AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692710 MtrunA17_Chr4g0076791 90.741 324 10 6 1 319 1 309 0.0 574
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692710 AT2G02500.1 75.893 224 51 1 92 315 82 302 3.79e-124 358
Msa0692710 AT2G02500.2 75.893 224 51 1 92 315 82 302 3.79e-124 358

Find 108 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTTCCTCTTCTTC+TGG 0.093616 4_4:-61350741 Msa0692710:CDS
CATTCAACAATCCATCTTTA+AGG 0.143755 4_4:+61348506 None:intergenic
GGCGAGAGGCGGATATGTTT+TGG 0.207225 4_4:+61350932 None:intergenic
TTGAATGGAGCTGCTGTTCT+TGG 0.281782 4_4:-61348490 Msa0692710:CDS
GGATGATATTTAATCAAGTT+TGG 0.290779 4_4:-61345095 Msa0692710:three_prime_UTR
GTTACAAGAAGATGTGAAAA+AGG 0.291390 4_4:-61349059 Msa0692710:intron
TCTTCTCTTCCTCTTCTTCT+GGG 0.292050 4_4:-61350740 Msa0692710:CDS
AATAAAATAAAATAAGCTAT+TGG 0.297394 4_4:+61350903 None:intergenic
TGATATAAACAGGATGTTTA+AGG 0.309094 4_4:+61346457 None:intergenic
AGAATATTGAATATAAATTC+TGG 0.325941 4_4:-61345357 Msa0692710:CDS
TTCTGTTTACAATGGCCTTC+AGG 0.333766 4_4:-61349845 Msa0692710:CDS
GTCTGGTTGGCAATTTCCTT+TGG 0.336442 4_4:+61349903 None:intergenic
AAGGCTTTGAGCTTGTAAAT+AGG 0.349441 4_4:-61346789 Msa0692710:intron
ATAAAATAAAATAAGCTATT+GGG 0.365478 4_4:+61350904 None:intergenic
TCCTTGATTGTGGCCTTCAC+AGG 0.375394 4_4:+61348463 None:intergenic
TTTCCCTTCAATGGTGAGAT+TGG 0.375566 4_4:+61345311 None:intergenic
ACAGAGCTAAACAAAATAAC+CGG 0.387502 4_4:+61350815 None:intergenic
TCCTACAACGACATCTTTCA+AGG 0.389033 4_4:-61350022 Msa0692710:intron
TTTACTTGGGCGGTGGGAAG+TGG 0.392564 4_4:+61350492 None:intergenic
AAAGCAATATCTTCCTCTCT+TGG 0.394637 4_4:-61350206 Msa0692710:CDS
GTTGTAAGAGATTTGATTGT+TGG 0.413235 4_4:+61350707 None:intergenic
GGCAGTGCAAATTTGAGGTC+TGG 0.415366 4_4:+61349886 None:intergenic
ATAAAATAAGCTATTGGGCT+CGG 0.418467 4_4:+61350909 None:intergenic
GATCCTTCGGTGATATAAAC+AGG 0.418697 4_4:+61346447 None:intergenic
GACCTCAAATTTGCACTGCC+TGG 0.426209 4_4:-61349883 Msa0692710:CDS
TAAAATAAGCTATTGGGCTC+GGG 0.427686 4_4:+61350910 None:intergenic
TTCCAGGCAGTGCAAATTTG+AGG 0.431618 4_4:+61349881 None:intergenic
TGACAATGATTTCCCTTCAA+TGG 0.442828 4_4:+61345302 None:intergenic
CTTAAAGATGGATTGTTGAA+TGG 0.444390 4_4:-61348505 Msa0692710:CDS
TGGAGGGAAGGGCAAGAGAA+TGG 0.444644 4_4:-61350318 Msa0692710:CDS
CATCCCATTGCATGGGGCAC+TGG 0.449643 4_4:+61345113 None:intergenic
ACATCTTCTTGTAACACTAA+AGG 0.457853 4_4:+61349067 None:intergenic
GAATATTGAATATAAATTCT+GGG 0.460313 4_4:-61345356 Msa0692710:CDS
TTTGCCAATCTCACCATTGA+AGG 0.469458 4_4:-61345315 Msa0692710:three_prime_UTR
TGTACTGCTCGCTGGAGGGA+AGG 0.473433 4_4:-61350330 Msa0692710:CDS
CCCTGTGAAGGCCACAATCA+AGG 0.478877 4_4:-61348464 Msa0692710:CDS
GATGTTGGTATAAGATCCTT+CGG 0.478970 4_4:+61346434 None:intergenic
TTCTTTGACTTGAAGCATGC+GGG 0.479021 4_4:+61350066 None:intergenic
GGAGGGAAGGGCAAGAGAAT+GGG 0.479045 4_4:-61350317 Msa0692710:CDS
AAGTTTGGCAAACATGATAA+AGG 0.480202 4_4:-61345080 Msa0692710:three_prime_UTR
AAGCAATATCTTCCTCTCTT+GGG 0.480844 4_4:-61350205 Msa0692710:CDS
TTGTAAGAGATTTGATTGTT+GGG 0.483226 4_4:+61350708 None:intergenic
TCTGCTAGTAATAAATCATC+AGG 0.483357 4_4:+61345381 None:intergenic
TTACCAGTGCCCCATGCAAT+GGG 0.484640 4_4:-61345116 Msa0692710:three_prime_UTR
AAGAGAGGAAGATATTGCTT+TGG 0.484756 4_4:+61350208 None:intergenic
TCATCAATCTCTTCTTCTCC+CGG 0.494849 4_4:-61350834 Msa0692710:five_prime_UTR
TTGTTGTTTATAGATATTTG+AGG 0.495140 4_4:+61350570 None:intergenic
ATTACCAGTGCCCCATGCAA+TGG 0.495295 4_4:-61345117 Msa0692710:three_prime_UTR
AAGCCTTTCCTCAGCAACTC+GGG 0.500793 4_4:+61346805 None:intergenic
ACAACTACAACTACAGCTAC+AGG 0.503881 4_4:-61350689 Msa0692710:intron
ACCTTGAAAGATGTCGTTGT+AGG 0.518450 4_4:+61350021 None:intergenic
TCCGTTGTACTGCTCGCTGG+AGG 0.520002 4_4:-61350335 Msa0692710:CDS
GCTATTGGGCTCGGGGCGAG+AGG 0.520382 4_4:+61350918 None:intergenic
TGTTCTTGGTGTCCCTGTGA+AGG 0.523023 4_4:-61348476 Msa0692710:CDS
TTAAATATCATCCCATTGCA+TGG 0.524143 4_4:+61345105 None:intergenic
GGCAAACACCGAATCATTTG+TGG 0.525156 4_4:-61346968 Msa0692710:CDS
ACGTACCTATAGAGTGCAAT+GGG 0.526287 4_4:+61350178 None:intergenic
AAGAGATTTGATTGTTGGGA+AGG 0.526441 4_4:+61350712 None:intergenic
GTTTCTGCAGGAACAGGAGA+AGG 0.526926 4_4:-61350384 Msa0692710:intron
TGTTCTGACCACAAATGATT+CGG 0.528120 4_4:+61346960 None:intergenic
GTCTCCGTTGTACTGCTCGC+TGG 0.529677 4_4:-61350338 Msa0692710:CDS
TAGTTAGTTTACTTGGGCGG+TGG 0.529919 4_4:+61350485 None:intergenic
AAAGCCTTTCCTCAGCAACT+CGG 0.529936 4_4:+61346804 None:intergenic
GCCAACCCATTGCACTCTAT+AGG 0.532866 4_4:-61350183 Msa0692710:intron
ATCATTTGTGGTCAGAACAC+TGG 0.533413 4_4:-61346956 Msa0692710:CDS
GTACTGCTCGCTGGAGGGAA+GGG 0.538751 4_4:-61350329 Msa0692710:CDS
TAAATATCATCCCATTGCAT+GGG 0.545245 4_4:+61345106 None:intergenic
TCACTGTTACTGTAGTAGTC+AGG 0.546506 4_4:-61350599 Msa0692710:intron
AGAGATTTGATTGTTGGGAA+GGG 0.547132 4_4:+61350713 None:intergenic
ATTGGGCTCGGGGCGAGAGG+CGG 0.547153 4_4:+61350921 None:intergenic
AAGGGCAATCCCAGAAGAAG+AGG 0.559832 4_4:+61350731 None:intergenic
GTGCAAATTTGAGGTCTGGT+TGG 0.560440 4_4:+61349890 None:intergenic
