Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388830 | KEH39790.1 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 3.02e-85 | 254 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388830 | sp|Q6YXX9|GG2_ORYSJ | 40.625 | 96 | 55 | 1 | 29 | 124 | 49 | 142 | 1.68e-18 | 79.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388830 | A0A072VNS6 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 1.44e-85 | 254 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007470 | Msa1388830 | 0.980175 | 1.291733e-149 | -8.615850e-47 |
Msa0007510 | Msa1388830 | 0.904115 | 1.719345e-79 | -8.615850e-47 |
Msa0015090 | Msa1388830 | 0.800474 | 1.416865e-48 | -8.615850e-47 |
Msa0015480 | Msa1388830 | 0.800079 | 1.705036e-48 | -8.615850e-47 |
Msa0049910 | Msa1388830 | 0.966286 | 1.019953e-125 | -8.615850e-47 |
Msa0056060 | Msa1388830 | 0.964043 | 7.841829e-123 | -8.615850e-47 |
Msa0073870 | Msa1388830 | 0.821533 | 3.837792e-53 | -8.615850e-47 |
Msa0118540 | Msa1388830 | 0.843083 | 1.742517e-58 | -8.615850e-47 |
Msa1355890 | Msa1388830 | 0.879281 | 1.416427e-69 | -8.615850e-47 |
Msa1388830 | Msa1396400 | -0.804938 | 1.698838e-49 | -8.615850e-47 |
Msa1388830 | Msa1419000 | 0.800452 | 1.432014e-48 | -8.615850e-47 |
Msa1388830 | Msa1420270 | 0.818592 | 1.808956e-52 | -8.615850e-47 |
Msa1388830 | Msa1421210 | 0.837041 | 6.567644e-57 | -8.615850e-47 |
Msa1388830 | Msa1422810 | 0.815503 | 8.943082e-52 | -8.615850e-47 |
Msa1388830 | Msa1430130 | 0.813380 | 2.635960e-51 | -8.615850e-47 |
Msa1388830 | Msa1436600 | 0.800135 | 1.660999e-48 | -8.615850e-47 |
Msa1388830 | Msa1438840 | 0.812512 | 4.084134e-51 | -8.615850e-47 |
Msa1388830 | Msa1460750 | 0.814000 | 1.925372e-51 | -8.615850e-47 |
Msa0610130 | Msa1388830 | 0.807957 | 3.921548e-50 | -8.615850e-47 |
Msa0628030 | Msa1388830 | 0.806797 | 6.908552e-50 | -8.615850e-47 |
Msa0643320 | Msa1388830 | 0.831506 | 1.606066e-55 | -8.615850e-47 |
Msa0654620 | Msa1388830 | 0.806132 | 9.543196e-50 | -8.615850e-47 |
Msa0663490 | Msa1388830 | 0.806507 | 7.953370e-50 | -8.615850e-47 |
Msa0683140 | Msa1388830 | 0.837439 | 5.193644e-57 | -8.615850e-47 |
Msa0683600 | Msa1388830 | 0.841045 | 6.027697e-58 | -8.615850e-47 |
Msa0689780 | Msa1388830 | 0.820009 | 8.602308e-53 | -8.615850e-47 |
Msa0703910 | Msa1388830 | 0.816986 | 4.167832e-52 | -8.615850e-47 |
Msa0711150 | Msa1388830 | 0.803796 | 2.938228e-49 | -8.615850e-47 |
Msa0742150 | Msa1388830 | 0.800302 | 1.536098e-48 | -8.615850e-47 |
Msa0750850 | Msa1388830 | 0.804932 | 1.703995e-49 | -8.615850e-47 |
Msa0767370 | Msa1388830 | 0.803886 | 2.813801e-49 | -8.615850e-47 |
Msa0775560 | Msa1388830 | 0.831981 | 1.226477e-55 | -8.615850e-47 |
Msa0812950 | Msa1388830 | 0.825079 | 5.699415e-54 | -8.615850e-47 |
Msa0121840 | Msa1388830 | 0.838702 | 2.457466e-57 | -8.615850e-47 |
Msa0138020 | Msa1388830 | 0.807100 | 5.959961e-50 | -8.615850e-47 |
Msa0166730 | Msa1388830 | 0.857851 | 1.231285e-62 | -8.615850e-47 |
