AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1067000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067000 MtrunA17_Chr7g0247841 98.324 537 9 0 1 537 1 537 0.0 1082
Msa1067000 MtrunA17_Chr8g0348831 80.827 532 95 3 7 537 15 540 0.0 883
Msa1067000 MtrunA17_Chr6g0475601 70.196 510 148 3 21 529 27 533 0.0 748
Msa1067000 MtrunA17_Chr7g0214221 51.303 499 240 2 22 519 30 526 3.21e-174 503
Msa1067000 MtrunA17_Chr1g0213851 54.545 231 103 1 287 517 1 229 1.09e-85 265
Msa1067000 MtrunA17_Chr1g0213841 45.133 113 61 1 174 285 6 118 1.65e-23 95.9
Msa1067000 MtrunA17_Chr1g0203091 30.769 221 112 6 341 523 145 362 3.33e-22 98.6
Msa1067000 MtrunA17_Chr3g0139491 31.076 251 141 10 274 515 89 316 4.08e-21 94.7
Msa1067000 MtrunA17_Chr1g0147151 35.256 156 86 5 345 500 162 302 7.76e-19 88.2
Msa1067000 MtrunA17_Chr1g0213831 34.021 97 64 0 37 133 30 126 2.47e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067000 AT1G01650.1 72.486 527 144 1 8 533 12 538 0.0 798
Msa1067000 AT1G63690.1 72.781 507 134 3 22 527 27 530 0.0 763
Msa1067000 AT1G63690.2 72.584 507 135 3 22 527 27 530 0.0 761
Msa1067000 AT1G01650.3 73.485 396 104 1 139 533 1 396 0.0 605
Msa1067000 AT1G01650.4 73.485 396 104 1 139 533 1 396 0.0 605
Msa1067000 AT1G01650.2 73.485 396 104 1 139 533 1 396 0.0 605
Msa1067000 AT2G43070.2 48.369 521 259 4 22 535 28 545 7.52e-162 471
Msa1067000 AT2G43070.1 48.738 515 260 3 22 535 28 539 9.64e-162 471
Msa1067000 AT2G43070.4 48.369 521 259 4 22 535 87 604 5.13e-161 471
Msa1067000 AT2G43070.3 48.738 515 260 3 22 535 87 598 7.21e-161 471
Msa1067000 AT1G05820.1 45.749 494 264 3 28 519 30 521 1.30e-145 430
Msa1067000 AT1G05820.2 45.895 475 253 3 28 500 30 502 1.34e-141 418
Msa1067000 AT1G05820.4 47.781 383 196 3 139 519 1 381 8.70e-121 361
Msa1067000 AT1G05820.3 41.910 377 215 3 28 402 30 404 3.21e-92 288
Msa1067000 AT4G33410.1 26.724 348 178 15 238 533 47 369 5.85e-21 95.1
Msa1067000 AT2G03120.1 34.503 171 97 5 345 515 161 316 6.20e-21 94.7

Find 145 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTTGAGGTTTGGTATT+TGG 0.124495 7_2:+61145184 None:intergenic
CCATTCTCTGTGCTTCTTAC+TGG 0.166120 7_2:-61146540 Msa1067000:CDS
CTTCTTCTTCTCTGTGTTCA+TGG 0.169898 7_2:-61149213 Msa1067000:CDS
TCCACACCATCAATTGAAAT+TGG 0.185349 7_2:+61147520 None:intergenic
CTTCTTTCCCAATGACAAAA+AGG 0.201334 7_2:+61143889 None:intergenic
GGTTACAGTGTCATCGGTTT+CGG 0.211475 7_2:-61144774 Msa1067000:CDS
CATAGCATTCGCTGTGGTTT+GGG 0.211873 7_2:-61145436 Msa1067000:CDS
CCTTCCTATATGACATCTTC+TGG 0.226829 7_2:-61145024 Msa1067000:CDS
GTTTATGCTTTACAAACTAA+TGG 0.249829 7_2:-61146144 Msa1067000:CDS
TGAGCAAGAGAAGCTATTAA+AGG 0.254085 7_2:-61146488 Msa1067000:intron
GTTACAGTGTCATCGGTTTC+GGG 0.257862 7_2:-61144773 Msa1067000:CDS
ATACATAGCTTTGAATTTGA+TGG 0.290429 7_2:-61144347 Msa1067000:CDS
AATGAAACCGATATTGATAT+TGG 0.297635 7_2:-61146863 Msa1067000:CDS
AAAGTTCCAATTTCAATTGA+TGG 0.322977 7_2:-61147526 Msa1067000:CDS
TTGTCACATCCAGGTTTCTT+AGG 0.323154 7_2:+61149137 None:intergenic
AACTAGAATACCTTATTCTT+AGG 0.323199 7_2:+61147382 None:intergenic
GCATAGCATTCGCTGTGGTT+TGG 0.331467 7_2:-61145437 Msa1067000:CDS
ACCGCGTTTATTCGATCCTT+GGG 0.332274 7_2:-61144799 Msa1067000:CDS
CTTTAGCGTTATTTATAATC+AGG 0.343087 7_2:+61147132 None:intergenic
GCTCACGGGCGAGATCATTT+TGG 0.348166 7_2:-61147222 Msa1067000:CDS
GGGTATCGCTTTGATAATTA+CGG 0.355376 7_2:-61145220 Msa1067000:CDS
TTGTAGCAAACCTAAGAATA+AGG 0.355750 7_2:-61147392 Msa1067000:intron
AAGATGGTTCATTGATGTTC+TGG 0.357441 7_2:-61146120 Msa1067000:CDS
GTCGGTGTTGGTGCAAGATT+TGG 0.369570 7_2:-61147484 Msa1067000:CDS
ATATACTTTACAGGTATGAT+TGG 0.373989 7_2:-61144546 Msa1067000:intron
CGGCAATGGCAACTCTAGTA+TGG 0.378558 7_2:+61147428 None:intergenic
TTCTTCAGCTATATTTGCCT+TGG 0.386977 7_2:+61147172 None:intergenic
TTTATGCTTTACAAACTAAT+GGG 0.398548 7_2:-61146143 Msa1067000:CDS
GTGAGAATCTTGATTGTAGA+TGG 0.398863 7_2:+61149269 None:intergenic
CGCGGTATCTTGAGCAGCAT+GGG 0.404406 7_2:+61144816 None:intergenic
AGGTATTCCAATATCAATAT+CGG 0.409099 7_2:+61146856 None:intergenic
ACGATGAGTGCCTATGGTTT+AGG 0.409248 7_2:-61144484 Msa1067000:intron
CCAAAGTACAAACAGATTCA+TGG 0.410036 7_2:+61143581 None:intergenic
ATGTGACAACAACTTTGTTC+TGG 0.416582 7_2:-61149123 Msa1067000:intron
TACCGCGTTTATTCGATCCT+TGG 0.419818 7_2:-61144800 Msa1067000:CDS
ATAATCATCACCTTGAGGTT+TGG 0.432877 7_2:+61145177 None:intergenic
GGGACTGCAAACTTGCTTAG+TGG 0.435026 7_2:-61145705 Msa1067000:CDS
ATTTGAGGTGTGAAAAGAAA+AGG 0.437729 7_2:+61149294 None:intergenic
TTTGAGGTGTGAAAAGAAAA+GGG 0.438964 7_2:+61149295 None:intergenic
AAGAATATCTTGACCAATCC+AGG 0.442943 7_2:+61145389 None:intergenic
TCCAATTTCAATTGATGGTG+TGG 0.445372 7_2:-61147521 Msa1067000:CDS
TTTACTAACCAAGTGTAAAT+GGG 0.447535 7_2:+61144290 None:intergenic
CCATGAATCTGTTTGTACTT+TGG 0.451169 7_2:-61143581 Msa1067000:three_prime_UTR
GTGCTTCTTACTGGTCTGCC+TGG 0.461814 7_2:-61146531 Msa1067000:CDS
GGAGACTTATAACAAATCAT+AGG 0.463251 7_2:-61143740 Msa1067000:three_prime_UTR
AACACCCTCTCTGGCAGTCC+AGG 0.466046 7_2:+61146513 None:intergenic
CTTCCTATATGACATCTTCT+GGG 0.469044 7_2:-61145023 Msa1067000:CDS
TTTACAAACTAATGGGAAGA+TGG 0.472450 7_2:-61146136 Msa1067000:CDS
CCCTCTTGACTGTTAGATGT+TGG 0.473230 7_2:-61143609 Msa1067000:three_prime_UTR
TGGGGTGGTTACAGTGTCAT+CGG 0.481076 7_2:-61144780 Msa1067000:CDS
ACACCCAGAAGATGTCATAT+AGG 0.489454 7_2:+61145020 None:intergenic
ACAAAGTTGTTGTCACATCC+AGG 0.490168 7_2:+61149128 None:intergenic
TAGCTTTGAATTTGATGGAT+GGG 0.490494 7_2:-61144342 Msa1067000:CDS
GCGGGAGATTACTCGTCTAC+TGG 0.490969 7_2:+61143791 None:intergenic
