AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142340 MtrunA17_Chr4g0076791 90.741 324 10 6 1 319 1 309 0.0 574
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142340 AT2G02500.1 75.893 224 51 1 92 315 82 302 3.05e-124 358
Msa0142340 AT2G02500.2 75.893 224 51 1 92 315 82 302 3.05e-124 358

Find 110 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTTCCTCTTCTTC+TGG 0.093616 1_4:+1235207 Msa0142340:CDS
CATTCAACAATCCATCTTTA+AGG 0.143755 1_4:-1237425 None:intergenic
GGCGAGAGGCGGATATGTTT+TGG 0.207225 1_4:-1235025 None:intergenic
CTTCTCCCGGTTAGTTTGTT+TGG 0.271428 1_4:+1235127 Msa0142340:five_prime_UTR
TTGAATGGAGCTGCTGTTCT+TGG 0.281782 1_4:+1237441 Msa0142340:CDS
GGATGATATTTAATCAAGTT+TGG 0.290779 1_4:+1240836 Msa0142340:three_prime_UTR
GTTACAAGAAGATGTGAAAA+AGG 0.291390 1_4:+1236878 Msa0142340:CDS
TCTTCTCTTCCTCTTCTTCT+GGG 0.292050 1_4:+1235208 Msa0142340:CDS
AATAAAATAAAATAAGCTAT+TGG 0.297394 1_4:-1235054 None:intergenic
TGATATAAACAGGATGTTTA+AGG 0.309094 1_4:-1239474 None:intergenic
AGAATATTGAATATAAATTC+TGG 0.325941 1_4:+1240574 Msa0142340:CDS
TTCTGTTTACAATGGCCTTC+AGG 0.333766 1_4:+1236083 Msa0142340:CDS
GTCTGGTTGGCAATTTCCTT+TGG 0.336442 1_4:-1236025 None:intergenic
AAGGCTTTGAGCTTGTAAAT+AGG 0.349441 1_4:+1239142 Msa0142340:CDS
ATAAAATAAAATAAGCTATT+GGG 0.365478 1_4:-1235053 None:intergenic
TCCTTGATTGTGGCCTTCAC+AGG 0.375394 1_4:-1237468 None:intergenic
TTTCCCTTCAATGGTGAGAT+TGG 0.375566 1_4:-1240620 None:intergenic
TCCTACAACGACATCTTTCA+AGG 0.389033 1_4:+1235920 Msa0142340:CDS
TTTACTTGGGCGGTGGGAAG+TGG 0.392564 1_4:-1235456 None:intergenic
AAAGCAATATCTTCCTCTCT+TGG 0.394637 1_4:+1235738 Msa0142340:CDS
GTTGTAAGAGATTTGATTGT+TGG 0.413235 1_4:-1235241 None:intergenic
GGCAGTGCAAATTTGAGGTC+TGG 0.415366 1_4:-1236042 None:intergenic
ACAGAGCCAAACAAACTAAC+CGG 0.415473 1_4:-1235133 None:intergenic
ATAAAATAAGCTATTGGGCT+CGG 0.418467 1_4:-1235048 None:intergenic
GATCCTTCGGTGATATAAAC+AGG 0.418697 1_4:-1239484 None:intergenic
GACCTCAAATTTGCACTGCC+TGG 0.426209 1_4:+1236045 Msa0142340:CDS
TAAAATAAGCTATTGGGCTC+GGG 0.427686 1_4:-1235047 None:intergenic
TTCCAGGCAGTGCAAATTTG+AGG 0.431618 1_4:-1236047 None:intergenic
TGACAATGATTTCCCTTCAA+TGG 0.442828 1_4:-1240629 None:intergenic
CTTAAAGATGGATTGTTGAA+TGG 0.444390 1_4:+1237426 Msa0142340:CDS
TGGAGGGAAGGGCAAGAGAA+TGG 0.444644 1_4:+1235626 Msa0142340:CDS
CATCCCATTGCATGGGGCAC+TGG 0.449643 1_4:-1240818 None:intergenic
ACATCTTCTTGTAACACTAA+AGG 0.457853 1_4:-1236870 None:intergenic
GAATATTGAATATAAATTCT+GGG 0.460313 1_4:+1240575 Msa0142340:CDS
TTTGCCAATCTCACCATTGA+AGG 0.469458 1_4:+1240616 Msa0142340:three_prime_UTR
TGTACTGCTCGCTGGAGGGA+AGG 0.473433 1_4:+1235614 Msa0142340:CDS
CCCTGTGAAGGCCACAATCA+AGG 0.478877 1_4:+1237467 Msa0142340:CDS
GATGTTGGTATAAGATCCTT+CGG 0.478970 1_4:-1239497 None:intergenic
TTCTTTGACTTGAAGCATGC+GGG 0.479021 1_4:-1235876 None:intergenic
GGAGGGAAGGGCAAGAGAAT+GGG 0.479045 1_4:+1235627 Msa0142340:CDS
AAGTTTGGCAAACATGATAA+AGG 0.480202 1_4:+1240851 Msa0142340:three_prime_UTR
AAGCAATATCTTCCTCTCTT+GGG 0.480844 1_4:+1235739 Msa0142340:CDS
TTGTAAGAGATTTGATTGTT+GGG 0.483226 1_4:-1235240 None:intergenic
TCTGCTAGTAATAAATCATC+AGG 0.483357 1_4:-1240550 None:intergenic
TTACCAGTGCCCCATGCAAT+GGG 0.484640 1_4:+1240815 Msa0142340:three_prime_UTR
AAGAGAGGAAGATATTGCTT+TGG 0.484756 1_4:-1235736 None:intergenic
TCATCAATCTCTTCTTCTCC+CGG 0.494849 1_4:+1235114 Msa0142340:five_prime_UTR
TTGTTGTTTATAGATATTTG+AGG 0.495140 1_4:-1235378 None:intergenic
ATTACCAGTGCCCCATGCAA+TGG 0.495295 1_4:+1240814 Msa0142340:three_prime_UTR
AAGCCTTTCCTCAGCAACTC+GGG 0.500793 1_4:-1239126 None:intergenic
ACAACTACAACTACAGCTAC+AGG 0.503881 1_4:+1235259 Msa0142340:CDS
GTTTGGCTCTGTGTGAGAGA+TGG 0.517712 1_4:+1235144 Msa0142340:exon
ACCTTGAAAGATGTCGTTGT+AGG 0.518450 1_4:-1235921 None:intergenic
TCCGTTGTACTGCTCGCTGG+AGG 0.520002 1_4:+1235609 Msa0142340:CDS
GCTATTGGGCTCGGGGCGAG+AGG 0.520382 1_4:-1235039 None:intergenic
TGTTCTTGGTGTCCCTGTGA+AGG 0.523023 1_4:+1237455 Msa0142340:CDS
TTAAATATCATCCCATTGCA+TGG 0.524143 1_4:-1240826 None:intergenic
GGCAAACACCGAATCATTTG+TGG 0.525156 1_4:+1238963 Msa0142340:intron
ACGTACCTATAGAGTGCAAT+GGG 0.526287 1_4:-1235766 None:intergenic
AAGAGATTTGATTGTTGGGA+AGG 0.526441 1_4:-1235236 None:intergenic
GTTTCTGCAGGAACAGGAGA+AGG 0.526926 1_4:+1235560 Msa0142340:intron
TGTTCTGACCACAAATGATT+CGG 0.528120 1_4:-1238971 None:intergenic
GTCTCCGTTGTACTGCTCGC+TGG 0.529677 1_4:+1235606 Msa0142340:CDS
TAGTTAGTTTACTTGGGCGG+TGG 0.529919 1_4:-1235463 None:intergenic
AAAGCCTTTCCTCAGCAACT+CGG 0.529936 1_4:-1239127 None:intergenic
GCCAACCCATTGCACTCTAT+AGG 0.532866 1_4:+1235761 Msa0142340:CDS
ATCATTTGTGGTCAGAACAC+TGG 0.533413 1_4:+1238975 Msa0142340:CDS
GTACTGCTCGCTGGAGGGAA+GGG 0.538751 1_4:+1235615 Msa0142340:CDS
TAAATATCATCCCATTGCAT+GGG 0.545245 1_4:-1240825 None:intergenic
TCACTGTTACTGTAGTAGTC+AGG 0.546506 1_4:+1235349 Msa0142340:intron
AGAGATTTGATTGTTGGGAA+GGG 0.547132 1_4:-1235235 None:intergenic