Msa0189030 | Msa1388830 | 0.810390 | 1.180474e-50 | -8.615850e-47 |
Msa1270660 | Msa1388830 | 0.808092 | 3.671150e-50 | -8.615850e-47 |
Msa1279480 | Msa1388830 | 0.801448 | 8.960301e-49 | -8.615850e-47 |
Msa1295330 | Msa1388830 | 0.823857 | 1.104852e-53 | -8.615850e-47 |
Msa1316360 | Msa1388830 | 0.805569 | 1.253159e-49 | -8.615850e-47 |
Msa0380100 | Msa1388830 | 0.806955 | 6.395751e-50 | -8.615850e-47 |
Msa0482180 | Msa1388830 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
Msa0993240 | Msa1388830 | 0.804277 | 2.333684e-49 | -8.615850e-47 |
Msa0994370 | Msa1388830 | 0.826419 | 2.741708e-54 | -8.615850e-47 |
Msa1023310 | Msa1388830 | 0.819635 | 1.047120e-52 | -8.615850e-47 |
Msa1062030 | Msa1388830 | 0.816421 | 5.579428e-52 | -8.615850e-47 |
Msa1062040 | Msa1388830 | 0.805351 | 1.392235e-49 | -8.615850e-47 |
Msa1064250 | Msa1388830 | 0.800395 | 1.470591e-48 | -8.615850e-47 |
Msa1071320 | Msa1388830 | 0.813621 | 2.333593e-51 | -8.615850e-47 |
Msa1093100 | Msa1388830 | 0.803183 | 3.935943e-49 | -8.615850e-47 |
Msa1107190 | Msa1388830 | 0.843807 | 1.116510e-58 | -8.615850e-47 |
Msa0256330 | Msa1388830 | 0.812688 | 3.737194e-51 | -8.615850e-47 |
Msa0295330 | Msa1388830 | 0.815607 | 8.478637e-52 | -8.615850e-47 |
Msa0299660 | Msa1388830 | 0.803459 | 3.450850e-49 | -8.615850e-47 |
Msa0309270 | Msa1388830 | 0.813279 | 2.773305e-51 | -8.615850e-47 |
Msa0347750 | Msa1388830 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
Msa1107200 | Msa1388830 | 0.830929 | 2.226195e-55 | -8.615850e-47 |
Msa1111870 | Msa1388830 | 0.814109 | 1.821322e-51 | -8.615850e-47 |
Msa1133230 | Msa1388830 | 0.819485 | 1.133350e-52 | -8.615850e-47 |
Msa1150780 | Msa1388830 | 0.814716 | 1.337338e-51 | -8.615850e-47 |
Msa1150790 | Msa1388830 | 0.826432 | 2.721405e-54 | -8.615850e-47 |
Msa1152920 | Msa1388830 | 0.818016 | 2.442504e-52 | -8.615850e-47 |
Msa1166090 | Msa1388830 | -0.807275 | 5.472231e-50 | -8.615850e-47 |
Msa1177780 | Msa1388830 | 0.809356 | 1.970397e-50 | -8.615850e-47 |
Msa1208380 | Msa1388830 | 0.807604 | 4.660565e-50 | -8.615850e-47 |
Msa1218580 | Msa1388830 | 0.801469 | 8.873086e-49 | -8.615850e-47 |
Msa0518170 | Msa1388830 | 0.818831 | 1.596417e-52 | -8.615850e-47 |
Msa0601390 | Msa1388830 | 0.811499 | 6.791762e-51 | -8.615850e-47 |
Msa0602370 | Msa1388830 | 0.815487 | 9.015169e-52 | -8.615850e-47 |
Msa0853440 | Msa1388830 | 0.833913 | 4.058625e-56 | -8.615850e-47 |
Msa0861470 | Msa1388830 | 0.814894 | 1.221107e-51 | -8.615850e-47 |
Msa0861570 | Msa1388830 | 0.815579 | 8.600167e-52 | -8.615850e-47 |
Msa0876360 | Msa1388830 | 0.815488 | 9.012463e-52 | -8.615850e-47 |
Msa0880810 | Msa1388830 | 0.803202 | 3.901131e-49 | -8.615850e-47 |
Msa0886840 | Msa1388830 | 0.819952 | 8.864201e-53 | -8.615850e-47 |
Msa0888260 | Msa1388830 | 0.821673 | 3.562857e-53 | -8.615850e-47 |
Msa0901320 | Msa1388830 | 0.814671 | 1.368213e-51 | -8.615850e-47 |
