Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007470 | KEH39790.1 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 3.02e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007470 | sp|Q6YXX9|GG2_ORYSJ | 40.625 | 96 | 55 | 1 | 29 | 124 | 49 | 142 | 1.68e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0007470 | 0.816157 | 6.392014e-52 | -8.615850e-47 |
| Msa0007470 | Msa0007510 | 0.921035 | 5.991766e-88 | -8.615850e-47 |
| Msa0007470 | Msa0015090 | 0.819955 | 8.851245e-53 | -8.615850e-47 |
| Msa0007470 | Msa0015480 | 0.805991 | 1.021737e-49 | -8.615850e-47 |
| Msa0007470 | Msa0017320 | 0.811099 | 8.293041e-51 | -8.615850e-47 |
| Msa0007470 | Msa0049750 | 0.810814 | 9.558992e-51 | -8.615850e-47 |
| Msa0007470 | Msa0049910 | 0.985364 | 2.458511e-163 | -8.615850e-47 |
| Msa0007470 | Msa0055640 | 0.803187 | 3.929569e-49 | -8.615850e-47 |
| Msa0007470 | Msa0056060 | 0.982690 | 9.584309e-156 | -8.615850e-47 |
| Msa0007470 | Msa0073870 | 0.844120 | 9.201090e-59 | -8.615850e-47 |
| Msa0007470 | Msa0109590 | 0.804195 | 2.426890e-49 | -8.615850e-47 |
| Msa0007470 | Msa0111080 | 0.806487 | 8.033037e-50 | -8.615850e-47 |
| Msa0007470 | Msa0118540 | 0.837923 | 3.903472e-57 | -8.615850e-47 |
| Msa0007470 | Msa0121840 | 0.853555 | 2.212146e-61 | -8.615850e-47 |
| Msa0007470 | Msa0130520 | 0.803390 | 3.567456e-49 | -8.615850e-47 |
| Msa0007470 | Msa0138020 | 0.836887 | 7.191159e-57 | -8.615850e-47 |
| Msa0007470 | Msa0150230 | 0.809424 | 1.905643e-50 | -8.615850e-47 |
| Msa0007470 | Msa0152560 | 0.815416 | 9.347440e-52 | -8.615850e-47 |
| Msa0007470 | Msa0154920 | 0.805318 | 1.414165e-49 | -8.615850e-47 |
| Msa0007470 | Msa0155340 | 0.803643 | 3.160962e-49 | -8.615850e-47 |
| Msa0007470 | Msa0166730 | 0.868513 | 6.176852e-66 | -8.615850e-47 |
| Msa0007470 | Msa0189030 | 0.828611 | 8.166194e-55 | -8.615850e-47 |
| Msa0007470 | Msa0189610 | 0.800725 | 1.259428e-48 | -8.615850e-47 |
| Msa0007470 | Msa0217480 | 0.800056 | 1.723303e-48 | -8.615850e-47 |
| Msa0007470 | Msa0227360 | 0.802773 | 4.784768e-49 | -8.615850e-47 |
| Msa0007470 | Msa0236420 | 0.806169 | 9.371707e-50 | -8.615850e-47 |
| Msa0007470 | Msa0240270 | 0.802636 | 5.106685e-49 | -8.615850e-47 |
| Msa0007470 | Msa0241140 | 0.801916 | 7.183991e-49 | -8.615850e-47 |
| Msa0007470 | Msa0244190 | 0.803092 | 4.111212e-49 | -8.615850e-47 |
| Msa0007470 | Msa0256330 | 0.816022 | 6.850339e-52 | -8.615850e-47 |
| Msa0007470 | Msa0257500 | 0.816718 | 4.786774e-52 | -8.615850e-47 |
| Msa0007470 | Msa0262370 | 0.803715 | 3.054737e-49 | -8.615850e-47 |
| Msa0007470 | Msa0270960 | 0.806333 | 8.656250e-50 | -8.615850e-47 |
| Msa0007470 | Msa0278580 | 0.806284 | 8.864001e-50 | -8.615850e-47 |
| Msa0007470 | Msa0282720 | 0.811952 | 5.411166e-51 | -8.615850e-47 |
| Msa0007470 | Msa0295330 | 0.820073 | 8.316668e-53 | -8.615850e-47 |
| Msa0007470 | Msa0299660 | 0.832437 | 9.457905e-56 | -8.615850e-47 |
| Msa0007470 | Msa0309270 | 0.828852 | 7.141373e-55 | -8.615850e-47 |
| Msa0007470 | Msa0347750 | 0.821174 | 4.645945e-53 | -8.615850e-47 |
| Msa0007470 | Msa0364790 | 0.815656 | 8.267270e-52 | -8.615850e-47 |
| Msa0007470 | Msa0365950 | 0.802130 | 6.493517e-49 | -8.615850e-47 |
| Msa0007470 | Msa0380100 | 0.804783 | 1.830071e-49 | -8.615850e-47 |
| Msa0007470 | Msa0385490 | 0.802683 | 4.993983e-49 | -8.615850e-47 |
| Msa0007470 | Msa0388730 | 0.806104 | 9.673977e-50 | -8.615850e-47 |
| Msa0007470 | Msa0389210 | 0.810698 | 1.013006e-50 | -8.615850e-47 |
| Msa0007470 | Msa0394470 | 0.819072 | 1.407164e-52 | -8.615850e-47 |
| Msa0007470 | Msa0403770 | 0.802626 | 5.131799e-49 | -8.615850e-47 |
| Msa0007470 | Msa0427580 | 0.805705 | 1.173283e-49 | -8.615850e-47 |
| Msa0007470 | Msa0482180 | 0.828002 | 1.145196e-54 | -8.615850e-47 |
| Msa0007470 | Msa0485490 | 0.810629 | 1.048217e-50 | -8.615850e-47 |