ATTGGGCTCGGGGCGAGAGG+CGG 0.547153 1_4:-1235036 None:intergenic
AAGGGCAATCCCAGAAGAAG+AGG 0.559832 1_4:-1235217 None:intergenic
GTGCAAATTTGAGGTCTGGT+TGG 0.560440 1_4:-1236038 None:intergenic
AAGAAGAAGAAGGAGAGAGA+AGG 0.560634 1_4:-1234970 Msa0142330:five_prime_UTR
TTGCCAATCTCACCATTGAA+GGG 0.564403 1_4:+1240617 Msa0142340:three_prime_UTR
TACTGACGATGTTTCCATTG+TGG 0.566054 1_4:+1239447 Msa0142340:CDS
CCTTGATTGTGGCCTTCACA+GGG 0.566587 1_4:-1237467 None:intergenic
ATAGTTGACTACCTTGATGT+TGG 0.566657 1_4:-1239512 None:intergenic
ATTATTTATTCAGATGCCAA+AGG 0.568979 1_4:+1236009 Msa0142340:intron
GTTACTGTAGTAGTCAGGTC+AGG 0.572380 1_4:+1235354 Msa0142340:intron
ACTGAATACCTCCTTGATTG+TGG 0.574579 1_4:-1237478 None:intergenic
AGCAGCAGCATAACATATTG+AGG 0.575565 1_4:-1235427 None:intergenic
CAGAGCCAAACAAACTAACC+GGG 0.575806 1_4:-1235132 None:intergenic
ACCTATAGAGTGCAATGGGT+TGG 0.578481 1_4:-1235762 None:intergenic
AGTTAGTTTACTTGGGCGGT+GGG 0.578835 1_4:-1235462 None:intergenic
ACTGCCTGGAAAAGAAAGAC+AGG 0.579109 1_4:+1236059 Msa0142340:CDS
CCGTTGTACTGCTCGCTGGA+GGG 0.579349 1_4:+1235610 Msa0142340:CDS
ATGGGAGATGCAGACTCCAC+AGG 0.579587 1_4:+1239011 Msa0142340:CDS
TACGTACCTATAGAGTGCAA+TGG 0.580532 1_4:-1235767 None:intergenic
AGGAAGATATTGCTTTGGCA+TGG 0.591255 1_4:-1235731 None:intergenic
TGAAAGATGTCGTTGTAGGA+AGG 0.591296 1_4:-1235917 None:intergenic
AATATTGAATATAAATTCTG+GGG 0.599667 1_4:+1240576 Msa0142340:CDS
AAAATAAGCTATTGGGCTCG+GGG 0.599737 1_4:-1235046 None:intergenic
AGAAAACAGCACATTCCTGA+AGG 0.603136 1_4:-1236098 None:intergenic
ATGTTTAAGGTGCTCCACAA+TGG 0.606587 1_4:-1239461 None:intergenic
AAAAGGGAAATGTTTCCGCA+TGG 0.608233 1_4:+1240773 Msa0142340:three_prime_UTR
CCCTCCAGCGAGCAGTACAA+CGG 0.611991 1_4:-1235610 None:intergenic
AGGATCTTATACCAACATCA+AGG 0.612493 1_4:+1239501 Msa0142340:CDS
GCAATGGGTTGGCCCAAGAG+AGG 0.612871 1_4:-1235751 None:intergenic
TTTCTTTGACTTGAAGCATG+CGG 0.613225 1_4:-1235877 None:intergenic
AAACCCGAGTTGCTGAGGAA+AGG 0.625305 1_4:+1239123 Msa0142340:CDS
CATCCTGTTTATATCACCGA+AGG 0.627709 1_4:+1239481 Msa0142340:CDS
AGACAGGATTCTGTTTACAA+TGG 0.632163 1_4:+1236075 Msa0142340:CDS
TTATCAAACCCGAGTTGCTG+AGG 0.632450 1_4:+1239118 Msa0142340:CDS
GAGATTTGTGTAAAAGCACA+TGG 0.633575 1_4:+1240738 Msa0142340:three_prime_UTR
AGTTAGTTAGTTTACTTGGG+CGG 0.642157 1_4:-1235466 None:intergenic
AAATATCATCCCATTGCATG+GGG 0.663493 1_4:-1240824 None:intergenic
AGTAGATTTCTTCTACCATG+CGG 0.673412 1_4:-1240788 None:intergenic
TGTGAAGGCCACAATCAAGG+AGG 0.756192 1_4:+1237470 Msa0142340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAAATAAGCTATT+GGG - chr1_4:1235056-1235075 None:intergenic 10.0%
!! AATAAAATAAAATAAGCTAT+TGG - chr1_4:1235057-1235076 None:intergenic 10.0%
!! AATTTCTTCTTATTATAAAT+AGG + chr1_4:1235705-1235724 Msa0142340:intron 10.0%
!! ATGCATTTAATAATAATATA+AGG - chr1_4:1236793-1236812 None:intergenic 10.0%
!! ATTTCTTATAAAGTAAATAT+AGG + chr1_4:1238090-1238109 Msa0142340:intron 10.0%
!!! ATGTATATTTCATTTAATTT+TGG + chr1_4:1239053-1239072 Msa0142340:intron 10.0%
!! ATTTAAAAAATTAATTGACT+TGG + chr1_4:1240374-1240393 Msa0142340:intron 10.0%
!!! AAATTTATATATTTTGTATC+AGG - chr1_4:1240504-1240523 None:intergenic 10.0%
!! GATTGATTAATGTTATAAAA+AGG - chr1_4:1235685-1235704 None:intergenic 15.0%
!! TAAGTTAAATTGTAAAGAAA+TGG - chr1_4:1235824-1235843 None:intergenic 15.0%
!! ATAGATTTAGATATCAAAAT+TGG + chr1_4:1236420-1236439 Msa0142340:intron 15.0%
!! TAGATTTAGATATCAAAATT+GGG + chr1_4:1236421-1236440 Msa0142340:intron 15.0%
!! TTAGAAATTTATTGAAAATG+CGG - chr1_4:1236578-1236597 None:intergenic 15.0%
!! AGTTTGCATAAATAAAAATT+GGG + chr1_4:1236699-1236718 Msa0142340:intron 15.0%
!!! TTATTAAATGCATTTTTTAC+AGG + chr1_4:1236800-1236819 Msa0142340:intron 15.0%
!! TAAAATTCAGAAAAATTAAG+CGG - chr1_4:1236946-1236965 None:intergenic 15.0%
!! TATAGATAAGTAATATAAGT+AGG - chr1_4:1237391-1237410 None:intergenic 15.0%
!! AAAAATAAAACAAACAAAAG+AGG + chr1_4:1237578-1237597 Msa0142340:intron 15.0%
!! TATTTACTTTATAAGAAATG+AGG - chr1_4:1238089-1238108 None:intergenic 15.0%
!! TTAAAGAAATGAAAAATAGA+AGG + chr1_4:1238235-1238254 Msa0142340:intron 15.0%
!! AAACATTATACAAAAAATAG+AGG + chr1_4:1238365-1238384 Msa0142340:intron 15.0%
!! AGTATTTCTTCAATAAAAAA+AGG - chr1_4:1239833-1239852 None:intergenic 15.0%
!! AATTTGGATAAATAACTAAA+GGG - chr1_4:1240109-1240128 None:intergenic 15.0%
!! ATAATTCTATCTAATCTAAT+GGG - chr1_4:1240194-1240213 None:intergenic 15.0%
!! TTAAATAGTATACATGATTT+AGG - chr1_4:1240323-1240342 None:intergenic 15.0%
!! AGAATATTGAATATAAATTC+TGG + chr1_4:1240574-1240593 Msa0142340:CDS 15.0%
!! GAATATTGAATATAAATTCT+GGG + chr1_4:1240575-1240594 Msa0142340:CDS 15.0%
!! AATATTGAATATAAATTCTG+GGG + chr1_4:1240576-1240595 Msa0142340:CDS 15.0%
!!! TTGTTGTTTATAGATATTTG+AGG - chr1_4:1235381-1235400 None:intergenic 20.0%
!! AATAATATTAATAGGCAAGA+GGG - chr1_4:1235992-1236011 None:intergenic 20.0%
!! TAATAATATTAATAGGCAAG+AGG - chr1_4:1235993-1236012 None:intergenic 20.0%