TTGCCAATCTCACCATTGAA+GGG 0.564403 4_4:-61345314 Msa0692710:three_prime_UTR
TACTGACGATGTTTCCATTG+TGG 0.566054 4_4:-61346484 Msa0692710:CDS
CCTTGATTGTGGCCTTCACA+GGG 0.566587 4_4:+61348464 None:intergenic
ATAGTTGACTACCTTGATGT+TGG 0.566657 4_4:+61346419 None:intergenic
GTTACTGTAGTAGTCAGGTC+AGG 0.572380 4_4:-61350594 Msa0692710:intron
ACTGAATACCTCCTTGATTG+TGG 0.574579 4_4:+61348453 None:intergenic
GTTTAGCTCTGTGTGAGAGA+TGG 0.575357 4_4:-61350804 Msa0692710:exon
AGCAGCAGCATAACATATTG+AGG 0.575565 4_4:+61350521 None:intergenic
ACCTATAGAGTGCAATGGGT+TGG 0.578481 4_4:+61350182 None:intergenic
AGTTAGTTTACTTGGGCGGT+GGG 0.578835 4_4:+61350486 None:intergenic
ACTGCCTGGAAAAGAAAGAC+AGG 0.579109 4_4:-61349869 Msa0692710:CDS
CCGTTGTACTGCTCGCTGGA+GGG 0.579349 4_4:-61350334 Msa0692710:CDS
ATGGGAGATGCAGACTCCAC+AGG 0.579587 4_4:-61346920 Msa0692710:intron
TACGTACCTATAGAGTGCAA+TGG 0.580532 4_4:+61350177 None:intergenic
AGGAAGATATTGCTTTGGCA+TGG 0.591255 4_4:+61350213 None:intergenic
TGAAAGATGTCGTTGTAGGA+AGG 0.591296 4_4:+61350025 None:intergenic
AATATTGAATATAAATTCTG+GGG 0.599667 4_4:-61345355 Msa0692710:CDS
AAAATAAGCTATTGGGCTCG+GGG 0.599737 4_4:+61350911 None:intergenic
AGAAAACAGCACATTCCTGA+AGG 0.603136 4_4:+61349830 None:intergenic
ATGTTTAAGGTGCTCCACAA+TGG 0.606587 4_4:+61346470 None:intergenic
AAAAGGGAAATGTTTCCGCA+TGG 0.608233 4_4:-61345158 Msa0692710:three_prime_UTR
CCCTCCAGCGAGCAGTACAA+CGG 0.611991 4_4:+61350334 None:intergenic
AGGATCTTATACCAACATCA+AGG 0.612493 4_4:-61346430 Msa0692710:intron
GCAATGGGTTGGCCCAAGAG+AGG 0.612871 4_4:+61350193 None:intergenic
TTTCTTTGACTTGAAGCATG+CGG 0.613225 4_4:+61350065 None:intergenic
CAGAGCTAAACAAAATAACC+GGG 0.619279 4_4:+61350816 None:intergenic
AAACCCGAGTTGCTGAGGAA+AGG 0.625305 4_4:-61346808 Msa0692710:CDS
CATCCTGTTTATATCACCGA+AGG 0.627709 4_4:-61346450 Msa0692710:CDS
AGACAGGATTCTGTTTACAA+TGG 0.632163 4_4:-61349853 Msa0692710:CDS
TTATCAAACCCGAGTTGCTG+AGG 0.632450 4_4:-61346813 Msa0692710:CDS
GAGATTTGTGTAAAAGCACA+TGG 0.633575 4_4:-61345193 Msa0692710:three_prime_UTR
AGTTAGTTAGTTTACTTGGG+CGG 0.642157 4_4:+61350482 None:intergenic
CCCCTCCCCTCAGATGCCAA+AGG 0.647197 4_4:-61349919 Msa0692710:intron
AAATATCATCCCATTGCATG+GGG 0.663493 4_4:+61345107 None:intergenic
AGTAGATTTCTTCTACCATG+CGG 0.673412 4_4:+61345143 None:intergenic
TGTGAAGGCCACAATCAAGG+AGG 0.756192 4_4:-61348461 Msa0692710:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTTATTTTTAT+CGG + chr4_4:61345165-61345184 None:intergenic 0.0%
!! TAAATAATAATATTATTAAT+AGG + chr4_4:61346085-61346104 None:intergenic 0.0%
!! ATAAAATAAAATAAGCTATT+GGG + chr4_4:61345126-61345145 None:intergenic 10.0%
!! AATAAAATAAAATAAGCTAT+TGG + chr4_4:61345127-61345146 None:intergenic 10.0%
!! AATTTCTTCTTATTATAAAT+AGG - chr4_4:61345788-61345807 Msa0692710:intron 10.0%
!! ATGCATTTAATAATAATATA+AGG + chr4_4:61346883-61346902 None:intergenic 10.0%
!! ATTTCTTATAAAGTAAATAT+AGG - chr4_4:61348186-61348205 Msa0692710:intron 10.0%
!!! ATGTATATTTCATTTAATTT+TGG - chr4_4:61349149-61349168 Msa0692710:intron 10.0%
!! ATTTAAAAAATTAATTGACT+TGG - chr4_4:61350470-61350489 Msa0692710:intron 10.0%
!!! AAATTTATATATTTTGTATC+AGG + chr4_4:61350600-61350619 None:intergenic 10.0%
!! GATTGATTAATGTTATAAAA+AGG + chr4_4:61345768-61345787 None:intergenic 15.0%
!! TAAGTTAAATTGTAAAGAAA+TGG + chr4_4:61345909-61345928 None:intergenic 15.0%
!! TTAGAAATTTATTGAAAATG+CGG + chr4_4:61346668-61346687 None:intergenic 15.0%
!! AGTTTGCATAAATAAAAATT+GGG - chr4_4:61346789-61346808 Msa0692710:intron 15.0%
!!! TTATTAAATGCATTTTTTAC+AGG - chr4_4:61346890-61346909 Msa0692710:intron 15.0%
!! TAAAATTCAGAAAAATTAAG+CGG + chr4_4:61347036-61347055 None:intergenic 15.0%
!! TATAGATAAGTAATATAAGT+AGG + chr4_4:61347487-61347506 None:intergenic 15.0%
!! AAAAATAAAACAAACAAAAG+AGG - chr4_4:61347674-61347693 Msa0692710:intron 15.0%
!! TATTTACTTTATAAGAAATG+AGG + chr4_4:61348185-61348204 None:intergenic 15.0%
!! TTAAAGAAATGAAAAATAGA+AGG - chr4_4:61348331-61348350 Msa0692710:intron 15.0%
!! AAACATTATACAAAAAATAG+AGG - chr4_4:61348461-61348480 Msa0692710:intron 15.0%
!! AGTATTTCTTCAATAAAAAA+AGG + chr4_4:61349929-61349948 None:intergenic 15.0%
!! TATTTATTATATGAGAAGTT+GGG + chr4_4:61349972-61349991 None:intergenic 15.0%
!! AATTTGGATAAATAACTAAA+GGG + chr4_4:61350205-61350224 None:intergenic 15.0%
!! ATAATTCTATCTAATCTAAT+GGG + chr4_4:61350290-61350309 None:intergenic 15.0%
!! TTAAATAGTATACATGATTT+AGG + chr4_4:61350419-61350438 None:intergenic 15.0%
!! AGAATATTGAATATAAATTC+TGG - chr4_4:61350670-61350689 Msa0692710:intron 15.0%
!! GAATATTGAATATAAATTCT+GGG - chr4_4:61350671-61350690 Msa0692710:intron 15.0%
!! AATATTGAATATAAATTCTG+GGG - chr4_4:61350672-61350691 Msa0692710:intron 15.0%
!!! TTGTTGTTTATAGATATTTG+AGG + chr4_4:61345460-61345479 None:intergenic 20.0%
!! AATATTATTAATAGGCAAGA+GGG + chr4_4:61346077-61346096 None:intergenic 20.0%
!! TAATATTATTAATAGGCAAG+AGG + chr4_4:61346078-61346097 None:intergenic 20.0%
!! TATAAAATTGAGCTAAAGAA+AGG + chr4_4:61346270-61346289 None:intergenic 20.0%
!!! GCTCAATTTTATATTAATTC+AGG - chr4_4:61346277-61346296 Msa0692710:intron 20.0%