| Msa0007470 | Msa0507610 | 0.808738 | 2.672485e-50 | -8.615850e-47 |
| Msa0007470 | Msa0518170 | 0.829006 | 6.551390e-55 | -8.615850e-47 |
| Msa0007470 | Msa0521740 | 0.809123 | 2.210283e-50 | -8.615850e-47 |
| Msa0007470 | Msa0534870 | 0.802288 | 6.023854e-49 | -8.615850e-47 |
| Msa0007470 | Msa0545290 | 0.806005 | 1.014586e-49 | -8.615850e-47 |
| Msa0007470 | Msa0549780 | 0.806084 | 9.768587e-50 | -8.615850e-47 |
| Msa0007470 | Msa0573890 | 0.813074 | 3.076541e-51 | -8.615850e-47 |
| Msa0007470 | Msa0587030 | 0.813113 | 3.017348e-51 | -8.615850e-47 |
| Msa0007470 | Msa0600890 | 0.808805 | 2.585269e-50 | -8.615850e-47 |
| Msa0007470 | Msa0601390 | 0.803894 | 2.803378e-49 | -8.615850e-47 |
| Msa0007470 | Msa0602370 | 0.804699 | 1.905846e-49 | -8.615850e-47 |
| Msa0007470 | Msa0610130 | 0.820974 | 5.164477e-53 | -8.615850e-47 |
| Msa0007470 | Msa0610180 | 0.806514 | 7.927941e-50 | -8.615850e-47 |
| Msa0007470 | Msa0626850 | 0.804506 | 2.090700e-49 | -8.615850e-47 |
| Msa0007470 | Msa0631320 | 0.800411 | 1.459400e-48 | -8.615850e-47 |
| Msa0007470 | Msa0643320 | 0.830067 | 3.617238e-55 | -8.615850e-47 |
| Msa0007470 | Msa0654620 | 0.820693 | 5.993101e-53 | -8.615850e-47 |
| Msa0007470 | Msa0664970 | 0.813526 | 2.447646e-51 | -8.615850e-47 |
| Msa0007470 | Msa0667740 | 0.806203 | 9.219858e-50 | -8.615850e-47 |
| Msa0007470 | Msa0679810 | 0.806182 | 9.314758e-50 | -8.615850e-47 |
| Msa0007470 | Msa0683140 | 0.831913 | 1.275094e-55 | -8.615850e-47 |
| Msa0007470 | Msa0683600 | 0.837996 | 3.736862e-57 | -8.615850e-47 |
| Msa0007470 | Msa0689780 | 0.828227 | 1.010959e-54 | -8.615850e-47 |
| Msa0007470 | Msa0703910 | 0.826301 | 2.925250e-54 | -8.615850e-47 |
| Msa0007470 | Msa0705990 | 0.806770 | 7.001456e-50 | -8.615850e-47 |
| Msa0007470 | Msa0711150 | 0.839914 | 1.191129e-57 | -8.615850e-47 |
| Msa0007470 | Msa0715410 | 0.803335 | 3.661989e-49 | -8.615850e-47 |
| Msa0007470 | Msa0742150 | 0.811699 | 6.143782e-51 | -8.615850e-47 |
| Msa0007470 | Msa0749440 | 0.801493 | 8.773986e-49 | -8.615850e-47 |
| Msa0007470 | Msa0750850 | 0.835761 | 1.390313e-56 | -8.615850e-47 |
| Msa0007470 | Msa0767370 | 0.805234 | 1.472669e-49 | -8.615850e-47 |
| Msa0007470 | Msa0775560 | 0.834831 | 2.386908e-56 | -8.615850e-47 |
| Msa0007470 | Msa0801730 | 0.801390 | 9.212046e-49 | -8.615850e-47 |
| Msa0007470 | Msa0805920 | 0.805306 | 1.422994e-49 | -8.615850e-47 |
| Msa0007470 | Msa0812950 | 0.836174 | 1.092034e-56 | -8.615850e-47 |
| Msa0007470 | Msa0823440 | 0.803324 | 3.680907e-49 | -8.615850e-47 |
| Msa0007470 | Msa0831850 | 0.810295 | 1.237427e-50 | -8.615850e-47 |
| Msa0007470 | Msa0833460 | 0.800087 | 1.699139e-48 | -8.615850e-47 |
| Msa0007470 | Msa0853440 | 0.840718 | 7.344293e-58 | -8.615850e-47 |
| Msa0007470 | Msa0861470 | 0.837697 | 4.461892e-57 | -8.615850e-47 |
| Msa0007470 | Msa0861570 | 0.833758 | 4.437801e-56 | -8.615850e-47 |
| Msa0007470 | Msa0870060 | 0.800553 | 1.365756e-48 | -8.615850e-47 |
| Msa0007470 | Msa0876360 | 0.830046 | 3.661255e-55 | -8.615850e-47 |
| Msa0007470 | Msa0880810 | 0.815379 | 9.529401e-52 | -8.615850e-47 |
| Msa0007470 | Msa0882400 | 0.801446 | 8.970473e-49 | -8.615850e-47 |
| Msa0007470 | Msa0886840 | 0.812455 | 4.203085e-51 | -8.615850e-47 |
| Msa0007470 | Msa0888260 | 0.836493 | 9.060925e-57 | -8.615850e-47 |
| Msa0007470 | Msa0894710 | 0.820426 | 6.904052e-53 | -8.615850e-47 |
| Msa0007470 | Msa0901320 | 0.829579 | 4.756013e-55 | -8.615850e-47 |
| Msa0007470 | Msa0904640 | 0.808314 | 3.291443e-50 | -8.615850e-47 |
| Msa0007470 | Msa0913080 | 0.800427 | 1.448435e-48 | -8.615850e-47 |
| Msa0007470 | Msa0921420 | 0.816429 | 5.554425e-52 | -8.615850e-47 |
| Msa0007470 | Msa0935770 | 0.806391 | 8.416240e-50 | -8.615850e-47 |
| Msa0007470 | Msa0944870 | 0.802586 | 5.229404e-49 | -8.615850e-47 |
| Msa0007470 | Msa0950330 | 0.821853 | 3.236479e-53 | -8.615850e-47 |
| Msa0007470 | Msa0951400 | 0.804879 | 1.747717e-49 | -8.615850e-47 |
| Msa0007470 | Msa0960390 | 0.803782 | 2.957922e-49 | -8.615850e-47 |
| Msa0007470 | Msa0970480 | 0.818520 | 1.878337e-52 | -8.615850e-47 |
| Msa0007470 | Msa0978700 | 0.812467 | 4.178190e-51 | -8.615850e-47 |
| Msa0007470 | Msa0980020 | 0.805638 | 1.211759e-49 | -8.615850e-47 |
| Msa0007470 | Msa0994370 | 0.830055 | 3.642699e-55 | -8.615850e-47 |
| Msa0007470 | Msa0994910 | 0.811965 | 5.376154e-51 | -8.615850e-47 |
| Msa0007470 | Msa1023300 | 0.808693 | 2.732541e-50 | -8.615850e-47 |
| Msa0007470 | Msa1023310 | 0.841124 | 5.746314e-58 | -8.615850e-47 |
| Msa0007470 | Msa1025080 | 0.815543 | 8.758519e-52 | -8.615850e-47 |
| Msa0007470 | Msa1026940 | 0.807539 | 4.811573e-50 | -8.615850e-47 |
| Msa0007470 | Msa1050410 | 0.800847 | 1.189078e-48 | -8.615850e-47 |
| Msa0007470 | Msa1054510 | 0.805404 | 1.356945e-49 | -8.615850e-47 |
| Msa0007470 | Msa1062030 | 0.822312 | 2.534092e-53 | -8.615850e-47 |
| Msa0007470 | Msa1062040 | 0.825807 | 3.832612e-54 | -8.615850e-47 |
| Msa0007470 | Msa1064250 | 0.806060 | 9.879816e-50 | -8.615850e-47 |
| Msa0007470 | Msa1071320 | 0.833324 | 5.692510e-56 | -8.615850e-47 |
| Msa0007470 | Msa1076960 | 0.800817 | 1.206180e-48 | -8.615850e-47 |
| Msa0007470 | Msa1081790 | -0.807832 | 4.169514e-50 | -8.615850e-47 |
| Msa0007470 | Msa1093100 | 0.810147 | 1.332184e-50 | -8.615850e-47 |
| Msa0007470 | Msa1100930 | 0.809589 | 1.756126e-50 | -8.615850e-47 |
| Msa0007470 | Msa1107190 | 0.858725 | 6.761965e-63 | -8.615850e-47 |
| Msa0007470 | Msa1107200 | 0.853059 | 3.069356e-61 | -8.615850e-47 |
| Msa0007470 | Msa1109090 | 0.811126 | 8.180182e-51 | -8.615850e-47 |
| Msa0007470 | Msa1111870 | 0.835523 | 1.596825e-56 | -8.615850e-47 |
| Msa0007470 | Msa1133230 | 0.818921 | 1.523244e-52 | -8.615850e-47 |
| Msa0007470 | Msa1138530 | 0.804159 | 2.469290e-49 | -8.615850e-47 |
| Msa0007470 | Msa1150780 | 0.835916 | 1.269623e-56 | -8.615850e-47 |
| Msa0007470 | Msa1150790 | 0.845519 | 3.860165e-59 | -8.615850e-47 |
| Msa0007470 | Msa1150800 | 0.804916 | 1.716523e-49 | -8.615850e-47 |
| Msa0007470 | Msa1150810 | 0.809655 | 1.699818e-50 | -8.615850e-47 |
| Msa0007470 | Msa1152920 | 0.818175 | 2.247760e-52 | -8.615850e-47 |
| Msa0007470 | Msa1166090 | -0.809910 | 1.497701e-50 | -8.615850e-47 |
| Msa0007470 | Msa1176720 | 0.815256 | 1.014487e-51 | -8.615850e-47 |
| Msa0007470 | Msa1177780 | 0.821307 | 4.329486e-53 | -8.615850e-47 |
| Msa0007470 | Msa1200250 | 0.825228 | 5.254474e-54 | -8.615850e-47 |
| Msa0007470 | Msa1202660 | 0.811756 | 5.972100e-51 | -8.615850e-47 |
| Msa0007470 | Msa1207310 | 0.818433 | 1.965734e-52 | -8.615850e-47 |
| Msa0007470 | Msa1208380 | 0.822542 | 2.241158e-53 | -8.615850e-47 |
| Msa0007470 | Msa1212050 | 0.804811 | 1.805833e-49 | -8.615850e-47 |
| Msa0007470 | Msa1218580 | 0.813720 | 2.218807e-51 | -8.615850e-47 |
| Msa0007470 | Msa1225100 | 0.805140 | 1.541200e-49 | -8.615850e-47 |
| Msa0007470 | Msa1231840 | 0.800526 | 1.383192e-48 | -8.615850e-47 |
| Msa0007470 | Msa1258370 | 0.813240 | 2.828593e-51 | -8.615850e-47 |
| Msa0007470 | Msa1270660 | 0.822819 | 1.931746e-53 | -8.615850e-47 |
| Msa0007470 | Msa1270730 | 0.803688 | 3.094296e-49 | -8.615850e-47 |
| Msa0007470 | Msa1279480 | 0.840676 | 7.533910e-58 | -8.615850e-47 |
| Msa0007470 | Msa1280170 | 0.802642 | 5.092816e-49 | -8.615850e-47 |
| Msa0007470 | Msa1295330 | 0.833457 | 5.274400e-56 | -8.615850e-47 |
| Msa0007470 | Msa1307180 | 0.804050 | 2.602360e-49 | -8.615850e-47 |
| Msa0007470 | Msa1316360 | 0.820344 | 7.209035e-53 | -8.615850e-47 |
| Msa0007470 | Msa1328520 | 0.811041 | 8.534695e-51 | -8.615850e-47 |
| Msa0007470 | Msa1329870 | 0.807674 | 4.504840e-50 | -8.615850e-47 |
| Msa0007470 | Msa1335230 | 0.811511 | 6.748787e-51 | -8.615850e-47 |
| Msa0007470 | Msa1355890 | 0.901181 | 3.474517e-78 | -8.615850e-47 |
| Msa0007470 | Msa1380220 | 0.821461 | 3.988129e-53 | -8.615850e-47 |
| Msa0007470 | Msa1388830 | 0.980175 | 1.291733e-149 | -8.615850e-47 |
| Msa0007470 | Msa1394310 | 0.800663 | 1.296895e-48 | -8.615850e-47 |
| Msa0007470 | Msa1396400 | -0.807900 | 4.032954e-50 | -8.615850e-47 |
| Msa0007470 | Msa1405220 | 0.804360 | 2.242501e-49 | -8.615850e-47 |
| Msa0007470 | Msa1419000 | 0.802530 | 5.370423e-49 | -8.615850e-47 |
| Msa0007470 | Msa1420270 | 0.828607 | 8.183753e-55 | -8.615850e-47 |
| Msa0007470 | Msa1421210 | 0.843176 | 1.645879e-58 | -8.615850e-47 |
| Msa0007470 | Msa1422810 | 0.806142 | 9.498227e-50 | -8.615850e-47 |
| Msa0007470 | Msa1430130 | 0.835075 | 2.072106e-56 | -8.615850e-47 |
| Msa0007470 | Msa1436600 | 0.812371 | 4.384769e-51 | -8.615850e-47 |
| Msa0007470 | Msa1438840 | 0.818618 | 1.784044e-52 | -8.615850e-47 |
| Msa0007470 | Msa1457160 | 0.823535 | 1.314919e-53 | -8.615850e-47 |
| Msa0007470 | Msa1460750 | 0.835280 | 1.839109e-56 | -8.615850e-47 |
| Msa0007470 | Msa1462360 | 0.815805 | 7.657280e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007470 | MtrunA17_Chr1g0148341 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 2.78e-89 | 254 |
| Msa0007470 | MtrunA17_Chr1g0184941 | 34.951 | 103 | 62 | 2 | 23 | 125 | 11 | 108 | 2.39e-17 | 72.0 |
| Msa0007470 | MtrunA17_Chr1g0188161 | 38.393 | 112 | 61 | 2 | 14 | 125 | 4 | 107 | 1.44e-13 | 62.0 |
| Msa0007470 | MtrunA17_Chr1g0188131 | 43.902 | 82 | 43 | 2 | 45 | 125 | 29 | 108 | 1.28e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007470 | AT3G63420.1 | 36.170 | 94 | 56 | 2 | 32 | 125 | 8 | 97 | 4.31e-16 | 68.6 |
| Msa0007470 | AT3G63420.2 | 36.170 | 94 | 56 | 2 | 32 | 125 | 8 | 97 | 4.31e-16 | 68.6 |
| Msa0007470 | AT3G63420.3 | 39.759 | 83 | 46 | 2 | 32 | 114 | 48 | 126 | 4.58e-16 | 69.7 |
| Msa0007470 | AT3G22942.1 | 44.000 | 75 | 40 | 1 | 45 | 119 | 21 | 93 | 1.95e-11 | 57.0 |
Find 35 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTTCCCTGGCTTCTA+TGG | 0.223765 | 1_1:+10738875 | Msa0007470:CDS |
| CTGGTTCTGGTTGGGATAGA+TGG | 0.293101 | 1_1:+10739765 | Msa0007470:CDS |
| AACCTTGTTACTAAGTAATT+AGG | 0.299524 | 1_1:-10738736 | None:intergenic |
| TAACATGCTTGCAGGATTAA+AGG | 0.337522 | 1_1:+10739731 | Msa0007470:intron |
| TCTGGTTGGGATAGATGGTT+TGG | 0.341402 | 1_1:+10739770 | Msa0007470:CDS |
| GGTCCAGTTGATGCTGGTTC+TGG | 0.360151 | 1_1:+10739752 | Msa0007470:CDS |
| TGACCTGGAGAATATTGATT+TGG | 0.373161 | 1_1:-10738937 | None:intergenic |
| GAAAAGGTTTAATAATGATA+TGG | 0.379479 | 1_1:-10738648 | None:intergenic |
| TTTAACATTTATAAAGAGAA+AGG | 0.384919 | 1_1:+10739891 | Msa0007470:three_prime_UTR |
| GTTGGAACTGTTTCTTTCCC+TGG | 0.413466 | 1_1:+10738866 | Msa0007470:CDS |
| GAATATTGATTTGGTTATTG+AGG | 0.423057 | 1_1:-10738928 | None:intergenic |
| TTGGTTATTGAGGTTAGATA+TGG | 0.427698 | 1_1:-10738918 | None:intergenic |
| CAACCAGAACCAGCATCAAC+TGG | 0.434691 | 1_1:-10739755 | None:intergenic |
| CCTACTTCATTTGCACAAGT+TGG | 0.435219 | 1_1:+10738848 | Msa0007470:CDS |
| TTAACATTTATAAAGAGAAA+GGG | 0.449199 | 1_1:+10739892 | Msa0007470:three_prime_UTR |
| GAAGTAACAGATTCAGAAGA+TGG | 0.451442 | 1_1:+10738785 | Msa0007470:CDS |
| TCCATAAAGCAATTGAGAAA+AGG | 0.455217 | 1_1:-10738664 | None:intergenic |
| TACCATGGAAGCATAGGATC+TGG | 0.459697 | 1_1:-10739411 | None:intergenic |
| GGTTGGGATAGATGGTTTGG+AGG | 0.467119 | 1_1:+10739773 | Msa0007470:CDS |
| AGTTGATGCTGGTTCTGGTT+GGG | 0.472706 | 1_1:+10739757 | Msa0007470:CDS |
| TATGATAATGCAGGAAGAGT+TGG | 0.480511 | 1_1:+10739220 | Msa0007470:intron |
| ATTCATTGAAAAGAAAGAAA+AGG | 0.487861 | 1_1:+10738823 | Msa0007470:CDS |
| TATTGATTGCTGTCTATCCA+TGG | 0.496767 | 1_1:-10738762 | None:intergenic |
| CAGTTGATGCTGGTTCTGGT+TGG | 0.505214 | 1_1:+10739756 | Msa0007470:CDS |
| ATTAAAGGTCCAGTTGATGC+TGG | 0.509550 | 1_1:+10739746 | Msa0007470:CDS |
| CCAACTTGTGCAAATGAAGT+AGG | 0.510578 | 1_1:-10738848 | None:intergenic |
| TAACCAAATCAATATTCTCC+AGG | 0.514948 | 1_1:+10738934 | Msa0007470:CDS |
| TAATTAGGTATTATGAAAGA+AGG | 0.537826 | 1_1:-10738721 | None:intergenic |
| TGCCAGATCCTATGCTTCCA+TGG | 0.550978 | 1_1:+10739409 | Msa0007470:CDS |
| ACTCTCGAAATCATAAGCGC+TGG | 0.564148 | 1_1:+10739804 | Msa0007470:CDS |
| TGGAAGCATAGGATCTGGCA+TGG | 0.601609 | 1_1:-10739406 | None:intergenic |
| TTAGTAACAAGGTTGTGCCA+TGG | 0.605768 | 1_1:+10738745 | Msa0007470:exon |
| TGCTTACTCATTGCAGACCG+TGG | 0.621212 | 1_1:-10739270 | None:intergenic |
| AACAATAGGTGAATCTTCCA+CGG | 0.624066 | 1_1:+10739253 | Msa0007470:CDS |
| TACCTAATTACTTAGTAACA+AGG | 0.626109 | 1_1:+10738734 | Msa0007470:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGATATAGTTTTTTTT+GGG | - | chr1_1:10739099-10739118 | None:intergenic | 10.0% |
| !!! | AAATTAGATATAGTTTTTTT+TGG | - | chr1_1:10739100-10739119 | None:intergenic | 10.0% |
| !! | TAATTTACATGTTATATATA+TGG | + | chr1_1:10739157-10739176 | Msa0007470:intron | 10.0% |
| !!! | AAAACAAATACTTTTTAAAT+TGG | + | chr1_1:10739304-10739323 | Msa0007470:intron | 10.0% |
| !!! | TATAGTTATATACATATTTT+CGG | + | chr1_1:10739844-10739863 | Msa0007470:three_prime_UTR | 10.0% |
| !!! | AATTAGATATAGTTTTTTTT+GGG | - | chr1_1:10739099-10739118 | None:intergenic | 10.0% |
| !!! | AAATTAGATATAGTTTTTTT+TGG | - | chr1_1:10739100-10739119 | None:intergenic | 10.0% |
| !! | TAATTTACATGTTATATATA+TGG | + | chr1_1:10739157-10739176 | Msa0007470:intron | 10.0% |
| !!! | AAAACAAATACTTTTTAAAT+TGG | + | chr1_1:10739304-10739323 | Msa0007470:intron | 10.0% |
| !!! | TATAGTTATATACATATTTT+CGG | + | chr1_1:10739844-10739863 | Msa0007470:three_prime_UTR | 10.0% |
| !!! | AAATACTTTTTAAATTGGAT+TGG | + | chr1_1:10739309-10739328 | Msa0007470:intron | 15.0% |
| !!! | ATTGTTGTGTATTTTTTAAA+CGG | + | chr1_1:10739489-10739508 | Msa0007470:intron | 15.0% |
| !!! | ATAGTTATATACATATTTTC+GGG | + | chr1_1:10739845-10739864 | Msa0007470:three_prime_UTR | 15.0% |
| !! | TTTAACATTTATAAAGAGAA+AGG | + | chr1_1:10739891-10739910 | Msa0007470:three_prime_UTR | 15.0% |
| !! | TTAACATTTATAAAGAGAAA+GGG | + | chr1_1:10739892-10739911 | Msa0007470:three_prime_UTR | 15.0% |
| !!! | AAATACTTTTTAAATTGGAT+TGG | + | chr1_1:10739309-10739328 | Msa0007470:intron | 15.0% |
| !!! | ATTGTTGTGTATTTTTTAAA+CGG | + | chr1_1:10739489-10739508 | Msa0007470:intron | 15.0% |
| !!! | ATAGTTATATACATATTTTC+GGG | + | chr1_1:10739845-10739864 | Msa0007470:three_prime_UTR | 15.0% |
| !! | TTTAACATTTATAAAGAGAA+AGG | + | chr1_1:10739891-10739910 | Msa0007470:three_prime_UTR | 15.0% |
| !! | TTAACATTTATAAAGAGAAA+GGG | + | chr1_1:10739892-10739911 | Msa0007470:three_prime_UTR | 15.0% |
| !! | AATAATGATATGGTCAAAAA+AGG | - | chr1_1:10738641-10738660 | None:intergenic | 20.0% |
| !! | GAAAAGGTTTAATAATGATA+TGG | - | chr1_1:10738651-10738670 | None:intergenic | 20.0% |
| !! | TAATTAGGTATTATGAAAGA+AGG | - | chr1_1:10738724-10738743 | None:intergenic | 20.0% |
| !! | ATTCATTGAAAAGAAAGAAA+AGG | + | chr1_1:10738823-10738842 | Msa0007470:CDS | 20.0% |
| !! | CAAAAACTTATATATCTTCT+TGG | + | chr1_1:10739019-10739038 | Msa0007470:intron | 20.0% |
| !!! | TTAATTAAAAGCACAATGAA+TGG | - | chr1_1:10739359-10739378 | None:intergenic | 20.0% |
| !!! | ACTCACAATATTACATTTTA+AGG | + | chr1_1:10739460-10739479 | Msa0007470:intron | 20.0% |
| !!! | TTGTTGTGTATTTTTTAAAC+GGG | + | chr1_1:10739490-10739509 | Msa0007470:intron | 20.0% |
| !!! | TAGTTATATACATATTTTCG+GGG | + | chr1_1:10739846-10739865 | Msa0007470:three_prime_UTR | 20.0% |
| !! | AATAATGATATGGTCAAAAA+AGG | - | chr1_1:10738641-10738660 | None:intergenic | 20.0% |
| !! | GAAAAGGTTTAATAATGATA+TGG | - | chr1_1:10738651-10738670 | None:intergenic | 20.0% |
| !! | TAATTAGGTATTATGAAAGA+AGG | - | chr1_1:10738724-10738743 | None:intergenic | 20.0% |
| !! | ATTCATTGAAAAGAAAGAAA+AGG | + | chr1_1:10738823-10738842 | Msa0007470:CDS | 20.0% |
| !! | CAAAAACTTATATATCTTCT+TGG | + | chr1_1:10739019-10739038 | Msa0007470:intron | 20.0% |
| !!! | TTAATTAAAAGCACAATGAA+TGG | - | chr1_1:10739359-10739378 | None:intergenic | 20.0% |
| !!! | ACTCACAATATTACATTTTA+AGG | + | chr1_1:10739460-10739479 | Msa0007470:intron | 20.0% |
| !!! | TTGTTGTGTATTTTTTAAAC+GGG | + | chr1_1:10739490-10739509 | Msa0007470:intron | 20.0% |
| !!! | TAGTTATATACATATTTTCG+GGG | + | chr1_1:10739846-10739865 | Msa0007470:three_prime_UTR | 20.0% |
| ! | TACCTAATTACTTAGTAACA+AGG | + | chr1_1:10738734-10738753 | Msa0007470:five_prime_UTR | 25.0% |
| ! | AACCTTGTTACTAAGTAATT+AGG | - | chr1_1:10738739-10738758 | None:intergenic | 25.0% |
| !!! | GAATATTGATTTGGTTATTG+AGG | - | chr1_1:10738931-10738950 | None:intergenic | 25.0% |
| ! | TGCAGAACTATATATATTCT+TGG | + | chr1_1:10739128-10739147 | Msa0007470:intron | 25.0% |
| !! | ATTTGAACTTATGATAATGC+AGG | + | chr1_1:10739211-10739230 | Msa0007470:intron | 25.0% |
| ! | TTGGAAAAACTTGAAACAAT+AGG | + | chr1_1:10739239-10739258 | Msa0007470:CDS | 25.0% |
| !!! | TGCTATTTTTCATCATTGAA+TGG | + | chr1_1:10739332-10739351 | Msa0007470:intron | 25.0% |
| !! | AGATGATCTTAATTTTACCA+TGG | - | chr1_1:10739429-10739448 | None:intergenic | 25.0% |
| ! | TTACATGTTATCAACTCATA+TGG | - | chr1_1:10739714-10739733 | None:intergenic | 25.0% |
| ! | TACCTAATTACTTAGTAACA+AGG | + | chr1_1:10738734-10738753 | Msa0007470:five_prime_UTR | 25.0% |
| ! | AACCTTGTTACTAAGTAATT+AGG | - | chr1_1:10738739-10738758 | None:intergenic | 25.0% |
| !!! | GAATATTGATTTGGTTATTG+AGG | - | chr1_1:10738931-10738950 | None:intergenic | 25.0% |
| ! | TGCAGAACTATATATATTCT+TGG | + | chr1_1:10739128-10739147 | Msa0007470:intron | 25.0% |
| !! | ATTTGAACTTATGATAATGC+AGG | + | chr1_1:10739211-10739230 | Msa0007470:intron | 25.0% |
| ! | TTGGAAAAACTTGAAACAAT+AGG | + | chr1_1:10739239-10739258 | Msa0007470:CDS | 25.0% |
| !!! | TGCTATTTTTCATCATTGAA+TGG | + | chr1_1:10739332-10739351 | Msa0007470:intron | 25.0% |
| !! | AGATGATCTTAATTTTACCA+TGG | - | chr1_1:10739429-10739448 | None:intergenic | 25.0% |
| ! | TTACATGTTATCAACTCATA+TGG | - | chr1_1:10739714-10739733 | None:intergenic | 25.0% |
| ATGATATGGTCAAAAAAGGA+GGG | - | chr1_1:10738637-10738656 | None:intergenic | 30.0% | |
| AATGATATGGTCAAAAAAGG+AGG | - | chr1_1:10738638-10738657 | None:intergenic | 30.0% | |
| ! | ACCTTTTCTCAATTGCTTTA+TGG | + | chr1_1:10738663-10738682 | Msa0007470:five_prime_UTR | 30.0% |
| TCCATAAAGCAATTGAGAAA+AGG | - | chr1_1:10738667-10738686 | None:intergenic | 30.0% | |
| TTGGTTATTGAGGTTAGATA+TGG | - | chr1_1:10738921-10738940 | None:intergenic | 30.0% | |
| TAACCAAATCAATATTCTCC+AGG | + | chr1_1:10738934-10738953 | Msa0007470:CDS | 30.0% | |
| !! | TAATTTTACCATGGAAGCAT+AGG | - | chr1_1:10739420-10739439 | None:intergenic | 30.0% |
| !! | TTAAAAAGGGTCTTGTTAAC+CGG | - | chr1_1:10739645-10739664 | None:intergenic | 30.0% |
| TGTTATCAACTCATATGGTT+AGG | - | chr1_1:10739709-10739728 | None:intergenic | 30.0% | |
| ATGATATGGTCAAAAAAGGA+GGG | - | chr1_1:10738637-10738656 | None:intergenic | 30.0% | |
| AATGATATGGTCAAAAAAGG+AGG | - | chr1_1:10738638-10738657 | None:intergenic | 30.0% | |
| ! | ACCTTTTCTCAATTGCTTTA+TGG | + | chr1_1:10738663-10738682 | Msa0007470:five_prime_UTR | 30.0% |
| TCCATAAAGCAATTGAGAAA+AGG | - | chr1_1:10738667-10738686 | None:intergenic | 30.0% | |
| TTGGTTATTGAGGTTAGATA+TGG | - | chr1_1:10738921-10738940 | None:intergenic | 30.0% | |
| TAACCAAATCAATATTCTCC+AGG | + | chr1_1:10738934-10738953 | Msa0007470:CDS | 30.0% | |
| !! | TAATTTTACCATGGAAGCAT+AGG | - | chr1_1:10739420-10739439 | None:intergenic | 30.0% |
| !! | TTAAAAAGGGTCTTGTTAAC+CGG | - | chr1_1:10739645-10739664 | None:intergenic | 30.0% |
| TGTTATCAACTCATATGGTT+AGG | - | chr1_1:10739709-10739728 | None:intergenic | 30.0% | |
| ! | TATTGATTGCTGTCTATCCA+TGG | - | chr1_1:10738765-10738784 | None:intergenic | 35.0% |
| GAAGTAACAGATTCAGAAGA+TGG | + | chr1_1:10738785-10738804 | Msa0007470:CDS | 35.0% | |
| ! | TATGTTTTCCATAGAAGCCA+GGG | - | chr1_1:10738886-10738905 | None:intergenic | 35.0% |
| ! | TGACCTGGAGAATATTGATT+TGG | - | chr1_1:10738940-10738959 | None:intergenic | 35.0% |
| ! | TATGATAATGCAGGAAGAGT+TGG | + | chr1_1:10739220-10739239 | Msa0007470:intron | 35.0% |
| AACAATAGGTGAATCTTCCA+CGG | + | chr1_1:10739253-10739272 | Msa0007470:CDS | 35.0% | |
| ATAACATGTAACATGCTTGC+AGG | + | chr1_1:10739723-10739742 | Msa0007470:intron | 35.0% | |
| TAACATGCTTGCAGGATTAA+AGG | + | chr1_1:10739731-10739750 | Msa0007470:intron | 35.0% | |
| ! | TATTGATTGCTGTCTATCCA+TGG | - | chr1_1:10738765-10738784 | None:intergenic | 35.0% |
| GAAGTAACAGATTCAGAAGA+TGG | + | chr1_1:10738785-10738804 | Msa0007470:CDS | 35.0% | |
| ! | TATGTTTTCCATAGAAGCCA+GGG | - | chr1_1:10738886-10738905 | None:intergenic | 35.0% |
| ! | TGACCTGGAGAATATTGATT+TGG | - | chr1_1:10738940-10738959 | None:intergenic | 35.0% |
| ! | TATGATAATGCAGGAAGAGT+TGG | + | chr1_1:10739220-10739239 | Msa0007470:intron | 35.0% |
| AACAATAGGTGAATCTTCCA+CGG | + | chr1_1:10739253-10739272 | Msa0007470:CDS | 35.0% | |
| ATAACATGTAACATGCTTGC+AGG | + | chr1_1:10739723-10739742 | Msa0007470:intron | 35.0% | |
| TAACATGCTTGCAGGATTAA+AGG | + | chr1_1:10739731-10739750 | Msa0007470:intron | 35.0% | |
| ATATGGTCAAAAAAGGAGGG+TGG | - | chr1_1:10738634-10738653 | None:intergenic | 40.0% | |
| TTAGTAACAAGGTTGTGCCA+TGG | + | chr1_1:10738745-10738764 | Msa0007470:exon | 40.0% | |
| CCAACTTGTGCAAATGAAGT+AGG | - | chr1_1:10738851-10738870 | None:intergenic | 40.0% | |
| CCTACTTCATTTGCACAAGT+TGG | + | chr1_1:10738848-10738867 | Msa0007470:CDS | 40.0% | |
| ! | CTATGTTTTCCATAGAAGCC+AGG | - | chr1_1:10738887-10738906 | None:intergenic | 40.0% |
| AAATGAGATGAGAGTTGACC+TGG | - | chr1_1:10738955-10738974 | None:intergenic | 40.0% | |
| ! | ATTAAAGGTCCAGTTGATGC+TGG | + | chr1_1:10739746-10739765 | Msa0007470:CDS | 40.0% |
| ATATGGTCAAAAAAGGAGGG+TGG | - | chr1_1:10738634-10738653 | None:intergenic | 40.0% | |
| TTAGTAACAAGGTTGTGCCA+TGG | + | chr1_1:10738745-10738764 | Msa0007470:exon | 40.0% | |
| CCAACTTGTGCAAATGAAGT+AGG | - | chr1_1:10738851-10738870 | None:intergenic | 40.0% | |
| CCTACTTCATTTGCACAAGT+TGG | + | chr1_1:10738848-10738867 | Msa0007470:CDS | 40.0% | |
| ! | CTATGTTTTCCATAGAAGCC+AGG | - | chr1_1:10738887-10738906 | None:intergenic | 40.0% |
| AAATGAGATGAGAGTTGACC+TGG | - | chr1_1:10738955-10738974 | None:intergenic | 40.0% | |
| ! | ATTAAAGGTCCAGTTGATGC+TGG | + | chr1_1:10739746-10739765 | Msa0007470:CDS | 40.0% |
| ! | GTTGGAACTGTTTCTTTCCC+TGG | + | chr1_1:10738866-10738885 | Msa0007470:CDS | 45.0% |
| GTTTCTTTCCCTGGCTTCTA+TGG | + | chr1_1:10738875-10738894 | Msa0007470:CDS | 45.0% | |
| ! | TACCATGGAAGCATAGGATC+TGG | - | chr1_1:10739414-10739433 | None:intergenic | 45.0% |
| AACTAGTGTCGCGTAAACAC+CGG | + | chr1_1:10739623-10739642 | Msa0007470:intron | 45.0% | |
| !! | AGTTGATGCTGGTTCTGGTT+GGG | + | chr1_1:10739757-10739776 | Msa0007470:CDS | 45.0% |
| TCTGGTTGGGATAGATGGTT+TGG | + | chr1_1:10739770-10739789 | Msa0007470:CDS | 45.0% | |
| ACTCTCGAAATCATAAGCGC+TGG | + | chr1_1:10739804-10739823 | Msa0007470:CDS | 45.0% | |
| ! | GTTGGAACTGTTTCTTTCCC+TGG | + | chr1_1:10738866-10738885 | Msa0007470:CDS | 45.0% |
| GTTTCTTTCCCTGGCTTCTA+TGG | + | chr1_1:10738875-10738894 | Msa0007470:CDS | 45.0% | |
| ! | TACCATGGAAGCATAGGATC+TGG | - | chr1_1:10739414-10739433 | None:intergenic | 45.0% |
| AACTAGTGTCGCGTAAACAC+CGG | + | chr1_1:10739623-10739642 | Msa0007470:intron | 45.0% | |
| !! | AGTTGATGCTGGTTCTGGTT+GGG | + | chr1_1:10739757-10739776 | Msa0007470:CDS | 45.0% |
| TCTGGTTGGGATAGATGGTT+TGG | + | chr1_1:10739770-10739789 | Msa0007470:CDS | 45.0% | |
| ACTCTCGAAATCATAAGCGC+TGG | + | chr1_1:10739804-10739823 | Msa0007470:CDS | 45.0% | |
| !!! | TTATTTATATTTTAGTATTA+TGG | + | chr1_1:10738978-10738997 | Msa0007470:intron | 5.0% |
| !!! | TTATTTGTTATATTTAAAAA+GGG | - | chr1_1:10739658-10739677 | None:intergenic | 5.0% |
| !!! | ATTATTTGTTATATTTAAAA+AGG | - | chr1_1:10739659-10739678 | None:intergenic | 5.0% |
| !!! | TTATTTATATTTTAGTATTA+TGG | + | chr1_1:10738978-10738997 | Msa0007470:intron | 5.0% |
| !!! | TTATTTGTTATATTTAAAAA+GGG | - | chr1_1:10739658-10739677 | None:intergenic | 5.0% |
| !!! | ATTATTTGTTATATTTAAAA+AGG | - | chr1_1:10739659-10739678 | None:intergenic | 5.0% |
| TGCTTACTCATTGCAGACCG+TGG | - | chr1_1:10739273-10739292 | None:intergenic | 50.0% | |
| ! | TGGAAGCATAGGATCTGGCA+TGG | - | chr1_1:10739409-10739428 | None:intergenic | 50.0% |
| TGCCAGATCCTATGCTTCCA+TGG | + | chr1_1:10739409-10739428 | Msa0007470:CDS | 50.0% | |
| CAACCAGAACCAGCATCAAC+TGG | - | chr1_1:10739758-10739777 | None:intergenic | 50.0% | |
| !! | CAGTTGATGCTGGTTCTGGT+TGG | + | chr1_1:10739756-10739775 | Msa0007470:CDS | 50.0% |
| !! | CTGGTTCTGGTTGGGATAGA+TGG | + | chr1_1:10739765-10739784 | Msa0007470:CDS | 50.0% |
| ! | GGTTGGGATAGATGGTTTGG+AGG | + | chr1_1:10739773-10739792 | Msa0007470:CDS | 50.0% |
| TGCTTACTCATTGCAGACCG+TGG | - | chr1_1:10739273-10739292 | None:intergenic | 50.0% | |
| ! | TGGAAGCATAGGATCTGGCA+TGG | - | chr1_1:10739409-10739428 | None:intergenic | 50.0% |
| TGCCAGATCCTATGCTTCCA+TGG | + | chr1_1:10739409-10739428 | Msa0007470:CDS | 50.0% | |
| CAACCAGAACCAGCATCAAC+TGG | - | chr1_1:10739758-10739777 | None:intergenic | 50.0% | |
| !! | CAGTTGATGCTGGTTCTGGT+TGG | + | chr1_1:10739756-10739775 | Msa0007470:CDS | 50.0% |
| !! | CTGGTTCTGGTTGGGATAGA+TGG | + | chr1_1:10739765-10739784 | Msa0007470:CDS | 50.0% |
| ! | GGTTGGGATAGATGGTTTGG+AGG | + | chr1_1:10739773-10739792 | Msa0007470:CDS | 50.0% |
| !! | GGTCCAGTTGATGCTGGTTC+TGG | + | chr1_1:10739752-10739771 | Msa0007470:CDS | 55.0% |
| !! | GGTCCAGTTGATGCTGGTTC+TGG | + | chr1_1:10739752-10739771 | Msa0007470:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10738631 | 10740090 | 10738631 | ID=Msa0007470;Name=Msa0007470 |
| chr1_1 | mRNA | 10738631 | 10740090 | 10738631 | ID=Msa0007470-mRNA-1;Parent=Msa0007470;Name=Msa0007470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=133|1|1|1|1|1|4|258|125 |
| chr1_1 | exon | 10738631 | 10738955 | 10738631 | ID=Msa0007470-mRNA-1:exon:3901;Parent=Msa0007470-mRNA-1 |
| chr1_1 | exon | 10739233 | 10739285 | 10739233 | ID=Msa0007470-mRNA-1:exon:3902;Parent=Msa0007470-mRNA-1 |
| chr1_1 | exon | 10739386 | 10739430 | 10739386 | ID=Msa0007470-mRNA-1:exon:3903;Parent=Msa0007470-mRNA-1 |
| chr1_1 | exon | 10739745 | 10740090 | 10739745 | ID=Msa0007470-mRNA-1:exon:3904;Parent=Msa0007470-mRNA-1 |
| chr1_1 | five_prime_UTR | 10738631 | 10738763 | 10738631 | ID=Msa0007470-mRNA-1:five_prime_utr;Parent=Msa0007470-mRNA-1 |
| chr1_1 | CDS | 10738764 | 10738955 | 10738764 | ID=Msa0007470-mRNA-1:cds;Parent=Msa0007470-mRNA-1 |
| chr1_1 | CDS | 10739233 | 10739285 | 10739233 | ID=Msa0007470-mRNA-1:cds;Parent=Msa0007470-mRNA-1 |
| chr1_1 | CDS | 10739386 | 10739430 | 10739386 | ID=Msa0007470-mRNA-1:cds;Parent=Msa0007470-mRNA-1 |
| chr1_1 | CDS | 10739745 | 10739832 | 10739745 | ID=Msa0007470-mRNA-1:cds;Parent=Msa0007470-mRNA-1 |
| chr1_1 | three_prime_UTR | 10739833 | 10740090 | 10739833 | ID=Msa0007470-mRNA-1:three_prime_utr;Parent=Msa0007470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