!! TATAAAATTGAGCTAAAGAA+AGG - chr1_4:1236171-1236190 None:intergenic 20.0%
!!! GCTCAATTTTATATTAATTC+AGG + chr1_4:1236178-1236197 Msa0142340:intron 20.0%
!! TATGTCTGATAAAAATGTAT+GGG - chr1_4:1236292-1236311 None:intergenic 20.0%
!! ATATGTCTGATAAAAATGTA+TGG - chr1_4:1236293-1236312 None:intergenic 20.0%
!!! CATTTTTATCAGACATATTT+TGG + chr1_4:1236295-1236314 Msa0142340:intron 20.0%
!! AGATTTAGATATCAAAATTG+GGG + chr1_4:1236422-1236441 Msa0142340:intron 20.0%
!! CAATTTATTAACTATGTGTT+TGG - chr1_4:1236542-1236561 None:intergenic 20.0%
!! CAAACACATAGTTAATAAAT+TGG + chr1_4:1236540-1236559 Msa0142340:intron 20.0%
!! TAGAAATTTATTGAAAATGC+GGG - chr1_4:1236577-1236596 None:intergenic 20.0%
!! AACAGTTAATTAATCTTACA+TGG - chr1_4:1236643-1236662 None:intergenic 20.0%
!! GAGTTTGCATAAATAAAAAT+TGG + chr1_4:1236698-1236717 Msa0142340:intron 20.0%
!! TACATTTATGTTATTGTCAA+TGG + chr1_4:1237075-1237094 Msa0142340:intron 20.0%
!!! CTTATCTATATTCTGTTTTA+AGG + chr1_4:1237401-1237420 Msa0142340:intron 20.0%
!! ATAACTATTAACTAATGTCT+AGG - chr1_4:1237838-1237857 None:intergenic 20.0%
!! CTCAATATTCCAAAATAAAA+CGG - chr1_4:1238296-1238315 None:intergenic 20.0%
!!! TTTTATTTTGGAATATTGAG+TGG + chr1_4:1238296-1238315 Msa0142340:intron 20.0%
!!! TTTATTTTGGAATATTGAGT+GGG + chr1_4:1238297-1238316 Msa0142340:intron 20.0%
!!! TAATTTGCAAGGAAAATAAT+GGG - chr1_4:1238571-1238590 None:intergenic 20.0%
!!! TATTTTTGTTTGTTCATACT+TGG + chr1_4:1238784-1238803 Msa0142340:intron 20.0%
!! TTCATAAATAACTGAAGAAT+AGG - chr1_4:1239207-1239226 None:intergenic 20.0%
!!! TAAAGCTTTGTAAGTAATAA+AGG - chr1_4:1239563-1239582 None:intergenic 20.0%
!!! TGTTCATATTAGTTGTTTTT+AGG + chr1_4:1239789-1239808 Msa0142340:intron 20.0%
!! TACTTATTATATGAGAAGTT+AGG - chr1_4:1239876-1239895 None:intergenic 20.0%
!!! ATTTGTTAAGGAATCAAAAA+AGG - chr1_4:1240061-1240080 None:intergenic 20.0%
!! GAATTTGGATAAATAACTAA+AGG - chr1_4:1240110-1240129 None:intergenic 20.0%
!! CATAATTCTATCTAATCTAA+TGG - chr1_4:1240195-1240214 None:intergenic 20.0%
!! CATTAGATTAGATAGAATTA+TGG + chr1_4:1240193-1240212 Msa0142340:intron 20.0%
!! GGATAGTTAATATGTTAAAA+AGG - chr1_4:1240277-1240296 None:intergenic 20.0%
!!! TTCTTTTTGACAAATGATTT+AGG - chr1_4:1240298-1240317 None:intergenic 20.0%
!!! TTTTCACTTTTCAGCTTTTT+TGG + chr1_4:1234995-1235014 Msa0142340:five_prime_UTR 25.0%
!!! TTTCACTTTTCAGCTTTTTT+GGG + chr1_4:1234996-1235015 Msa0142340:five_prime_UTR 25.0%
! TTGTAAGAGATTTGATTGTT+GGG - chr1_4:1235243-1235262 None:intergenic 25.0%
! TTGAATTGAATCGAATTGAA+TGG - chr1_4:1235501-1235520 None:intergenic 25.0%
! AATTCAATTACTCTACTATG+AGG + chr1_4:1235514-1235533 Msa0142340:intron 25.0%
! ATTATTTATTCAGATGCCAA+AGG + chr1_4:1236009-1236028 Msa0142340:intron 25.0%
! AGACATTTCTATATTTACTG+TGG - chr1_4:1236327-1236346 None:intergenic 25.0%
! CAGTAAATATAGAAATGTCT+AGG + chr1_4:1236327-1236346 Msa0142340:intron 25.0%
!! TTCAGTGTTGAAACATTATT+AGG + chr1_4:1236489-1236508 Msa0142340:intron 25.0%
! TAGTTAATAAATTGGCATTC+TGG + chr1_4:1236548-1236567 Msa0142340:intron 25.0%
! AAGATTAATTAACTGTTGTC+AGG + chr1_4:1236646-1236665 Msa0142340:intron 25.0%
! AGATTAATTAACTGTTGTCA+GGG + chr1_4:1236647-1236666 Msa0142340:intron 25.0%
! GTTATTGTCAATGGTTTATA+TGG + chr1_4:1237084-1237103 Msa0142340:intron 25.0%
!! ATGTGTCTGTACATTTTTAA+TGG + chr1_4:1237270-1237289 Msa0142340:intron 25.0%
!! AATGCACATTTGACATATTT+TGG + chr1_4:1237298-1237317 Msa0142340:intron 25.0%
!!! ACATTTGACATATTTTGGAT+AGG + chr1_4:1237303-1237322 Msa0142340:intron 25.0%
!!! CATTTGACATATTTTGGATA+GGG + chr1_4:1237304-1237323 Msa0142340:intron 25.0%
! GATAAGTAATATAAGTAGGT+AGG - chr1_4:1237387-1237406 None:intergenic 25.0%
! TTTCTTACGATTATTGTAAG+TGG + chr1_4:1237518-1237537 Msa0142340:intron 25.0%
!!! CTTAACCATTTTCAAGAAAA+AGG + chr1_4:1237610-1237629 Msa0142340:intron 25.0%
!!! TTGAAGGATTTTATTTTCAC+TGG - chr1_4:1237644-1237663 None:intergenic 25.0%
! ATATAGGATACGATACATTT+AGG + chr1_4:1238106-1238125 Msa0142340:intron 25.0%
! ACTTAAGAAAAAGAAGACAT+CGG + chr1_4:1238265-1238284 Msa0142340:intron 25.0%
!! CTAATTTGCAAGGAAAATAA+TGG - chr1_4:1238572-1238591 None:intergenic 25.0%
!!! ATTAATTGTGCAAAAGTACT+TGG - chr1_4:1238644-1238663 None:intergenic 25.0%
! TGAAATTATCAATTTGAGCT+TGG + chr1_4:1238865-1238884 Msa0142340:intron 25.0%
! GAAATTATCAATTTGAGCTT+GGG + chr1_4:1238866-1238885 Msa0142340:intron 25.0%
!!! ATTATTTTCAAGTCCATCAA+GGG - chr1_4:1238917-1238936 None:intergenic 25.0%
!!! AAACTTGTTACTACATATTC+TGG - chr1_4:1239319-1239338 None:intergenic 25.0%
!! GTAACAAGTTTAGAGAATTT+TGG + chr1_4:1239328-1239347 Msa0142340:intron 25.0%
!!! AGAATTTTGGTTTCATCATT+CGG + chr1_4:1239341-1239360 Msa0142340:intron 25.0%
! TGATATAAACAGGATGTTTA+AGG - chr1_4:1239477-1239496 None:intergenic 25.0%
! AACCTGTAACTTATATCATT+TGG + chr1_4:1239584-1239603 Msa0142340:intron 25.0%
! TACCAAATGATATAAGTTAC+AGG - chr1_4:1239589-1239608 None:intergenic 25.0%