Msa0904640 | Msa1388830 | 0.804433 | 2.165576e-49 | -8.615850e-47 |
Msa0950330 | Msa1388830 | 0.809895 | 1.509431e-50 | -8.615850e-47 |
Msa0951400 | Msa1388830 | 0.807642 | 4.575257e-50 | -8.615850e-47 |
Msa0970480 | Msa1388830 | 0.801746 | 7.787042e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388830 | MtrunA17_Chr1g0148341 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 2.78e-89 | 254 |
Msa1388830 | MtrunA17_Chr1g0184941 | 34.951 | 103 | 62 | 2 | 23 | 125 | 11 | 108 | 2.39e-17 | 72.0 |
Msa1388830 | MtrunA17_Chr1g0188161 | 38.393 | 112 | 61 | 2 | 14 | 125 | 4 | 107 | 1.44e-13 | 62.0 |
Msa1388830 | MtrunA17_Chr1g0188131 | 43.902 | 82 | 43 | 2 | 45 | 125 | 29 | 108 | 1.28e-11 | 57.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1388830 | AT3G63420.1 | 36.170 | 94 | 56 | 2 | 32 | 125 | 8 | 97 | 4.31e-16 | 68.6 |
Msa1388830 | AT3G63420.2 | 36.170 | 94 | 56 | 2 | 32 | 125 | 8 | 97 | 4.31e-16 | 68.6 |
Msa1388830 | AT3G63420.3 | 39.759 | 83 | 46 | 2 | 32 | 114 | 48 | 126 | 4.58e-16 | 69.7 |
Msa1388830 | AT3G22942.1 | 44.000 | 75 | 40 | 1 | 45 | 119 | 21 | 93 | 1.95e-11 | 57.0 |
Find 35 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTCTTTCCCTGGCTTCTA+TGG | 0.223765 | tig0021196:-42272 | Msa1388830:CDS |
CTGGTTCTGGTTGGGATAGA+TGG | 0.293101 | tig0021196:-41382 | Msa1388830:CDS |
AACCTTGTTACTAAGTAATT+AGG | 0.299524 | tig0021196:+42411 | None:intergenic |
TAACATGCTTGCAGGATTAA+AGG | 0.337522 | tig0021196:-41416 | Msa1388830:intron |
TCTGGTTGGGATAGATGGTT+TGG | 0.341402 | tig0021196:-41377 | Msa1388830:CDS |
GGTCCAGTTGATGCTGGTTC+TGG | 0.360151 | tig0021196:-41395 | Msa1388830:CDS |
TGACCTGGAGAATATTGATT+TGG | 0.373161 | tig0021196:+42210 | None:intergenic |
GAAAAGGTTTAATAATGATA+TGG | 0.379479 | tig0021196:+42499 | None:intergenic |
TTTAACATTTATAAAGAGAA+AGG | 0.384919 | tig0021196:-41256 | Msa1388830:three_prime_UTR |
GTTGGAACTGTTTCTTTCCC+TGG | 0.413466 | tig0021196:-42281 | Msa1388830:CDS |
GAATATTGATTTGGTTATTG+AGG | 0.423057 | tig0021196:+42219 | None:intergenic |
TTGGTTATTGAGGTTAGATA+TGG | 0.427698 | tig0021196:+42229 | None:intergenic |
CAACCAGAACCAGCATCAAC+TGG | 0.434691 | tig0021196:+41392 | None:intergenic |
CCTACTTCATTTGCACAAGT+TGG | 0.435219 | tig0021196:-42299 | Msa1388830:CDS |
TTAACATTTATAAAGAGAAA+GGG | 0.449199 | tig0021196:-41255 | Msa1388830:three_prime_UTR |
GAAGTAACAGATTCAGAAGA+TGG | 0.451442 | tig0021196:-42362 | Msa1388830:CDS |
TCCATAAAGCAATTGAGAAA+AGG | 0.455217 | tig0021196:+42483 | None:intergenic |
TACCATGGAAGCATAGGATC+TGG | 0.459697 | tig0021196:+41736 | None:intergenic |
GGTTGGGATAGATGGTTTGG+AGG | 0.467119 | tig0021196:-41374 | Msa1388830:CDS |
AGTTGATGCTGGTTCTGGTT+GGG | 0.472706 | tig0021196:-41390 | Msa1388830:CDS |
TATGATAATGCAGGAAGAGT+TGG | 0.480511 | tig0021196:-41927 | Msa1388830:intron |
ATTCATTGAAAAGAAAGAAA+AGG | 0.487861 | tig0021196:-42324 | Msa1388830:CDS |
TATTGATTGCTGTCTATCCA+TGG | 0.496767 | tig0021196:+42385 | None:intergenic |