!! TATGTCTGATAAAAATGTAT+GGG + chr4_4:61346391-61346410 None:intergenic 20.0%
!! ATATGTCTGATAAAAATGTA+TGG + chr4_4:61346392-61346411 None:intergenic 20.0%
!!! CATTTTTATCAGACATATTT+TGG - chr4_4:61346394-61346413 Msa0692710:intron 20.0%
!! CAATTTATTAACTATGTGTT+TGG + chr4_4:61346632-61346651 None:intergenic 20.0%
!! CAAACACATAGTTAATAAAT+TGG - chr4_4:61346630-61346649 Msa0692710:intron 20.0%
!! TAGAAATTTATTGAAAATGC+GGG + chr4_4:61346667-61346686 None:intergenic 20.0%
!! AACAGTTAATTAATCTTACA+TGG + chr4_4:61346733-61346752 None:intergenic 20.0%
!! GAGTTTGCATAAATAAAAAT+TGG - chr4_4:61346788-61346807 Msa0692710:intron 20.0%
!! TACATTTATGTTATTGTCAA+TGG - chr4_4:61347165-61347184 Msa0692710:intron 20.0%
!!! CTTATCTATATTCTGTTTTA+AGG - chr4_4:61347497-61347516 Msa0692710:intron 20.0%
!! ATAACTATTAACTAATGTCT+AGG + chr4_4:61347934-61347953 None:intergenic 20.0%
!! CTCAATATTCCAAAATAAAA+CGG + chr4_4:61348392-61348411 None:intergenic 20.0%
!!! TTTTATTTTGGAATATTGAG+TGG - chr4_4:61348392-61348411 Msa0692710:intron 20.0%
!!! TTTATTTTGGAATATTGAGT+GGG - chr4_4:61348393-61348412 Msa0692710:intron 20.0%
!!! TAATTTGCAAGGAAAATAAT+GGG + chr4_4:61348667-61348686 None:intergenic 20.0%
!!! TATTTTTGTTTGTTCATACT+TGG - chr4_4:61348880-61348899 Msa0692710:intron 20.0%
!! TTCATAAATAACTGAAGAAT+AGG + chr4_4:61349303-61349322 None:intergenic 20.0%
!!! TAAAGCTTTGTAAGTAATAA+AGG + chr4_4:61349659-61349678 None:intergenic 20.0%
!!! TGTTCATATTAGTTGTTTTT+AGG - chr4_4:61349885-61349904 Msa0692710:CDS 20.0%
!! GTATTTATTATATGAGAAGT+TGG + chr4_4:61349973-61349992 None:intergenic 20.0%
!!! ATTTGTTAAGGAATCAAAAA+AGG + chr4_4:61350157-61350176 None:intergenic 20.0%
!! GAATTTGGATAAATAACTAA+AGG + chr4_4:61350206-61350225 None:intergenic 20.0%
!! CATAATTCTATCTAATCTAA+TGG + chr4_4:61350291-61350310 None:intergenic 20.0%
!! CATTAGATTAGATAGAATTA+TGG - chr4_4:61350289-61350308 Msa0692710:intron 20.0%
!! GGATAGTTAATATGTTAAAA+AGG + chr4_4:61350373-61350392 None:intergenic 20.0%
!!! TTCTTTTTGACAAATGATTT+AGG + chr4_4:61350394-61350413 None:intergenic 20.0%
! TTGTAAGAGATTTGATTGTT+GGG + chr4_4:61345322-61345341 None:intergenic 25.0%
! TTGAATTGAATCGAATTGAA+TGG + chr4_4:61345580-61345599 None:intergenic 25.0%
! AATTCAATTACTCTACTATG+AGG - chr4_4:61345593-61345612 Msa0692710:intron 25.0%
! AGACATTTCTATATTTACTG+TGG + chr4_4:61346426-61346445 None:intergenic 25.0%
! CAGTAAATATAGAAATGTCT+AGG - chr4_4:61346426-61346445 Msa0692710:intron 25.0%
! TAGATATCAAAATGTGTCTT+TGG - chr4_4:61346526-61346545 Msa0692710:intron 25.0%
!! AAAATGTGTCTTTGGAAAAT+TGG - chr4_4:61346534-61346553 Msa0692710:intron 25.0%
!! AAATGTGTCTTTGGAAAATT+GGG - chr4_4:61346535-61346554 Msa0692710:intron 25.0%
! TAGTTAATAAATTGGCATTC+TGG - chr4_4:61346638-61346657 Msa0692710:intron 25.0%
! AAGATTAATTAACTGTTGTC+AGG - chr4_4:61346736-61346755 Msa0692710:intron 25.0%
! AGATTAATTAACTGTTGTCA+GGG - chr4_4:61346737-61346756 Msa0692710:intron 25.0%
! GTTATTGTCAATGGTTTATA+TGG - chr4_4:61347174-61347193 Msa0692710:intron 25.0%
!! ATGTGTCTGTACATTTTTAA+TGG - chr4_4:61347360-61347379 Msa0692710:intron 25.0%
!! AATGCACATTTGACATATTT+TGG - chr4_4:61347388-61347407 Msa0692710:intron 25.0%
!!! ACATTTGACATATTTTGGAT+AGG - chr4_4:61347393-61347412 Msa0692710:intron 25.0%
!!! CATTTGACATATTTTGGATA+GGG - chr4_4:61347394-61347413 Msa0692710:intron 25.0%
! GATAAGTAATATAAGTAGGT+AGG + chr4_4:61347483-61347502 None:intergenic 25.0%
! TTTCTTACGATTATTGTAAG+TGG - chr4_4:61347614-61347633 Msa0692710:intron 25.0%
!!! CTTAACCATTTTCAAGAAAA+AGG - chr4_4:61347706-61347725 Msa0692710:intron 25.0%
!!! TTGAAGGATTTTATTTTCAC+TGG + chr4_4:61347740-61347759 None:intergenic 25.0%
! ATATAGGATACGATACATTT+AGG - chr4_4:61348202-61348221 Msa0692710:intron 25.0%
! ACTTAAGAAAAAGAAGACAT+CGG - chr4_4:61348361-61348380 Msa0692710:intron 25.0%
!! CTAATTTGCAAGGAAAATAA+TGG + chr4_4:61348668-61348687 None:intergenic 25.0%
!!! ATTAATTGTGCAAAAGTACT+TGG + chr4_4:61348740-61348759 None:intergenic 25.0%
! TGAAATTATCAATTTGAGCT+TGG - chr4_4:61348961-61348980 Msa0692710:intron 25.0%
! GAAATTATCAATTTGAGCTT+GGG - chr4_4:61348962-61348981 Msa0692710:intron 25.0%
!!! ATTATTTTCAAGTCCATCAA+GGG + chr4_4:61349013-61349032 None:intergenic 25.0%
!!! AAACTTGTTACTACATATTC+TGG + chr4_4:61349415-61349434 None:intergenic 25.0%
!! GTAACAAGTTTAGAGAATTT+TGG - chr4_4:61349424-61349443 Msa0692710:intron 25.0%
!!! AGAATTTTGGTTTCATCATT+CGG - chr4_4:61349437-61349456 Msa0692710:intron 25.0%
! TGATATAAACAGGATGTTTA+AGG + chr4_4:61349573-61349592 None:intergenic 25.0%
! AACCTGTAACTTATATCATT+TGG - chr4_4:61349680-61349699 Msa0692710:intron 25.0%
! TACCAAATGATATAAGTTAC+AGG + chr4_4:61349685-61349704 None:intergenic 25.0%
! AGTTCTTTCAAACATTGATA+CGG + chr4_4:61349845-61349864 None:intergenic 25.0%
! TGTAAAAAACATAACTTCAG+TGG + chr4_4:61350550-61350569 None:intergenic 25.0%
!!! ATTGATTTTTGAACTGCAAA+AGG - chr4_4:61350770-61350789 Msa0692710:CDS 25.0%
! GGATGATATTTAATCAAGTT+TGG - chr4_4:61350932-61350951 Msa0692710:five_prime_UTR 25.0%
!! TATTTCACTTTTCAGCTTCA+TGG - chr4_4:61345065-61345084 Msa0692710:three_prime_UTR 30.0%