! AGTTCTTTCAAACATTGATA+CGG - chr1_4:1239749-1239768 None:intergenic 25.0%
! TGTAAAAAACATAACTTCAG+TGG - chr1_4:1240454-1240473 None:intergenic 25.0%
!!! ATTGATTTTTGAACTGCAAA+AGG + chr1_4:1240674-1240693 Msa0142340:three_prime_UTR 25.0%
! GGATGATATTTAATCAAGTT+TGG + chr1_4:1240836-1240855 Msa0142340:three_prime_UTR 25.0%
AGTGAAAAAGAAGAAGAAGA+AGG - chr1_4:1234983-1235002 Msa0142330:five_prime_UTR 30.0%
ATAAAATAAGCTATTGGGCT+CGG - chr1_4:1235051-1235070 None:intergenic 30.0%
GTTGTAAGAGATTTGATTGT+TGG - chr1_4:1235244-1235263 None:intergenic 30.0%
! AGGAGTTAGTTAGTTTACTT+GGG - chr1_4:1235472-1235491 None:intergenic 30.0%
TGAATCGAATTGAATGGAAA+AGG - chr1_4:1235495-1235514 None:intergenic 30.0%
!! ATTTGTTTGTTTGTTTCTGC+AGG + chr1_4:1235548-1235567 Msa0142340:intron 30.0%
AAAGACATGACATAGTGTTA+TGG - chr1_4:1235969-1235988 None:intergenic 30.0%
!!! CTAATGATCATTGTTTTGGA+AGG - chr1_4:1236228-1236247 None:intergenic 30.0%
! TCAGCTAATGATCATTGTTT+TGG - chr1_4:1236232-1236251 None:intergenic 30.0%
GCTAGATATCATAGAGTTAA+TGG - chr1_4:1236469-1236488 None:intergenic 30.0%
TTGAAACATTATTAGGACAC+AGG + chr1_4:1236496-1236515 Msa0142340:intron 30.0%
AAACAGACTGTTCAAAATGT+TGG + chr1_4:1236614-1236633 Msa0142340:intron 30.0%
ACATCTTCTTGTAACACTAA+AGG - chr1_4:1236873-1236892 None:intergenic 30.0%
GTTACAAGAAGATGTGAAAA+AGG + chr1_4:1236878-1236897 Msa0142340:CDS 30.0%
AGAAGATGTGAAAAAGGTTT+CGG + chr1_4:1236884-1236903 Msa0142340:intron 30.0%
!! TTAGTTTAGTGAGAGTGTTA+TGG + chr1_4:1237005-1237024 Msa0142340:intron 30.0%
! AAGAGTCTAAAATCATGTTG+AGG + chr1_4:1237158-1237177 Msa0142340:intron 30.0%
! TTTTATCAAGACTCTGTCAT+TGG - chr1_4:1237222-1237241 None:intergenic 30.0%
!! ATAAAAGTGCTCGTGTTATT+TGG + chr1_4:1237236-1237255 Msa0142340:intron 30.0%
!!! TGTTTTAAGGTCCTTAAAGA+TGG + chr1_4:1237414-1237433 Msa0142340:intron 30.0%
CATTCAACAATCCATCTTTA+AGG - chr1_4:1237428-1237447 None:intergenic 30.0%
!! CTTAAAGATGGATTGTTGAA+TGG + chr1_4:1237426-1237445 Msa0142340:CDS 30.0%
! CATCACCTTTTTCTTGAAAA+TGG - chr1_4:1237618-1237637 None:intergenic 30.0%
! ATGGTAATCAGAGTTTTTGA+AGG - chr1_4:1237660-1237679 None:intergenic 30.0%
!!! GTTTTCTGCCTTTTTTTAGA+GGG - chr1_4:1237725-1237744 None:intergenic 30.0%
!!! AGTTTTCTGCCTTTTTTTAG+AGG - chr1_4:1237726-1237745 None:intergenic 30.0%
CTAAATGACACCTAAGATTT+AGG + chr1_4:1237759-1237778 Msa0142340:intron 30.0%
TAGTTAATAGTTATGCCCTA+TGG + chr1_4:1237844-1237863 Msa0142340:intron 30.0%
AGTTAATAGTTATGCCCTAT+GGG + chr1_4:1237845-1237864 Msa0142340:intron 30.0%
! GCATTTAAAATTTAGTGCCT+AGG + chr1_4:1237922-1237941 Msa0142340:intron 30.0%
GATTCAATACATATCCGATA+TGG + chr1_4:1238058-1238077 Msa0142340:intron 30.0%
TCATTTGCATGTTTATTCTC+TGG - chr1_4:1238201-1238220 None:intergenic 30.0%
ATCGTATTCACTAGTATTGT+GGG - chr1_4:1238528-1238547 None:intergenic 30.0%
AATCGTATTCACTAGTATTG+TGG - chr1_4:1238529-1238548 None:intergenic 30.0%
ATCACCAATTTCTGTAAACT+TGG - chr1_4:1238606-1238625 None:intergenic 30.0%
!!! CATTATTTTCAAGTCCATCA+AGG - chr1_4:1238918-1238937 None:intergenic 30.0%
! TATACCAGTTAGTTTCAGAA+AGG - chr1_4:1239390-1239409 None:intergenic 30.0%
TAGTCAACTATATTCTCTCT+TGG + chr1_4:1239524-1239543 Msa0142340:intron 30.0%
!! TGAACTTAACTTGTGACATA+AGG + chr1_4:1239722-1239741 Msa0142340:intron 30.0%
ATAAGCTCGCAATTAAGTTA+TGG + chr1_4:1239904-1239923 Msa0142340:intron 30.0%
TAAGCTCGCAATTAAGTTAT+GGG + chr1_4:1239905-1239924 Msa0142340:intron 30.0%
!! AAAATTTTCAGGCATCAAAG+GGG - chr1_4:1240133-1240152 None:intergenic 30.0%
!! CAAAATTTTCAGGCATCAAA+GGG - chr1_4:1240134-1240153 None:intergenic 30.0%
! CCTGAAAATTTTGCACTTTT+GGG + chr1_4:1240141-1240160 Msa0142340:intron 30.0%
TCTGCTAGTAATAAATCATC+AGG - chr1_4:1240553-1240572 None:intergenic 30.0%
!!! ATTTCCCTTTTTTAAGGCAA+TGG - chr1_4:1240764-1240783 None:intergenic 30.0%
!!! GGAAACATTTCCCTTTTTTA+AGG - chr1_4:1240770-1240789 None:intergenic 30.0%
TAAATATCATCCCATTGCAT+GGG - chr1_4:1240828-1240847 None:intergenic 30.0%
TTAAATATCATCCCATTGCA+TGG - chr1_4:1240829-1240848 None:intergenic 30.0%
AAGTTTGGCAAACATGATAA+AGG + chr1_4:1240851-1240870 Msa0142340:three_prime_UTR 30.0%
TAAAATAAGCTATTGGGCTC+GGG - chr1_4:1235050-1235069 None:intergenic 35.0%
AGAGATTTGATTGTTGGGAA+GGG - chr1_4:1235238-1235257 None:intergenic 35.0%
AAGAGATTTGATTGTTGGGA+AGG - chr1_4:1235239-1235258 None:intergenic 35.0%
! AGTTAGTTAGTTTACTTGGG+CGG - chr1_4:1235469-1235488 None:intergenic 35.0%
! GAGGAGTTAGTTAGTTTACT+TGG - chr1_4:1235473-1235492 None:intergenic 35.0%
ATCGAATTGAATGGAAAAGG+AGG - chr1_4:1235492-1235511 None:intergenic 35.0%
AAGAGAGGAAGATATTGCTT+TGG - chr1_4:1235739-1235758 None:intergenic 35.0%
AAAGCAATATCTTCCTCTCT+TGG + chr1_4:1235738-1235757 Msa0142340:CDS 35.0%
AAGCAATATCTTCCTCTCTT+GGG + chr1_4:1235739-1235758 Msa0142340:CDS 35.0%
!! TTTCTTTGACTTGAAGCATG+CGG - chr1_4:1235880-1235899 None:intergenic 35.0%
AGTGTTATGGAAGAAAGAAG+AGG - chr1_4:1235956-1235975 None:intergenic 35.0%
AGACAGGATTCTGTTTACAA+TGG + chr1_4:1236075-1236094 Msa0142340:CDS 35.0%