CAGTTGATGCTGGTTCTGGT+TGG | 0.505214 | tig0021196:-41391 | Msa1388830:CDS |
ATTAAAGGTCCAGTTGATGC+TGG | 0.509550 | tig0021196:-41401 | Msa1388830:CDS |
CCAACTTGTGCAAATGAAGT+AGG | 0.510578 | tig0021196:+42299 | None:intergenic |
TAACCAAATCAATATTCTCC+AGG | 0.514948 | tig0021196:-42213 | Msa1388830:intron |
TAATTAGGTATTATGAAAGA+AGG | 0.537826 | tig0021196:+42426 | None:intergenic |
TGCCAGATCCTATGCTTCCA+TGG | 0.550978 | tig0021196:-41738 | Msa1388830:intron |
ACTCTCGAAATCATAAGCGC+TGG | 0.564148 | tig0021196:-41343 | Msa1388830:CDS |
TGGAAGCATAGGATCTGGCA+TGG | 0.601609 | tig0021196:+41741 | None:intergenic |
TTAGTAACAAGGTTGTGCCA+TGG | 0.605768 | tig0021196:-42402 | Msa1388830:exon |
TGCTTACTCATTGCAGACCG+TGG | 0.621212 | tig0021196:+41877 | None:intergenic |
AACAATAGGTGAATCTTCCA+CGG | 0.624066 | tig0021196:-41894 | Msa1388830:CDS |
TACCTAATTACTTAGTAACA+AGG | 0.626109 | tig0021196:-42413 | Msa1388830:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTAGATATAGTTTTTTTT+GGG | + | tig0021196:41546-41565 | None:intergenic | 10.0% |
!!! | AAATTAGATATAGTTTTTTT+TGG | + | tig0021196:41547-41566 | None:intergenic | 10.0% |
!! | TAATTTACATGTTATATATA+TGG | - | tig0021196:41604-41623 | Msa1388830:intron | 10.0% |
!!! | AAAACAAATACTTTTTAAAT+TGG | - | tig0021196:41751-41770 | Msa1388830:CDS | 10.0% |
!!! | TATAGTTATATACATATTTT+CGG | - | tig0021196:42291-42310 | Msa1388830:CDS | 10.0% |
!!! | AATTAGATATAGTTTTTTTT+GGG | + | tig0021196:41546-41565 | None:intergenic | 10.0% |
!!! | AAATTAGATATAGTTTTTTT+TGG | + | tig0021196:41547-41566 | None:intergenic | 10.0% |
!! | TAATTTACATGTTATATATA+TGG | - | tig0021196:41604-41623 | Msa1388830:intron | 10.0% |
!!! | AAAACAAATACTTTTTAAAT+TGG | - | tig0021196:41751-41770 | Msa1388830:CDS | 10.0% |
!!! | TATAGTTATATACATATTTT+CGG | - | tig0021196:42291-42310 | Msa1388830:CDS | 10.0% |
!!! | AAATACTTTTTAAATTGGAT+TGG | - | tig0021196:41756-41775 | Msa1388830:CDS | 15.0% |
!!! | ATTGTTGTGTATTTTTTAAA+CGG | - | tig0021196:41936-41955 | Msa1388830:intron | 15.0% |
!!! | ATAGTTATATACATATTTTC+GGG | - | tig0021196:42292-42311 | Msa1388830:CDS | 15.0% |
!! | TTTAACATTTATAAAGAGAA+AGG | - | tig0021196:42338-42357 | Msa1388830:CDS | 15.0% |
!! | TTAACATTTATAAAGAGAAA+GGG | - | tig0021196:42339-42358 | Msa1388830:CDS | 15.0% |
!!! | AAATACTTTTTAAATTGGAT+TGG | - | tig0021196:41756-41775 | Msa1388830:CDS | 15.0% |
!!! | ATTGTTGTGTATTTTTTAAA+CGG | - | tig0021196:41936-41955 | Msa1388830:intron | 15.0% |
!!! | ATAGTTATATACATATTTTC+GGG | - | tig0021196:42292-42311 | Msa1388830:CDS | 15.0% |
!! | TTTAACATTTATAAAGAGAA+AGG | - | tig0021196:42338-42357 | Msa1388830:CDS | 15.0% |
!! | TTAACATTTATAAAGAGAAA+GGG | - | tig0021196:42339-42358 | Msa1388830:CDS | 15.0% |
!! | AATAATGATATGGTCAAAAA+AGG | + | tig0021196:41088-41107 | None:intergenic | 20.0% |
!! | GAAAAGGTTTAATAATGATA+TGG | + | tig0021196:41098-41117 | None:intergenic | 20.0% |
