Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895400 | AES76107.2 | 79.330 | 358 | 47 | 3 | 27 | 383 | 70 | 401 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895400 | sp|Q84JT7|ARID1_ARATH | 31.224 | 237 | 128 | 5 | 122 | 347 | 244 | 456 | 1.18e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895400 | G7KQC7 | 79.330 | 358 | 47 | 3 | 27 | 383 | 70 | 401 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017240 | Msa0895400 | 0.803449 | 3.467812e-49 | -8.615850e-47 |
| Msa0612960 | Msa0895400 | 0.822825 | 1.925379e-53 | -8.615850e-47 |
| Msa0188830 | Msa0895400 | 0.814043 | 1.883741e-51 | -8.615850e-47 |
| Msa0479970 | Msa0895400 | 0.805235 | 1.472298e-49 | -8.615850e-47 |
| Msa0558230 | Msa0895400 | 0.819930 | 8.966135e-53 | -8.615850e-47 |
| Msa0895400 | Msa1372760 | 0.807276 | 5.469270e-50 | -8.615850e-47 |
| Msa0895400 | Msa1392260 | 0.820068 | 8.338843e-53 | -8.615850e-47 |
| Msa0895400 | Msa1429900 | 0.812773 | 3.581087e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895400 | MtrunA17_Chr6g0479271 | 86.269 | 335 | 38 | 2 | 50 | 383 | 1 | 328 | 0.0 | 540 |
| Msa0895400 | MtrunA17_Chr8g0387181 | 56.620 | 355 | 84 | 8 | 56 | 349 | 175 | 520 | 8.11e-109 | 332 |
| Msa0895400 | MtrunA17_Chr8g0387181 | 68.293 | 41 | 13 | 0 | 343 | 383 | 588 | 628 | 7.90e-12 | 67.0 |
| Msa0895400 | MtrunA17_Chr8g0387141 | 58.485 | 330 | 78 | 9 | 56 | 349 | 182 | 488 | 9.22e-107 | 326 |
| Msa0895400 | MtrunA17_Chr8g0387141 | 70.732 | 41 | 12 | 0 | 343 | 383 | 556 | 596 | 1.19e-11 | 66.2 |
| Msa0895400 | MtrunA17_Chr5g0420461 | 80.402 | 199 | 21 | 1 | 185 | 383 | 17 | 197 | 3.27e-100 | 295 |
| Msa0895400 | MtrunA17_Chr1g0186281 | 55.660 | 318 | 108 | 7 | 56 | 356 | 183 | 484 | 1.18e-96 | 299 |
| Msa0895400 | MtrunA17_Chr1g0186191 | 54.790 | 334 | 98 | 8 | 56 | 356 | 181 | 494 | 2.76e-96 | 298 |
| Msa0895400 | MtrunA17_Chr1g0186261 | 54.375 | 320 | 111 | 8 | 56 | 356 | 184 | 487 | 2.61e-94 | 293 |
| Msa0895400 | MtrunA17_Chr8g0387161 | 56.303 | 238 | 36 | 6 | 131 | 349 | 1 | 189 | 2.14e-72 | 228 |
| Msa0895400 | MtrunA17_Chr8g0387161 | 75.676 | 37 | 9 | 0 | 347 | 383 | 261 | 297 | 4.14e-11 | 63.5 |
| Msa0895400 | MtrunA17_Chr7g0248041 | 35.081 | 248 | 139 | 8 | 117 | 350 | 244 | 483 | 2.92e-27 | 113 |
| Msa0895400 | MtrunA17_Chr8g0348691 | 37.714 | 175 | 91 | 6 | 192 | 350 | 1 | 173 | 4.14e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895400 | AT2G46040.3 | 31.224 | 237 | 128 | 5 | 122 | 347 | 244 | 456 | 1.20e-26 | 112 |
| Msa0895400 | AT2G46040.1 | 31.224 | 237 | 128 | 5 | 122 | 347 | 244 | 456 | 1.20e-26 | 112 |
| Msa0895400 | AT2G46040.2 | 31.224 | 237 | 128 | 5 | 122 | 347 | 258 | 470 | 1.38e-26 | 111 |
| Msa0895400 | AT4G11400.2 | 29.119 | 261 | 143 | 8 | 124 | 349 | 218 | 471 | 8.03e-24 | 103 |
| Msa0895400 | AT4G11400.1 | 29.119 | 261 | 143 | 8 | 124 | 349 | 218 | 471 | 8.03e-24 | 103 |
| Msa0895400 | AT5G04110.1 | 33.083 | 133 | 77 | 4 | 240 | 360 | 344 | 476 | 7.16e-12 | 67.4 |
| Msa0895400 | AT5G04110.3 | 33.083 | 133 | 77 | 4 | 240 | 360 | 344 | 476 | 7.16e-12 | 67.4 |
| Msa0895400 | AT5G04110.4 | 33.083 | 133 | 77 | 4 | 240 | 360 | 344 | 476 | 7.51e-12 | 67.0 |