! AGAGGTATGAAAAGAAACTC+TGG - chr1_4:1236204-1236223 None:intergenic 35.0%
!!! ATCATTGTTTTGGAAGGAAG+AGG - chr1_4:1236222-1236241 None:intergenic 35.0%
TTAACCAAATGGCAAGATTC+GGG - chr1_4:1236265-1236284 None:intergenic 35.0%
GTTAACCAAATGGCAAGATT+CGG - chr1_4:1236266-1236285 None:intergenic 35.0%
AAGCACAAAATCACATTGCT+AGG + chr1_4:1236362-1236381 Msa0142340:intron 35.0%
!! TTTAGTGAGAGTGTTATGGA+AGG + chr1_4:1237009-1237028 Msa0142340:intron 35.0%
TTTAGACTCTTGAGTGACAA+AGG - chr1_4:1237149-1237168 None:intergenic 35.0%
! TGTCTGAAATCCAATGTCTT+TGG + chr1_4:1237190-1237209 Msa0142340:intron 35.0%
AAGGAGACTATGAGATTCTA+TGG - chr1_4:1237679-1237698 None:intergenic 35.0%
! TGCATTCTCCCTCTAAAAAA+AGG + chr1_4:1237714-1237733 Msa0142340:intron 35.0%
AGAAGATTCCGATATATGGT+CGG + chr1_4:1237808-1237827 Msa0142340:intron 35.0%
!! GGTTCTATTCTAAAGTGCAT+AGG + chr1_4:1237900-1237919 Msa0142340:intron 35.0%
! ACCAAAGCTAGACTTTTGAA+GGG - chr1_4:1237989-1238008 None:intergenic 35.0%
GTATTGTATCTGTGCATCAT+AGG - chr1_4:1238030-1238049 None:intergenic 35.0%
CACAGATACAATACGAGTAT+CGG + chr1_4:1238036-1238055 Msa0142340:intron 35.0%
AAGAAAAAGAAGACATCGGT+TGG + chr1_4:1238269-1238288 Msa0142340:intron 35.0%
!!! TTTTGGAATATTGAGTGGGT+TGG + chr1_4:1238301-1238320 Msa0142340:intron 35.0%
!!! CTCATGCTCTGTTTTTTCTT+CGG - chr1_4:1238397-1238416 None:intergenic 35.0%
AAAACAGAGCATGAGGTAAT+TGG + chr1_4:1238402-1238421 Msa0142340:intron 35.0%
ATATGATTCCTTAGTCTCTG+TGG - chr1_4:1238465-1238484 None:intergenic 35.0%
GAGACTAAGGAATCATATCA+AGG + chr1_4:1238467-1238486 Msa0142340:intron 35.0%
ACTAGTATTGTGGGATTTAC+TGG - chr1_4:1238519-1238538 None:intergenic 35.0%
! TGTTTGTGTGCTAATTTGCA+AGG - chr1_4:1238582-1238601 None:intergenic 35.0%
ACAGCCAAGTTTACAGAAAT+TGG + chr1_4:1238599-1238618 Msa0142340:intron 35.0%
! ATTTAGTCACTTTCCCTTGA+TGG + chr1_4:1238901-1238920 Msa0142340:intron 35.0%
TGTTCTGACCACAAATGATT+CGG - chr1_4:1238974-1238993 None:intergenic 35.0%
ACTGGATAGAAAAACGCTAT+GGG + chr1_4:1238993-1239012 Msa0142340:CDS 35.0%
!! AAGGCTTTGAGCTTGTAAAT+AGG + chr1_4:1239142-1239161 Msa0142340:CDS 35.0%
GATAGCTCTTGGTTCATATA+GGG - chr1_4:1239256-1239275 None:intergenic 35.0%
GATGTTGGTATAAGATCCTT+CGG - chr1_4:1239500-1239519 None:intergenic 35.0%
AGGATCTTATACCAACATCA+AGG + chr1_4:1239501-1239520 Msa0142340:CDS 35.0%
ATAGTTGACTACCTTGATGT+TGG - chr1_4:1239515-1239534 None:intergenic 35.0%
CAACTATATTCTCTCTTGGT+AGG + chr1_4:1239528-1239547 Msa0142340:intron 35.0%
TATATTCTCTCTTGGTAGGA+TGG + chr1_4:1239532-1239551 Msa0142340:intron 35.0%
! ACTACTACTAGAGCATCATA+TGG - chr1_4:1239612-1239631 None:intergenic 35.0%
GTAGTAGTACAGCTACTATA+TGG + chr1_4:1239624-1239643 Msa0142340:intron 35.0%
AAATGCTAACAAGTGTCCTA+AGG + chr1_4:1239928-1239947 Msa0142340:intron 35.0%
AATGCTAACAAGTGTCCTAA+GGG + chr1_4:1239929-1239948 Msa0142340:intron 35.0%
ATTCCTTAACAAATGCCCTA+AGG + chr1_4:1240067-1240086 Msa0142340:intron 35.0%
TTCCTTAACAAATGCCCTAA+GGG + chr1_4:1240068-1240087 Msa0142340:intron 35.0%
!! AAATTTTCAGGCATCAAAGG+GGG - chr1_4:1240132-1240151 None:intergenic 35.0%
!! GCAAAATTTTCAGGCATCAA+AGG - chr1_4:1240135-1240154 None:intergenic 35.0%
! GCCTGAAAATTTTGCACTTT+TGG + chr1_4:1240140-1240159 Msa0142340:intron 35.0%
!! CCCAAAAGTGCAAAATTTTC+AGG - chr1_4:1240144-1240163 None:intergenic 35.0%
! AAATTTTGCACTTTTGGGCT+TGG + chr1_4:1240146-1240165 Msa0142340:intron 35.0%
! AATTTTGCACTTTTGGGCTT+GGG + chr1_4:1240147-1240166 Msa0142340:intron 35.0%
! AATTTCTTGCCATGTTTTGC+AGG + chr1_4:1240519-1240538 Msa0142340:intron 35.0%
TGACAATGATTTCCCTTCAA+TGG - chr1_4:1240632-1240651 None:intergenic 35.0%
! GAGATTTGTGTAAAAGCACA+TGG + chr1_4:1240738-1240757 Msa0142340:three_prime_UTR 35.0%
ATGGCCATTGCCTTAAAAAA+GGG + chr1_4:1240757-1240776 Msa0142340:three_prime_UTR 35.0%
AGTAGATTTCTTCTACCATG+CGG - chr1_4:1240791-1240810 None:intergenic 35.0%
AAATATCATCCCATTGCATG+GGG - chr1_4:1240827-1240846 None:intergenic 35.0%
AAAATAAGCTATTGGGCTCG+GGG - chr1_4:1235049-1235068 None:intergenic 40.0%
TCATCAATCTCTTCTTCTCC+CGG + chr1_4:1235114-1235133 Msa0142340:five_prime_UTR 40.0%
ACAGAGCCAAACAAACTAAC+CGG - chr1_4:1235136-1235155 None:intergenic 40.0%
TTCTTCTCTTCCTCTTCTTC+TGG + chr1_4:1235207-1235226 Msa0142340:CDS 40.0%
TCTTCTCTTCCTCTTCTTCT+GGG + chr1_4:1235208-1235227 Msa0142340:CDS 40.0%
ACAACTACAACTACAGCTAC+AGG + chr1_4:1235259-1235278 Msa0142340:CDS 40.0%
TCACTGTTACTGTAGTAGTC+AGG + chr1_4:1235349-1235368 Msa0142340:intron 40.0%
AGCAGCAGCATAACATATTG+AGG - chr1_4:1235430-1235449 None:intergenic 40.0%
!! TTGTTTGTTTCTGCAGGAAC+AGG + chr1_4:1235554-1235573 Msa0142340:intron 40.0%
AGGAAGATATTGCTTTGGCA+TGG - chr1_4:1235734-1235753 None:intergenic 40.0%
ACGTACCTATAGAGTGCAAT+GGG - chr1_4:1235769-1235788 None:intergenic 40.0%
TACGTACCTATAGAGTGCAA+TGG - chr1_4:1235770-1235789 None:intergenic 40.0%
!! TTCTTTGACTTGAAGCATGC+GGG - chr1_4:1235879-1235898 None:intergenic 40.0%
TGAAAGATGTCGTTGTAGGA+AGG - chr1_4:1235920-1235939 None:intergenic 40.0%
TCCTACAACGACATCTTTCA+AGG + chr1_4:1235920-1235939 Msa0142340:CDS 40.0%
ACCTTGAAAGATGTCGTTGT+AGG - chr1_4:1235924-1235943 None:intergenic 40.0%
! GAATCCTGTCTTTCTTTTCC+AGG - chr1_4:1236066-1236085 None:intergenic 40.0%
TTCTGTTTACAATGGCCTTC+AGG + chr1_4:1236083-1236102 Msa0142340:CDS 40.0%
AGAAAACAGCACATTCCTGA+AGG - chr1_4:1236101-1236120 None:intergenic 40.0%
GATATCAAAATTGGGGAGCA+CGG + chr1_4:1236429-1236448 Msa0142340:intron 40.0%
GTTTATCCCGTTAACACTCA+TGG + chr1_4:1236765-1236784 Msa0142340:intron 40.0%
TAAGGAGCCATGAGTGTTAA+CGG - chr1_4:1236775-1236794 None:intergenic 40.0%
ACATATCACTGCTTGTAGGT+GGG - chr1_4:1237038-1237057 None:intergenic 40.0%
CTACAAGCAGTGATATGTCA+GGG + chr1_4:1237040-1237059 Msa0142340:intron 40.0%
ACTGAATACCTCCTTGATTG+TGG - chr1_4:1237481-1237500 None:intergenic 40.0%
TCTTCGGCTACCTAAATCTT+AGG - chr1_4:1237772-1237791 None:intergenic 40.0%
GAGGAGAAGATTCCGATATA+TGG + chr1_4:1237804-1237823 Msa0142340:intron 40.0%
!! CCAAAGCTAGACTTTTGAAG+GGG - chr1_4:1237988-1238007 None:intergenic 40.0%
! GACCAAAGCTAGACTTTTGA+AGG - chr1_4:1237990-1238009 None:intergenic 40.0%
!! GAAATGAGGTATCGCCATAT+CGG - chr1_4:1238075-1238094 None:intergenic 40.0%
!!! TCGGTTGGACCGTTTTATTT+TGG + chr1_4:1238284-1238303 Msa0142340:intron 40.0%
CGAAGAAAAAACAGAGCATG+AGG + chr1_4:1238395-1238414 Msa0142340:intron 40.0%
AGCAGTTACGTAACTGTGAA+TGG - chr1_4:1238731-1238750 None:intergenic 40.0%
ACGTAACTGCTTTACAACTG+TGG + chr1_4:1238740-1238759 Msa0142340:intron 40.0%
!! CTGCAGAAAGATTAGCTTAC+AGG - chr1_4:1238944-1238963 None:intergenic 40.0%
CTGTAAGCTAATCTTTCTGC+AGG + chr1_4:1238942-1238961 Msa0142340:intron 40.0%
ATCATTTGTGGTCAGAACAC+TGG + chr1_4:1238975-1238994 Msa0142340:CDS 40.0%
CACTGGATAGAAAAACGCTA+TGG + chr1_4:1238992-1239011 Msa0142340:CDS 40.0%
GGATAGCTCTTGGTTCATAT+AGG - chr1_4:1239257-1239276 None:intergenic 40.0%
CAATATGTCTGGATAGCTCT+TGG - chr1_4:1239267-1239286 None:intergenic 40.0%
TTACCATGAATGACTCACCT+GGG - chr1_4:1239294-1239313 None:intergenic 40.0%
TTTACCATGAATGACTCACC+TGG - chr1_4:1239295-1239314 None:intergenic 40.0%
!! GTTGCCTTTCTGAAACTAAC+TGG + chr1_4:1239383-1239402 Msa0142340:intron 40.0%
TACAACCTTCTTTGCAGAGA+AGG + chr1_4:1239415-1239434 Msa0142340:intron 40.0%
TACTGACGATGTTTCCATTG+TGG + chr1_4:1239447-1239466 Msa0142340:CDS 40.0%
! ATGTTTAAGGTGCTCCACAA+TGG - chr1_4:1239464-1239483 None:intergenic 40.0%
CATCCTGTTTATATCACCGA+AGG + chr1_4:1239481-1239500 Msa0142340:CDS 40.0%
GATCCTTCGGTGATATAAAC+AGG - chr1_4:1239487-1239506 None:intergenic 40.0%
TTGGGCTTATGAGAATTGAG+AGG + chr1_4:1239689-1239708 Msa0142340:intron 40.0%
TGGGCTTATGAGAATTGAGA+GGG + chr1_4:1239690-1239709 Msa0142340:intron 40.0%
TATGCTAACAAGTGCCCTTA+GGG - chr1_4:1240085-1240104 None:intergenic 40.0%
TTATGCTAACAAGTGCCCTT+AGG - chr1_4:1240086-1240105 None:intergenic 40.0%
TTTGCCAATCTCACCATTGA+AGG + chr1_4:1240616-1240635 Msa0142340:three_prime_UTR 40.0%
TTGCCAATCTCACCATTGAA+GGG + chr1_4:1240617-1240636 Msa0142340:three_prime_UTR 40.0%
TTTCCCTTCAATGGTGAGAT+TGG - chr1_4:1240623-1240642 None:intergenic 40.0%
CATGGCCATTGCCTTAAAAA+AGG + chr1_4:1240756-1240775 Msa0142340:three_prime_UTR 40.0%
AAAAGGGAAATGTTTCCGCA+TGG + chr1_4:1240773-1240792 Msa0142340:three_prime_UTR 40.0%
!!! CTTTTCAGCTTTTTTGGGCC+CGG + chr1_4:1235001-1235020 Msa0142340:five_prime_UTR 45.0%
!! CTTCTCCCGGTTAGTTTGTT+TGG + chr1_4:1235127-1235146 Msa0142340:five_prime_UTR 45.0%
CAGAGCCAAACAAACTAACC+GGG - chr1_4:1235135-1235154 None:intergenic 45.0%
GTTACTGTAGTAGTCAGGTC+AGG + chr1_4:1235354-1235373 Msa0142340:intron 45.0%
! AGTTAGTTTACTTGGGCGGT+GGG - chr1_4:1235465-1235484 None:intergenic 45.0%
! TAGTTAGTTTACTTGGGCGG+TGG - chr1_4:1235466-1235485 None:intergenic 45.0%
ACCTATAGAGTGCAATGGGT+TGG - chr1_4:1235765-1235784 None:intergenic 45.0%
GTCTGGTTGGCAATTTCCTT+TGG - chr1_4:1236028-1236047 None:intergenic 45.0%
! GTGCAAATTTGAGGTCTGGT+TGG - chr1_4:1236041-1236060 None:intergenic 45.0%
TTCCAGGCAGTGCAAATTTG+AGG - chr1_4:1236050-1236069 None:intergenic 45.0%
ACTGCCTGGAAAAGAAAGAC+AGG + chr1_4:1236059-1236078 Msa0142340:CDS 45.0%
CAAACCCGAATCTTGCCATT+TGG + chr1_4:1236258-1236277 Msa0142340:intron 45.0%
GTATGGGCACGTTAACCAAA+TGG - chr1_4:1236276-1236295 None:intergenic 45.0%
AAGGAGCCATGAGTGTTAAC+GGG - chr1_4:1236774-1236793 None:intergenic 45.0%
GACATATCACTGCTTGTAGG+TGG - chr1_4:1237039-1237058 None:intergenic 45.0%
CCTGACATATCACTGCTTGT+AGG - chr1_4:1237042-1237061 None:intergenic 45.0%
CCTACAAGCAGTGATATGTC+AGG + chr1_4:1237039-1237058 Msa0142340:intron 45.0%
TTGGCAATCGCCAAAGACAT+TGG - chr1_4:1237203-1237222 None:intergenic 45.0%
TTGAATGGAGCTGCTGTTCT+TGG + chr1_4:1237441-1237460 Msa0142340:CDS 45.0%
TAGGCAGTCCGACCATATAT+CGG - chr1_4:1237819-1237838 None:intergenic 45.0%
! CCTTTCTTTTGCCACCTCAA+TGG - chr1_4:1237878-1237897 None:intergenic 45.0%
CCATTGAGGTGGCAAAAGAA+AGG + chr1_4:1237875-1237894 Msa0142340:intron 45.0%
TGAGGTGGCAAAAGAAAGGT+TGG + chr1_4:1237879-1237898 Msa0142340:intron 45.0%
!! CTAGACTTTTGAAGGGGTGT+TGG - chr1_4:1237982-1238001 None:intergenic 45.0%
! CCCCTTCAAAAGTCTAGCTT+TGG + chr1_4:1237985-1238004 Msa0142340:intron 45.0%
CTGCAAAGAACTGTGATGCA+CGG - chr1_4:1238433-1238452 None:intergenic 45.0%
! TTTTCCTGCCACAGAGACTA+AGG + chr1_4:1238454-1238473 Msa0142340:intron 45.0%
GGCAAACACCGAATCATTTG+TGG + chr1_4:1238963-1238982 Msa0142340:intron 45.0%
CATCTTTGCAGTTTGACCTG+TGG - chr1_4:1239030-1239049 None:intergenic 45.0%
TTATCAAACCCGAGTTGCTG+AGG + chr1_4:1239118-1239137 Msa0142340:CDS 45.0%
AAAGCCTTTCCTCAGCAACT+CGG - chr1_4:1239130-1239149 None:intergenic 45.0%
CGGAACAATGCTGAGAAGAT+AGG + chr1_4:1239361-1239380 Msa0142340:intron 45.0%
CAAGACCTTCTCTGCAAAGA+AGG - chr1_4:1239423-1239442 None:intergenic 45.0%
TCTCTCTTGGTAGGATGGTT+AGG + chr1_4:1239537-1239556 Msa0142340:intron 45.0%
TTTCTCTGACGTGCTTAGTC+GGG - chr1_4:1239665-1239684 None:intergenic 45.0%
CTTTCTCTGACGTGCTTAGT+CGG - chr1_4:1239666-1239685 None:intergenic 45.0%
!! AGCACGTCAGAGAAAGCATT+TGG + chr1_4:1239670-1239689 Msa0142340:intron 45.0%
!! GCACGTCAGAGAAAGCATTT+GGG + chr1_4:1239671-1239690 Msa0142340:intron 45.0%
!! ATGAGAATTGAGAGGGCGTT+TGG + chr1_4:1239697-1239716 Msa0142340:intron 45.0%
GCTTCTTATCAAGTGCCCTT+AGG - chr1_4:1239947-1239966 None:intergenic 45.0%
! TGCCCTTAGGGCATTTGTTA+AGG - chr1_4:1240073-1240092 None:intergenic 45.0%
GCTTGGGCGTAACTTATCTT+GGG + chr1_4:1240163-1240182 Msa0142340:intron 45.0%
GACTTGGATAACAGCGATCT+TGG + chr1_4:1240390-1240409 Msa0142340:intron 45.0%
!!! AGTTTATTTTTTATTTTTAT+CGG - chr1_4:1235095-1235114 None:intergenic 5.0%
!! GAATAAATAATAATATTAAT+AGG - chr1_4:1236000-1236019 None:intergenic 5.0%
! GCGAGAGGCGGATATGTTTT+GGG - chr1_4:1235027-1235046 None:intergenic 50.0%
!! GTTTGGCTCTGTGTGAGAGA+TGG + chr1_4:1235144-1235163 Msa0142340:exon 50.0%
AAGGGCAATCCCAGAAGAAG+AGG - chr1_4:1235220-1235239 None:intergenic 50.0%
GTTTCTGCAGGAACAGGAGA+AGG + chr1_4:1235560-1235579 Msa0142340:intron 50.0%
GCCAACCCATTGCACTCTAT+AGG + chr1_4:1235761-1235780 Msa0142340:CDS 50.0%
! GGCAGTGCAAATTTGAGGTC+TGG - chr1_4:1236045-1236064 None:intergenic 50.0%
GACCTCAAATTTGCACTGCC+TGG + chr1_4:1236045-1236064 Msa0142340:CDS 50.0%
!! TGTTCTTGGTGTCCCTGTGA+AGG + chr1_4:1237455-1237474 Msa0142340:CDS 50.0%
CCTTGATTGTGGCCTTCACA+GGG - chr1_4:1237470-1237489 None:intergenic 50.0%
TCCTTGATTGTGGCCTTCAC+AGG - chr1_4:1237471-1237490 None:intergenic 50.0%
TGTGAAGGCCACAATCAAGG+AGG + chr1_4:1237470-1237489 Msa0142340:CDS 50.0%
TCGGAATCTTCTCCTCTGCA+TGG - chr1_4:1237800-1237819 None:intergenic 50.0%
TCAATGGCTAGGCACCCATA+GGG - chr1_4:1237862-1237881 None:intergenic 50.0%
! CTTTTGCCACCTCAATGGCT+AGG - chr1_4:1237873-1237892 None:intergenic 50.0%
!! TAGTGCCTAGGCACTGAAGT+CGG + chr1_4:1237934-1237953 Msa0142340:intron 50.0%
GATTCCTTAGTCTCTGTGGC+AGG - chr1_4:1238461-1238480 None:intergenic 50.0%
AAACCCGAGTTGCTGAGGAA+AGG + chr1_4:1239123-1239142 Msa0142340:CDS 50.0%
AAGCCTTTCCTCAGCAACTC+GGG - chr1_4:1239129-1239148 None:intergenic 50.0%
TCCAGACATATTGACCACCC+AGG + chr1_4:1239274-1239293 Msa0142340:intron 50.0%
ACCTGGGTGGTCAATATGTC+TGG - chr1_4:1239278-1239297 None:intergenic 50.0%
CAGGCATCAAAGGGGGAATT+TGG - chr1_4:1240125-1240144 None:intergenic 50.0%
GGCTTGGGCGTAACTTATCT+TGG + chr1_4:1240162-1240181 Msa0142340:intron 50.0%
GGGCGTAACTTATCTTGGGT+TGG + chr1_4:1240167-1240186 Msa0142340:intron 50.0%
GCGTAGTCACCTGCAAAACA+TGG - chr1_4:1240531-1240550 None:intergenic 50.0%
ATTACCAGTGCCCCATGCAA+TGG + chr1_4:1240814-1240833 Msa0142340:three_prime_UTR 50.0%
TTACCAGTGCCCCATGCAAT+GGG + chr1_4:1240815-1240834 Msa0142340:three_prime_UTR 50.0%
!! AGGCGGATATGTTTTGGGCC+GGG - chr1_4:1235022-1235041 None:intergenic 55.0%
!! GAGGCGGATATGTTTTGGGC+CGG - chr1_4:1235023-1235042 None:intergenic 55.0%
! GGCGAGAGGCGGATATGTTT+TGG - chr1_4:1235028-1235047 None:intergenic 55.0%
TTTACTTGGGCGGTGGGAAG+TGG - chr1_4:1235459-1235478 None:intergenic 55.0%
TGGAGGGAAGGGCAAGAGAA+TGG + chr1_4:1235626-1235645 Msa0142340:CDS 55.0%
GGAGGGAAGGGCAAGAGAAT+GGG + chr1_4:1235627-1235646 Msa0142340:CDS 55.0%
CCCTGTGAAGGCCACAATCA+AGG + chr1_4:1237467-1237486 Msa0142340:CDS 55.0%
TGCACAGCACACTCAACGCA+AGG - chr1_4:1237698-1237717 None:intergenic 55.0%
CCTCTGCATGGTGTGCTCTT+CGG - chr1_4:1237788-1237807 None:intergenic 55.0%
CTCAATGGCTAGGCACCCAT+AGG - chr1_4:1237863-1237882 None:intergenic 55.0%
CTATGGGTGCCTAGCCATTG+AGG + chr1_4:1237861-1237880 Msa0142340:intron 55.0%
ATGGGAGATGCAGACTCCAC+AGG + chr1_4:1239011-1239030 Msa0142340:CDS 55.0%
CCATGAATGACTCACCTGGG+TGG - chr1_4:1239291-1239310 None:intergenic 55.0%
CCACCCAGGTGAGTCATTCA+TGG + chr1_4:1239288-1239307 Msa0142340:intron 55.0%
CGTGCTTAGTCGGGTCAAGT+GGG - chr1_4:1239656-1239675 None:intergenic 55.0%
ACGTGCTTAGTCGGGTCAAG+TGG - chr1_4:1239657-1239676 None:intergenic 55.0%
GTCTCCGTTGTACTGCTCGC+TGG + chr1_4:1235606-1235625 Msa0142340:CDS 60.0%
TCCGTTGTACTGCTCGCTGG+AGG + chr1_4:1235609-1235628 Msa0142340:CDS 60.0%
CCCTCCAGCGAGCAGTACAA+CGG - chr1_4:1235613-1235632 None:intergenic 60.0%
CCGTTGTACTGCTCGCTGGA+GGG + chr1_4:1235610-1235629 Msa0142340:CDS 60.0%
TGTACTGCTCGCTGGAGGGA+AGG + chr1_4:1235614-1235633 Msa0142340:CDS 60.0%
GTACTGCTCGCTGGAGGGAA+GGG + chr1_4:1235615-1235634 Msa0142340:CDS 60.0%
!! GCAATGGGTTGGCCCAAGAG+AGG - chr1_4:1235754-1235773 None:intergenic 60.0%
! CCGAAGAGCACACCATGCAG+AGG + chr1_4:1237785-1237804 Msa0142340:intron 60.0%
TGGGTGCCTAGCCATTGAGG+TGG + chr1_4:1237864-1237883 Msa0142340:intron 60.0%
!! CCTCACCGACTTCAGTGCCT+AGG - chr1_4:1237942-1237961 None:intergenic 60.0%
!! CCTAGGCACTGAAGTCGGTG+AGG + chr1_4:1237939-1237958 Msa0142340:intron 60.0%
CATCCCATTGCATGGGGCAC+TGG - chr1_4:1240821-1240840 None:intergenic 60.0%
! GGCACTGAAGTCGGTGAGGC+AGG + chr1_4:1237943-1237962 Msa0142340:intron 65.0%
ATTGGGCTCGGGGCGAGAGG+CGG - chr1_4:1235039-1235058 None:intergenic 70.0%
GCTATTGGGCTCGGGGCGAG+AGG - chr1_4:1235042-1235061 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1234971 1240911 1234971 ID=Msa0142340;Name=Msa0142340
chr1_4 mRNA 1234971 1240911 1234971 ID=Msa0142340-mRNA-1;Parent=Msa0142340;Name=Msa0142340-mRNA-1;_AED=0.24;_eAED=0.24;_QI=192|0.90|0.91|1|1|1|12|302|319
chr1_4 exon 1234971 1235280 1234971 ID=Msa0142340-mRNA-1:exon:384;Parent=Msa0142340-mRNA-1
chr1_4 exon 1235364 1235473 1235364 ID=Msa0142340-mRNA-1:exon:385;Parent=Msa0142340-mRNA-1
chr1_4 exon 1235570 1235650 1235570 ID=Msa0142340-mRNA-1:exon:386;Parent=Msa0142340-mRNA-1
chr1_4 exon 1235727 1235782 1235727 ID=Msa0142340-mRNA-1:exon:387;Parent=Msa0142340-mRNA-1
chr1_4 exon 1235862 1235941 1235862 ID=Msa0142340-mRNA-1:exon:388;Parent=Msa0142340-mRNA-1
chr1_4 exon 1236022 1236113 1236022 ID=Msa0142340-mRNA-1:exon:389;Parent=Msa0142340-mRNA-1
chr1_4 exon 1236822 1236899 1236822 ID=Msa0142340-mRNA-1:exon:390;Parent=Msa0142340-mRNA-1
chr1_4 exon 1237423 1237491 1237423 ID=Msa0142340-mRNA-1:exon:391;Parent=Msa0142340-mRNA-1
chr1_4 exon 1238964 1239032 1238964 ID=Msa0142340-mRNA-1:exon:392;Parent=Msa0142340-mRNA-1
chr1_4 exon 1239117 1239163 1239117 ID=Msa0142340-mRNA-1:exon:393;Parent=Msa0142340-mRNA-1
chr1_4 exon 1239432 1239522 1239432 ID=Msa0142340-mRNA-1:exon:394;Parent=Msa0142340-mRNA-1
chr1_4 exon 1240541 1240911 1240541 ID=Msa0142340-mRNA-1:exon:395;Parent=Msa0142340-mRNA-1
chr1_4 five_prime_UTR 1234971 1235162 1234971 ID=Msa0142340-mRNA-1:five_prime_utr;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1235163 1235280 1235163 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1235364 1235473 1235364 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1235570 1235650 1235570 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1235727 1235782 1235727 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1235862 1235941 1235862 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1236022 1236113 1236022 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1236822 1236899 1236822 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1237423 1237491 1237423 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1238964 1239032 1238964 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1239117 1239163 1239117 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1239432 1239522 1239432 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 CDS 1240541 1240609 1240541 ID=Msa0142340-mRNA-1:cds;Parent=Msa0142340-mRNA-1
chr1_4 three_prime_UTR 1240610 1240911 1240610 ID=Msa0142340-mRNA-1:three_prime_utr;Parent=Msa0142340-mRNA-1
Gene Sequence

>Msa0142340

ATGGAATTTGTGATTAAGTTTCAGCATTGTTCTTCTTCTTCTTCTTCTTCTCTTCCTCTTCTTCTGGGATTGCCCTTCCCAACAATCAAATCTCTTACAACTACAACTACAGCTACAGTAGTCAGGTCAGGTCCTCAAATATCTATAAACAACAACAACAAAAATGTTTTATTATCATCAACCTCAATATGTTATGCTGCTGCTGCTGCTCCACTTCCCACCGCCCAAGAACAGGAGAAGGATGTTGTCGTTAAAGACAGAAGCGTCTCCGTTGTACTGCTCGCTGGAGGGAAGGGCAAGAGAATGGGAGCTACCATGCCAAAGCAATATCTTCCTCTCTTGGGCCAACCCATTGCACTCTATAGTTTCTACACTTTCTCCCGCATGCTTCAAGTCAAAGAAATCATTGTCGTTTGCGATCCTTCCTACAACGACATCTTTCAAGATGCCAAAGGAAATTGCCAACCAGACCTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGTTTACAATGGCCTTCAGGAATGTGCTGCTGTTGATTCAAACTCTGAGCTTGTTTGTGTTCATGATTCTGCAAGACCTTTAGTGTTACAAGAAGATGTGAAAAAGGTCCTTAAAGATGGATTGTTGAATGGAGCTGCTGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAGGAGGCAAACACCGAATCATTTGTGGTCAGAACACTGGATAGAAAAACGCTATGGGAGATGCAGACTCCACAGATTATCAAACCCGAGTTGCTGAGGAAAGGCTTTGAGCTTGTAAATAGAGAAGGTCTTGAAGTTACTGACGATGTTTCCATTGTGGAGCACCTTAAACATCCTGTTTATATCACCGAAGGATCTTATACCAACATCAAGGTGACTACGCCTGATGATTTATTACTAGCAGAGAGAATATTGAATATAAATTCTGGGGAAAGTTCTTAA

Protein sequence

>Msa0142340

MEFVIKFQHCSSSSSSSLPLLLGLPFPTIKSLTTTTTATVVRSGPQISINNNNKNVLLSSTSICYAAAAAPLPTAQEQEKDVVVKDRSVSVVLLAGGKGKRMGATMPKQYLPLLGQPIALYSFYTFSRMLQVKEIIVVCDPSYNDIFQDAKGNCQPDLKFALPGKERQDSVYNGLQECAAVDSNSELVCVHDSARPLVLQEDVKKVLKDGLLNGAAVLGVPVKATIKEANTESFVVRTLDRKTLWEMQTPQIIKPELLRKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNINSGESS*