | TACCAAGAGCAATGACTTGG+GGG | + | chr6_1:47137179-47137198 | Msa0886840:intron | 45.0% |
| CTGGACCGAGCAAATCATTT+AGG | + | chr6_1:47137211-47137230 | Msa0886840:intron | 45.0% | |
| ! | GGTGGATCCTACTAGTTTGA+GGG | - | chr6_1:47137391-47137410 | None:intergenic | 45.0% |
| ! | ATGCCTCCCTGATTTGAGAT+AGG | - | chr6_1:47137503-47137522 | None:intergenic | 45.0% |
| ! | ATCTCAAATCAGGGAGGCAT+TGG | + | chr6_1:47137503-47137522 | Msa0886840:intron | 45.0% |
| !! | TCTCAAATCAGGGAGGCATT+GGG | + | chr6_1:47137504-47137523 | Msa0886840:intron | 45.0% |
| ! | GATAGATACTGCACTGACAG+GGG | - | chr6_1:47137742-47137761 | None:intergenic | 45.0% |
| ! | GGATAGATACTGCACTGACA+GGG | - | chr6_1:47137743-47137762 | None:intergenic | 45.0% |
| CTGTCAGTGCAGTATCTATC+CGG | + | chr6_1:47137742-47137761 | Msa0886840:CDS | 45.0% | |
| AAACACACCGTGGTATTCTC+CGG | - | chr6_1:47137764-47137783 | None:intergenic | 45.0% | |
| GTTGTGAAGACTACCGGAAA+AGG | + | chr6_1:47137933-47137952 | Msa0886840:CDS | 45.0% | |
| ! | CGGAGTTTCTTTGCCTTTTC+CGG | - | chr6_1:47137949-47137968 | None:intergenic | 45.0% |
| GTCAAGCCTTCAAAGCTTAC+TGG | + | chr6_1:47138086-47138105 | Msa0886840:CDS | 45.0% | |
| ! | TCAGTCGACTTTCGGATTGA+TGG | - | chr6_1:47138508-47138527 | None:intergenic | 45.0% |
| !! | ATGCTTCATTTTTGGGCCTC+GGG | + | chr6_1:47138628-47138647 | Msa0886840:intron | 45.0% |
| !! | GCCTTTCTGGAATATAAGGC+TGG | - | chr6_1:47138834-47138853 | None:intergenic | 45.0% |
| TTGGACAAGCAATGCCTTTC+TGG | - | chr6_1:47138847-47138866 | None:intergenic | 45.0% | |
| !! | CATTATGGCAGAGGGGTATT+GGG | - | chr6_1:47139002-47139021 | None:intergenic | 45.0% |
| CTATGTCCATTATGGCAGAG+GGG | - | chr6_1:47139009-47139028 | None:intergenic | 45.0% | |
| GCTATGTCCATTATGGCAGA+GGG | - | chr6_1:47139010-47139029 | None:intergenic | 45.0% | |
| TACCGGGAAAAAAATCTCGG+AGG | + | chr6_1:47139121-47139140 | Msa0886840:intron | 45.0% | |
| !!! | CTCCTCCGAGATTTTTTTCC+CGG | - | chr6_1:47139126-47139145 | None:intergenic | 45.0% |
| TCTCTTGTCATGACCCGTAA+AGG | + | chr6_1:47139148-47139167 | Msa0886840:intron | 45.0% | |
| TGTCATGACCCGTAAAGGAA+CGG | + | chr6_1:47139153-47139172 | Msa0886840:intron | 45.0% | |
| ACTAGACTCCGTTCCTTTAC+GGG | - | chr6_1:47139164-47139183 | None:intergenic | 45.0% | |
| CACTAGACTCCGTTCCTTTA+CGG | - | chr6_1:47139165-47139184 | None:intergenic | 45.0% | |
| ! | ACCCATATCCGAGATGGATT+CGG | + | chr6_1:47139185-47139204 | Msa0886840:intron | 45.0% |
| TCCGAATCCATCTCGGATAT+GGG | - | chr6_1:47139189-47139208 | None:intergenic | 45.0% | |
| !! | AGGCCATTACGCTTTTGACT+AGG | + | chr6_1:47139208-47139227 | Msa0886840:intron | 45.0% |
| ! | GGACCTAGTCAAAAGCGTAA+TGG | - | chr6_1:47139214-47139233 | None:intergenic | 45.0% |
| CTAAGTCTCAAGAGGGTAAG+CGG | + | chr6_1:47139259-47139278 | Msa0886840:intron | 45.0% | |
| TAAGTCTCAAGAGGGTAAGC+GGG | + | chr6_1:47139260-47139279 | Msa0886840:intron | 45.0% | |
| AAGGACGGAATCACGGATAA+AGG | + | chr6_1:47139284-47139303 | Msa0886840:intron | 45.0% | |
| TACATGCCACGATTCTTGGA+AGG | + | chr6_1:47139308-47139327 | Msa0886840:intron | 45.0% | |
| ACATGCCACGATTCTTGGAA+GGG | + | chr6_1:47139309-47139328 | Msa0886840:intron | 45.0% | |
| !!! | TTTTCTTTTTATAAATAATT+AGG | + | chr6_1:47137680-47137699 | Msa0886840:intron | 5.0% |
| !! | CTGTCTATCTGGTTCGGGTT+AGG | - | chr6_1:47133814-47133833 | Msa0886830:intron | 50.0% |
| ! | GCAACATGGATTGCTTACGC+TGG | + | chr6_1:47133939-47133958 | Msa0886840:five_prime_UTR | 50.0% |
| CATGAGACCAAGTGTGAGAC+CGG | - | chr6_1:47134003-47134022 | None:intergenic | 50.0% | |
| ACCGGAACACGTCTAATTCG+AGG | - | chr6_1:47134305-47134324 | None:intergenic | 50.0% | |
| ACAGATACAGACACGGACAC+CGG | - | chr6_1:47134425-47134444 | None:intergenic | 50.0% | |
| TGCAGCGATCATTCTTCCAG+TGG | + | chr6_1:47134469-47134488 | Msa0886840:intron | 50.0% | |
| TGGCTGTCAAAGAGTTAGGC+AGG | - | chr6_1:47135330-47135349 | None:intergenic | 50.0% | |
| TGTTCCATGGCATCAAGCTC+TGG | + | chr6_1:47135719-47135738 | Msa0886840:intron | 50.0% | |
| ATAGCCAGAGCTTGATGCCA+TGG | - | chr6_1:47135726-47135745 | None:intergenic | 50.0% | |
| TGTCTCCATTCATGGCAAGG+AGG | + | chr6_1:47135867-47135886 | Msa0886840:CDS | 50.0% | |
| TGTCTTCTATTTGGGCACGC+TGG | + | chr6_1:47136221-47136240 | Msa0886840:intron | 50.0% | |
| GTCTTCTATTTGGGCACGCT+GGG | + | chr6_1:47136222-47136241 | Msa0886840:intron | 50.0% | |
| TGGAACGGAGCTGTTCACAA+AGG | - | chr6_1:47136698-47136717 | None:intergenic | 50.0% | |
| AGTGGCGAGCATACTTGCAA+TGG | - | chr6_1:47136718-47136737 | None:intergenic | 50.0% | |
| CCATGATCGAGCTGATTGAG+TGG | - | chr6_1:47136736-47136755 | None:intergenic | 50.0% | |
| CCACTCAATCAGCTCGATCA+TGG | + | chr6_1:47136733-47136752 | Msa0886840:intron | 50.0% | |
| CGGGCATATCTGAGAAGGAA+CGG | - | chr6_1:47136792-47136811 | None:intergenic | 50.0% | |
| TGGTAGCTACGACTATGTGG+CGG | - | chr6_1:47136812-47136831 | None:intergenic | 50.0% | |
| CCATGGTAGCTACGACTATG+TGG | - | chr6_1:47136815-47136834 | None:intergenic | 50.0% | |
| CCACATAGTCGTAGCTACCA+TGG | + | chr6_1:47136812-47136831 | Msa0886840:intron | 50.0% | |
| CTACCATGGCAGAACTTGTG+AGG | + | chr6_1:47136826-47136845 | Msa0886840:intron | 50.0% | |
| ATGCCTCACAAGTTCTGCCA+TGG | - | chr6_1:47136832-47136851 | None:intergenic | 50.0% | |
| TAGAACGGGGCAGTTCACAA+AGG | - | chr6_1:47136856-47136875 | None:intergenic | 50.0% | |
| GGCATACCTGTGATAGAACG+GGG | - | chr6_1:47136869-47136888 | None:intergenic | 50.0% | |
| GGGCATACCTGTGATAGAAC+GGG | - | chr6_1:47136870-47136889 | None:intergenic | 50.0% | |
| CGGGCATACCTGTGATAGAA+CGG | - | chr6_1:47136871-47136890 | None:intergenic | 50.0% | |
| GGTCGCAATGATCATGTAGC+GGG | - | chr6_1:47136890-47136909 | None:intergenic | 50.0% | |
| CGACCATGGTAGAACTTGTG+AGG | + | chr6_1:47136905-47136924 | Msa0886840:CDS | 50.0% | |
| !! | TGGAACGGTGCTGTTCACAA+GGG | - | chr6_1:47136935-47136954 | None:intergenic | 50.0% |
| GTGAGACGGTACAGTTGACA+AGG | - | chr6_1:47137015-47137034 | None:intergenic | 50.0% | |
| TGAGCATGTTCGCAGTGAGA+CGG | - | chr6_1:47137029-47137048 | None:intergenic | 50.0% | |
| GAGGAACATGTTCGTACCAG+TGG | - | chr6_1:47137070-47137089 | None:intergenic | 50.0% | |
| GTGATGACTTTGTAGGGGTG+AGG | - | chr6_1:47137155-47137174 | None:intergenic | 50.0% | |
| ! | ACCAAGAGCAATGACTTGGG+GGG | + | chr6_1:47137180-47137199 | Msa0886840:intron | 50.0% |
| ! | GGGTGGATCCTACTAGTTTG+AGG | - | chr6_1:47137392-47137411 | None:intergenic | 50.0% |
| ! | CTCCCTGATTTGAGATAGGC+AGG | - | chr6_1:47137499-47137518 | None:intergenic | 50.0% |
| CTGCCTATCTCAAATCAGGG+AGG | + | chr6_1:47137497-47137516 | Msa0886840:intron | 50.0% | |
| TTGGGAAAGATTCTTGCCCG+CGG | + | chr6_1:47137522-47137541 | Msa0886840:CDS | 50.0% | |
| ! | CGGATAGATACTGCACTGAC+AGG | - | chr6_1:47137744-47137763 | None:intergenic | 50.0% |
| GCTGCTGTTGTGAAGACTAC+CGG | + | chr6_1:47137927-47137946 | Msa0886840:CDS | 50.0% | |
| AGTTGCAGCTGCTTCCTCAA+TGG | + | chr6_1:47138474-47138493 | Msa0886840:CDS | 50.0% | |
| CACGAAAAGTTCAAGACCCG+AGG | - | chr6_1:47138647-47138666 | None:intergenic | 50.0% | |
| ! | CCATTATGGCAGAGGGGTAT+TGG | - | chr6_1:47139003-47139022 | None:intergenic | 50.0% |
| CCAATACCCCTCTGCCATAA+TGG | + | chr6_1:47139000-47139019 | Msa0886840:intron | 50.0% | |
| GGCTATGTCCATTATGGCAG+AGG | - | chr6_1:47139011-47139030 | None:intergenic | 50.0% | |
| !! | GGTGACAGCTTAAGTTGGGA+CGG | + | chr6_1:47139058-47139077 | Msa0886840:intron | 50.0% |
| CGGGAAAAAAATCTCGGAGG+AGG | + | chr6_1:47139124-47139143 | Msa0886840:intron | 50.0% | |
| CTAGTGACCCATATCCGAGA+TGG | + | chr6_1:47139179-47139198 | Msa0886840:intron | 50.0% | |
| CTCCGAATCCATCTCGGATA+TGG | - | chr6_1:47139190-47139209 | None:intergenic | 50.0% | |
| ! | CATATCCGAGATGGATTCGG+AGG | + | chr6_1:47139188-47139207 | Msa0886840:intron | 50.0% |
| AATGGCCTCCGAATCCATCT+CGG | - | chr6_1:47139196-47139215 | None:intergenic | 50.0% | |
| AGGCTACATGCCACGATTCT+TGG | + | chr6_1:47139304-47139323 | Msa0886840:intron | 50.0% | |
| !! | CTGGTTCGGGTTAGGATCCA+AGG | - | chr6_1:47133806-47133825 | Msa0886830:intron | 55.0% |
| ! | CTTCGTTGGTGAGAGCAAGG+TGG | - | chr6_1:47133902-47133921 | Msa0886830:intron | 55.0% |
| CACCTTGCTCTCACCAACGA+AGG | + | chr6_1:47133900-47133919 | Msa0886840:five_prime_UTR | 55.0% | |
| ! | TGCCTTCGTTGGTGAGAGCA+AGG | - | chr6_1:47133905-47133924 | Msa0886830:intron | 55.0% |
| CTCTTTGCCGGAGTCATGTC+CGG | + | chr6_1:47133981-47134000 | Msa0886840:five_prime_UTR | 55.0% | |
| TGTGAGACCGGACATGACTC+CGG | - | chr6_1:47133991-47134010 | None:intergenic | 55.0% | |
| GTCATGTCCGGTCTCACACT+TGG | + | chr6_1:47133993-47134012 | Msa0886840:five_prime_UTR | 55.0% | |
| ACACGGACACTCCTCGGATT+AGG | + | chr6_1:47134160-47134179 | Msa0886840:intron | 55.0% | |
| TGTCGGACCGTGTACAACAC+CGG | - | chr6_1:47134192-47134211 | None:intergenic | 55.0% | |
| TGTCGGACATGACACGACAC+CGG | - | chr6_1:47134323-47134342 | None:intergenic | 55.0% | |
| TTGTGTACTGGGGAACGACG+AGG | + | chr6_1:47135813-47135832 | Msa0886840:CDS | 55.0% | |
| !! | TGTGGCGGGCATATCTGAGA+AGG | - | chr6_1:47136797-47136816 | None:intergenic | 55.0% |
| GGTAGCTACGACTATGTGGC+GGG | - | chr6_1:47136811-47136830 | None:intergenic | 55.0% | |
| GAACTGCCCCGTTCTATCAC+AGG | + | chr6_1:47136860-47136879 | Msa0886840:intron | 55.0% | |
| !! | GTGGAACGGTGCTGTTCACA+AGG | - | chr6_1:47136936-47136955 | None:intergenic | 55.0% |
| CTATCACAGGCACTCACCAC+TGG | + | chr6_1:47137051-47137070 | Msa0886840:intron | 55.0% | |
| TGGGAAAGATTCTTGCCCGC+GGG | + | chr6_1:47137523-47137542 | Msa0886840:CDS | 55.0% | |
| CTGACAGGGGTCTCTGATTC+AGG | - | chr6_1:47137729-47137748 | None:intergenic | 55.0% | |
| ! | TGATGGAGCTCGTGCCATTG+AGG | - | chr6_1:47138491-47138510 | None:intergenic | 55.0% |
| GGTCGAATTGACCACGTGCT+CGG | + | chr6_1:47139079-47139098 | Msa0886840:intron | 55.0% | |
| !! | GCTTTTGACTAGGTCCCCAC+AGG | + | chr6_1:47139218-47139237 | Msa0886840:intron | 55.0% |
| CTCAAGAGGGTAAGCGGGAA+AGG | + | chr6_1:47139265-47139284 | Msa0886840:intron | 55.0% | |
| AGAGGGTAAGCGGGAAAGGA+CGG | + | chr6_1:47139269-47139288 | Msa0886840:intron | 55.0% | |
| AGCGGGAAAGGACGGAATCA+CGG | + | chr6_1:47139277-47139296 | Msa0886840:intron | 55.0% | |
| TGCCACGATTCTTGGAAGGG+CGG | + | chr6_1:47139312-47139331 | Msa0886840:intron | 55.0% | |
| TTCCGCCCTTCCAAGAATCG+TGG | - | chr6_1:47139317-47139336 | None:intergenic | 55.0% | |
| CTTACTATGGCCTCCCTGGA+TGG | - | chr6_1:47139533-47139552 | None:intergenic | 55.0% | |
| CATCCAGGGAGGCCATAGTA+AGG | + | chr6_1:47139531-47139550 | Msa0886840:intron | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr6_1:47134170-47134189 | Msa0886840:intron | 60.0% |
| !! | GCGTGTCCCGGTGTTGTACA+CGG | + | chr6_1:47134182-47134201 | Msa0886840:intron | 60.0% |
| GTCGGACCGTGTACAACACC+GGG | - | chr6_1:47134191-47134210 | None:intergenic | 60.0% | |
| ! | GTCGGTGTCCATGTCGTGTC+CGG | + | chr6_1:47134403-47134422 | Msa0886840:intron | 60.0% |
| GCCCCCCAAGTCATTGCTCT+TGG | - | chr6_1:47137184-47137203 | None:intergenic | 60.0% | |
| GACTTGGGGGGCTACTGTTC+TGG | + | chr6_1:47137192-47137211 | Msa0886840:intron | 60.0% | |
| CGTGGGCGAGATAGGCATAC+CGG | + | chr6_1:47139104-47139123 | Msa0886840:intron | 60.0% | |
| GTGGGCGAGATAGGCATACC+GGG | + | chr6_1:47139105-47139124 | Msa0886840:intron | 60.0% | |
| CTGCCTTACTATGGCCTCCC+TGG | - | chr6_1:47139537-47139556 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr6_1:47134174-47134193 | None:intergenic | 65.0% | |
| CACGGACACCGGACACGACA+TGG | - | chr6_1:47134414-47134433 | None:intergenic | 65.0% | |
| AGGAACTCGGCTGTGCCCGC+GGG | - | chr6_1:47137541-47137560 | None:intergenic | 70.0% | |
| CAGGAACTCGGCTGTGCCCG+CGG | - | chr6_1:47137542-47137561 | None:intergenic | 70.0% | |
| TTGACCACGTGCTCGGCGCG+TGG | + | chr6_1:47139086-47139105 | Msa0886840:intron | 70.0% | |
| TGACCACGTGCTCGGCGCGT+GGG | + | chr6_1:47139087-47139106 | Msa0886840:intron | 70.0% | |
| GCTCGGCGCGTGGGCGAGAT+AGG | + | chr6_1:47139096-47139115 | Msa0886840:intron | 75.0% | |
| ! | TCGCCCACGCGCCGAGCACG+TGG | - | chr6_1:47139093-47139112 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 47133726 | 47139924 | 47133726 | ID=Msa0886840;Name=Msa0886840 |
| chr6_1 | mRNA | 47133726 | 47139924 | 47133726 | ID=Msa0886840-mRNA-1;Parent=Msa0886840;Name=Msa0886840-mRNA-1;_AED=0.20;_eAED=0.20;_QI=455|0.84|0.92|0.92|0.84|0.85|14|345|426 |
| chr6_1 | exon | 47133726 | 47134089 | 47133726 | ID=Msa0886840-mRNA-1:exon:9914;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47134474 | 47134550 | 47134474 | ID=Msa0886840-mRNA-1:exon:9915;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47135347 | 47135459 | 47135347 | ID=Msa0886840-mRNA-1:exon:9916;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47135578 | 47135691 | 47135578 | ID=Msa0886840-mRNA-1:exon:9917;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47135805 | 47135888 | 47135805 | ID=Msa0886840-mRNA-1:exon:9918;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47136006 | 47136077 | 47136006 | ID=Msa0886840-mRNA-1:exon:9919;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47136519 | 47136586 | 47136519 | ID=Msa0886840-mRNA-1:exon:9920;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47136882 | 47137022 | 47136882 | ID=Msa0886840-mRNA-1:exon:9921;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47137515 | 47137602 | 47137515 | ID=Msa0886840-mRNA-1:exon:9922;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47137702 | 47137775 | 47137702 | ID=Msa0886840-mRNA-1:exon:9923;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47137863 | 47138232 | 47137863 | ID=Msa0886840-mRNA-1:exon:9924;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47138325 | 47138371 | 47138325 | ID=Msa0886840-mRNA-1:exon:9925;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47138459 | 47138540 | 47138459 | ID=Msa0886840-mRNA-1:exon:9926;Parent=Msa0886840-mRNA-1 |
| chr6_1 | exon | 47139538 | 47139924 | 47139538 | ID=Msa0886840-mRNA-1:exon:9927;Parent=Msa0886840-mRNA-1 |
| chr6_1 | five_prime_UTR | 47133726 | 47134089 | 47133726 | ID=Msa0886840-mRNA-1:five_prime_utr;Parent=Msa0886840-mRNA-1 |
| chr6_1 | five_prime_UTR | 47134474 | 47134550 | 47134474 | ID=Msa0886840-mRNA-1:five_prime_utr;Parent=Msa0886840-mRNA-1 |
| chr6_1 | five_prime_UTR | 47135347 | 47135360 | 47135347 | ID=Msa0886840-mRNA-1:five_prime_utr;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47135361 | 47135459 | 47135361 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47135578 | 47135691 | 47135578 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47135805 | 47135888 | 47135805 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47136006 | 47136077 | 47136006 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47136519 | 47136586 | 47136519 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47136882 | 47137022 | 47136882 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47137515 | 47137602 | 47137515 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47137702 | 47137775 | 47137702 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47137863 | 47138232 | 47137863 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47138325 | 47138371 | 47138325 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47138459 | 47138540 | 47138459 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | CDS | 47139538 | 47139579 | 47139538 | ID=Msa0886840-mRNA-1:cds;Parent=Msa0886840-mRNA-1 |
| chr6_1 | three_prime_UTR | 47139580 | 47139924 | 47139580 | ID=Msa0886840-mRNA-1:three_prime_utr;Parent=Msa0886840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