!! ATTTCACTTTTCAGCTTCAT+GGG - chr4_4:61345066-61345085 Msa0692710:three_prime_UTR 30.0%
ATAAAATAAGCTATTGGGCT+CGG + chr4_4:61345121-61345140 None:intergenic 30.0%
ACAGAGCTAAACAAAATAAC+CGG + chr4_4:61345215-61345234 None:intergenic 30.0%
GTTGTAAGAGATTTGATTGT+TGG + chr4_4:61345323-61345342 None:intergenic 30.0%
! AGGAGTTAGTTAGTTTACTT+GGG + chr4_4:61345551-61345570 None:intergenic 30.0%
TGAATCGAATTGAATGGAAA+AGG + chr4_4:61345574-61345593 None:intergenic 30.0%
TGTAGAAACTGCAAGATATA+AGG + chr4_4:61345935-61345954 None:intergenic 30.0%
AAAGACATGACATAGTGTTA+TGG + chr4_4:61346054-61346073 None:intergenic 30.0%
!!! CTAATGATCATTGTTTTGGA+AGG + chr4_4:61346327-61346346 None:intergenic 30.0%
! TCAGCTAATGATCATTGTTT+TGG + chr4_4:61346331-61346350 None:intergenic 30.0%
! AATGTGTCTTTGGAAAATTG+GGG - chr4_4:61346536-61346555 Msa0692710:intron 30.0%
GCTAGATATCATAGAGTTAA+TGG + chr4_4:61346583-61346602 None:intergenic 30.0%
AAACAGACTGTTCAAAATGT+TGG - chr4_4:61346704-61346723 Msa0692710:intron 30.0%
ACATCTTCTTGTAACACTAA+AGG + chr4_4:61346963-61346982 None:intergenic 30.0%
GTTACAAGAAGATGTGAAAA+AGG - chr4_4:61346968-61346987 Msa0692710:CDS 30.0%
AGAAGATGTGAAAAAGGTTT+CGG - chr4_4:61346974-61346993 Msa0692710:intron 30.0%
!! TTAGTTTAGTGAGAGTGTTA+TGG - chr4_4:61347095-61347114 Msa0692710:intron 30.0%
! AAGAGTCTAAAATCATGTTG+AGG - chr4_4:61347248-61347267 Msa0692710:intron 30.0%
! TTTTATCAAGACTCTGTCAT+TGG + chr4_4:61347312-61347331 None:intergenic 30.0%
!! ATAAAAGTGCTCGTGTTATT+TGG - chr4_4:61347326-61347345 Msa0692710:intron 30.0%
!!! TGTTTTAAGGTCCTTAAAGA+TGG - chr4_4:61347510-61347529 Msa0692710:intron 30.0%
CATTCAACAATCCATCTTTA+AGG + chr4_4:61347524-61347543 None:intergenic 30.0%
!! CTTAAAGATGGATTGTTGAA+TGG - chr4_4:61347522-61347541 Msa0692710:intron 30.0%
! CATCACCTTTTTCTTGAAAA+TGG + chr4_4:61347714-61347733 None:intergenic 30.0%
! ATGGTAATCAGAGTTTTTGA+AGG + chr4_4:61347756-61347775 None:intergenic 30.0%
!!! GTTTTCTGCCTTTTTTTAGA+GGG + chr4_4:61347821-61347840 None:intergenic 30.0%
!!! AGTTTTCTGCCTTTTTTTAG+AGG + chr4_4:61347822-61347841 None:intergenic 30.0%
CTAAATGACACCTAAGATTT+AGG - chr4_4:61347855-61347874 Msa0692710:intron 30.0%
TAGTTAATAGTTATGCCCTA+TGG - chr4_4:61347940-61347959 Msa0692710:intron 30.0%
AGTTAATAGTTATGCCCTAT+GGG - chr4_4:61347941-61347960 Msa0692710:intron 30.0%
! GCATTTAAAATTTAGTGCCT+AGG - chr4_4:61348018-61348037 Msa0692710:intron 30.0%
GATTCAATACATATCCGATA+TGG - chr4_4:61348154-61348173 Msa0692710:intron 30.0%
TCATTTGCATGTTTATTCTC+TGG + chr4_4:61348297-61348316 None:intergenic 30.0%
ATCGTATTCACTAGTATTGT+GGG + chr4_4:61348624-61348643 None:intergenic 30.0%
AATCGTATTCACTAGTATTG+TGG + chr4_4:61348625-61348644 None:intergenic 30.0%
ATCACCAATTTCTGTAAACT+TGG + chr4_4:61348702-61348721 None:intergenic 30.0%
!!! CATTATTTTCAAGTCCATCA+AGG + chr4_4:61349014-61349033 None:intergenic 30.0%
! TATACCAGTTAGTTTCAGAA+AGG + chr4_4:61349486-61349505 None:intergenic 30.0%
TAGTCAACTATATTCTCTCT+TGG - chr4_4:61349620-61349639 Msa0692710:intron 30.0%
!! TGAACTTAACTTGTGACATA+AGG - chr4_4:61349818-61349837 Msa0692710:intron 30.0%
ATAAGCTCGCAATTAAGTTA+TGG - chr4_4:61350000-61350019 Msa0692710:intron 30.0%
TAAGCTCGCAATTAAGTTAT+GGG - chr4_4:61350001-61350020 Msa0692710:intron 30.0%
!! AAAATTTTCAGGCATCAAAG+GGG + chr4_4:61350229-61350248 None:intergenic 30.0%
!! CAAAATTTTCAGGCATCAAA+GGG + chr4_4:61350230-61350249 None:intergenic 30.0%
! CCTGAAAATTTTGCACTTTT+GGG - chr4_4:61350237-61350256 Msa0692710:intron 30.0%
TCTGCTAGTAATAAATCATC+AGG + chr4_4:61350649-61350668 None:intergenic 30.0%
!!! ATTTCCCTTTTTTAAGGCAA+TGG + chr4_4:61350860-61350879 None:intergenic 30.0%
!!! GGAAACATTTCCCTTTTTTA+AGG + chr4_4:61350866-61350885 None:intergenic 30.0%
TAAATATCATCCCATTGCAT+GGG + chr4_4:61350924-61350943 None:intergenic 30.0%
TTAAATATCATCCCATTGCA+TGG + chr4_4:61350925-61350944 None:intergenic 30.0%
AAGTTTGGCAAACATGATAA+AGG - chr4_4:61350947-61350966 Msa0692710:five_prime_UTR 30.0%
TAAAATAAGCTATTGGGCTC+GGG + chr4_4:61345120-61345139 None:intergenic 35.0%
CAGAGCTAAACAAAATAACC+GGG + chr4_4:61345214-61345233 None:intergenic 35.0%
AGAGATTTGATTGTTGGGAA+GGG + chr4_4:61345317-61345336 None:intergenic 35.0%
AAGAGATTTGATTGTTGGGA+AGG + chr4_4:61345318-61345337 None:intergenic 35.0%
! AGTTAGTTAGTTTACTTGGG+CGG + chr4_4:61345548-61345567 None:intergenic 35.0%
! GAGGAGTTAGTTAGTTTACT+TGG + chr4_4:61345552-61345571 None:intergenic 35.0%
ATCGAATTGAATGGAAAAGG+AGG + chr4_4:61345571-61345590 None:intergenic 35.0%
!! GTTTGTTTGTTTGTTTCTGC+AGG - chr4_4:61345631-61345650 Msa0692710:intron 35.0%
AAGAGAGGAAGATATTGCTT+TGG + chr4_4:61345822-61345841 None:intergenic 35.0%
AAAGCAATATCTTCCTCTCT+TGG - chr4_4:61345821-61345840 Msa0692710:intron 35.0%
AAGCAATATCTTCCTCTCTT+GGG - chr4_4:61345822-61345841 Msa0692710:intron 35.0%
!! TTTCTTTGACTTGAAGCATG+CGG + chr4_4:61345965-61345984 None:intergenic 35.0%
AGTGTTATGGAAGAAAGAAG+AGG + chr4_4:61346041-61346060 None:intergenic 35.0%
AGACAGGATTCTGTTTACAA+TGG - chr4_4:61346174-61346193 Msa0692710:intron 35.0%
! AGAGGTATGAAAAGAAACTC+TGG + chr4_4:61346303-61346322 None:intergenic 35.0%
!!! ATCATTGTTTTGGAAGGAAG+AGG + chr4_4:61346321-61346340 None:intergenic 35.0%
TTAACCAAATGGCAAGATTC+GGG + chr4_4:61346364-61346383 None:intergenic 35.0%
GTTAACCAAATGGCAAGATT+CGG + chr4_4:61346365-61346384 None:intergenic 35.0%
AAGCACAAAATCACATTGCT+AGG - chr4_4:61346461-61346480 Msa0692710:CDS 35.0%
! ACTCTATGATATCTAGCTTC+AGG - chr4_4:61346586-61346605 Msa0692710:intron 35.0%
!! TTTAGTGAGAGTGTTATGGA+AGG - chr4_4:61347099-61347118 Msa0692710:intron 35.0%
TTTAGACTCTTGAGTGACAA+AGG + chr4_4:61347239-61347258 None:intergenic 35.0%
! TGTCTGAAATCCAATGTCTT+TGG - chr4_4:61347280-61347299 Msa0692710:intron 35.0%
AAGGAGACTATGAGATTCTA+TGG + chr4_4:61347775-61347794 None:intergenic 35.0%
! TGCATTCTCCCTCTAAAAAA+AGG - chr4_4:61347810-61347829 Msa0692710:intron 35.0%
AGAAGATTCCGATATATGGT+CGG - chr4_4:61347904-61347923 Msa0692710:intron 35.0%
!! GGTTCTATTCTAAAGTGCAT+AGG - chr4_4:61347996-61348015 Msa0692710:intron 35.0%
! ACCAAAGCTAGACTTTTGAA+GGG + chr4_4:61348085-61348104 None:intergenic 35.0%
GTATTGTATCTGTGCATCAT+AGG + chr4_4:61348126-61348145 None:intergenic 35.0%
CACAGATACAATACGAGTAT+CGG - chr4_4:61348132-61348151 Msa0692710:intron 35.0%
AAGAAAAAGAAGACATCGGT+TGG - chr4_4:61348365-61348384 Msa0692710:intron 35.0%
!!! TTTTGGAATATTGAGTGGGT+TGG - chr4_4:61348397-61348416 Msa0692710:intron 35.0%
!!! CTCATGCTCTGTTTTTTCTT+CGG + chr4_4:61348493-61348512 None:intergenic 35.0%
AAAACAGAGCATGAGGTAAT+TGG - chr4_4:61348498-61348517 Msa0692710:CDS 35.0%
ATATGATTCCTTAGTCTCTG+TGG + chr4_4:61348561-61348580 None:intergenic 35.0%
GAGACTAAGGAATCATATCA+AGG - chr4_4:61348563-61348582 Msa0692710:intron 35.0%
ACTAGTATTGTGGGATTTAC+TGG + chr4_4:61348615-61348634 None:intergenic 35.0%
! TGTTTGTGTGCTAATTTGCA+AGG + chr4_4:61348678-61348697 None:intergenic 35.0%
ACAGCCAAGTTTACAGAAAT+TGG - chr4_4:61348695-61348714 Msa0692710:intron 35.0%
! ATTTAGTCACTTTCCCTTGA+TGG - chr4_4:61348997-61349016 Msa0692710:intron 35.0%
TGTTCTGACCACAAATGATT+CGG + chr4_4:61349070-61349089 None:intergenic 35.0%
ACTGGATAGAAAAACGCTAT+GGG - chr4_4:61349089-61349108 Msa0692710:CDS 35.0%
!! AAGGCTTTGAGCTTGTAAAT+AGG - chr4_4:61349238-61349257 Msa0692710:intron 35.0%
GATAGCTCTTGGTTCATATA+GGG + chr4_4:61349352-61349371 None:intergenic 35.0%
CAATATGTTTGGATAGCTCT+TGG + chr4_4:61349363-61349382 None:intergenic 35.0%
GATGTTGGTATAAGATCCTT+CGG + chr4_4:61349596-61349615 None:intergenic 35.0%
AGGATCTTATACCAACATCA+AGG - chr4_4:61349597-61349616 Msa0692710:intron 35.0%
ATAGTTGACTACCTTGATGT+TGG + chr4_4:61349611-61349630 None:intergenic 35.0%
CAACTATATTCTCTCTTGGT+AGG - chr4_4:61349624-61349643 Msa0692710:intron 35.0%
TATATTCTCTCTTGGTAGGA+TGG - chr4_4:61349628-61349647 Msa0692710:intron 35.0%
! ACTACTACTAGAGCATCATA+TGG + chr4_4:61349708-61349727 None:intergenic 35.0%
GTAGTAGTACAGCTACTATA+TGG - chr4_4:61349720-61349739 Msa0692710:intron 35.0%
ATTCCTTAACAAATGCCCTA+AGG - chr4_4:61350163-61350182 Msa0692710:intron 35.0%
TTCCTTAACAAATGCCCTAA+GGG - chr4_4:61350164-61350183 Msa0692710:intron 35.0%
!! AAATTTTCAGGCATCAAAGG+GGG + chr4_4:61350228-61350247 None:intergenic 35.0%
!! GCAAAATTTTCAGGCATCAA+AGG + chr4_4:61350231-61350250 None:intergenic 35.0%
! GCCTGAAAATTTTGCACTTT+TGG - chr4_4:61350236-61350255 Msa0692710:intron 35.0%
!! CCCAAAAGTGCAAAATTTTC+AGG + chr4_4:61350240-61350259 None:intergenic 35.0%
! AAATTTTGCACTTTTGGGCT+TGG - chr4_4:61350242-61350261 Msa0692710:intron 35.0%
! AATTTTGCACTTTTGGGCTT+GGG - chr4_4:61350243-61350262 Msa0692710:intron 35.0%
! AATTTCTTGCCATGTTTTGC+AGG - chr4_4:61350615-61350634 Msa0692710:intron 35.0%
TGACAATGATTTCCCTTCAA+TGG + chr4_4:61350728-61350747 None:intergenic 35.0%
! GAGATTTGTGTAAAAGCACA+TGG - chr4_4:61350834-61350853 Msa0692710:five_prime_UTR 35.0%
ATGGCCATTGCCTTAAAAAA+GGG - chr4_4:61350853-61350872 Msa0692710:five_prime_UTR 35.0%
AGTAGATTTCTTCTACCATG+CGG + chr4_4:61350887-61350906 None:intergenic 35.0%
AAATATCATCCCATTGCATG+GGG + chr4_4:61350923-61350942 None:intergenic 35.0%
AAAATAAGCTATTGGGCTCG+GGG + chr4_4:61345119-61345138 None:intergenic 40.0%
TCATCAATCTCTTCTTCTCC+CGG - chr4_4:61345193-61345212 Msa0692710:three_prime_UTR 40.0%
TTCTTCTCTTCCTCTTCTTC+TGG - chr4_4:61345286-61345305 Msa0692710:three_prime_UTR 40.0%
TCTTCTCTTCCTCTTCTTCT+GGG - chr4_4:61345287-61345306 Msa0692710:three_prime_UTR 40.0%
ACAACTACAACTACAGCTAC+AGG - chr4_4:61345338-61345357 Msa0692710:exon 40.0%
TCACTGTTACTGTAGTAGTC+AGG - chr4_4:61345428-61345447 Msa0692710:intron 40.0%
AGCAGCAGCATAACATATTG+AGG + chr4_4:61345509-61345528 None:intergenic 40.0%
!! TTGTTTGTTTCTGCAGGAAC+AGG - chr4_4:61345637-61345656 Msa0692710:intron 40.0%
AGGAAGATATTGCTTTGGCA+TGG + chr4_4:61345817-61345836 None:intergenic 40.0%
ACGTACCTATAGAGTGCAAT+GGG + chr4_4:61345852-61345871 None:intergenic 40.0%
TACGTACCTATAGAGTGCAA+TGG + chr4_4:61345853-61345872 None:intergenic 40.0%
!! TTCTTTGACTTGAAGCATGC+GGG + chr4_4:61345964-61345983 None:intergenic 40.0%
TGAAAGATGTCGTTGTAGGA+AGG + chr4_4:61346005-61346024 None:intergenic 40.0%
TCCTACAACGACATCTTTCA+AGG - chr4_4:61346005-61346024 Msa0692710:intron 40.0%
ACCTTGAAAGATGTCGTTGT+AGG + chr4_4:61346009-61346028 None:intergenic 40.0%
AATTTCCTTTGGCATCTGAG+GGG + chr4_4:61346116-61346135 None:intergenic 40.0%
CAATTTCCTTTGGCATCTGA+GGG + chr4_4:61346117-61346136 None:intergenic 40.0%
! GAATCCTGTCTTTCTTTTCC+AGG + chr4_4:61346165-61346184 None:intergenic 40.0%
TTCTGTTTACAATGGCCTTC+AGG - chr4_4:61346182-61346201 Msa0692710:intron 40.0%
AGAAAACAGCACATTCCTGA+AGG + chr4_4:61346200-61346219 None:intergenic 40.0%
GTATGGGCATGTTAACCAAA+TGG + chr4_4:61346375-61346394 None:intergenic 40.0%
GTTTATCCCGTTAACACTCA+TGG - chr4_4:61346855-61346874 Msa0692710:intron 40.0%
TAAGGAGCCATGAGTGTTAA+CGG + chr4_4:61346865-61346884 None:intergenic 40.0%
ACATATCACTGCTTGTAGGT+GGG + chr4_4:61347128-61347147 None:intergenic 40.0%
CTACAAGCAGTGATATGTCA+GGG - chr4_4:61347130-61347149 Msa0692710:intron 40.0%
ACTGAATACCTCCTTGATTG+TGG + chr4_4:61347577-61347596 None:intergenic 40.0%
TCTTCGGCTACCTAAATCTT+AGG + chr4_4:61347868-61347887 None:intergenic 40.0%
GAGGAGAAGATTCCGATATA+TGG - chr4_4:61347900-61347919 Msa0692710:intron 40.0%
!! CCAAAGCTAGACTTTTGAAG+GGG + chr4_4:61348084-61348103 None:intergenic 40.0%
! GACCAAAGCTAGACTTTTGA+AGG + chr4_4:61348086-61348105 None:intergenic 40.0%
!! GAAATGAGGTATCGCCATAT+CGG + chr4_4:61348171-61348190 None:intergenic 40.0%
!!! TCGGTTGGACCGTTTTATTT+TGG - chr4_4:61348380-61348399 Msa0692710:intron 40.0%
CGAAGAAAAAACAGAGCATG+AGG - chr4_4:61348491-61348510 Msa0692710:CDS 40.0%
AGCAGTTACGTAACTGTGAA+TGG + chr4_4:61348827-61348846 None:intergenic 40.0%
ACGTAACTGCTTTACAACTG+TGG - chr4_4:61348836-61348855 Msa0692710:intron 40.0%
!! CTGCAGAAAGATTAGCTTAC+AGG + chr4_4:61349040-61349059 None:intergenic 40.0%
CTGTAAGCTAATCTTTCTGC+AGG - chr4_4:61349038-61349057 Msa0692710:intron 40.0%
ATCATTTGTGGTCAGAACAC+TGG - chr4_4:61349071-61349090 Msa0692710:CDS 40.0%
CACTGGATAGAAAAACGCTA+TGG - chr4_4:61349088-61349107 Msa0692710:CDS 40.0%
GGATAGCTCTTGGTTCATAT+AGG + chr4_4:61349353-61349372 None:intergenic 40.0%
TTACCATGAATGACTCACCT+GGG + chr4_4:61349390-61349409 None:intergenic 40.0%
TTTACCATGAATGACTCACC+TGG + chr4_4:61349391-61349410 None:intergenic 40.0%
!! GTTGCCTTTCTGAAACTAAC+TGG - chr4_4:61349479-61349498 Msa0692710:intron 40.0%
TACAACCTTCTTTGCAGAGA+AGG - chr4_4:61349511-61349530 Msa0692710:intron 40.0%
TACTGACGATGTTTCCATTG+TGG - chr4_4:61349543-61349562 Msa0692710:intron 40.0%
! ATGTTTAAGGTGCTCCACAA+TGG + chr4_4:61349560-61349579 None:intergenic 40.0%
CATCCTGTTTATATCACCGA+AGG - chr4_4:61349577-61349596 Msa0692710:intron 40.0%
GATCCTTCGGTGATATAAAC+AGG + chr4_4:61349583-61349602 None:intergenic 40.0%
TTGGGCTTATGAGAATTGAG+AGG - chr4_4:61349785-61349804 Msa0692710:intron 40.0%
TGGGCTTATGAGAATTGAGA+GGG - chr4_4:61349786-61349805 Msa0692710:intron 40.0%
TATGCTAACAAGTGCCCTTA+GGG + chr4_4:61350181-61350200 None:intergenic 40.0%
TTATGCTAACAAGTGCCCTT+AGG + chr4_4:61350182-61350201 None:intergenic 40.0%
TTTGCCAATCTCACCATTGA+AGG - chr4_4:61350712-61350731 Msa0692710:CDS 40.0%
TTGCCAATCTCACCATTGAA+GGG - chr4_4:61350713-61350732 Msa0692710:CDS 40.0%
TTTCCCTTCAATGGTGAGAT+TGG + chr4_4:61350719-61350738 None:intergenic 40.0%
CATGGCCATTGCCTTAAAAA+AGG - chr4_4:61350852-61350871 Msa0692710:five_prime_UTR 40.0%
AAAAGGGAAATGTTTCCGCA+TGG - chr4_4:61350869-61350888 Msa0692710:five_prime_UTR 40.0%
!! GTTTAGCTCTGTGTGAGAGA+TGG - chr4_4:61345223-61345242 Msa0692710:three_prime_UTR 45.0%
GTTACTGTAGTAGTCAGGTC+AGG - chr4_4:61345433-61345452 Msa0692710:intron 45.0%
! AGTTAGTTTACTTGGGCGGT+GGG + chr4_4:61345544-61345563 None:intergenic 45.0%
! TAGTTAGTTTACTTGGGCGG+TGG + chr4_4:61345545-61345564 None:intergenic 45.0%
ACCTATAGAGTGCAATGGGT+TGG + chr4_4:61345848-61345867 None:intergenic 45.0%
GCAATTTCCTTTGGCATCTG+AGG + chr4_4:61346118-61346137 None:intergenic 45.0%
GTCTGGTTGGCAATTTCCTT+TGG + chr4_4:61346127-61346146 None:intergenic 45.0%
! GTGCAAATTTGAGGTCTGGT+TGG + chr4_4:61346140-61346159 None:intergenic 45.0%
TTCCAGGCAGTGCAAATTTG+AGG + chr4_4:61346149-61346168 None:intergenic 45.0%
ACTGCCTGGAAAAGAAAGAC+AGG - chr4_4:61346158-61346177 Msa0692710:intron 45.0%
CAAACCCGAATCTTGCCATT+TGG - chr4_4:61346357-61346376 Msa0692710:intron 45.0%
! CTTTGGAAAATTGGGGAGCA+CGG - chr4_4:61346543-61346562 Msa0692710:intron 45.0%
AAGGAGCCATGAGTGTTAAC+GGG + chr4_4:61346864-61346883 None:intergenic 45.0%
GACATATCACTGCTTGTAGG+TGG + chr4_4:61347129-61347148 None:intergenic 45.0%
CCTGACATATCACTGCTTGT+AGG + chr4_4:61347132-61347151 None:intergenic 45.0%
CCTACAAGCAGTGATATGTC+AGG - chr4_4:61347129-61347148 Msa0692710:intron 45.0%
TTGGCAATCGCCAAAGACAT+TGG + chr4_4:61347293-61347312 None:intergenic 45.0%
TTGAATGGAGCTGCTGTTCT+TGG - chr4_4:61347537-61347556 Msa0692710:intron 45.0%
TAGGCAGTCCGACCATATAT+CGG + chr4_4:61347915-61347934 None:intergenic 45.0%
! CCTTTCTTTTGCCACCTCAA+TGG + chr4_4:61347974-61347993 None:intergenic 45.0%
CCATTGAGGTGGCAAAAGAA+AGG - chr4_4:61347971-61347990 Msa0692710:intron 45.0%
TGAGGTGGCAAAAGAAAGGT+TGG - chr4_4:61347975-61347994 Msa0692710:intron 45.0%
!! CTAGACTTTTGAAGGGGTGT+TGG + chr4_4:61348078-61348097 None:intergenic 45.0%