| Msa0895400 | AT5G04110.2 | 33.083 | 133 | 77 | 4 | 240 | 360 | 345 | 477 | 7.57e-12 | 67.0 |
Find 75 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTCTCGCAAACGTAAA+AGG | 0.167837 | 6_1:-83259752 | Msa0895400:CDS |
| CAAGAGTGATGGTAATTTAT+TGG | 0.238366 | 6_1:-83259913 | Msa0895400:CDS |
| TGCATTTCACTTTCTGTTGC+AGG | 0.241637 | 6_1:-83258554 | Msa0895400:CDS |
| TACCATCACTGTTAAAATAT+TGG | 0.251275 | 6_1:+83259856 | None:intergenic |
| CCTTTGGGGATTTGACAAAA+TGG | 0.297533 | 6_1:-83258201 | Msa0895400:CDS |
| GAAGAAACTGAAGCTTGAAT+TGG | 0.300868 | 6_1:-83258237 | Msa0895400:CDS |
| TTCCCTTGATCACCTTGATT+TGG | 0.304499 | 6_1:-83259943 | Msa0895400:CDS |
| ACAAGCTCTGTTTCTGTAGT+AGG | 0.314354 | 6_1:+83258341 | None:intergenic |
| GAAGTTAAGTTTGGATCATT+TGG | 0.345699 | 6_1:-83258173 | Msa0895400:CDS |
| AATGCTTAGGCACACAAGTA+TGG | 0.365629 | 6_1:-83258382 | Msa0895400:CDS |
| GCATCCATCTGTGGATTTCA+TGG | 0.379025 | 6_1:-83258123 | Msa0895400:CDS |
| CTACAGAAACAGAGCTTGTT+GGG | 0.379440 | 6_1:-83258337 | Msa0895400:CDS |
| ATGGGCGAGGAAGTTAAGTT+TGG | 0.380276 | 6_1:-83258182 | Msa0895400:CDS |
| CGGATGTATTGCGATATTCT+TGG | 0.382035 | 6_1:+83259701 | None:intergenic |
| CATTATCAGAAATGATAAAC+TGG | 0.384420 | 6_1:-83259725 | Msa0895400:CDS |
| GTGGAGGAGGTGGTACTAAC+TGG | 0.394243 | 6_1:+83260379 | None:intergenic |
| TTTAGAGAGTCAAAAGTTCA+TGG | 0.399666 | 6_1:-83259976 | Msa0895400:CDS |
| CTACATCTCAATTTCACTAC+TGG | 0.401770 | 6_1:+83258617 | None:intergenic |
| CTTTGGGGATTTGACAAAAT+GGG | 0.434572 | 6_1:-83258200 | Msa0895400:CDS |
| GATGTCAAATTGCTGCAAAC+AGG | 0.434612 | 6_1:-83258259 | Msa0895400:CDS |
| CTCAGAAGTTTCCACAAAAG+AGG | 0.451365 | 6_1:+83259782 | None:intergenic |
| TGAAAATCATTGAGAATTGA+TGG | 0.453425 | 6_1:+83260354 | None:intergenic |
| AAGAAACTGAAGCTTGAATT+GGG | 0.460548 | 6_1:-83258236 | Msa0895400:CDS |
| TTTGATCCTGAGGAGTATAA+AGG | 0.463612 | 6_1:-83259678 | Msa0895400:CDS |
| AAACTACACCAGTACATTGC+GGG | 0.464290 | 6_1:+83258420 | None:intergenic |
| TAACCAAATCAAGGTGATCA+AGG | 0.469496 | 6_1:+83259940 | None:intergenic |
| GTTTATCATTCACTTGTTTG+TGG | 0.470731 | 6_1:-83257942 | Msa0895400:three_prime_UTR |
| ATTGATGGTGGTGGAGGAGG+TGG | 0.473864 | 6_1:+83260369 | None:intergenic |
| GTGGAACTCCCGCAATGTAC+TGG | 0.474643 | 6_1:-83258428 | Msa0895400:CDS |
| TTCGATGATGACCCACTGTC+TGG | 0.477069 | 6_1:+83259588 | None:intergenic |
| TCATTCTCGCAAACGTAAAA+GGG | 0.477895 | 6_1:-83259751 | Msa0895400:CDS |
| AGAATTGATGGTGGTGGAGG+AGG | 0.483126 | 6_1:+83260366 | None:intergenic |
| ACTACAGAAACAGAGCTTGT+TGG | 0.483186 | 6_1:-83258338 | Msa0895400:CDS |
| TGGCCACCTTTATACTCCTC+AGG | 0.485872 | 6_1:+83259672 | None:intergenic |
| CTACGAGTTCTTCCTCAGAA+TGG | 0.493368 | 6_1:+83258044 | None:intergenic |
| GAGTGTAGCTGCAACGTTCA+AGG | 0.494639 | 6_1:-83258299 | Msa0895400:CDS |
| TTATACTCCTCAGGATCAAA+CGG | 0.517934 | 6_1:+83259681 | None:intergenic |
| GAGAGTGACTCTAAATGCTT+AGG | 0.519975 | 6_1:-83258395 | Msa0895400:CDS |
| GATGCATCCTGCCATGTATG+AGG | 0.522667 | 6_1:-83258642 | Msa0895400:CDS |
| AAGTTTGGATCATTTGGTGA+TGG | 0.523787 | 6_1:-83258167 | Msa0895400:CDS |
| ATAAATTACCATCACTCTTG+TGG | 0.532243 | 6_1:+83259916 | None:intergenic |
| TGAGGAGTATAAAGGTGGCC+AGG | 0.539042 | 6_1:-83259670 | Msa0895400:CDS |
| TTGAGAATTGATGGTGGTGG+AGG | 0.540572 | 6_1:+83260363 | None:intergenic |
| CACTACTGGATCCTCATACA+TGG | 0.542824 | 6_1:+83258631 | None:intergenic |
| TCTTGTGGTTAACCAAATCA+AGG | 0.552757 | 6_1:+83259931 | None:intergenic |
| TGAAATTGAGATGTAGTGAA+AGG | 0.566317 | 6_1:-83258610 | Msa0895400:CDS |
| ATCTTCTTCACCTTCTGTAG+AGG | 0.575919 | 6_1:+83258662 | None:intergenic |
| TTTCCACAAAAGAGGTGGCT+AGG | 0.576249 | 6_1:+83259790 | None:intergenic |
| TTCTGAAACTCCTCTACAGA+AGG | 0.581658 | 6_1:-83258672 | Msa0895400:CDS |
| TTGGTTAACCACAAGAGTGA+TGG | 0.581825 | 6_1:-83259924 | Msa0895400:CDS |
| ACTGGATCCTCATACATGGC+AGG | 0.586396 | 6_1:+83258635 | None:intergenic |
| AACCAAATCAAGGTGATCAA+GGG | 0.588196 | 6_1:+83259941 | None:intergenic |
| AATACATCCGTTTGATCCTG+AGG | 0.597851 | 6_1:-83259688 | Msa0895400:CDS |
| CACTCCATGAAATCCACAGA+TGG | 0.598826 | 6_1:+83258119 | None:intergenic |
| GGGATTTGACAAAATGGGCG+AGG | 0.602480 | 6_1:-83258195 | Msa0895400:CDS |
| AGCATGCAGAACCAGACAGT+GGG | 0.617644 | 6_1:-83259599 | Msa0895400:CDS |
| GTTGCAGGAAATAAACTGCA+CGG | 0.618806 | 6_1:-83258539 | Msa0895400:CDS |
| CAGTGTGGTAAGCCATTCTG+AGG | 0.625655 | 6_1:-83258056 | Msa0895400:three_prime_UTR |
| TGAAAACGATGACCTACAGA+TGG | 0.625658 | 6_1:+83258452 | None:intergenic |
| AGACAGTGGGTCATCATCGA+AGG | 0.626066 | 6_1:-83259586 | Msa0895400:intron |
| CATTTGGTGATGGTTTCGAG+AGG | 0.630151 | 6_1:-83258157 | Msa0895400:CDS |
| AGCTATCAAGCATCCATCTG+TGG | 0.633077 | 6_1:-83258132 | Msa0895400:CDS |
| TCATTGAGAATTGATGGTGG+TGG | 0.644339 | 6_1:+83260360 | None:intergenic |
| AAATCAAAACAACAAATGTG+AGG | 0.650160 | 6_1:-83259883 | Msa0895400:CDS |
| AGAAGTTTCCACAAAAGAGG+TGG | 0.654112 | 6_1:+83259785 | None:intergenic |
| GATCCTGAGGAGTATAAAGG+TGG | 0.663919 | 6_1:-83259675 | Msa0895400:CDS |
| ATTTGGTGATGGTTTCGAGA+GGG | 0.668136 | 6_1:-83258156 | Msa0895400:CDS |
| CTTGTTGGGAGAGAAAGACG+AGG | 0.671332 | 6_1:-83258323 | Msa0895400:CDS |
| GTGGGCAAGAGATGTTCTGT+CGG | 0.673366 | 6_1:-83259628 | Msa0895400:CDS |
| TAAACTACACCAGTACATTG+CGG | 0.676923 | 6_1:+83258419 | None:intergenic |
| AAGCATGCAGAACCAGACAG+TGG | 0.678268 | 6_1:-83259600 | Msa0895400:CDS |
| AATTGAGATGTAGTGAAAGG+CGG | 0.698171 | 6_1:-83258607 | Msa0895400:CDS |
| TTTGAGTAGACAAAACAGTG+TGG | 0.748066 | 6_1:-83258071 | Msa0895400:exon |
| AAATCATTGAGAATTGATGG+TGG | 0.754340 | 6_1:+83260357 | None:intergenic |
| GAAATGCAGCAAGAACAGCG+CGG | 0.851698 | 6_1:+83258569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATACAATAATAATATA+CGG | - | chr6_1:83259037-83259056 | Msa0895400:intron | 10.0% |
| !! | TTAATACAATAATAATATAC+GGG | - | chr6_1:83259038-83259057 | Msa0895400:intron | 10.0% |
| !!! | GAATTTATGTGTATTATTTT+AGG | + | chr6_1:83258979-83258998 | None:intergenic | 15.0% |
| !! | TGGAAAATAAAAATAACAAA+TGG | - | chr6_1:83259350-83259369 | Msa0895400:intron | 15.0% |
| !! | GGAAAATAAAAATAACAAAT+GGG | - | chr6_1:83259351-83259370 | Msa0895400:intron | 15.0% |
| !!! | ATTTTTAATGTGAATTGTAA+GGG | + | chr6_1:83259521-83259540 | None:intergenic | 15.0% |
| !!! | TATTTTTAATGTGAATTGTA+AGG | + | chr6_1:83259522-83259541 | None:intergenic | 15.0% |
| !!! | TTTTTTTGAAGAAAATATCA+TGG | + | chr6_1:83259645-83259664 | None:intergenic | 15.0% |
| !!! | TTTTTTGATGTATTAGTTAC+CGG | - | chr6_1:83258100-83258119 | Msa0895400:CDS | 20.0% |
| !! | ATCTGTGAATAAATATCTAA+TGG | - | chr6_1:83258147-83258166 | Msa0895400:CDS | 20.0% |
| !! | GATATAACATTACTATATAC+TGG | + | chr6_1:83258229-83258248 | None:intergenic | 20.0% |
| !!! | TTATACATGATTTTACACAT+TGG | - | chr6_1:83258810-83258829 | Msa0895400:intron | 20.0% |
| ! | TGAAAATCATTGAGAATTGA+TGG | + | chr6_1:83257997-83258016 | None:intergenic | 25.0% |
| !! | ATCAATTCTCAATGATTTTC+AGG | - | chr6_1:83257996-83258015 | Msa0895400:three_prime_UTR | 25.0% |
| ! | AATTGATAAAAGACTACGAA+GGG | + | chr6_1:83258179-83258198 | None:intergenic | 25.0% |
| ! | AAATTGATAAAAGACTACGA+AGG | + | chr6_1:83258180-83258199 | None:intergenic | 25.0% |
| ! | TACCATCAACATATACAAAA+GGG | - | chr6_1:83258288-83258307 | Msa0895400:CDS | 25.0% |
| ! | AAATCAAAACAACAAATGTG+AGG | - | chr6_1:83258465-83258484 | Msa0895400:CDS | 25.0% |
| ! | TACCATCACTGTTAAAATAT+TGG | + | chr6_1:83258495-83258514 | None:intergenic | 25.0% |
| ! | CATTATCAGAAATGATAAAC+TGG | - | chr6_1:83258623-83258642 | Msa0895400:CDS | 25.0% |
| ! | ATTACGATGTACTTAATTCT+GGG | - | chr6_1:83258914-83258933 | Msa0895400:intron | 25.0% |
| ! | AAGATATAATCGCAATCTAT+CGG | - | chr6_1:83258946-83258965 | Msa0895400:intron | 25.0% |
| ! | AATAATAATATACGGGAAGT+TGG | - | chr6_1:83259045-83259064 | Msa0895400:intron | 25.0% |
| !! | ACAGACCTAATAAATTTTCT+CGG | + | chr6_1:83259277-83259296 | None:intergenic | 25.0% |
| ! | TTTATTAGGTCTGTATTACA+AGG | - | chr6_1:83259283-83259302 | Msa0895400:intron | 25.0% |
| !!! | CTTTAACTTGAACTTGTAAA+TGG | + | chr6_1:83259319-83259338 | None:intergenic | 25.0% |
| !! | CATTTACAAGTTCAAGTTAA+AGG | - | chr6_1:83259317-83259336 | Msa0895400:intron | 25.0% |
| AAATCATTGAGAATTGATGG+TGG | + | chr6_1:83257994-83258013 | None:intergenic | 30.0% | |
| ACATTACTATATACTGGTGA+AGG | + | chr6_1:83258223-83258242 | None:intergenic | 30.0% | |
| GTACCATCAACATATACAAA+AGG | - | chr6_1:83258287-83258306 | Msa0895400:CDS | 30.0% | |
| GAATTTGATCACAAAACTAG+AGG | + | chr6_1:83258344-83258363 | None:intergenic | 30.0% | |
| TTTAGAGAGTCAAAAGTTCA+TGG | - | chr6_1:83258372-83258391 | Msa0895400:CDS | 30.0% | |
| ATAAATTACCATCACTCTTG+TGG | + | chr6_1:83258435-83258454 | None:intergenic | 30.0% | |
| CAAGAGTGATGGTAATTTAT+TGG | - | chr6_1:83258435-83258454 | Msa0895400:CDS | 30.0% | |
| !!! | GTCCAATATTTTAACAGTGA+TGG | - | chr6_1:83258490-83258509 | Msa0895400:CDS | 30.0% |
| !! | TTTTAACAGTGATGGTAATG+AGG | - | chr6_1:83258498-83258517 | Msa0895400:CDS | 30.0% |
| !! | ATGTGAAAATATTCTGGTTC+AGG | + | chr6_1:83258856-83258875 | None:intergenic | 30.0% |
| CCATTCATGTGAAAATATTC+TGG | + | chr6_1:83258862-83258881 | None:intergenic | 30.0% | |
| ! | CCAGAATATTTTCACATGAA+TGG | - | chr6_1:83258859-83258878 | Msa0895400:intron | 30.0% |
| CATTACGATGTACTTAATTC+TGG | - | chr6_1:83258913-83258932 | Msa0895400:intron | 30.0% | |
| TAGAGCCGAGAAAATTTATT+AGG | - | chr6_1:83259269-83259288 | Msa0895400:intron | 30.0% | |
| ! | TTACAAGTTCAAGTTAAAGG+AGG | - | chr6_1:83259320-83259339 | Msa0895400:intron | 30.0% |
| ! | TACAAGTTCAAGTTAAAGGA+GGG | - | chr6_1:83259321-83259340 | Msa0895400:intron | 30.0% |
| !! | GTTCAAGTTGAACATGTTAA+CGG | + | chr6_1:83259440-83259459 | None:intergenic | 30.0% |
| TTAACATGTTCAACTTGAAC+TGG | - | chr6_1:83259440-83259459 | Msa0895400:intron | 30.0% | |
| TAACATGTTCAACTTGAACT+GGG | - | chr6_1:83259441-83259460 | Msa0895400:intron | 30.0% | |
| AAATCATGCAGTTCAAATTC+AGG | + | chr6_1:83259470-83259489 | None:intergenic | 30.0% | |
| TGAAATTGAGATGTAGTGAA+AGG | - | chr6_1:83259738-83259757 | Msa0895400:CDS | 30.0% | |
| ! | CTTTTTATTCACAACTGCTT+TGG | + | chr6_1:83259864-83259883 | None:intergenic | 30.0% |
| AAAAAATCTAAGCCATCTGT+AGG | - | chr6_1:83259884-83259903 | Msa0895400:CDS | 30.0% | |
| AAGAAACTGAAGCTTGAATT+GGG | - | chr6_1:83260112-83260131 | Msa0895400:intron | 30.0% | |
| GAAGTTAAGTTTGGATCATT+TGG | - | chr6_1:83260175-83260194 | Msa0895400:intron | 30.0% | |
| GTTTATCATTCACTTGTTTG+TGG | - | chr6_1:83260406-83260425 | Msa0895400:CDS | 30.0% | |
| AGTGACAACAAGGAAATGAA+GGG | + | chr6_1:83258075-83258094 | None:intergenic | 35.0% | |
| ! | TGCCCTTTTGTATATGTTGA+TGG | + | chr6_1:83258293-83258312 | None:intergenic | 35.0% |
| AACCAAATCAAGGTGATCAA+GGG | + | chr6_1:83258410-83258429 | None:intergenic | 35.0% | |
| TAACCAAATCAAGGTGATCA+AGG | + | chr6_1:83258411-83258430 | None:intergenic | 35.0% | |
| TCTTGTGGTTAACCAAATCA+AGG | + | chr6_1:83258420-83258439 | None:intergenic | 35.0% | |
| GACAATGAAAAATTCGACAC+TGG | - | chr6_1:83258523-83258542 | Msa0895400:CDS | 35.0% | |
| TTCATTCTCGCAAACGTAAA+AGG | - | chr6_1:83258596-83258615 | Msa0895400:CDS | 35.0% | |
| TCATTCTCGCAAACGTAAAA+GGG | - | chr6_1:83258597-83258616 | Msa0895400:CDS | 35.0% | |
| TTATACTCCTCAGGATCAAA+CGG | + | chr6_1:83258670-83258689 | None:intergenic | 35.0% | |
| ! | TTTGATCCTGAGGAGTATAA+AGG | - | chr6_1:83258670-83258689 | Msa0895400:CDS | 35.0% |
| !!! | ACTTTTTAGTTCAGATGCTG+TGG | - | chr6_1:83258701-83258720 | Msa0895400:intron | 35.0% |
| !!! | CTTTTTAGTTCAGATGCTGT+GGG | - | chr6_1:83258702-83258721 | Msa0895400:intron | 35.0% |
| ! | TAGAGCTTTAGTTTAGAGAG+CGG | + | chr6_1:83259098-83259117 | None:intergenic | 35.0% |
| ! | CTAAACTAAAGCTCTAACCT+AGG | - | chr6_1:83259102-83259121 | Msa0895400:intron | 35.0% |
| ! | TTAGTTATTGTGAAGTGCCT+AGG | + | chr6_1:83259122-83259141 | None:intergenic | 35.0% |
| ACAGCCTTTACAAACTCATA+AGG | - | chr6_1:83259182-83259201 | Msa0895400:intron | 35.0% | |
| CTTGCCTTATGAGTTTGTAA+AGG | + | chr6_1:83259189-83259208 | None:intergenic | 35.0% | |
| CTTTACAAACTCATAAGGCA+AGG | - | chr6_1:83259187-83259206 | Msa0895400:intron | 35.0% | |
| AAGTTAAAGGAGGGATGATT+TGG | - | chr6_1:83259330-83259349 | Msa0895400:intron | 35.0% | |
| !! | ATAACAAATGGGTTGTGTTC+AGG | - | chr6_1:83259362-83259381 | Msa0895400:intron | 35.0% |
| CTACATCTCAATTTCACTAC+TGG | + | chr6_1:83259734-83259753 | None:intergenic | 35.0% | |
| AATTGAGATGTAGTGAAAGG+CGG | - | chr6_1:83259741-83259760 | Msa0895400:CDS | 35.0% | |
| TAAACTACACCAGTACATTG+CGG | + | chr6_1:83259932-83259951 | None:intergenic | 35.0% | |
| !!! | GTAGGTTTTGAATCATCAAC+AGG | + | chr6_1:83259992-83260011 | None:intergenic | 35.0% |
| GAAGAAACTGAAGCTTGAAT+TGG | - | chr6_1:83260111-83260130 | Msa0895400:intron | 35.0% | |
| ! | CTTTGGGGATTTGACAAAAT+GGG | - | chr6_1:83260148-83260167 | Msa0895400:intron | 35.0% |
| ! | AAGTTTGGATCATTTGGTGA+TGG | - | chr6_1:83260181-83260200 | Msa0895400:intron | 35.0% |
| TTTGAGTAGACAAAACAGTG+TGG | - | chr6_1:83260277-83260296 | Msa0895400:intron | 35.0% | |
| !! | TCATTGAGAATTGATGGTGG+TGG | + | chr6_1:83257991-83258010 | None:intergenic | 40.0% |
| TCATGGCAGTGTGAAAAGAT+AGG | + | chr6_1:83258050-83258069 | None:intergenic | 40.0% | |
| CAAGGAAATGAAGGGTTTCA+TGG | + | chr6_1:83258067-83258086 | None:intergenic | 40.0% | |
| CAGTGACAACAAGGAAATGA+AGG | + | chr6_1:83258076-83258095 | None:intergenic | 40.0% | |
| ! | TCATTTCCTTGTTGTCACTG+CGG | - | chr6_1:83258076-83258095 | Msa0895400:exon | 40.0% |
| AAAAAACCGCAGTGACAACA+AGG | + | chr6_1:83258085-83258104 | None:intergenic | 40.0% | |
| ! | ATGTATTAGTTACCGGCTAG+AGG | - | chr6_1:83258107-83258126 | Msa0895400:CDS | 40.0% |
| TTCCCTTGATCACCTTGATT+TGG | - | chr6_1:83258405-83258424 | Msa0895400:CDS | 40.0% | |
| TTGGTTAACCACAAGAGTGA+TGG | - | chr6_1:83258424-83258443 | Msa0895400:CDS | 40.0% | |
| AGAAGTTTCCACAAAAGAGG+TGG | + | chr6_1:83258566-83258585 | None:intergenic | 40.0% | |
| CTCAGAAGTTTCCACAAAAG+AGG | + | chr6_1:83258569-83258588 | None:intergenic | 40.0% | |
| CGGATGTATTGCGATATTCT+TGG | + | chr6_1:83258650-83258669 | None:intergenic | 40.0% | |
| AATACATCCGTTTGATCCTG+AGG | - | chr6_1:83258660-83258679 | Msa0895400:CDS | 40.0% | |
| GCATCTGAACTAAAAAGTCC+TGG | + | chr6_1:83258699-83258718 | None:intergenic | 40.0% | |
| ! | CAAGTTTGCTCTTGTAGTCA+TGG | - | chr6_1:83259157-83259176 | Msa0895400:intron | 40.0% |
| CAACATCACAGGATTAGGAT+AGG | + | chr6_1:83259227-83259246 | None:intergenic | 40.0% | |
| ACACACAACATCACAGGATT+AGG | + | chr6_1:83259232-83259251 | None:intergenic | 40.0% | |
| TATTGCACACACAACATCAC+AGG | + | chr6_1:83259238-83259257 | None:intergenic | 40.0% | |
| AGGTCTGTATTACAAGGTCT+AGG | - | chr6_1:83259289-83259308 | Msa0895400:intron | 40.0% | |
| ATTAGGGCTACAAGGGTTAT+AGG | + | chr6_1:83259393-83259412 | None:intergenic | 40.0% | |
| AGTGCTAATTAGGGCTACAA+GGG | + | chr6_1:83259400-83259419 | None:intergenic | 40.0% | |
| GTCAACTGCAGTGCTAATTA+GGG | + | chr6_1:83259409-83259428 | None:intergenic | 40.0% | |
| ! | GAACATGTTAACGGATAACC+AGG | + | chr6_1:83259431-83259450 | None:intergenic | 40.0% |
| TTGTAAGGGTCTCACTTTGA+CGG | + | chr6_1:83259507-83259526 | None:intergenic | 40.0% | |
| !! | TTCTGAAACTCCTCTACAGA+AGG | - | chr6_1:83259676-83259695 | Msa0895400:CDS | 40.0% |
| ATCTTCTTCACCTTCTGTAG+AGG | + | chr6_1:83259689-83259708 | None:intergenic | 40.0% | |
| TGCATTTCACTTTCTGTTGC+AGG | - | chr6_1:83259794-83259813 | Msa0895400:CDS | 40.0% | |
| GTTGCAGGAAATAAACTGCA+CGG | - | chr6_1:83259809-83259828 | Msa0895400:CDS | 40.0% | |
| TGAAAACGATGACCTACAGA+TGG | + | chr6_1:83259899-83259918 | None:intergenic | 40.0% | |
| ! | ATCTGTAGGTCATCGTTTTC+AGG | - | chr6_1:83259898-83259917 | Msa0895400:CDS | 40.0% |
| AAACTACACCAGTACATTGC+GGG | + | chr6_1:83259931-83259950 | None:intergenic | 40.0% | |
| GAGAGTGACTCTAAATGCTT+AGG | - | chr6_1:83259953-83259972 | Msa0895400:CDS | 40.0% | |
| AATGCTTAGGCACACAAGTA+TGG | - | chr6_1:83259966-83259985 | Msa0895400:CDS | 40.0% | |
| !! | ACAAGCTCTGTTTCTGTAGT+AGG | + | chr6_1:83260010-83260029 | None:intergenic | 40.0% |
| ACTACAGAAACAGAGCTTGT+TGG | - | chr6_1:83260010-83260029 | Msa0895400:intron | 40.0% | |
| ! | CTACAGAAACAGAGCTTGTT+GGG | - | chr6_1:83260011-83260030 | Msa0895400:intron | 40.0% |
| GATGTCAAATTGCTGCAAAC+AGG | - | chr6_1:83260089-83260108 | Msa0895400:intron | 40.0% | |
| ! | TGGGTTCTGCATTTTACCTT+TGG | - | chr6_1:83260131-83260150 | Msa0895400:intron | 40.0% |
| ! | GGGTTCTGCATTTTACCTTT+GGG | - | chr6_1:83260132-83260151 | Msa0895400:intron | 40.0% |
| ! | GGTTCTGCATTTTACCTTTG+GGG | - | chr6_1:83260133-83260152 | Msa0895400:intron | 40.0% |
| ! | CCATTTTGTCAAATCCCCAA+AGG | + | chr6_1:83260150-83260169 | None:intergenic | 40.0% |
| ! | CCTTTGGGGATTTGACAAAA+TGG | - | chr6_1:83260147-83260166 | Msa0895400:intron | 40.0% |
| !! | ATTTGGTGATGGTTTCGAGA+GGG | - | chr6_1:83260192-83260211 | Msa0895400:intron | 40.0% |
| !! | TTGAGAATTGATGGTGGTGG+AGG | + | chr6_1:83257988-83258007 | None:intergenic | 45.0% |
| TAATGACCAAGACCTCTAGC+CGG | + | chr6_1:83258122-83258141 | None:intergenic | 45.0% | |
| TTTCCACAAAAGAGGTGGCT+AGG | + | chr6_1:83258561-83258580 | None:intergenic | 45.0% | |
| ! | GATCCTGAGGAGTATAAAGG+TGG | - | chr6_1:83258673-83258692 | Msa0895400:CDS | 45.0% |
| ! | CAGTTAGCACGCTGAGATTT+TGG | + | chr6_1:83259001-83259020 | None:intergenic | 45.0% |
| TACGGGAAGTTGGATAGCTT+TGG | - | chr6_1:83259055-83259074 | Msa0895400:intron | 45.0% | |
| !! | GAGCGGTCATTTTGTAGACT+GGG | + | chr6_1:83259081-83259100 | None:intergenic | 45.0% |
| !! | AGAGCGGTCATTTTGTAGAC+TGG | + | chr6_1:83259082-83259101 | None:intergenic | 45.0% |
| CAGTGCTAATTAGGGCTACA+AGG | + | chr6_1:83259401-83259420 | None:intergenic | 45.0% | |
| GGTCAACTGCAGTGCTAATT+AGG | + | chr6_1:83259410-83259429 | None:intergenic | 45.0% | |
| AATTAGCACTGCAGTTGACC+TGG | - | chr6_1:83259410-83259429 | Msa0895400:intron | 45.0% | |
| CACTACTGGATCCTCATACA+TGG | + | chr6_1:83259720-83259739 | None:intergenic | 45.0% | |
| !! | AAGAACAGCGCGGTTTTGTA+GGG | + | chr6_1:83259772-83259791 | None:intergenic | 45.0% |
| !! | TGTAGGTCATCGTTTTCAGG+TGG | - | chr6_1:83259901-83259920 | Msa0895400:CDS | 45.0% |
| ATGGGCGAGGAAGTTAAGTT+TGG | - | chr6_1:83260166-83260185 | Msa0895400:intron | 45.0% | |
| !! | CATTTGGTGATGGTTTCGAG+AGG | - | chr6_1:83260191-83260210 | Msa0895400:intron | 45.0% |
| AGCTATCAAGCATCCATCTG+TGG | - | chr6_1:83260216-83260235 | Msa0895400:intron | 45.0% | |
| GCATCCATCTGTGGATTTCA+TGG | - | chr6_1:83260225-83260244 | Msa0895400:intron | 45.0% | |
| CACTCCATGAAATCCACAGA+TGG | + | chr6_1:83260232-83260251 | None:intergenic | 45.0% | |
| CTACGAGTTCTTCCTCAGAA+TGG | + | chr6_1:83260307-83260326 | None:intergenic | 45.0% | |
| !! | AGAATTGATGGTGGTGGAGG+AGG | + | chr6_1:83257985-83258004 | None:intergenic | 50.0% |
| ! | TAGTTACCGGCTAGAGGTCT+TGG | - | chr6_1:83258113-83258132 | Msa0895400:CDS | 50.0% |
| TGGCCACCTTTATACTCCTC+AGG | + | chr6_1:83258679-83258698 | None:intergenic | 50.0% | |
| ! | TGAGGAGTATAAAGGTGGCC+AGG | - | chr6_1:83258678-83258697 | Msa0895400:intron | 50.0% |
| GTGGGCAAGAGATGTTCTGT+CGG | - | chr6_1:83258720-83258739 | Msa0895400:intron | 50.0% | |
| AAGCATGCAGAACCAGACAG+TGG | - | chr6_1:83258748-83258767 | Msa0895400:intron | 50.0% | |
| AGCATGCAGAACCAGACAGT+GGG | - | chr6_1:83258749-83258768 | Msa0895400:intron | 50.0% | |
| TTCGATGATGACCCACTGTC+TGG | + | chr6_1:83258763-83258782 | None:intergenic | 50.0% | |
| AGACAGTGGGTCATCATCGA+AGG | - | chr6_1:83258762-83258781 | Msa0895400:intron | 50.0% | |
| GATGCATCCTGCCATGTATG+AGG | - | chr6_1:83259706-83259725 | Msa0895400:CDS | 50.0% | |
| ACTGGATCCTCATACATGGC+AGG | + | chr6_1:83259716-83259735 | None:intergenic | 50.0% | |
| !! | CAAGAACAGCGCGGTTTTGT+AGG | + | chr6_1:83259773-83259792 | None:intergenic | 50.0% |
| GAAATGCAGCAAGAACAGCG+CGG | + | chr6_1:83259782-83259801 | None:intergenic | 50.0% | |
| CTTGTTGGGAGAGAAAGACG+AGG | - | chr6_1:83260025-83260044 | Msa0895400:intron | 50.0% | |
| GAGTGTAGCTGCAACGTTCA+AGG | - | chr6_1:83260049-83260068 | Msa0895400:intron | 50.0% | |
| GGGATTTGACAAAATGGGCG+AGG | - | chr6_1:83260153-83260172 | Msa0895400:intron | 50.0% | |
| CAGTGTGGTAAGCCATTCTG+AGG | - | chr6_1:83260292-83260311 | Msa0895400:intron | 50.0% | |
| GTGGAGGAGGTGGTACTAAC+TGG | + | chr6_1:83257972-83257991 | None:intergenic | 55.0% | |
| !! | ATTGATGGTGGTGGAGGAGG+TGG | + | chr6_1:83257982-83258001 | None:intergenic | 55.0% |
| ! | CGACCTAGCCACCTCTTTTG+TGG | - | chr6_1:83258555-83258574 | Msa0895400:CDS | 55.0% |
| GTGGAACTCCCGCAATGTAC+TGG | - | chr6_1:83259920-83259939 | Msa0895400:CDS | 55.0% | |
| !! | CAGCGCGGTTTTGTAGGGAC+AGG | + | chr6_1:83259767-83259786 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 83257934 | 83260436 | 83257934 | ID=Msa0895400;Name=Msa0895400 |
| chr6_1 | mRNA | 83257934 | 83260436 | 83257934 | ID=Msa0895400-mRNA-1;Parent=Msa0895400;Name=Msa0895400-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0.5|0.33|1|0.5|0.33|3|151|383 |
| chr6_1 | exon | 83257934 | 83258696 | 83257934 | ID=Msa0895400-mRNA-1:exon:14033;Parent=Msa0895400-mRNA-1 |
| chr6_1 | exon | 83259587 | 83260022 | 83259587 | ID=Msa0895400-mRNA-1:exon:14032;Parent=Msa0895400-mRNA-1 |
| chr6_1 | exon | 83260333 | 83260436 | 83260333 | ID=Msa0895400-mRNA-1:exon:14031;Parent=Msa0895400-mRNA-1 |
| chr6_1 | CDS | 83260333 | 83260436 | 83260333 | ID=Msa0895400-mRNA-1:cds;Parent=Msa0895400-mRNA-1 |
| chr6_1 | CDS | 83259587 | 83260022 | 83259587 | ID=Msa0895400-mRNA-1:cds;Parent=Msa0895400-mRNA-1 |
| chr6_1 | CDS | 83258085 | 83258696 | 83258085 | ID=Msa0895400-mRNA-1:cds;Parent=Msa0895400-mRNA-1 |
| chr6_1 | three_prime_UTR | 83257934 | 83258084 | 83257934 | ID=Msa0895400-mRNA-1:three_prime_utr;Parent=Msa0895400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