TTAGGTTTGCTACAACAGTC+AGG 0.492193 7_2:+61147400 None:intergenic
TGCAAGATTTGGACCTACAT+TGG 0.494196 7_2:-61147473 Msa1067000:CDS
TTGCTCAATAACACCCTCTC+TGG 0.497863 7_2:+61146504 None:intergenic
AACACAGAGAAGAAGAAGAT+AGG 0.498115 7_2:+61149218 None:intergenic
ACCTGCTGTCATGCTTCCAC+TGG 0.500327 7_2:-61146837 Msa1067000:CDS
ATGTGAAACAGCACCGAAGA+AGG 0.501888 7_2:+61145485 None:intergenic
ATACTCTCCACGACGTCCAC+AGG 0.502854 7_2:-61146605 Msa1067000:CDS
TCTTGACTGTTAGATGTTGG+AGG 0.506148 7_2:-61143606 Msa1067000:three_prime_UTR
TATGTGAAAGTACCCTTCTT+CGG 0.508554 7_2:-61145498 Msa1067000:CDS
CCATGAGAGTGTGATGATAG+TGG 0.511765 7_2:-61144978 Msa1067000:intron
AAGAAGATAGGTGTAAAAGA+AGG 0.514055 7_2:+61149230 None:intergenic
CTGATTATAAATAACGCTAA+AGG 0.517532 7_2:-61147131 Msa1067000:intron
TGGTAGTACAAAGGAAGAAG+AGG 0.519622 7_2:+61149376 None:intergenic
GTCATGCTTCCACTGGATGC+CGG 0.519867 7_2:-61146830 Msa1067000:CDS
TTGTGGACGATGAGTGCCTA+TGG 0.521690 7_2:-61144490 Msa1067000:CDS
CCACTATCATCACACTCTCA+TGG 0.522407 7_2:+61144978 None:intergenic
GGGACTATATACAGCAAAGC+TGG 0.523296 7_2:+61144310 None:intergenic
CCAGTAAGAAGCACAGAGAA+TGG 0.528439 7_2:+61146540 None:intergenic
TCCAACATCTAACAGTCAAG+AGG 0.532187 7_2:+61143608 None:intergenic
GCAAATATAGCTGAAGAAGC+TGG 0.537504 7_2:-61147167 Msa1067000:CDS
GTGCCTTGTACAATATCGTT+AGG 0.539714 7_2:+61143664 None:intergenic
TCTGCCTGGACTGCCAGAGA+GGG 0.540666 7_2:-61146517 Msa1067000:CDS
TTCGAGCAGGATACTTCTTG+TGG 0.550885 7_2:-61144507 Msa1067000:CDS
CGTGTATCGTATGCCTGGAT+TGG 0.553817 7_2:-61145402 Msa1067000:CDS
AGTATTGCTCCTAAGAAACC+TGG 0.554160 7_2:-61149146 Msa1067000:CDS
AGCGTTATTTATAATCAGGA+TGG 0.554823 7_2:+61147136 None:intergenic
GAAGAAGAGGAAATCGTGAA+GGG 0.554969 7_2:+61149389 None:intergenic
CAGCCTAACGATATTGTACA+AGG 0.555015 7_2:-61143667 Msa1067000:three_prime_UTR
GTCTGCCTGGACTGCCAGAG+AGG 0.555701 7_2:-61146518 Msa1067000:CDS
ACGCGGTATCTTGAGCAGCA+TGG 0.557275 7_2:+61144815 None:intergenic
GAAAATGCTACTAAAAGCCC+TGG 0.557670 7_2:+61144738 None:intergenic
TCCTCTTTGATGTGAGGGCA+AGG 0.564220 7_2:+61143821 None:intergenic
ATAGCTTTGAATTTGATGGA+TGG 0.564608 7_2:-61144343 Msa1067000:CDS
CTTCTAAATATAGAGAATGC+TGG 0.565274 7_2:-61146236 Msa1067000:CDS
ATGGTTCATTGATGTTCTGG+TGG 0.565632 7_2:-61146117 Msa1067000:CDS
CAGCGAATGCTATGCAGAAG+GGG 0.567384 7_2:+61145445 None:intergenic
TCCAGTGGAAGCATGACAGC+AGG 0.569868 7_2:+61146836 None:intergenic
GGTGATAAGAGTGGAGAAGA+TGG 0.570626 7_2:-61144843 Msa1067000:CDS
AACCTACAATACTATTCCGC+GGG 0.570740 7_2:+61143773 None:intergenic
CTATAGCATACCTAAACCAT+AGG 0.572085 7_2:+61144474 None:intergenic
TCAATTGATGGTGTGGAAAG+CGG 0.573126 7_2:-61147514 Msa1067000:CDS
ATAGCATTCGCTGTGGTTTG+GGG 0.575530 7_2:-61145435 Msa1067000:CDS
AGCGGCGAGTATGTCGGTGT+TGG 0.576766 7_2:-61147496 Msa1067000:CDS
ACAGCGAATGCTATGCAGAA+GGG 0.578803 7_2:+61145444 None:intergenic
TGATGATCCTCTTTGATGTG+AGG 0.582482 7_2:+61143815 None:intergenic
TATATAGTCCCATTTACACT+TGG 0.584363 7_2:-61144298 Msa1067000:intron
AAAATGTTCATAGTTTCAGA+TGG 0.586719 7_2:-61145542 Msa1067000:intron
AGATGAAGGTGGTAGTACAA+AGG 0.588109 7_2:+61149367 None:intergenic
AAGGCTTCACCGGCATCCAG+TGG 0.588506 7_2:+61146821 None:intergenic
CGTTTATTCGATCCTTGGGG+TGG 0.589284 7_2:-61144795 Msa1067000:CDS
GCGAAGAGGAACCTTCGAGC+AGG 0.590157 7_2:-61144520 Msa1067000:CDS
CAATCCAGGCATACGATACA+CGG 0.590284 7_2:+61145403 None:intergenic
TATATACAAAACAAGTCCAC+AGG 0.595990 7_2:-61146791 Msa1067000:intron
TTGAGGTGTGAAAAGAAAAG+GGG 0.596596 7_2:+61149296 None:intergenic
CACAGCGAATGCTATGCAGA+AGG 0.597296 7_2:+61145443 None:intergenic
TTGAATTTGATGGATGGGCA+TGG 0.598006 7_2:-61144337 Msa1067000:CDS
TTGTCATTGGGAAAGAAGAG+AGG 0.601284 7_2:-61143884 Msa1067000:CDS
CCAGAAGATGTCATATAGGA+AGG 0.604622 7_2:+61145024 None:intergenic
CCAACATCTAACAGTCAAGA+GGG 0.606250 7_2:+61143609 None:intergenic
TTGTGAAACTACATTGTCCT+CGG 0.612612 7_2:+61147195 None:intergenic
TGTCCAAATACCAAACCTCA+AGG 0.614521 7_2:-61145187 Msa1067000:intron
GATGATCCTCTTTGATGTGA+GGG 0.616637 7_2:+61143816 None:intergenic
AAACCTACAATACTATTCCG+CGG 0.619560 7_2:+61143772 None:intergenic
GGTGTGAAAAGAAAAGGGGT+TGG 0.620289 7_2:+61149300 None:intergenic
TGTGAAACAGCACCGAAGAA+GGG 0.620570 7_2:+61145486 None:intergenic
GCTACAACAGTCAGGAGGGT+CGG 0.621755 7_2:+61147408 None:intergenic
AAGAAGAGGAAATCGTGAAG+GGG 0.624384 7_2:+61149390 None:intergenic
ACAGTCAGGAGGGTCGGCAA+TGG 0.630961 7_2:+61147414 None:intergenic
GTAGCTCGCGGTGATAAGAG+TGG 0.630975 7_2:-61144852 Msa1067000:CDS
GTTTGCTACAACAGTCAGGA+GGG 0.632295 7_2:+61147404 None:intergenic
GTGGAAAGCGGCGAGTATGT+CGG 0.632476 7_2:-61147502 Msa1067000:CDS
GGAAGAAGAGGAAATCGTGA+AGG 0.633839 7_2:+61149388 None:intergenic
TGATTGTAGATGGAAATTTG+AGG 0.635882 7_2:+61149279 None:intergenic
CCGCGTTTATTCGATCCTTG+GGG 0.643328 7_2:-61144798 Msa1067000:CDS
ACATCGACCTGTGGACGTCG+TGG 0.644315 7_2:+61146598 None:intergenic
ACAAGAAGTATCCTGCTCGA+AGG 0.648586 7_2:+61144509 None:intergenic
TTACAGTGTCATCGGTTTCG+GGG 0.651346 7_2:-61144772 Msa1067000:CDS
AACGAATGAAAGTGCTGCCG+TGG 0.651931 7_2:+61146187 None:intergenic
GGTTTGCTACAACAGTCAGG+AGG 0.652355 7_2:+61147403 None:intergenic
GCCTTGCCCTCACATCAAAG+AGG 0.653911 7_2:-61143822 Msa1067000:CDS
TCAAAGCTATGTATGTGACA+AGG 0.659484 7_2:+61144356 None:intergenic
GGTATGATTGGCTAGCGAAG+AGG 0.666042 7_2:-61144534 Msa1067000:CDS
ACAATGTAGTTTCACAACCA+AGG 0.675341 7_2:-61147189 Msa1067000:CDS
AGCGAATGCTATGCAGAAGG+GGG 0.677222 7_2:+61145446 None:intergenic
ACTTCTTTACAGGTAGCTCG+CGG 0.677537 7_2:-61144864 Msa1067000:intron
CTTCTGCATAGCATTCGCTG+TGG 0.687281 7_2:-61145442 Msa1067000:CDS
GCGGTATCTTGAGCAGCATG+GGG 0.687520 7_2:+61144817 None:intergenic
ACTTCTGCAACATCGACCTG+TGG 0.688487 7_2:+61146589 None:intergenic
ATGACACTGTAACCACCCCA+AGG 0.695167 7_2:+61144783 None:intergenic
CCCCAAGGATCGAATAAACG+CGG 0.705852 7_2:+61144798 None:intergenic
AGTAGACGAGTAATCTCCCG+CGG 0.729711 7_2:-61143789 Msa1067000:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATATATAGAAATTTA+TGG - chr7_2:61147660-61147679 Msa1067000:intron 10.0%
!! TATATCTTTGTAAAGAAAAA+TGG + chr7_2:61143604-61143623 None:intergenic 15.0%
!!! TTAATAGAATTGATTTCTAT+TGG - chr7_2:61144255-61144274 Msa1067000:intron 15.0%
!! ACTTTCTAATAGTTAATAAA+GGG + chr7_2:61144529-61144548 None:intergenic 15.0%
!! AAAAAAATAAATTACACTAC+AGG + chr7_2:61145881-61145900 None:intergenic 15.0%
!!! AAAATTTAGTATTGGAAAAA+AGG + chr7_2:61145905-61145924 None:intergenic 15.0%
!!! TTTTGTTTTTCTAACAAATT+AGG + chr7_2:61145972-61145991 None:intergenic 15.0%
!!! GTTTTGTATATATTTTTTCA+AGG + chr7_2:61146143-61146162 None:intergenic 15.0%
!!! AATGTTATGTATTTTGTTAA+TGG - chr7_2:61148349-61148368 Msa1067000:intron 15.0%
!! TAACAAATCAAAAAAAATAG+CGG - chr7_2:61148750-61148769 Msa1067000:intron 15.0%
!! ATATACCAAAATTAGCATAA+TGG + chr7_2:61144368-61144387 None:intergenic 20.0%
!!! AAAAAAGAGTAAGTTTTAAG+TGG + chr7_2:61144487-61144506 None:intergenic 20.0%
!!! AGTTAATAAAGGGTAATTTT+TGG + chr7_2:61144519-61144538 None:intergenic 20.0%
!! CACTTTCTAATAGTTAATAA+AGG + chr7_2:61144530-61144549 None:intergenic 20.0%
!! TATTAACTATTAGAAAGTGA+TGG - chr7_2:61144531-61144550 Msa1067000:CDS 20.0%
!! AAGAATGAGAAAAATTCTTA+AGG - chr7_2:61144566-61144585 Msa1067000:intron 20.0%
!! TATTATTTATAAGCTTGTCA+AGG + chr7_2:61144827-61144846 None:intergenic 20.0%
!! ATAAAAAGAAGTTAATGTTG+AGG - chr7_2:61145159-61145178 Msa1067000:intron 20.0%
!! AATGTATTCAAAGTTTGAAA+TGG - chr7_2:61145187-61145206 Msa1067000:intron 20.0%
!! TACTCATAGAAAATAGAAAT+AGG + chr7_2:61145329-61145348 None:intergenic 20.0%
!!! TATTTTCTATGAGTATTGAT+AGG - chr7_2:61145334-61145353 Msa1067000:intron 20.0%
!! ATAGAACATACTGAAAAATA+AGG - chr7_2:61145590-61145609 Msa1067000:intron 20.0%
!!! AAATTCTAGAGCTTTTAATA+TGG + chr7_2:61145653-61145672 None:intergenic 20.0%
!! ACAAACTGAAAATTTAGTAT+TGG + chr7_2:61145913-61145932 None:intergenic 20.0%
!!! AATACTAAATTTTCAGTTTG+TGG - chr7_2:61145912-61145931 Msa1067000:intron 20.0%
!!! ATTTTATATCCTTATTTTGC+AGG - chr7_2:61146034-61146053 Msa1067000:intron 20.0%
!! GAAAGAAAACAAACTATTAA+AGG + chr7_2:61146574-61146593 None:intergenic 20.0%
!!! ATTATTTTGGTCATTTATGA+AGG - chr7_2:61146602-61146621 Msa1067000:CDS 20.0%
!! TTTATGCTTTACAAACTAAT+GGG - chr7_2:61146799-61146818 Msa1067000:CDS 20.0%
!!! ATATTTTGTAACTTCAAATC+CGG + chr7_2:61147025-61147044 None:intergenic 20.0%
!!! ATAATTTAAAAGTGTCTCAA+AGG - chr7_2:61147051-61147070 Msa1067000:intron 20.0%
!! ATTTATTATTCCAAACACTT+TGG - chr7_2:61147113-61147132 Msa1067000:intron 20.0%
!!! TGTCAATTCAATATCATTTT+GGG + chr7_2:61147378-61147397 None:intergenic 20.0%
!!! ATGTCAATTCAATATCATTT+TGG + chr7_2:61147379-61147398 None:intergenic 20.0%
!!! ATTTTTAATCTTCTCTTTTC+AGG - chr7_2:61147701-61147720 Msa1067000:intron 20.0%
!!! TTTTTAATCTTCTCTTTTCA+GGG - chr7_2:61147702-61147721 Msa1067000:intron 20.0%
!!! AGTGTCTTTATTTGTAAAAT+AGG + chr7_2:61147850-61147869 None:intergenic 20.0%
!!! TTTTACAAATAAAGACACTA+AGG - chr7_2:61147851-61147870 Msa1067000:intron 20.0%
!! AAATCAAACTTTGTATAGAA+TGG + chr7_2:61148021-61148040 None:intergenic 20.0%
!!! TAATTTTCCTTGATTATGTT+TGG - chr7_2:61148519-61148538 Msa1067000:intron 20.0%
!!! TTTTTGAGAAAATTGTTCAT+AGG - chr7_2:61149403-61149422 Msa1067000:five_prime_UTR 20.0%
! AAGAAAAATGGAAAAGATGA+AGG + chr7_2:61143592-61143611 None:intergenic 25.0%
!!! TTTTGATTTGATTTGATGCT+AGG - chr7_2:61143945-61143964 Msa1067000:intron 25.0%
!!! TATTTTTGTGGAAAATTGAG+TGG - chr7_2:61144014-61144033 Msa1067000:intron 25.0%
!! ATTTTTGTGGAAAATTGAGT+GGG - chr7_2:61144015-61144034 Msa1067000:intron 25.0%
! ATACCAGAATGATTTGATTA+AGG - chr7_2:61144226-61144245 Msa1067000:intron 25.0%
!!! TTTGTTTGTTTTTATTTCCC+TGG - chr7_2:61144309-61144328 Msa1067000:CDS 25.0%
!! AGATTCCATTATGCTAATTT+TGG - chr7_2:61144360-61144379 Msa1067000:CDS 25.0%
! GATTGTTTGGATAAACTAAA+CGG + chr7_2:61144411-61144430 None:intergenic 25.0%
! AAAAATTCTTAAGGTCTGTT+TGG - chr7_2:61144575-61144594 Msa1067000:intron 25.0%
! CAAAAATAAGTCAATCCAAA+CGG - chr7_2:61144887-61144906 Msa1067000:intron 25.0%
! TCTTTGGATAAACAACTTAA+GGG + chr7_2:61144914-61144933 None:intergenic 25.0%
!!! TCTTGATTAGTCTTCATTAA+TGG - chr7_2:61145123-61145142 Msa1067000:intron 25.0%
!!! TCTTCATTAATGGTTTGTTT+TGG - chr7_2:61145133-61145152 Msa1067000:intron 25.0%
!!! GAAGTATGTATGAGTTTTTT+CGG - chr7_2:61145362-61145381 Msa1067000:intron 25.0%
! AAAGTTCCAATTTCAATTGA+TGG - chr7_2:61145416-61145435 Msa1067000:CDS 25.0%
!!! TTTTCTTTTGATTCCAATGT+AGG + chr7_2:61145485-61145504 None:intergenic 25.0%
! AACTAGAATACCTTATTCTT+AGG + chr7_2:61145563-61145582 None:intergenic 25.0%
! CTTTAGCGTTATTTATAATC+AGG + chr7_2:61145813-61145832 None:intergenic 25.0%
! CTGATTATAAATAACGCTAA+AGG - chr7_2:61145811-61145830 Msa1067000:intron 25.0%
!! AATTTTCAGTTTGTGGTTAT+AGG - chr7_2:61145919-61145938 Msa1067000:intron 25.0%
! AATGAAACCGATATTGATAT+TGG - chr7_2:61146079-61146098 Msa1067000:intron 25.0%
! AGGTATTCCAATATCAATAT+CGG + chr7_2:61146089-61146108 None:intergenic 25.0%
! GTAATTAATTATGCTTTCCT+TGG - chr7_2:61146211-61146230 Msa1067000:CDS 25.0%
!!! AATTTTTTTAAATCTCCCTG+TGG + chr7_2:61146237-61146256 None:intergenic 25.0%
!!! TTACATTTTGATACCTAATC+TGG - chr7_2:61146260-61146279 Msa1067000:intron 25.0%
!!! ATGTTGCAGAAGTATTTTTA+TGG - chr7_2:61146363-61146382 Msa1067000:intron 25.0%
!!! AGAAGTATTTTTATGGCTTA+TGG - chr7_2:61146370-61146389 Msa1067000:intron 25.0%
! CGAATAAATTTGACATGAAA+AGG + chr7_2:61146490-61146509 None:intergenic 25.0%
!!! CTTTCTGAGATGAATTATTT+TGG - chr7_2:61146589-61146608 Msa1067000:CDS 25.0%
! TATAGATAATTTACCATTGC+AGG - chr7_2:61146669-61146688 Msa1067000:intron 25.0%
! GTTTATGCTTTACAAACTAA+TGG - chr7_2:61146798-61146817 Msa1067000:CDS 25.0%
!! AATTTGAAAACCAAAGTGTT+TGG + chr7_2:61147126-61147145 None:intergenic 25.0%
! AAAATGTTCATAGTTTCAGA+TGG - chr7_2:61147400-61147419 Msa1067000:CDS 25.0%
! AAAACATGAACCAAAGAAAA+AGG + chr7_2:61147624-61147643 None:intergenic 25.0%
!!! CTTCATTTTTTTACTCTTTC+TGG - chr7_2:61147793-61147812 Msa1067000:intron 25.0%
!! AGGTATACATTCTTTTTACA+AGG - chr7_2:61147871-61147890 Msa1067000:intron 25.0%
!! ATACATTCTTTTTACAAGGT+TGG - chr7_2:61147875-61147894 Msa1067000:intron 25.0%
! TTTGTATAGAATGGTAGTAA+CGG + chr7_2:61148012-61148031 None:intergenic 25.0%
!! TTTTAGTAGCATTTTCGTTA+AGG - chr7_2:61148211-61148230 Msa1067000:intron 25.0%
! GTTAAATTGAAAATCTCACA+TGG - chr7_2:61148233-61148252 Msa1067000:intron 25.0%
! ATCCTTGTAACAAAAAAGTT+TGG - chr7_2:61148315-61148334 Msa1067000:intron 25.0%
!! AATACATAACATTCTTTTCC+TGG + chr7_2:61148342-61148361 None:intergenic 25.0%
! ATATACTTTACAGGTATGAT+TGG - chr7_2:61148396-61148415 Msa1067000:intron 25.0%
!! ATGCTATAGTTTTCAATGAT+AGG - chr7_2:61148482-61148501 Msa1067000:intron 25.0%
!!! ATACATAGCTTTGAATTTGA+TGG - chr7_2:61148595-61148614 Msa1067000:intron 25.0%
! TTTACTAACCAAGTGTAAAT+GGG + chr7_2:61148655-61148674 None:intergenic 25.0%
!! TTTTACTAACCAAGTGTAAA+TGG + chr7_2:61148656-61148675 None:intergenic 25.0%
!!! TTTGATTTGTTATTGACTTC+AGG + chr7_2:61148742-61148761 None:intergenic 25.0%
! TATCGTTAAATAGATAACAC+TGG + chr7_2:61148796-61148815 None:intergenic 25.0%
! ACCTAATAATATGCTTCATA+TGG + chr7_2:61148980-61148999 None:intergenic 25.0%
!!! TATTGTAGGTTTTAGTTTAC+AGG - chr7_2:61149181-61149200 Msa1067000:CDS 25.0%
AAAAATGGAAAAGATGAAGG+TGG + chr7_2:61143589-61143608 None:intergenic 30.0%
! TTTGAGGTGTGAAAAGAAAA+GGG + chr7_2:61143650-61143669 None:intergenic 30.0%
! ATTTGAGGTGTGAAAAGAAA+AGG + chr7_2:61143651-61143670 None:intergenic 30.0%
TGATTGTAGATGGAAATTTG+AGG + chr7_2:61143666-61143685 None:intergenic 30.0%
AAGAAGATAGGTGTAAAAGA+AGG + chr7_2:61143715-61143734 None:intergenic 30.0%
!!! TGCTTTGAAATTTTCTTGCT+TGG - chr7_2:61143875-61143894 Msa1067000:CDS 30.0%
AAGCCTTAATCAAATCATTC+TGG + chr7_2:61144232-61144251 None:intergenic 30.0%
TTTACCTATTGCAAAAACCA+GGG + chr7_2:61144329-61144348 None:intergenic 30.0%
! TTTTACCTATTGCAAAAACC+AGG + chr7_2:61144330-61144349 None:intergenic 30.0%
TGACAACTTTCATGATTGTT+TGG + chr7_2:61144424-61144443 None:intergenic 30.0%
TAACTATTAGAAAGTGATGG+TGG - chr7_2:61144534-61144553 Msa1067000:CDS 30.0%
AACTATTAGAAAGTGATGGT+GGG - chr7_2:61144535-61144554 Msa1067000:CDS 30.0%
! CTTATTTCTTTAAGCTCTCT+AGG - chr7_2:61144645-61144664 Msa1067000:intron 30.0%
CTTGTTCTATAAGCGTTAAA+GGG - chr7_2:61144749-61144768 Msa1067000:CDS 30.0%
! TGCAATTTTCGTAATCCAAA+CGG + chr7_2:61144776-61144795 None:intergenic 30.0%
GTCTTTGGATAAACAACTTA+AGG + chr7_2:61144915-61144934 None:intergenic 30.0%
GATTTCAGCAAACAACTATA+TGG - chr7_2:61145303-61145322 Msa1067000:intron 30.0%
TAACCTATCGAAAGAAAAAC+CGG + chr7_2:61145397-61145416 None:intergenic 30.0%
TTGTAGCAAACCTAAGAATA+AGG - chr7_2:61145550-61145569 Msa1067000:intron 30.0%
! CTTGAAATTTTGTTAGCTCA+CGG - chr7_2:61145705-61145724 Msa1067000:CDS 30.0%
! TTGAAATTTTGTTAGCTCAC+GGG - chr7_2:61145706-61145725 Msa1067000:CDS 30.0%
AGCGTTATTTATAATCAGGA+TGG + chr7_2:61145809-61145828 None:intergenic 30.0%
TTGAAAAGTCCTGCAAAATA+AGG + chr7_2:61146046-61146065 None:intergenic 30.0%
!!! ATATTTTTTCAAGGCTTCAC+CGG + chr7_2:61146134-61146153 None:intergenic 30.0%
TATATACAAAACAAGTCCAC+AGG - chr7_2:61146151-61146170 Msa1067000:CDS 30.0%
ATTTGACATGAAAAGGAACT+AGG + chr7_2:61146483-61146502 None:intergenic 30.0%
CTTCTAAATATAGAGAATGC+TGG - chr7_2:61146706-61146725 Msa1067000:intron 30.0%
!!! TTTTTTGGAAATAAGCACCA+CGG - chr7_2:61146738-61146757 Msa1067000:intron 30.0%
TTTACAAACTAATGGGAAGA+TGG - chr7_2:61146806-61146825 Msa1067000:CDS 30.0%
!! AGGTGAGTTATTATTTTTCC+AGG - chr7_2:61146872-61146891 Msa1067000:CDS 30.0%
!! AGTTATTATTTTTCCAGGCT+TGG - chr7_2:61146877-61146896 Msa1067000:CDS 30.0%
TTTATTCTTTGCATGCTTTC+AGG - chr7_2:61147216-61147235 Msa1067000:CDS 30.0%
TTATTCTTTGCATGCTTTCA+GGG - chr7_2:61147217-61147236 Msa1067000:CDS 30.0%
CTATACAATGTCAACTTTAC+AGG - chr7_2:61147282-61147301 Msa1067000:intron 30.0%
AGTTTGACCAAAGAAACAAT+GGG + chr7_2:61147601-61147620 None:intergenic 30.0%
!! CTTTGGTTCATGTTTTATAC+TGG - chr7_2:61147628-61147647 Msa1067000:intron 30.0%
TTTGAATAATCATCACCTTG+AGG + chr7_2:61147773-61147792 None:intergenic 30.0%
!!! TTTTTTACTCTTTCTGGCTA+TGG - chr7_2:61147799-61147818 Msa1067000:intron 30.0%
TTGTATAGAATGGTAGTAAC+GGG + chr7_2:61148011-61148030 None:intergenic 30.0%
!!! AGAGTGTAGAGTTTTTTTAG+GGG + chr7_2:61148057-61148076 None:intergenic 30.0%
!!! GAGAGTGTAGAGTTTTTTTA+GGG + chr7_2:61148058-61148077 None:intergenic 30.0%
!!! TGAGAGTGTAGAGTTTTTTT+AGG + chr7_2:61148059-61148078 None:intergenic 30.0%
TAGTTAACATTAGTAGTCCA+AGG + chr7_2:61148269-61148288 None:intergenic 30.0%
!!! GTCCAAACTTTTTTGTTACA+AGG + chr7_2:61148320-61148339 None:intergenic 30.0%
ACTCTGTTGATATACTTTAC+AGG - chr7_2:61148387-61148406 Msa1067000:intron 30.0%
CTGTAATCCAAACATAATCA+AGG + chr7_2:61148529-61148548 None:intergenic 30.0%
!! ATAGCTTTGAATTTGATGGA+TGG - chr7_2:61148599-61148618 Msa1067000:intron 30.0%
!! TAGCTTTGAATTTGATGGAT+GGG - chr7_2:61148600-61148619 Msa1067000:intron 30.0%
TATATAGTCCCATTTACACT+TGG - chr7_2:61148644-61148663 Msa1067000:intron 30.0%
AAGAAACATGGATAAGACTT+GGG + chr7_2:61148941-61148960 None:intergenic 30.0%
TAAGAAACATGGATAAGACT+TGG + chr7_2:61148942-61148961 None:intergenic 30.0%
GCCATATGAAGCATATTATT+AGG - chr7_2:61148976-61148995 Msa1067000:intron 30.0%
AAACATTCTTGTGTATATGC+AGG - chr7_2:61149028-61149047 Msa1067000:intron 30.0%
! AACTTGAGATTTTATGGACA+AGG - chr7_2:61149083-61149102 Msa1067000:intron 30.0%
! ACTTGAGATTTTATGGACAA+GGG - chr7_2:61149084-61149103 Msa1067000:intron 30.0%
GGAGACTTATAACAAATCAT+AGG - chr7_2:61149202-61149221 Msa1067000:CDS 30.0%
TTGAGGTGTGAAAAGAAAAG+GGG + chr7_2:61143649-61143668 None:intergenic 35.0%
GTGAGAATCTTGATTGTAGA+TGG + chr7_2:61143676-61143695 None:intergenic 35.0%
AACACAGAGAAGAAGAAGAT+AGG + chr7_2:61143727-61143746 None:intergenic 35.0%
! CTTCTTACTTTCTCTTTTGC+TGG - chr7_2:61143754-61143773 Msa1067000:three_prime_UTR 35.0%
ATGTGACAACAACTTTGTTC+TGG - chr7_2:61143819-61143838 Msa1067000:CDS 35.0%
GCTTGAAATGCTGTTCTTAT+TGG - chr7_2:61143903-61143922 Msa1067000:intron 35.0%
!!! GAAGCTTGTTTTTTGAGCAT+TGG - chr7_2:61144103-61144122 Msa1067000:intron 35.0%
!!! TTTTTTGAGCATTGGATGCT+TGG - chr7_2:61144111-61144130 Msa1067000:intron 35.0%
!! ATTTCCCTGGTTTTTGCAAT+AGG - chr7_2:61144322-61144341 Msa1067000:CDS 35.0%
GACTTGATTCTATCTTGTCA+TGG - chr7_2:61144691-61144710 Msa1067000:intron 35.0%
GCTTGTTCTATAAGCGTTAA+AGG - chr7_2:61144748-61144767 Msa1067000:CDS 35.0%
! GCAATTTTCGTAATCCAAAC+GGG + chr7_2:61144775-61144794 None:intergenic 35.0%
AAGTCAGTTACTCTAGGTTA+AGG + chr7_2:61144940-61144959 None:intergenic 35.0%
ACAGTTAAGTCAGTTACTCT+AGG + chr7_2:61144946-61144965 None:intergenic 35.0%
TCTCTTGCAGCAATGTAAAA+AGG - chr7_2:61145000-61145019 Msa1067000:CDS 35.0%
AAGACTAATCAAGAAGACAG+AGG + chr7_2:61145117-61145136 None:intergenic 35.0%
! AGTTTGAAATGGTGAGAACA+AGG - chr7_2:61145198-61145217 Msa1067000:CDS 35.0%
AATCTCTTAGCTTATGTCTC+AGG - chr7_2:61145281-61145300 Msa1067000:intron 35.0%
!! TCCAATTTCAATTGATGGTG+TGG - chr7_2:61145421-61145440 Msa1067000:CDS 35.0%
TCCACACCATCAATTGAAAT+TGG + chr7_2:61145425-61145444 None:intergenic 35.0%
CGTGAGCTAACAAAATTTCA+AGG + chr7_2:61145707-61145726 None:intergenic 35.0%
TTGTGAAACTACATTGTCCT+CGG + chr7_2:61145750-61145769 None:intergenic 35.0%
ACAATGTAGTTTCACAACCA+AGG - chr7_2:61145753-61145772 Msa1067000:intron 35.0%
TTCTTCAGCTATATTTGCCT+TGG + chr7_2:61145773-61145792 None:intergenic 35.0%
CAGTTTGTGGTTATAGGTTT+CGG - chr7_2:61145925-61145944 Msa1067000:intron 35.0%
!! TTTTGCAGGACTTTTCAAGA+TGG - chr7_2:61146048-61146067 Msa1067000:intron 35.0%
ATGTTTCACTTCTTGTGTGA+AGG - chr7_2:61146175-61146194 Msa1067000:CDS 35.0%
! TTTTTATGGCTTATGGCTGT+TGG - chr7_2:61146377-61146396 Msa1067000:intron 35.0%
TGAGCAAGAGAAGCTATTAA+AGG - chr7_2:61146454-61146473 Msa1067000:intron 35.0%
TTAAAGGAATCTTCTGTGAG+AGG + chr7_2:61146558-61146577 None:intergenic 35.0%
! GCTTATTTCCAAAAAAGCAC+TGG + chr7_2:61146734-61146753 None:intergenic 35.0%
AAGATGGTTCATTGATGTTC+TGG - chr7_2:61146822-61146841 Msa1067000:CDS 35.0%
TCTTGACATTATGTTAGAGC+AGG - chr7_2:61146944-61146963 Msa1067000:intron 35.0%
! AACGCTAGGATACCAAATTT+TGG + chr7_2:61146975-61146994 None:intergenic 35.0%
!! TATGTGAAAGTACCCTTCTT+CGG - chr7_2:61147444-61147463 Msa1067000:CDS 35.0%
AAGAATATCTTGACCAATCC+AGG + chr7_2:61147556-61147575 None:intergenic 35.0%
! TTGCTTTCCCATTGTTTCTT+TGG - chr7_2:61147591-61147610 Msa1067000:intron 35.0%
GAGTTTGACCAAAGAAACAA+TGG + chr7_2:61147602-61147621 None:intergenic 35.0%
! TGGTCAAACTCCTTTTTCTT+TGG - chr7_2:61147611-61147630 Msa1067000:intron 35.0%
! GGGTATCGCTTTGATAATTA+CGG - chr7_2:61147722-61147741 Msa1067000:intron 35.0%
ATAATCATCACCTTGAGGTT+TGG + chr7_2:61147768-61147787 None:intergenic 35.0%
CTTCCTATATGACATCTTCT+GGG - chr7_2:61147919-61147938 Msa1067000:intron 35.0%
GTAACAAAAAAGTTTGGACC+AGG - chr7_2:61148321-61148340 Msa1067000:intron 35.0%
CTATAGCATACCTAAACCAT+AGG + chr7_2:61148471-61148490 None:intergenic 35.0%
ACCTGTAGATCAAAATCCAA+GGG + chr7_2:61148564-61148583 None:intergenic 35.0%
TCAAAGCTATGTATGTGACA+AGG + chr7_2:61148589-61148608 None:intergenic 35.0%
AATAGATAACACTGGTGTAG+TGG + chr7_2:61148788-61148807 None:intergenic 35.0%
!!! GTTTAGTGGTTTTAGTGTAG+CGG + chr7_2:61148867-61148886 None:intergenic 35.0%
GTGGGATATAGTAAGAAACA+TGG + chr7_2:61148953-61148972 None:intergenic 35.0%
TATGCTTCATATGGCATAGT+GGG + chr7_2:61148971-61148990 None:intergenic 35.0%
ATATGCTTCATATGGCATAG+TGG + chr7_2:61148972-61148991 None:intergenic 35.0%
CTTCTTTCCCAATGACAAAA+AGG + chr7_2:61149056-61149075 None:intergenic 35.0%
! CTTGAGATTTTATGGACAAG+GGG - chr7_2:61149085-61149104 Msa1067000:intron 35.0%
! TTGAGATTTTATGGACAAGG+GGG - chr7_2:61149086-61149105 Msa1067000:intron 35.0%
AAACCTACAATACTATTCCG+CGG + chr7_2:61149173-61149192 None:intergenic 35.0%
CCAAAGTACAAACAGATTCA+TGG + chr7_2:61149364-61149383 None:intergenic 35.0%
CCATGAATCTGTTTGTACTT+TGG - chr7_2:61149361-61149380 Msa1067000:five_prime_UTR 35.0%
AAGAAGAGGAAATCGTGAAG+GGG + chr7_2:61143555-61143574 None:intergenic 40.0%
GAAGAAGAGGAAATCGTGAA+GGG + chr7_2:61143556-61143575 None:intergenic 40.0%
TGGTAGTACAAAGGAAGAAG+AGG + chr7_2:61143569-61143588 None:intergenic 40.0%
AGATGAAGGTGGTAGTACAA+AGG + chr7_2:61143578-61143597 None:intergenic 40.0%
CTTCTTCTTCTCTGTGTTCA+TGG - chr7_2:61143729-61143748 Msa1067000:three_prime_UTR 40.0%
AGTATTGCTCCTAAGAAACC+TGG - chr7_2:61143796-61143815 Msa1067000:exon 40.0%
TTGTCACATCCAGGTTTCTT+AGG + chr7_2:61143808-61143827 None:intergenic 40.0%
ACAAAGTTGTTGTCACATCC+AGG + chr7_2:61143817-61143836 None:intergenic 40.0%
!! TCTCAACTGTAGCTGTTTTC+TGG - chr7_2:61144458-61144477 Msa1067000:intron 40.0%
!! GGTCTGTTTGGATTAGCTTA+TGG - chr7_2:61144587-61144606 Msa1067000:intron 40.0%
AAACAACTTAAGGGTCCGTT+TGG + chr7_2:61144905-61144924 None:intergenic 40.0%
AAATGGTGAGAACAAGGTGA+TGG - chr7_2:61145204-61145223 Msa1067000:CDS 40.0%
!! CTATGAGTATTGATAGGTCG+TGG - chr7_2:61145340-61145359 Msa1067000:intron 40.0%
!!! GTTTTTTCGGCAGATTTGAC+CGG - chr7_2:61145375-61145394 Msa1067000:intron 40.0%
!! TGACCGGTTTTTCTTTCGAT+AGG - chr7_2:61145391-61145410 Msa1067000:CDS 40.0%
!! TCAATTGATGGTGTGGAAAG+CGG - chr7_2:61145428-61145447 Msa1067000:CDS 40.0%
TGCAAGATTTGGACCTACAT+TGG - chr7_2:61145469-61145488 Msa1067000:CDS 40.0%
!! TTAGGTTTGCTACAACAGTC+AGG + chr7_2:61145545-61145564 None:intergenic 40.0%
GCAAATATAGCTGAAGAAGC+TGG - chr7_2:61145775-61145794 Msa1067000:intron 40.0%
CAAGAAGTGAAACATACCTG+TGG + chr7_2:61146170-61146189 None:intergenic 40.0%
GCAAGACACAAAACCAGATT+AGG + chr7_2:61146276-61146295 None:intergenic 40.0%
TCATCTGAATCATCCTGCAA+TGG + chr7_2:61146685-61146704 None:intergenic 40.0%
ATGGTTCATTGATGTTCTGG+TGG - chr7_2:61146825-61146844 Msa1067000:CDS 40.0%
!! CTGGTGGTTCTGTTTTGTAT+TGG - chr7_2:61146841-61146860 Msa1067000:CDS 40.0%
!! GTGGTTCTGTTTTGTATTGG+TGG - chr7_2:61146844-61146863 Msa1067000:CDS 40.0%
!!! GTTTTGTATTGGTGGTGTTG+AGG - chr7_2:61146852-61146871 Msa1067000:CDS 40.0%
TAATCATCAAGAACCAAGCC+TGG + chr7_2:61146893-61146912 None:intergenic 40.0%
AACTTCAAATCCGGACAGAA+AGG + chr7_2:61147016-61147035 None:intergenic 40.0%
!! GACTTTAGAGCCATTTGCTA+TGG + chr7_2:61147161-61147180 None:intergenic 40.0%
!! AGCAAATGGCTCTAAAGTCA+TGG - chr7_2:61147162-61147181 Msa1067000:CDS 40.0%
!! GCAAATGGCTCTAAAGTCAT+GGG - chr7_2:61147163-61147182 Msa1067000:CDS 40.0%
TGTCCAAATACCAAACCTCA+AGG - chr7_2:61147755-61147774 Msa1067000:intron 40.0%
! TCACCTTGAGGTTTGGTATT+TGG + chr7_2:61147761-61147780 None:intergenic 40.0%
!! ACTCTTTCTGGCTATGGATA+TGG - chr7_2:61147805-61147824 Msa1067000:intron 40.0%
CCAGAAGATGTCATATAGGA+AGG + chr7_2:61147921-61147940 None:intergenic 40.0%
CCTTCCTATATGACATCTTC+TGG - chr7_2:61147918-61147937 Msa1067000:intron 40.0%
ACACCCAGAAGATGTCATAT+AGG + chr7_2:61147925-61147944 None:intergenic 40.0%
CTACACTCTCACTTCTTTAC+AGG - chr7_2:61148068-61148087 Msa1067000:intron 40.0%
! TTCGGGGACATAATTTTACC+AGG - chr7_2:61148186-61148205 Msa1067000:intron 40.0%
! TCGGGGACATAATTTTACCA+GGG - chr7_2:61148187-61148206 Msa1067000:intron 40.0%
GAAAATGCTACTAAAAGCCC+TGG + chr7_2:61148207-61148226 None:intergenic 40.0%
CACATGGATCACTTATTCCT+TGG - chr7_2:61148249-61148268 Msa1067000:intron 40.0%
CAAGGATTTGATGTGCACTA+CGG + chr7_2:61148302-61148321 None:intergenic 40.0%
ACAGTTTAAATCCTGTCCCT+TGG - chr7_2:61148545-61148564 Msa1067000:intron 40.0%
TAGATCAAAATCCAAGGGAC+AGG + chr7_2:61148559-61148578 None:intergenic 40.0%
!! TCCCTTGGATTTTGATCTAC+AGG - chr7_2:61148560-61148579 Msa1067000:intron 40.0%
GACCTGTAGATCAAAATCCA+AGG + chr7_2:61148565-61148584 None:intergenic 40.0%
! TTGAATTTGATGGATGGGCA+TGG - chr7_2:61148605-61148624 Msa1067000:intron 40.0%
! CTTTTTGCGTAGTCAAACAG+CGG + chr7_2:61148901-61148920 None:intergenic 40.0%
GACTTGGGATAAGTTTCACA+AGG + chr7_2:61148926-61148945 None:intergenic 40.0%
! TGCAGGAACCTTTTTGTCAT+TGG - chr7_2:61149045-61149064 Msa1067000:intron 40.0%
! GCAGGAACCTTTTTGTCATT+GGG - chr7_2:61149046-61149065 Msa1067000:intron 40.0%
TTGTCATTGGGAAAGAAGAG+AGG - chr7_2:61149058-61149077 Msa1067000:intron 40.0%
! GAGGCGAACTTGAGATTTTA+TGG - chr7_2:61149077-61149096 Msa1067000:intron 40.0%
GATGATCCTCTTTGATGTGA+GGG + chr7_2:61149129-61149148 None:intergenic 40.0%
TGATGATCCTCTTTGATGTG+AGG + chr7_2:61149130-61149149 None:intergenic 40.0%
AACCTACAATACTATTCCGC+GGG + chr7_2:61149172-61149191 None:intergenic 40.0%
CAGCCTAACGATATTGTACA+AGG - chr7_2:61149275-61149294 Msa1067000:five_prime_UTR 40.0%
GTGCCTTGTACAATATCGTT+AGG + chr7_2:61149281-61149300 None:intergenic 40.0%
CCAACATCTAACAGTCAAGA+GGG + chr7_2:61149336-61149355 None:intergenic 40.0%
TCCAACATCTAACAGTCAAG+AGG + chr7_2:61149337-61149356 None:intergenic 40.0%
TCTTGACTGTTAGATGTTGG+AGG - chr7_2:61149336-61149355 Msa1067000:five_prime_UTR 40.0%
GGAAGAAGAGGAAATCGTGA+AGG + chr7_2:61143557-61143576 None:intergenic 45.0%
GGTGTGAAAAGAAAAGGGGT+TGG + chr7_2:61143645-61143664 None:intergenic 45.0%
CTCTAGGTTAAGGTCGTCTT+TGG + chr7_2:61144930-61144949 None:intergenic 45.0%
GTGCAGACACAGAATACACT+AGG - chr7_2:61145053-61145072 Msa1067000:intron 45.0%
! GTTTGCTACAACAGTCAGGA+GGG + chr7_2:61145541-61145560 None:intergenic 45.0%
ATTATGCTTTCCTTGGCCAC+AGG - chr7_2:61146218-61146237 Msa1067000:CDS 45.0%
TTATGCTTTCCTTGGCCACA+GGG - chr7_2:61146219-61146238 Msa1067000:CDS 45.0%
TTTAAATCTCCCTGTGGCCA+AGG + chr7_2:61146231-61146250 None:intergenic 45.0%
! CCAGTAAGAAGCACAGAGAA+TGG + chr7_2:61146405-61146424 None:intergenic 45.0%
CCATTCTCTGTGCTTCTTAC+TGG - chr7_2:61146402-61146421 Msa1067000:intron 45.0%
TTGCTCAATAACACCCTCTC+TGG + chr7_2:61146441-61146460 None:intergenic 45.0%
!!! TGCTGGTTCCAGTGCTTTTT+TGG - chr7_2:61146723-61146742 Msa1067000:intron 45.0%
GAGCAGGCTACACCAAAATT+TGG - chr7_2:61146960-61146979 Msa1067000:intron 45.0%
TTGGTATCCTAGCGTTCAGA+CGG - chr7_2:61146979-61146998 Msa1067000:intron 45.0%
CACATTAGTGCCTTTCTGTC+CGG - chr7_2:61147003-61147022 Msa1067000:intron 45.0%
GTCCTGTCATCCATAGCAAA+TGG - chr7_2:61147148-61147167 Msa1067000:CDS 45.0%
!! AGCCATTTGCTATGGATGAC+AGG + chr7_2:61147153-61147172 None:intergenic 45.0%
! TGTGAAACAGCACCGAAGAA+GGG + chr7_2:61147459-61147478 None:intergenic 45.0%
! ATGTGAAACAGCACCGAAGA+AGG + chr7_2:61147460-61147479 None:intergenic 45.0%
ACAGCGAATGCTATGCAGAA+GGG + chr7_2:61147501-61147520 None:intergenic 45.0%
CATAGCATTCGCTGTGGTTT+GGG - chr7_2:61147506-61147525 Msa1067000:CDS 45.0%
ATAGCATTCGCTGTGGTTTG+GGG - chr7_2:61147507-61147526 Msa1067000:CDS 45.0%
CAATCCAGGCATACGATACA+CGG + chr7_2:61147542-61147561 None:intergenic 45.0%
CCACTATCATCACACTCTCA+TGG + chr7_2:61147967-61147986 None:intergenic 45.0%
! CCATGAGAGTGTGATGATAG+TGG - chr7_2:61147964-61147983 Msa1067000:intron 45.0%
ACTTCTTTACAGGTAGCTCG+CGG - chr7_2:61148078-61148097 Msa1067000:intron 45.0%
GGTGATAAGAGTGGAGAAGA+TGG - chr7_2:61148099-61148118 Msa1067000:intron 45.0%
TACCGCGTTTATTCGATCCT+TGG - chr7_2:61148142-61148161 Msa1067000:intron 45.0%
ACCGCGTTTATTCGATCCTT+GGG - chr7_2:61148143-61148162 Msa1067000:intron 45.0%
!! GGTTACAGTGTCATCGGTTT+CGG - chr7_2:61148168-61148187 Msa1067000:intron 45.0%
!! GTTACAGTGTCATCGGTTTC+GGG - chr7_2:61148169-61148188 Msa1067000:intron 45.0%
!! TTACAGTGTCATCGGTTTCG+GGG - chr7_2:61148170-61148189 Msa1067000:intron 45.0%
!! ACAAGAAGTATCCTGCTCGA+AGG + chr7_2:61148436-61148455 None:intergenic 45.0%
TTCGAGCAGGATACTTCTTG+TGG - chr7_2:61148435-61148454 Msa1067000:intron 45.0%
ACGATGAGTGCCTATGGTTT+AGG - chr7_2:61148458-61148477 Msa1067000:intron 45.0%
GGGACTATATACAGCAAAGC+TGG + chr7_2:61148635-61148654 None:intergenic 45.0%
!! ATGTGAGGGCAAGGCATTTT+TGG + chr7_2:61149115-61149134 None:intergenic 45.0%
CCCTCTTGACTGTTAGATGT+TGG - chr7_2:61149333-61149352 Msa1067000:five_prime_UTR 45.0%
!!! AATTTATTTTTATATTTTTG+TGG - chr7_2:61144002-61144021 Msa1067000:intron 5.0%
!!! TTTATTAATATTTTGTAATA+TGG - chr7_2:61145677-61145696 Msa1067000:intron 5.0%
TAAGCGTTAAAGGGCCCGTT+TGG - chr7_2:61144758-61144777 Msa1067000:CDS 50.0%
!! GTCGGTGTTGGTGCAAGATT+TGG - chr7_2:61145458-61145477 Msa1067000:CDS 50.0%
CGGCAATGGCAACTCTAGTA+TGG + chr7_2:61145517-61145536 None:intergenic 50.0%
!! GGTTTGCTACAACAGTCAGG+AGG + chr7_2:61145542-61145561 None:intergenic 50.0%
!! GAGATCATTTTGGTGCACCG+AGG - chr7_2:61145730-61145749 Msa1067000:intron 50.0%
ACTTCTGCAACATCGACCTG+TGG + chr7_2:61146356-61146375 None:intergenic 50.0%
TCTTCTGTGAGAGGACTGTG+AGG + chr7_2:61146549-61146568 None:intergenic 50.0%
!! AACGAATGAAAGTGCTGCCG+TGG + chr7_2:61146758-61146777 None:intergenic 50.0%
AATGTGTCCGTCTGAACGCT+AGG + chr7_2:61146989-61147008 None:intergenic 50.0%
! GGGACTGCAAACTTGCTTAG+TGG - chr7_2:61147237-61147256 Msa1067000:intron 50.0%
AGCGAATGCTATGCAGAAGG+GGG + chr7_2:61147499-61147518 None:intergenic 50.0%
CAGCGAATGCTATGCAGAAG+GGG + chr7_2:61147500-61147519 None:intergenic 50.0%
CACAGCGAATGCTATGCAGA+AGG + chr7_2:61147502-61147521 None:intergenic 50.0%
CTTCTGCATAGCATTCGCTG+TGG - chr7_2:61147500-61147519 Msa1067000:CDS 50.0%
GCATAGCATTCGCTGTGGTT+TGG - chr7_2:61147505-61147524 Msa1067000:CDS 50.0%
CGTGTATCGTATGCCTGGAT+TGG - chr7_2:61147540-61147559 Msa1067000:intron 50.0%
CCCCAAGGATCGAATAAACG+CGG + chr7_2:61148147-61148166 None:intergenic 50.0%
CCGCGTTTATTCGATCCTTG+GGG - chr7_2:61148144-61148163 Msa1067000:intron 50.0%
CGTTTATTCGATCCTTGGGG+TGG - chr7_2:61148147-61148166 Msa1067000:intron 50.0%
ATGACACTGTAACCACCCCA+AGG + chr7_2:61148162-61148181 None:intergenic 50.0%
TGGGGTGGTTACAGTGTCAT+CGG - chr7_2:61148162-61148181 Msa1067000:intron 50.0%
! GGTATGATTGGCTAGCGAAG+AGG - chr7_2:61148408-61148427 Msa1067000:intron 50.0%
TTGTGGACGATGAGTGCCTA+TGG - chr7_2:61148452-61148471 Msa1067000:intron 50.0%
CGGCTATCACAGTGGTTTAG+TGG + chr7_2:61148881-61148900 None:intergenic 50.0%
TCAAACAGCGGCTATCACAG+TGG + chr7_2:61148889-61148908 None:intergenic 50.0%
TCCTCTTTGATGTGAGGGCA+AGG + chr7_2:61149124-61149143 None:intergenic 50.0%
AGTAGACGAGTAATCTCCCG+CGG - chr7_2:61149153-61149172 Msa1067000:CDS 50.0%
CTCCCGCGGAATAGTATTGT+AGG - chr7_2:61149167-61149186 Msa1067000:CDS 50.0%
GTGGAAAGCGGCGAGTATGT+CGG - chr7_2:61145440-61145459 Msa1067000:CDS 55.0%
GCTACAACAGTCAGGAGGGT+CGG + chr7_2:61145537-61145556 None:intergenic 55.0%
! GCTCACGGGCGAGATCATTT+TGG - chr7_2:61145720-61145739 Msa1067000:intron 55.0%
ACCTGCTGTCATGCTTCCAC+TGG - chr7_2:61146105-61146124 Msa1067000:CDS 55.0%
! TCCAGTGGAAGCATGACAGC+AGG + chr7_2:61146109-61146128 None:intergenic 55.0%
GTCATGCTTCCACTGGATGC+CGG - chr7_2:61146112-61146131 Msa1067000:CDS 55.0%
ATACTCTCCACGACGTCCAC+AGG - chr7_2:61146337-61146356 Msa1067000:intron 55.0%
! GTGCTTCTTACTGGTCTGCC+TGG - chr7_2:61146411-61146430 Msa1067000:intron 55.0%
AACGCCGTGTATCGTATGCC+TGG - chr7_2:61147535-61147554 Msa1067000:intron 55.0%
GTAGCTCGCGGTGATAAGAG+TGG - chr7_2:61148090-61148109 Msa1067000:intron 55.0%
GCGGTATCTTGAGCAGCATG+GGG + chr7_2:61148128-61148147 None:intergenic 55.0%
CGCGGTATCTTGAGCAGCAT+GGG + chr7_2:61148129-61148148 None:intergenic 55.0%
ACGCGGTATCTTGAGCAGCA+TGG + chr7_2:61148130-61148149 None:intergenic 55.0%
GCCTTGCCCTCACATCAAAG+AGG - chr7_2:61149120-61149139 Msa1067000:intron 55.0%
GCGGGAGATTACTCGTCTAC+TGG + chr7_2:61149154-61149173 None:intergenic 55.0%
AGCGGCGAGTATGTCGGTGT+TGG - chr7_2:61145446-61145465 Msa1067000:CDS 60.0%
ACAGTCAGGAGGGTCGGCAA+TGG + chr7_2:61145531-61145550 None:intergenic 60.0%
AAGGCTTCACCGGCATCCAG+TGG + chr7_2:61146124-61146143 None:intergenic 60.0%
ACATCGACCTGTGGACGTCG+TGG + chr7_2:61146347-61146366 None:intergenic 60.0%
TCTGCCTGGACTGCCAGAGA+GGG - chr7_2:61146425-61146444 Msa1067000:intron 60.0%
AACACCCTCTCTGGCAGTCC+AGG + chr7_2:61146432-61146451 None:intergenic 60.0%
GCGAAGAGGAACCTTCGAGC+AGG - chr7_2:61148422-61148441 Msa1067000:intron 60.0%
GTCTGCCTGGACTGCCAGAG+AGG - chr7_2:61146424-61146443 Msa1067000:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 61143509 61149455 61143509 ID=Msa1067000;Name=Msa1067000
chr7_2 mRNA 61143509 61149455 61143509 ID=Msa1067000-mRNA-1;Parent=Msa1067000;Name=Msa1067000-mRNA-1;_AED=0.13;_eAED=0.13;_QI=200|1|1|1|1|1|14|290|537
chr7_2 exon 61143509 61143914 61143509 ID=Msa1067000-mRNA-1:exon:12279;Parent=Msa1067000-mRNA-1
chr7_2 exon 61144299 61144382 61144299 ID=Msa1067000-mRNA-1:exon:12278;Parent=Msa1067000-mRNA-1
chr7_2 exon 61144485 61144555 61144485 ID=Msa1067000-mRNA-1:exon:12277;Parent=Msa1067000-mRNA-1
chr7_2 exon 61144732 61144874 61144732 ID=Msa1067000-mRNA-1:exon:12276;Parent=Msa1067000-mRNA-1
chr7_2 exon 61144979 61145071 61144979 ID=Msa1067000-mRNA-1:exon:12275;Parent=Msa1067000-mRNA-1
chr7_2 exon 61145188 61145241 61145188 ID=Msa1067000-mRNA-1:exon:12274;Parent=Msa1067000-mRNA-1
chr7_2 exon 61145389 61145551 61145389 ID=Msa1067000-mRNA-1:exon:12273;Parent=Msa1067000-mRNA-1
chr7_2 exon 61145692 61145726 61145692 ID=Msa1067000-mRNA-1:exon:12272;Parent=Msa1067000-mRNA-1
chr7_2 exon 61146091 61146273 61146091 ID=Msa1067000-mRNA-1:exon:12271;Parent=Msa1067000-mRNA-1
chr7_2 exon 61146489 61146640 61146489 ID=Msa1067000-mRNA-1:exon:12270;Parent=Msa1067000-mRNA-1
chr7_2 exon 61146792 61146908 61146792 ID=Msa1067000-mRNA-1:exon:12269;Parent=Msa1067000-mRNA-1
chr7_2 exon 61147132 61147243 61147132 ID=Msa1067000-mRNA-1:exon:12268;Parent=Msa1067000-mRNA-1
chr7_2 exon 61147393 61147551 61147393 ID=Msa1067000-mRNA-1:exon:12267;Parent=Msa1067000-mRNA-1
chr7_2 exon 61149124 61149455 61149124 ID=Msa1067000-mRNA-1:exon:12266;Parent=Msa1067000-mRNA-1
chr7_2 five_prime_UTR 61149256 61149455 61149256 ID=Msa1067000-mRNA-1:five_prime_utr;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61149124 61149255 61149124 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61147393 61147551 61147393 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61147132 61147243 61147132 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61146792 61146908 61146792 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61146489 61146640 61146489 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61146091 61146273 61146091 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61145692 61145726 61145692 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61145389 61145551 61145389 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61145188 61145241 61145188 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61144979 61145071 61144979 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61144732 61144874 61144732 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61144485 61144555 61144485 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61144299 61144382 61144299 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 CDS 61143799 61143914 61143799 ID=Msa1067000-mRNA-1:cds;Parent=Msa1067000-mRNA-1
chr7_2 three_prime_UTR 61143509 61143798 61143509 ID=Msa1067000-mRNA-1:three_prime_utr;Parent=Msa1067000-mRNA-1
Gene Sequence

>Msa1067000

ATGCCTTCTTTTACACCTATCTTCTTCTTCTCTGTGTTCATGGTTCTTCTTACTTTCTCTTTTGCTGGTGATATAGTTCATCATGATAGTATTGCTCCTAAGAAACCTGGATGTGACAACAACTTTGTTCTGGTTAAAGTTCCAATTTCAATTGATGGTGTGGAAAGCGGCGAGTATGTCGGTGTTGGTGCAAGATTTGGACCTACATTGGAATCAAAAGAAAAACGTGCTAACCATACTAGAGTTGCCATTGCCGACCCTCCTGACTGTTGTAGCAAACCTAAGAATAAGCTCACGGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTGATTATAAATAACGCTAAAGGACTTTTCAAGATGGTTTGTGAAAATGAAACCGATATTGATATTGGAATACCTGCTGTCATGCTTCCACTGGATGCCGGTGAAGCCTTGAAAAAATATATACAAAACAAGTCCACAGTGTCTGTGCAGTTATACTCTCCACGACGTCCACAGGTCGATGTTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCCAGAGAGGGTGTTATTGAGCAAGAGAAGCTATTAAAGGATGATTCAGATGAGCTTCTAAATATAGAGAATGCTGGTTCCAGTGCTTTTTTGGAAATAAGCACCACGGCAGCACTTTCATTCGTTGTGATTGCTTCTTGTTTCTTGTTTATGCTTTACAAACTAATGGGAAGATGGTTCATTGATGTTCTGGTGGTTCTGTTTTGTATTGGTGGTGTTGAGGGACTGCAAACTTGCTTAGTGGCTCTTTTATCACATTTCAGATGGTCTCAACATGCTGCACAAACATATGTGAAAGTACCCTTCTTCGGTGCTGTTTCACATCTCACTCTTGCTGTCACCCCCTTCTGCATAGCATTCGCTGTGGTTTGGGGAGTTGAACGCCGTGTATCGTATGCCTGGATTGGTCAAGATATTCTTGGTATCGCTTTGATAATTACGGTTCTTCAGATTGTCCAAATACCAAACCTCAAGGTTGGAACTGTTCTTCTCAGCTGCGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAACTGATTTTCCATGAGAGTGTGATGATAGTGGTAGCTCGCGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTGCTCAAGATACCGCGTTTATTCGATCCTTGGGGTGGTTACAGTGTCATCGGTTTCGGGGACATAATTTTACCAGGGCTTTTAGTAGCATTTTCGTTAAGGTATGATTGGCTAGCGAAGAGGAACCTTCGAGCAGGATACTTCTTGTGGACGATGAGTGCCTATGGTTTAGGTCTCCTTGTCACATACATAGCTTTGAATTTGATGGATGGGCATGGTCAACCAGCTTTGCTGTATATAGTCCCATTTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGCGAACTTGAGATTTTATGGACAAGGGGGATGCCAAAAATGCCTTGCCCTCACATCAAAGAGGATCATCAACCAGTAGACGAGTAA

Protein sequence

>Msa1067000

MPSFTPIFFFSVFMVLLTFSFAGDIVHHDSIAPKKPGCDNNFVLVKVPISIDGVESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINNAKGLFKMVCENETDIDIGIPAVMLPLDAGEALKKYIQNKSTVSVQLYSPRRPQVDVAEVFLWLMAVGTILCASYWSAWTAREGVIEQEKLLKDDSDELLNIENAGSSAFLEISTTAALSFVVIASCFLFMLYKLMGRWFIDVLVVLFCIGGVEGLQTCLVALLSHFRWSQHAAQTYVKVPFFGAVSHLTLAVTPFCIAFAVVWGVERRVSYAWIGQDILGIALIITVLQIVQIPNLKVGTVLLSCAFLYDIFWVFVSKLIFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLLVAFSLRYDWLAKRNLRAGYFLWTMSAYGLGLLVTYIALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELEILWTRGMPKMPCPHIKEDHQPVDE*