!! | TAATTAGGTATTATGAAAGA+AGG | + | tig0021196:41171-41190 | None:intergenic | 20.0% |
!! | ATTCATTGAAAAGAAAGAAA+AGG | - | tig0021196:41270-41289 | Msa1388830:three_prime_UTR | 20.0% |
!! | CAAAAACTTATATATCTTCT+TGG | - | tig0021196:41466-41485 | Msa1388830:intron | 20.0% |
!!! | TTAATTAAAAGCACAATGAA+TGG | + | tig0021196:41806-41825 | None:intergenic | 20.0% |
!!! | ACTCACAATATTACATTTTA+AGG | - | tig0021196:41907-41926 | Msa1388830:CDS | 20.0% |
!!! | TTGTTGTGTATTTTTTAAAC+GGG | - | tig0021196:41937-41956 | Msa1388830:intron | 20.0% |
!!! | TAGTTATATACATATTTTCG+GGG | - | tig0021196:42293-42312 | Msa1388830:CDS | 20.0% |
!! | AATAATGATATGGTCAAAAA+AGG | + | tig0021196:41088-41107 | None:intergenic | 20.0% |
!! | GAAAAGGTTTAATAATGATA+TGG | + | tig0021196:41098-41117 | None:intergenic | 20.0% |
!! | TAATTAGGTATTATGAAAGA+AGG | + | tig0021196:41171-41190 | None:intergenic | 20.0% |
!! | ATTCATTGAAAAGAAAGAAA+AGG | - | tig0021196:41270-41289 | Msa1388830:three_prime_UTR | 20.0% |
!! | CAAAAACTTATATATCTTCT+TGG | - | tig0021196:41466-41485 | Msa1388830:intron | 20.0% |
!!! | TTAATTAAAAGCACAATGAA+TGG | + | tig0021196:41806-41825 | None:intergenic | 20.0% |
!!! | ACTCACAATATTACATTTTA+AGG | - | tig0021196:41907-41926 | Msa1388830:CDS | 20.0% |
!!! | TTGTTGTGTATTTTTTAAAC+GGG | - | tig0021196:41937-41956 | Msa1388830:intron | 20.0% |
!!! | TAGTTATATACATATTTTCG+GGG | - | tig0021196:42293-42312 | Msa1388830:CDS | 20.0% |
! | TACCTAATTACTTAGTAACA+AGG | - | tig0021196:41181-41200 | Msa1388830:three_prime_UTR | 25.0% |
! | AACCTTGTTACTAAGTAATT+AGG | + | tig0021196:41186-41205 | None:intergenic | 25.0% |
!!! | GAATATTGATTTGGTTATTG+AGG | + | tig0021196:41378-41397 | None:intergenic | 25.0% |
!! | ATTTGAACTTATGATAATGC+AGG | - | tig0021196:41658-41677 | Msa1388830:intron | 25.0% |
! | TTGGAAAAACTTGAAACAAT+AGG | - | tig0021196:41686-41705 | Msa1388830:intron | 25.0% |
!!! | TGCTATTTTTCATCATTGAA+TGG | - | tig0021196:41779-41798 | Msa1388830:intron | 25.0% |
!! | AGATGATCTTAATTTTACCA+TGG | + | tig0021196:41876-41895 | None:intergenic | 25.0% |
! | TTACATGTTATCAACTCATA+TGG | + | tig0021196:42161-42180 | None:intergenic | 25.0% |
! | TACCTAATTACTTAGTAACA+AGG | - | tig0021196:41181-41200 | Msa1388830:three_prime_UTR | 25.0% |
! | AACCTTGTTACTAAGTAATT+AGG | + | tig0021196:41186-41205 | None:intergenic | 25.0% |
!!! | GAATATTGATTTGGTTATTG+AGG | + | tig0021196:41378-41397 | None:intergenic | 25.0% |
!! | ATTTGAACTTATGATAATGC+AGG | - | tig0021196:41658-41677 | Msa1388830:intron | 25.0% |
! | TTGGAAAAACTTGAAACAAT+AGG | - | tig0021196:41686-41705 | Msa1388830:intron | 25.0% |
!!! | TGCTATTTTTCATCATTGAA+TGG | - | tig0021196:41779-41798 | Msa1388830:intron | 25.0% |
!! | AGATGATCTTAATTTTACCA+TGG | + | tig0021196:41876-41895 | None:intergenic | 25.0% |
! | TTACATGTTATCAACTCATA+TGG | + | tig0021196:42161-42180 | None:intergenic | 25.0% |
ATGATATGGTCAAAAAAGGA+GGG | + | tig0021196:41084-41103 | None:intergenic | 30.0% | |
AATGATATGGTCAAAAAAGG+AGG | + | tig0021196:41085-41104 | None:intergenic | 30.0% | |
! | ACCTTTTCTCAATTGCTTTA+TGG | - | tig0021196:41110-41129 | Msa1388830:three_prime_UTR | 30.0% |
TCCATAAAGCAATTGAGAAA+AGG | + | tig0021196:41114-41133 | None:intergenic | 30.0% | |
TTGGTTATTGAGGTTAGATA+TGG | + | tig0021196:41368-41387 | None:intergenic | 30.0% | |
TAACCAAATCAATATTCTCC+AGG | - | tig0021196:41381-41400 | Msa1388830:CDS | 30.0% | |
TGCAGAACTATATATCTTCT+TGG | - | tig0021196:41575-41594 | Msa1388830:intron | 30.0% | |
!! | TAATTTTACCATGGAAGCAT+AGG | + | tig0021196:41867-41886 | None:intergenic | 30.0% |
!! | TTAAAAAGGGTCTTGTTAAC+CGG | + | tig0021196:42092-42111 | None:intergenic | 30.0% |
TGTTATCAACTCATATGGTT+AGG | + | tig0021196:42156-42175 | None:intergenic | 30.0% | |
ATGATATGGTCAAAAAAGGA+GGG | + | tig0021196:41084-41103 | None:intergenic | 30.0% | |
AATGATATGGTCAAAAAAGG+AGG | + | tig0021196:41085-41104 | None:intergenic | 30.0% | |
! | ACCTTTTCTCAATTGCTTTA+TGG | - | tig0021196:41110-41129 | Msa1388830:three_prime_UTR | 30.0% |
TCCATAAAGCAATTGAGAAA+AGG | + | tig0021196:41114-41133 | None:intergenic | 30.0% | |
TTGGTTATTGAGGTTAGATA+TGG | + | tig0021196:41368-41387 | None:intergenic | 30.0% | |
TAACCAAATCAATATTCTCC+AGG | - | tig0021196:41381-41400 | Msa1388830:CDS | 30.0% | |
TGCAGAACTATATATCTTCT+TGG | - | tig0021196:41575-41594 | Msa1388830:intron | 30.0% | |
!! | TAATTTTACCATGGAAGCAT+AGG | + | tig0021196:41867-41886 | None:intergenic | 30.0% |
!! | TTAAAAAGGGTCTTGTTAAC+CGG | + | tig0021196:42092-42111 | None:intergenic | 30.0% |
TGTTATCAACTCATATGGTT+AGG | + | tig0021196:42156-42175 | None:intergenic | 30.0% | |
! | TATTGATTGCTGTCTATCCA+TGG | + | tig0021196:41212-41231 | None:intergenic | 35.0% |
GAAGTAACAGATTCAGAAGA+TGG | - | tig0021196:41232-41251 | Msa1388830:three_prime_UTR | 35.0% | |
! | TATGTTTTCCATAGAAGCCA+GGG | + | tig0021196:41333-41352 | None:intergenic | 35.0% |
! | TGACCTGGAGAATATTGATT+TGG | + | tig0021196:41387-41406 | None:intergenic | 35.0% |
! | TATGATAATGCAGGAAGAGT+TGG | - | tig0021196:41667-41686 | Msa1388830:intron | 35.0% |
AACAATAGGTGAATCTTCCA+CGG | - | tig0021196:41700-41719 | Msa1388830:intron | 35.0% | |
ATAACATGTAACATGCTTGC+AGG | - | tig0021196:42170-42189 | Msa1388830:intron | 35.0% | |
TAACATGCTTGCAGGATTAA+AGG | - | tig0021196:42178-42197 | Msa1388830:intron | 35.0% | |
! | TATTGATTGCTGTCTATCCA+TGG | + | tig0021196:41212-41231 | None:intergenic | 35.0% |
GAAGTAACAGATTCAGAAGA+TGG | - | tig0021196:41232-41251 | Msa1388830:three_prime_UTR | 35.0% | |
! | TATGTTTTCCATAGAAGCCA+GGG | + | tig0021196:41333-41352 | None:intergenic | 35.0% |
! | TGACCTGGAGAATATTGATT+TGG | + | tig0021196:41387-41406 | None:intergenic | 35.0% |
! | TATGATAATGCAGGAAGAGT+TGG | - | tig0021196:41667-41686 | Msa1388830:intron | 35.0% |
AACAATAGGTGAATCTTCCA+CGG | - | tig0021196:41700-41719 | Msa1388830:intron | 35.0% | |
ATAACATGTAACATGCTTGC+AGG | - | tig0021196:42170-42189 | Msa1388830:intron | 35.0% | |
TAACATGCTTGCAGGATTAA+AGG | - | tig0021196:42178-42197 | Msa1388830:intron | 35.0% | |
ATATGGTCAAAAAAGGAGGG+TGG | + | tig0021196:41081-41100 | None:intergenic | 40.0% | |
TTAGTAACAAGGTTGTGCCA+TGG | - | tig0021196:41192-41211 | Msa1388830:three_prime_UTR | 40.0% | |
CCAACTTGTGCAAATGAAGT+AGG | + | tig0021196:41298-41317 | None:intergenic | 40.0% | |
CCTACTTCATTTGCACAAGT+TGG | - | tig0021196:41295-41314 | Msa1388830:three_prime_UTR | 40.0% | |
! | CTATGTTTTCCATAGAAGCC+AGG | + | tig0021196:41334-41353 | None:intergenic | 40.0% |
AAATGAGATGAGAGTTGACC+TGG | + | tig0021196:41402-41421 | None:intergenic | 40.0% | |
! | ATTAAAGGTCCAGTTGATGC+TGG | - | tig0021196:42193-42212 | Msa1388830:intron | 40.0% |
ATATGGTCAAAAAAGGAGGG+TGG | + | tig0021196:41081-41100 | None:intergenic | 40.0% | |
TTAGTAACAAGGTTGTGCCA+TGG | - | tig0021196:41192-41211 | Msa1388830:three_prime_UTR | 40.0% | |
CCAACTTGTGCAAATGAAGT+AGG | + | tig0021196:41298-41317 | None:intergenic | 40.0% | |
CCTACTTCATTTGCACAAGT+TGG | - | tig0021196:41295-41314 | Msa1388830:three_prime_UTR | 40.0% | |
! | CTATGTTTTCCATAGAAGCC+AGG | + | tig0021196:41334-41353 | None:intergenic | 40.0% |
AAATGAGATGAGAGTTGACC+TGG | + | tig0021196:41402-41421 | None:intergenic | 40.0% | |
! | ATTAAAGGTCCAGTTGATGC+TGG | - | tig0021196:42193-42212 | Msa1388830:intron | 40.0% |
! | GTTGGAACTGTTTCTTTCCC+TGG | - | tig0021196:41313-41332 | Msa1388830:three_prime_UTR | 45.0% |
GTTTCTTTCCCTGGCTTCTA+TGG | - | tig0021196:41322-41341 | Msa1388830:exon | 45.0% | |
! | TACCATGGAAGCATAGGATC+TGG | + | tig0021196:41861-41880 | None:intergenic | 45.0% |
AACTAGTGTCGCGTAAACAC+CGG | - | tig0021196:42070-42089 | Msa1388830:intron | 45.0% | |
!! | AGTTGATGCTGGTTCTGGTT+GGG | - | tig0021196:42204-42223 | Msa1388830:intron | 45.0% |
TCTGGTTGGGATAGATGGTT+TGG | - | tig0021196:42217-42236 | Msa1388830:CDS | 45.0% | |
ACTCTCGAAATCATAAGCGC+TGG | - | tig0021196:42251-42270 | Msa1388830:CDS | 45.0% | |
! | GTTGGAACTGTTTCTTTCCC+TGG | - | tig0021196:41313-41332 | Msa1388830:three_prime_UTR | 45.0% |
GTTTCTTTCCCTGGCTTCTA+TGG | - | tig0021196:41322-41341 | Msa1388830:exon | 45.0% | |
! | TACCATGGAAGCATAGGATC+TGG | + | tig0021196:41861-41880 | None:intergenic | 45.0% |
AACTAGTGTCGCGTAAACAC+CGG | - | tig0021196:42070-42089 | Msa1388830:intron | 45.0% | |
!! | AGTTGATGCTGGTTCTGGTT+GGG | - | tig0021196:42204-42223 | Msa1388830:intron | 45.0% |
TCTGGTTGGGATAGATGGTT+TGG | - | tig0021196:42217-42236 | Msa1388830:CDS | 45.0% | |
ACTCTCGAAATCATAAGCGC+TGG | - | tig0021196:42251-42270 | Msa1388830:CDS | 45.0% | |
!!! | TTATTTATATTTTAGTATTA+TGG | - | tig0021196:41425-41444 | Msa1388830:intron | 5.0% |
!!! | TTATTTGTTATATTTAAAAA+GGG | + | tig0021196:42105-42124 | None:intergenic | 5.0% |
!!! | ATTATTTGTTATATTTAAAA+AGG | + | tig0021196:42106-42125 | None:intergenic | 5.0% |
!!! | TTATTTATATTTTAGTATTA+TGG | - | tig0021196:41425-41444 | Msa1388830:intron | 5.0% |
!!! | TTATTTGTTATATTTAAAAA+GGG | + | tig0021196:42105-42124 | None:intergenic | 5.0% |
!!! | ATTATTTGTTATATTTAAAA+AGG | + | tig0021196:42106-42125 | None:intergenic | 5.0% |
TGCTTACTCATTGCAGACCG+TGG | + | tig0021196:41720-41739 | None:intergenic | 50.0% | |
! | TGGAAGCATAGGATCTGGCA+TGG | + | tig0021196:41856-41875 | None:intergenic | 50.0% |
TGCCAGATCCTATGCTTCCA+TGG | - | tig0021196:41856-41875 | Msa1388830:intron | 50.0% | |
CAACCAGAACCAGCATCAAC+TGG | + | tig0021196:42205-42224 | None:intergenic | 50.0% | |
!! | CAGTTGATGCTGGTTCTGGT+TGG | - | tig0021196:42203-42222 | Msa1388830:intron | 50.0% |
!! | CTGGTTCTGGTTGGGATAGA+TGG | - | tig0021196:42212-42231 | Msa1388830:intron | 50.0% |
! | GGTTGGGATAGATGGTTTGG+AGG | - | tig0021196:42220-42239 | Msa1388830:CDS | 50.0% |
TGCTTACTCATTGCAGACCG+TGG | + | tig0021196:41720-41739 | None:intergenic | 50.0% | |
! | TGGAAGCATAGGATCTGGCA+TGG | + | tig0021196:41856-41875 | None:intergenic | 50.0% |
TGCCAGATCCTATGCTTCCA+TGG | - | tig0021196:41856-41875 | Msa1388830:intron | 50.0% | |
CAACCAGAACCAGCATCAAC+TGG | + | tig0021196:42205-42224 | None:intergenic | 50.0% | |
!! | CAGTTGATGCTGGTTCTGGT+TGG | - | tig0021196:42203-42222 | Msa1388830:intron | 50.0% |
!! | CTGGTTCTGGTTGGGATAGA+TGG | - | tig0021196:42212-42231 | Msa1388830:intron | 50.0% |
! | GGTTGGGATAGATGGTTTGG+AGG | - | tig0021196:42220-42239 | Msa1388830:CDS | 50.0% |
!! | GGTCCAGTTGATGCTGGTTC+TGG | - | tig0021196:42199-42218 | Msa1388830:intron | 55.0% |
!! | GGTCCAGTTGATGCTGGTTC+TGG | - | tig0021196:42199-42218 | Msa1388830:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0021196 | gene | 41078 | 42538 | 41078 | ID=Msa1388830;Name=Msa1388830 |
tig0021196 | mRNA | 41078 | 42538 | 41078 | ID=Msa1388830-mRNA-1;Parent=Msa1388830;Name=Msa1388830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=133|1|1|1|1|1|4|259|125 |
tig0021196 | exon | 41078 | 41424 | 41078 | ID=Msa1388830-mRNA-1:exon:11365;Parent=Msa1388830-mRNA-1 |
tig0021196 | exon | 41739 | 41783 | 41739 | ID=Msa1388830-mRNA-1:exon:11364;Parent=Msa1388830-mRNA-1 |
tig0021196 | exon | 41884 | 41936 | 41884 | ID=Msa1388830-mRNA-1:exon:11363;Parent=Msa1388830-mRNA-1 |
tig0021196 | exon | 42214 | 42538 | 42214 | ID=Msa1388830-mRNA-1:exon:11362;Parent=Msa1388830-mRNA-1 |
tig0021196 | five_prime_UTR | 42406 | 42538 | 42406 | ID=Msa1388830-mRNA-1:five_prime_utr;Parent=Msa1388830-mRNA-1 |
tig0021196 | CDS | 42214 | 42405 | 42214 | ID=Msa1388830-mRNA-1:cds;Parent=Msa1388830-mRNA-1 |
tig0021196 | CDS | 41884 | 41936 | 41884 | ID=Msa1388830-mRNA-1:cds;Parent=Msa1388830-mRNA-1 |
tig0021196 | CDS | 41739 | 41783 | 41739 | ID=Msa1388830-mRNA-1:cds;Parent=Msa1388830-mRNA-1 |
tig0021196 | CDS | 41337 | 41424 | 41337 | ID=Msa1388830-mRNA-1:cds;Parent=Msa1388830-mRNA-1 |
tig0021196 | three_prime_UTR | 41078 | 41336 | 41078 | ID=Msa1388830-mRNA-1:three_prime_utr;Parent=Msa1388830-mRNA-1 |
Gene Sequence |
Protein sequence |