! CCCCTTCAAAAGTCTAGCTT+TGG - chr4_4:61348081-61348100 Msa0692710:intron 45.0%
CTGCAAAGAACTGTGATGCA+CGG + chr4_4:61348529-61348548 None:intergenic 45.0%
! TTTTCCTGCCACAGAGACTA+AGG - chr4_4:61348550-61348569 Msa0692710:intron 45.0%
GGCAAACACCGAATCATTTG+TGG - chr4_4:61349059-61349078 Msa0692710:intron 45.0%
CATCTTTGCAGTTTGACCTG+TGG + chr4_4:61349126-61349145 None:intergenic 45.0%
TTATCAAACCCGAGTTGCTG+AGG - chr4_4:61349214-61349233 Msa0692710:intron 45.0%
AAAGCCTTTCCTCAGCAACT+CGG + chr4_4:61349226-61349245 None:intergenic 45.0%
TCCAAACATATTGACCACCC+AGG - chr4_4:61349370-61349389 Msa0692710:intron 45.0%
ACCTGGGTGGTCAATATGTT+TGG + chr4_4:61349374-61349393 None:intergenic 45.0%
CGGAACAATGCTGAGAAGAT+AGG - chr4_4:61349457-61349476 Msa0692710:intron 45.0%
CAAGACCTTCTCTGCAAAGA+AGG + chr4_4:61349519-61349538 None:intergenic 45.0%
TCTCTCTTGGTAGGATGGTT+AGG - chr4_4:61349633-61349652 Msa0692710:intron 45.0%
TTTCTCTGACGTGCTTAGTC+GGG + chr4_4:61349761-61349780 None:intergenic 45.0%
CTTTCTCTGACGTGCTTAGT+CGG + chr4_4:61349762-61349781 None:intergenic 45.0%
!! AGCACGTCAGAGAAAGCATT+TGG - chr4_4:61349766-61349785 Msa0692710:intron 45.0%
!! GCACGTCAGAGAAAGCATTT+GGG - chr4_4:61349767-61349786 Msa0692710:intron 45.0%
!! ATGAGAATTGAGAGGGCGTT+TGG - chr4_4:61349793-61349812 Msa0692710:intron 45.0%
! TGCCCTTAGGGCATTTGTTA+AGG + chr4_4:61350169-61350188 None:intergenic 45.0%
GCTTGGGCGTAACTTATCTT+GGG - chr4_4:61350259-61350278 Msa0692710:intron 45.0%
GACTTGGATAACAGCGATCT+TGG - chr4_4:61350486-61350505 Msa0692710:intron 45.0%
! ACTTTTCAGCTTCATGGGCC+AGG - chr4_4:61345071-61345090 Msa0692710:three_prime_UTR 50.0%
! GCGAGAGGCGGATATGTTTT+GGG + chr4_4:61345097-61345116 None:intergenic 50.0%
AAGGGCAATCCCAGAAGAAG+AGG + chr4_4:61345299-61345318 None:intergenic 50.0%
GTTTCTGCAGGAACAGGAGA+AGG - chr4_4:61345643-61345662 Msa0692710:intron 50.0%
GCCAACCCATTGCACTCTAT+AGG - chr4_4:61345844-61345863 Msa0692710:intron 50.0%
! GGCAGTGCAAATTTGAGGTC+TGG + chr4_4:61346144-61346163 None:intergenic 50.0%
GACCTCAAATTTGCACTGCC+TGG - chr4_4:61346144-61346163 Msa0692710:intron 50.0%
!! TGTTCTTGGTGTCCCTGTGA+AGG - chr4_4:61347551-61347570 Msa0692710:intron 50.0%
CCTTGATTGTGGCCTTCACA+GGG + chr4_4:61347566-61347585 None:intergenic 50.0%
TCCTTGATTGTGGCCTTCAC+AGG + chr4_4:61347567-61347586 None:intergenic 50.0%
TGTGAAGGCCACAATCAAGG+AGG - chr4_4:61347566-61347585 Msa0692710:intron 50.0%
TCGGAATCTTCTCCTCTGCA+TGG + chr4_4:61347896-61347915 None:intergenic 50.0%
TCAATGGCTAGGCACCCATA+GGG + chr4_4:61347958-61347977 None:intergenic 50.0%
! CTTTTGCCACCTCAATGGCT+AGG + chr4_4:61347969-61347988 None:intergenic 50.0%
!! TAGTGCCTAGGCACTGAAGT+CGG - chr4_4:61348030-61348049 Msa0692710:intron 50.0%
GATTCCTTAGTCTCTGTGGC+AGG + chr4_4:61348557-61348576 None:intergenic 50.0%
AAACCCGAGTTGCTGAGGAA+AGG - chr4_4:61349219-61349238 Msa0692710:intron 50.0%
AAGCCTTTCCTCAGCAACTC+GGG + chr4_4:61349225-61349244 None:intergenic 50.0%
CAGGCATCAAAGGGGGAATT+TGG + chr4_4:61350221-61350240 None:intergenic 50.0%
GGCTTGGGCGTAACTTATCT+TGG - chr4_4:61350258-61350277 Msa0692710:intron 50.0%
GGGCGTAACTTATCTTGGGT+TGG - chr4_4:61350263-61350282 Msa0692710:intron 50.0%
GCGTAGTCACCTGCAAAACA+TGG + chr4_4:61350627-61350646 None:intergenic 50.0%
ATTACCAGTGCCCCATGCAA+TGG - chr4_4:61350910-61350929 Msa0692710:five_prime_UTR 50.0%
TTACCAGTGCCCCATGCAAT+GGG - chr4_4:61350911-61350930 Msa0692710:five_prime_UTR 50.0%
!! AGGCGGATATGTTTTGGGCC+TGG + chr4_4:61345092-61345111 None:intergenic 55.0%
! GGCGAGAGGCGGATATGTTT+TGG + chr4_4:61345098-61345117 None:intergenic 55.0%
TTTACTTGGGCGGTGGGAAG+TGG + chr4_4:61345538-61345557 None:intergenic 55.0%
TGGAGGGAAGGGCAAGAGAA+TGG - chr4_4:61345709-61345728 Msa0692710:intron 55.0%
GGAGGGAAGGGCAAGAGAAT+GGG - chr4_4:61345710-61345729 Msa0692710:intron 55.0%
TCCTTTGGCATCTGAGGGGA+GGG + chr4_4:61346112-61346131 None:intergenic 55.0%
TTCCTTTGGCATCTGAGGGG+AGG + chr4_4:61346113-61346132 None:intergenic 55.0%
CCCTGTGAAGGCCACAATCA+AGG - chr4_4:61347563-61347582 Msa0692710:intron 55.0%
TGCACAGCACACTCAACGCA+AGG + chr4_4:61347794-61347813 None:intergenic 55.0%
CCTCTGCATGGTGTGCTCTT+CGG + chr4_4:61347884-61347903 None:intergenic 55.0%
CTCAATGGCTAGGCACCCAT+AGG + chr4_4:61347959-61347978 None:intergenic 55.0%
CTATGGGTGCCTAGCCATTG+AGG - chr4_4:61347957-61347976 Msa0692710:intron 55.0%
ATGGGAGATGCAGACTCCAC+AGG - chr4_4:61349107-61349126 Msa0692710:CDS 55.0%
CCATGAATGACTCACCTGGG+TGG + chr4_4:61349387-61349406 None:intergenic 55.0%
CCACCCAGGTGAGTCATTCA+TGG - chr4_4:61349384-61349403 Msa0692710:intron 55.0%
CGTGCTTAGTCGGGTCAAGT+GGG + chr4_4:61349752-61349771 None:intergenic 55.0%
ACGTGCTTAGTCGGGTCAAG+TGG + chr4_4:61349753-61349772 None:intergenic 55.0%
GTCTCCGTTGTACTGCTCGC+TGG - chr4_4:61345689-61345708 Msa0692710:intron 60.0%
TCCGTTGTACTGCTCGCTGG+AGG - chr4_4:61345692-61345711 Msa0692710:intron 60.0%
CCCTCCAGCGAGCAGTACAA+CGG + chr4_4:61345696-61345715 None:intergenic 60.0%
CCGTTGTACTGCTCGCTGGA+GGG - chr4_4:61345693-61345712 Msa0692710:intron 60.0%
TGTACTGCTCGCTGGAGGGA+AGG - chr4_4:61345697-61345716 Msa0692710:intron 60.0%
GTACTGCTCGCTGGAGGGAA+GGG - chr4_4:61345698-61345717 Msa0692710:intron 60.0%
!! GCAATGGGTTGGCCCAAGAG+AGG + chr4_4:61345837-61345856 None:intergenic 60.0%
CTTTGGCATCTGAGGGGAGG+GGG + chr4_4:61346110-61346129 None:intergenic 60.0%
CCTTTGGCATCTGAGGGGAG+GGG + chr4_4:61346111-61346130 None:intergenic 60.0%
! CCGAAGAGCACACCATGCAG+AGG - chr4_4:61347881-61347900 Msa0692710:intron 60.0%
TGGGTGCCTAGCCATTGAGG+TGG - chr4_4:61347960-61347979 Msa0692710:intron 60.0%
!! CCTCACCGACTTCAGTGCCT+AGG + chr4_4:61348038-61348057 None:intergenic 60.0%
!! CCTAGGCACTGAAGTCGGTG+AGG - chr4_4:61348035-61348054 Msa0692710:intron 60.0%
CATCCCATTGCATGGGGCAC+TGG + chr4_4:61350917-61350936 None:intergenic 60.0%
CCCCTCCCCTCAGATGCCAA+AGG - chr4_4:61346108-61346127 Msa0692710:intron 65.0%
! GGCACTGAAGTCGGTGAGGC+AGG - chr4_4:61348039-61348058 Msa0692710:intron 65.0%
ATTGGGCTCGGGGCGAGAGG+CGG + chr4_4:61345109-61345128 None:intergenic 70.0%
GCTATTGGGCTCGGGGCGAG+AGG + chr4_4:61345112-61345131 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61345042 61351007 61345042 ID=Msa0692710;Name=Msa0692710
chr4_4 mRNA 61345042 61351007 61345042 ID=Msa0692710-mRNA-1;Parent=Msa0692710;Name=Msa0692710-mRNA-1;_AED=0.22;_eAED=0.22;_QI=200|0.90|0.91|1|1|1|12|302|319
chr4_4 exon 61345042 61345412 61345042 ID=Msa0692710-mRNA-1:exon:16938;Parent=Msa0692710-mRNA-1
chr4_4 exon 61346431 61346521 61346431 ID=Msa0692710-mRNA-1:exon:16937;Parent=Msa0692710-mRNA-1
chr4_4 exon 61346790 61346836 61346790 ID=Msa0692710-mRNA-1:exon:16936;Parent=Msa0692710-mRNA-1
chr4_4 exon 61346921 61346989 61346921 ID=Msa0692710-mRNA-1:exon:16935;Parent=Msa0692710-mRNA-1
chr4_4 exon 61348462 61348530 61348462 ID=Msa0692710-mRNA-1:exon:16934;Parent=Msa0692710-mRNA-1
chr4_4 exon 61349060 61349137 61349060 ID=Msa0692710-mRNA-1:exon:16933;Parent=Msa0692710-mRNA-1
chr4_4 exon 61349837 61349928 61349837 ID=Msa0692710-mRNA-1:exon:16932;Parent=Msa0692710-mRNA-1
chr4_4 exon 61350023 61350102 61350023 ID=Msa0692710-mRNA-1:exon:16931;Parent=Msa0692710-mRNA-1
chr4_4 exon 61350184 61350239 61350184 ID=Msa0692710-mRNA-1:exon:16930;Parent=Msa0692710-mRNA-1
chr4_4 exon 61350316 61350396 61350316 ID=Msa0692710-mRNA-1:exon:16929;Parent=Msa0692710-mRNA-1
chr4_4 exon 61350497 61350606 61350497 ID=Msa0692710-mRNA-1:exon:16928;Parent=Msa0692710-mRNA-1
chr4_4 exon 61350690 61351007 61350690 ID=Msa0692710-mRNA-1:exon:16927;Parent=Msa0692710-mRNA-1
chr4_4 five_prime_UTR 61350808 61351007 61350808 ID=Msa0692710-mRNA-1:five_prime_utr;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61350690 61350807 61350690 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61350497 61350606 61350497 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61350316 61350396 61350316 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61350184 61350239 61350184 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61350023 61350102 61350023 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61349837 61349928 61349837 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61349060 61349137 61349060 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61348462 61348530 61348462 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61346921 61346989 61346921 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61346790 61346836 61346790 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61346431 61346521 61346431 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 CDS 61345344 61345412 61345344 ID=Msa0692710-mRNA-1:cds;Parent=Msa0692710-mRNA-1
chr4_4 three_prime_UTR 61345042 61345343 61345042 ID=Msa0692710-mRNA-1:three_prime_utr;Parent=Msa0692710-mRNA-1
Gene Sequence

>Msa0692710

ATGGAATTTGTGATTAAGTTTCAGCATTGTTCTTCTTGTTCTTCTTCTTCTCTTCCTCTTCTTCTGGGATTGCCCTTCCCAACAATCAAATCTCTTACAACTACAACTACAGCTACAGTAGTCAGGTCAGGTCCTCAAATATCTATAAACAACAACAACAAAAATGTTTTATTATCATCAACCTCAATATGTTATGCTGCTGCTGCTGCTCCACTTCCCACCGCCCAAGAACAGGAGAAGGATGTTGTCGTTAAAGACAGAAGCGTCTCCGTTGTACTGCTCGCTGGAGGGAAGGGCAAGAGAATGGGAGCTACCATGCCAAAGCAATATCTTCCTCTCTTGGGCCAACCCATTGCACTCTATAGTTTCTACACTTTCTCCCGCATGCTTCAAGTCAAAGAAATCATTGTCGTTTGCGATCCTTCCTACAACGACATCTTTCAAGATGCCAAAGGAAATTGCCAACCAGACCTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGTTTACAATGGCCTTCAGGAATGTGCTGCTGTTGATTCAAACTCTGAGCTTGTTTGTGTTCATGATTCTGCAAGACCTTTAGTGTTACAAGAAGATGTGAAAAAGGTCCTTAAAGATGGATTGTTGAATGGAGCTGCTGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAGGAGGCAAACACCGAATCATTTGTGGTCAGAACACTGGATAGAAAAACGCTATGGGAGATGCAGACTCCACAGATTATCAAACCCGAGTTGCTGAGGAAAGGCTTTGAGCTTGTAAATAGAGAAGGTCTTGAAGTTACTGACGATGTTTCCATTGTGGAGCACCTTAAACATCCTGTTTATATCACCGAAGGATCTTATACCAACATCAAGGTGACTACGCCTGATGATTTATTACTAGCAGAGAGAATATTGAATATAAATTCTGGGGAAAGTTCTTAA

Protein sequence

>Msa0692710

MEFVIKFQHCSSCSSSSLPLLLGLPFPTIKSLTTTTTATVVRSGPQISINNNNKNVLLSSTSICYAAAAAPLPTAQEQEKDVVVKDRSVSVVLLAGGKGKRMGATMPKQYLPLLGQPIALYSFYTFSRMLQVKEIIVVCDPSYNDIFQDAKGNCQPDLKFALPGKERQDSVYNGLQECAAVDSNSELVCVHDSARPLVLQEDVKKVLKDGLLNGAAVLGVPVKATIKEANTESFVVRTLDRKTLWEMQTPQIIKPELLRKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNINSGESS*