AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479970 MtrunA17_Chr3g0138311 97.929 338 1 1 4 335 560 897 0.0 699
Msa0479970 MtrunA17_Chr1g0148791 85.965 342 37 3 4 335 562 902 0.0 613
Msa0479970 MtrunA17_Chr1g0171711 56.765 340 132 3 11 335 447 786 5.18e-136 405
Msa0479970 MtrunA17_Chr7g0237271 51.039 337 149 4 14 335 449 784 2.82e-116 354
Msa0479970 MtrunA17_Chr7g0237241 50.742 337 150 4 14 335 440 775 4.09e-115 350
Msa0479970 MtrunA17_Chr4g0062881 51.807 332 143 6 13 335 134 457 1.20e-111 332
Msa0479970 MtrunA17_Chr2g0282401 47.321 336 156 5 19 335 455 788 4.01e-96 301
Msa0479970 MtrunA17_Chr4g0047051 39.711 277 157 4 68 335 33 308 1.20e-64 206
Msa0479970 MtrunA17_Chr4g0047071 39.007 282 153 7 71 335 3 282 8.25e-61 196
Msa0479970 MtrunA17_Chr4g0047091 37.102 283 166 6 63 335 86 366 2.94e-55 184
Msa0479970 MtrunA17_Chr4g0047061 39.300 257 144 6 88 335 77 330 4.38e-51 172
Msa0479970 MtrunA17_Chr4g0047101 39.224 232 124 5 62 288 23 242 1.89e-41 145
Msa0479970 MtrunA17_Chr4g0047111 38.732 142 62 3 149 288 7 125 6.15e-24 95.9
Msa0479970 MtrunA17_Chr5g0405851 26.205 332 203 11 38 334 125 449 3.99e-23 99.8
Msa0479970 MtrunA17_Chr1g0172501 26.014 296 198 9 53 334 264 552 1.52e-20 92.4
Msa0479970 MtrunA17_Chr3g0093681 25.676 296 199 9 53 334 264 552 1.01e-19 90.1
Msa0479970 MtrunA17_Chr6g0448921 29.185 233 155 8 63 288 14 243 2.61e-19 89.0
Msa0479970 MtrunA17_Chr1g0185501 27.500 280 149 10 68 334 30 268 6.73e-17 80.1
Msa0479970 MtrunA17_Chr1g0185501 23.697 211 149 6 58 258 104 312 1.96e-13 70.1
Msa0479970 MtrunA17_Chr1g0163021 61.290 62 18 2 233 288 19 80 7.40e-17 75.5
Msa0479970 MtrunA17_Chr4g0053651 23.585 318 199 12 56 334 221 533 1.99e-16 80.1
Msa0479970 MtrunA17_Chr1g0200901 26.367 311 207 8 37 333 98 400 6.36e-16 78.2
Msa0479970 MtrunA17_Chr3g0136971 28.713 202 136 6 62 258 416 614 1.22e-15 77.8
Msa0479970 MtrunA17_Chr3g0136971 33.117 154 98 3 71 221 467 618 5.15e-15 75.9
Msa0479970 MtrunA17_Chr3g0136971 25.714 280 178 11 68 334 352 614 3.78e-11 64.3
Msa0479970 MtrunA17_Chr5g0401661 22.050 322 207 10 53 334 323 640 1.23e-15 77.8
Msa0479970 MtrunA17_Chr5g0401661 27.753 227 143 9 68 278 440 661 2.84e-14 73.9
Msa0479970 MtrunA17_Chr4g0067151 26.667 255 174 7 50 294 63 314 1.26e-15 76.6
Msa0479970 MtrunA17_Chr4g0067151 28.906 256 157 10 103 334 23 277 5.64e-15 74.7
Msa0479970 MtrunA17_Chr4g0067151 24.675 231 159 7 41 261 99 324 2.22e-14 72.8
Msa0479970 MtrunA17_Chr5g0401671 21.562 320 209 10 53 334 235 550 1.42e-15 77.8
Msa0479970 MtrunA17_Chr5g0401671 28.488 172 110 4 58 218 423 592 2.60e-12 67.8
Msa0479970 MtrunA17_Chr4g0004241 23.474 213 141 4 60 258 52 256 5.42e-15 76.3
Msa0479970 MtrunA17_Chr2g0331981 23.005 213 142 4 60 258 52 256 7.63e-15 75.5
Msa0479970 MtrunA17_Chr2g0281451 26.068 234 163 8 63 289 13 243 1.57e-14 74.7
Msa0479970 MtrunA17_Chr1g0168391 28.342 187 128 3 79 260 238 423 1.96e-14 73.9
Msa0479970 MtrunA17_Chr2g0331961 21.801 211 159 3 54 258 48 258 3.78e-14 72.0
Msa0479970 MtrunA17_Chr4g0030281 58.824 68 1 1 105 172 593 633 5.01e-14 73.2
Msa0479970 MtrunA17_Chr1g0197551 27.273 198 115 5 71 260 57 233 6.49e-14 72.8
Msa0479970 MtrunA17_Chr7g0253861 21.812 298 212 7 56 333 46 342 9.87e-14 71.2
Msa0479970 MtrunA17_Chr8g0392701 26.400 250 145 12 79 301 30 267 1.71e-13 70.5
Msa0479970 MtrunA17_Chr4g0034491 25.328 229 148 7 122 335 34 254 4.50e-13 70.1
Msa0479970 MtrunA17_Chr4g0035611 26.178 191 126 5 71 260 57 233 1.09e-12 69.3
Msa0479970 MtrunA17_Chr4g0070791 27.459 244 144 11 120 334 31 270 2.56e-12 66.6
Msa0479970 MtrunA17_Chr4g0059031 29.496 139 96 2 48 186 483 619 3.54e-12 67.4
Msa0479970 MtrunA17_Chr4g0059031 25.263 190 127 4 79 255 462 649 1.31e-11 65.9
Msa0479970 MtrunA17_Chr3g0095501 24.382 283 190 9 72 334 277 555 2.41e-11 64.7
Msa0479970 MtrunA17_Chr2g0295791 23.482 247 178 8 43 282 106 348 4.95e-11 63.5
Msa0479970 MtrunA17_Chr7g0246741 27.041 196 137 4 68 258 372 566 5.47e-11 63.9
Msa0479970 MtrunA17_Chr7g0266251 25.688 218 132 9 68 257 72 287 9.94e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479970 AT4G32551.1 74.775 333 74 2 13 335 599 931 0.0 536
Msa0479970 AT4G32551.2 74.775 333 74 2 13 335 637 969 0.0 536
Msa0479970 AT2G32700.2 54.412 340 139 5 11 335 449 787 1.31e-128 386
Msa0479970 AT2G32700.5 54.412 340 139 5 11 335 449 787 1.31e-128 386
Msa0479970 AT2G32700.1 54.412 340 139 5 11 335 449 787 1.31e-128 386
Msa0479970 AT2G32700.4 54.412 340 139 5 11 335 449 787 1.31e-128 386
Msa0479970 AT2G32700.3 54.412 340 139 5 11 335 449 787 1.31e-128 386
Msa0479970 AT2G32700.7 54.412 340 139 5 11 335 468 806 2.62e-128 386
Msa0479970 AT2G32700.6 54.599 337 137 5 14 335 450 785 3.92e-128 385
Msa0479970 AT2G41500.1 27.046 281 188 7 68 334 258 535 4.73e-23 100
Msa0479970 AT2G41500.1 26.368 201 141 5 67 262 341 539 5.02e-13 70.1
Msa0479970 AT2G41500.2 27.046 281 188 7 68 334 258 535 4.73e-23 100
Msa0479970 AT2G41500.2 26.368 201 141 5 67 262 341 539 5.02e-13 70.1
Msa0479970 AT4G02730.1 27.986 293 158 9 55 334 33 285 6.98e-21 92.0
Msa0479970 AT4G02730.1 24.590 305 181 11 43 335 63 330 2.07e-11 64.7
Msa0479970 AT5G08390.1 30.244 205 134 7 63 261 14 215 6.07e-19 88.6
Msa0479970 AT5G08390.1 23.305 236 136 9 106 334 15 212 4.38e-11 64.7
Msa0479970 AT5G23430.3 31.220 205 132 7 63 261 14 215 6.47e-19 88.2
Msa0479970 AT5G23430.2 31.220 205 132 7 63 261 14 215 6.47e-19 88.2
Msa0479970 AT5G23430.1 31.220 205 132 7 63 261 14 215 7.09e-19 88.2
Msa0479970 AT2G43770.1 23.264 288 200 7 66 333 54 340 5.97e-17 80.9
Msa0479970 AT2G43770.1 25.514 243 164 9 61 289 92 331 1.70e-12 67.8
Msa0479970 AT3G49660.1 22.917 288 199 9 68 334 27 312 1.01e-16 80.1
Msa0479970 AT3G49660.1 27.451 255 160 10 103 335 20 271 1.04e-15 77.0
Msa0479970 AT3G49660.1 27.228 202 137 6 70 263 118 317 1.77e-14 73.6
Msa0479970 AT2G33340.2 31.414 191 119 6 79 260 236 423 1.06e-16 81.3
Msa0479970 AT2G33340.1 31.414 191 119 6 79 260 236 423 1.06e-16 81.3
Msa0479970 AT2G33340.3 31.414 191 119 6 79 260 236 423 1.26e-16 80.9
Msa0479970 AT1G61210.3 26.432 227 157 8 63 282 13 236 1.70e-16 81.3
Msa0479970 AT1G61210.1 26.432 227 157 8 63 282 13 236 2.97e-16 80.5
Msa0479970 AT1G61210.2 26.432 227 157 8 63 282 13 236 3.05e-16 80.5
Msa0479970 AT5G67320.1 24.490 343 201 8 38 334 238 568 4.85e-16 79.3
Msa0479970 AT5G25150.2 27.193 228 154 7 65 283 418 642 1.27e-15 78.2
Msa0479970 AT5G25150.2 25.000 280 176 10 68 334 355 613 4.80e-11 64.3
Msa0479970 AT5G25150.1 27.193 228 154 7 65 283 418 642 1.37e-15 78.2
Msa0479970 AT5G25150.1 25.000 280 176 10 68 334 355 613 4.90e-11 64.3
Msa0479970 AT1G52360.2 23.474 213 141 4 60 258 96 300 2.15e-15 77.8
Msa0479970 AT3G15980.5 23.944 213 140 4 60 258 52 256 2.34e-15 77.8
Msa0479970 AT1G52360.3 23.474 213 141 4 60 258 52 256 2.36e-15 77.8
Msa0479970 AT3G15980.7 23.944 213 140 4 60 258 52 256 2.44e-15 77.4
Msa0479970 AT3G15980.1 23.944 213 140 4 60 258 52 256 2.62e-15 77.4
Msa0479970 AT1G52360.4 23.474 213 141 4 60 258 52 256 2.63e-15 77.4
Msa0479970 AT1G52360.1 23.474 213 141 4 60 258 52 256 2.63e-15 77.4
Msa0479970 AT3G15980.3 23.944 213 140 4 60 258 52 256 2.93e-15 77.4
Msa0479970 AT3G15980.6 23.944 213 140 4 60 258 52 256 2.93e-15 77.4
Msa0479970 AT3G15980.2 23.944 213 140 4 60 258 52 256 2.93e-15 77.4
Msa0479970 AT3G15980.4 23.944 213 140 4 60 258 52 256 2.93e-15 77.4
Msa0479970 AT1G11160.4 25.551 227 159 8 63 282 13 236 3.27e-15 77.4
Msa0479970 AT1G11160.1 25.551 227 159 8 63 282 13 236 3.41e-15 77.0
Msa0479970 AT1G11160.2 25.551 227 159 8 63 282 13 236 3.60e-15 77.0
Msa0479970 AT1G71840.1 24.561 285 196 7 68 335 116 398 2.24e-14 73.9
Msa0479970 AT1G79990.2 22.791 215 144 4 58 258 50 256 5.98e-14 73.2
Msa0479970 AT1G79990.1 22.791 215 144 4 58 258 50 256 6.63e-14 73.2
Msa0479970 AT1G18080.1 27.727 220 139 9 79 282 30 245 9.82e-14 71.6
Msa0479970 AT1G04510.2 28.947 190 126 4 79 260 236 424 2.15e-13 71.2
Msa0479970 AT2G21390.1 24.627 268 149 8 71 334 57 275 2.28e-13 71.6
Msa0479970 AT1G04510.1 28.947 190 126 4 79 260 236 424 2.29e-13 71.2
Msa0479970 AT1G62020.1 24.345 267 151 7 71 334 57 275 3.72e-13 70.9
Msa0479970 AT5G43920.1 24.252 301 200 11 58 334 217 513 6.95e-13 69.7
Msa0479970 AT3G18130.1 25.714 245 153 11 79 301 30 267 1.98e-12 67.8
Msa0479970 AT5G16750.1 27.000 200 134 6 59 249 54 250 4.19e-12 67.8
Msa0479970 AT5G16750.1 33.333 108 70 2 79 186 513 618 6.11e-12 67.0
Msa0479970 AT4G29830.1 27.801 241 143 11 122 334 33 270 1.62e-11 64.7
Msa0479970 AT1G48630.1 25.306 245 154 11 79 301 30 267 1.87e-11 64.7
Msa0479970 AT4G15900.1 23.529 255 179 8 92 334 162 412 2.79e-11 64.7
Msa0479970 AT3G18860.2 26.809 235 140 9 122 335 34 257 4.93e-11 64.3
Msa0479970 AT3G18860.1 26.809 235 140 9 122 335 34 257 5.25e-11 64.3
Msa0479970 AT3G15354.4 25.311 241 164 6 64 292 283 519 5.59e-11 63.9
Msa0479970 AT3G15354.5 25.311 241 164 6 64 292 283 519 5.59e-11 63.9
Msa0479970 AT5G13480.4 24.658 292 172 8 51 334 141 392 7.71e-11 63.5
Msa0479970 AT5G13480.3 24.658 292 172 8 51 334 141 392 8.05e-11 63.5
Msa0479970 AT3G15354.3 25.620 242 163 7 64 292 532 769 8.09e-11 63.5
Msa0479970 AT5G13480.2 24.658 292 172 8 51 334 164 415 8.26e-11 63.5
Msa0479970 AT1G53090.4 24.896 241 165 6 64 292 262 498 9.41e-11 63.2
Msa0479970 AT5G13480.1 24.658 292 172 8 51 334 153 404 9.82e-11 63.2

Find 81 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATAAGATCATCTTTATT+TGG 0.065820 3_3:-85147278 None:intergenic
ACCCACCGCCTCCACTCTTT+TGG 0.240322 3_3:+85148361 Msa0479970:three_prime_UTR
CAAACTTCGAATATTGTAAA+TGG 0.284314 3_3:-85148502 None:intergenic
TTGGCGGTTTCAACTGTAAA+TGG 0.301887 3_3:+85148174 Msa0479970:CDS
ATGTAATGCAGGCTGTTATA+TGG 0.307030 3_3:+85146329 Msa0479970:intron
TCGACAAAACTGTCAGGGTT+TGG 0.315809 3_3:+85146455 Msa0479970:CDS
CGACAAAACTGTCAGGGTTT+GGG 0.331128 3_3:+85146456 Msa0479970:CDS
ATATAAGATCATCTTTATTT+GGG 0.338718 3_3:-85147277 None:intergenic
GTGAGGACTCTGTCAGGATT+TGG 0.366793 3_3:+85147854 Msa0479970:CDS
GGCATGCCGATATTCATTAA+AGG 0.372801 3_3:+85147614 Msa0479970:CDS
GGATCCATCGGGAGAATTGC+TGG 0.381986 3_3:+85147822 Msa0479970:CDS
GACGAGGTTGAAATCTCATC+TGG 0.387712 3_3:-85147530 None:intergenic
GACAATAGATTCTGTATGTT+GGG 0.395558 3_3:+85147801 Msa0479970:CDS
AAGTGGTGGCCATGACAAAA+AGG 0.396352 3_3:+85146145 Msa0479970:CDS
CAGTTGTGTTAGAGTCTCTA+AGG 0.417904 3_3:+85147349 Msa0479970:CDS
TGATGGTTTAATTACTGCCT+TGG 0.438872 3_3:+85148155 Msa0479970:CDS
ACGACAAGTTCATCAAGCTT+TGG 0.441767 3_3:+85148217 Msa0479970:CDS
GTCAGGATTTGGACTCTTGA+AGG 0.442934 3_3:+85147865 Msa0479970:CDS
ATCAGATGAGAAATGGCAAC+AGG 0.462338 3_3:-85146108 None:intergenic
TGGTTTAATTACTGCCTTGG+CGG 0.462707 3_3:+85148158 Msa0479970:CDS
TTCTGTATGTTGGGATCCAT+CGG 0.462819 3_3:+85147810 Msa0479970:CDS
AGACAATAGATTCTGTATGT+TGG 0.466596 3_3:+85147800 Msa0479970:CDS
CTGTGAGTGAGGACTCTGTC+AGG 0.473083 3_3:+85147848 Msa0479970:CDS
CTTCATTCGACAAAACTGTC+AGG 0.474156 3_3:+85146449 Msa0479970:CDS
TGATAAGGATCTTGAATTGA+AGG 0.475846 3_3:+85145307 Msa0479970:CDS
CTTGATGAACTTGTCGTGAC+TGG 0.476097 3_3:-85148211 None:intergenic
TGTTGCCATTTCTCATCTGA+TGG 0.476232 3_3:+85146110 Msa0479970:CDS
AGATCCTGTTGGCCGTTGTA+TGG 0.479819 3_3:+85145412 Msa0479970:CDS
GTTCATGAGCTTAGCTGTAA+TGG 0.482292 3_3:+85147895 Msa0479970:CDS
GGCTGATGTGGATCGCTTTG+TGG 0.483591 3_3:+85145328 Msa0479970:CDS
AATTAATCCAAGCTGAGTTC+AGG 0.485969 3_3:+85148434 Msa0479970:three_prime_UTR
TCAGGATTTGGACTCTTGAA+GGG 0.495748 3_3:+85147866 Msa0479970:CDS
ACATCCATACAACGGCCAAC+AGG 0.497907 3_3:-85145416 None:intergenic
ATGACTTTGTCTGCTCATGA+TGG 0.507469 3_3:+85148138 Msa0479970:CDS
CTTTGGAAGTAACTAACATA+AGG 0.508508 3_3:+85148234 Msa0479970:exon
GTCCAAAAGAGTGGAGGCGG+TGG 0.515293 3_3:-85148363 None:intergenic
GTGGCATGCTTGCACTGAAA+CGG 0.517376 3_3:-85146414 None:intergenic
CAACCAATGACGAGCAGTGA+AGG 0.518554 3_3:-85147955 None:intergenic
ACAATACTCGCGATACAGTC+AGG 0.527168 3_3:+85148275 Msa0479970:three_prime_UTR
ATGAGATTTCAACCTCGTCT+AGG 0.533516 3_3:+85147534 Msa0479970:CDS
CATCGTGTCTATACTTGATG+TGG 0.541488 3_3:+85147584 Msa0479970:CDS
TGAGATTTCAACCTCGTCTA+GGG 0.547964 3_3:+85147535 Msa0479970:CDS
CAACGGCCAACAGGATCTCT+AGG 0.552220 3_3:-85145407 None:intergenic
TTCATTCGACAAAACTGTCA+GGG 0.553440 3_3:+85146450 Msa0479970:CDS
GTGGATCGCTTTGTGGACGA+TGG 0.553830 3_3:+85145335 Msa0479970:CDS
ACGAGCAGTGAAGGGAATGT+TGG 0.559129 3_3:-85147946 None:intergenic
GTATCGCGAGTATTGTCAAT+CGG 0.564534 3_3:-85148268 None:intergenic
AAGTCTACCTGAACTCAGCT+TGG 0.565977 3_3:-85148441 None:intergenic
AACCAATGACGAGCAGTGAA+GGG 0.566783 3_3:-85147954 None:intergenic
GTCATTGGAGCTGTGGAACA+TGG 0.570092 3_3:+85148101 Msa0479970:intron
TCTTGAATTGAAGGCTGATG+TGG 0.574684 3_3:+85145316 Msa0479970:CDS
AACGTTGCATTACATTACAT+AGG 0.582212 3_3:-85148389 None:intergenic
TCTGTATGTTGGGATCCATC+GGG 0.588620 3_3:+85147811 Msa0479970:CDS
CAGGATTTGGACTCTTGAAG+GGG 0.592600 3_3:+85147867 Msa0479970:CDS
GCAGTGAAGGGAATGTTGGA+TGG 0.593172 3_3:-85147942 None:intergenic
TGGATCGCTTTGTGGACGAT+GGG 0.599275 3_3:+85145336 Msa0479970:CDS
TTAGTCCAAAAGAGTGGAGG+CGG 0.605487 3_3:-85148366 None:intergenic
ATATGTTCGTGTGATGGTGA+TGG 0.610859 3_3:+85147296 Msa0479970:CDS
GATGCCAGCAATTCTCCCGA+TGG 0.613289 3_3:-85147826 None:intergenic
CATAGGTTAGTCCAAAAGAG+TGG 0.615725 3_3:-85148372 None:intergenic
GATCTTATATGTTCGTGTGA+TGG 0.621408 3_3:+85147290 Msa0479970:CDS
ACGAGGTTGAAATCTCATCT+GGG 0.623795 3_3:-85147529 None:intergenic
TTGTGTAGTCATTGGAGCTG+TGG 0.626523 3_3:+85148094 Msa0479970:intron
GTGATGGTGAGATACGGTAT+TGG 0.634594 3_3:+85147312 Msa0479970:CDS
TATACTTGATGTGGAAACAC+AGG 0.635213 3_3:+85147593 Msa0479970:CDS
TCCAAAAGAGTGGAGGCGGT+GGG 0.635542 3_3:-85148362 None:intergenic
ATTGCTGGCATCTGTGAGTG+AGG 0.640756 3_3:+85147837 Msa0479970:CDS
AATGAAGATGTTGCTAGACG+TGG 0.645026 3_3:-85146433 None:intergenic
GTGATGGTGATGGTGAGATA+CGG 0.649915 3_3:+85147306 Msa0479970:CDS
GATGGAAAATTACTTGCAAG+TGG 0.651402 3_3:+85146128 Msa0479970:CDS
GCAGGCTGTTATATGGTATG+CGG 0.663868 3_3:+85146336 Msa0479970:intron
GGAAAATTACTTGCAAGTGG+TGG 0.669872 3_3:+85146131 Msa0479970:CDS
GCAAGGTACCTCCCTAGACG+AGG 0.669924 3_3:-85147546 None:intergenic
AGGTTAGTCCAAAAGAGTGG+AGG 0.672044 3_3:-85148369 None:intergenic
ATTTACAGTTGAAACCGCCA+AGG 0.674075 3_3:-85148172 None:intergenic
ACGGATCCTAGAGATCCTGT+TGG 0.677640 3_3:+85145401 Msa0479970:CDS
GATTTCAACCTCGTCTAGGG+AGG 0.679700 3_3:+85147538 Msa0479970:CDS
CTTTGCTTACATCCATACAA+CGG 0.680525 3_3:-85145424 None:intergenic
CGTTGTATGGATGTAAGCAA+AGG 0.710350 3_3:+85145425 Msa0479970:CDS
CGGTATTGGAGCATAAACAA+CGG 0.729220 3_3:+85147326 Msa0479970:CDS
AAAGTGCGAAGAGAATACCC+AGG 0.782358 3_3:-85147215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTCTTTTTTTTTTTTTTTT+TGG + chr3_3:85144054-85144073 Msa0479970:intron 10.0%
!!! AATGATTTTTTTTAACAAAA+TGG + chr3_3:85144371-85144390 Msa0479970:intron 10.0%
!!! GTTTAGAAAAAAATAGATTT+TGG + chr3_3:85144310-85144329 Msa0479970:intron 15.0%
!! AATCCTAACAATATTATTTA+TGG + chr3_3:85144694-85144713 Msa0479970:intron 15.0%
!! AATCCATAAATAATATTGTT+AGG - chr3_3:85144700-85144719 None:intergenic 15.0%
!!! TTTATCTAAAGCATTTAAAA+AGG - chr3_3:85144731-85144750 None:intergenic 15.0%
!!! ATTTTATGATCAATATAAAG+TGG - chr3_3:85145462-85145481 None:intergenic 15.0%
!!! GTTTTCAAATTAAATATTTG+AGG - chr3_3:85145871-85145890 None:intergenic 15.0%
!!! ATTATTTCTATATTTTCCAA+AGG + chr3_3:85146544-85146563 Msa0479970:intron 15.0%
!!! TTATTTCTATATTTTCCAAA+GGG + chr3_3:85146545-85146564 Msa0479970:intron 15.0%
!!! ATATAAGATCATCTTTATTT+GGG - chr3_3:85147280-85147299 None:intergenic 15.0%
!!! CTTTATCTTCTATTTTTTAA+GGG + chr3_3:85147445-85147464 Msa0479970:intron 15.0%
!!! TGAAATAGATTTTCATTTTG+AGG + chr3_3:85144343-85144362 Msa0479970:intron 20.0%
!!! GATTAATATAGTTTCAAGTA+TGG - chr3_3:85144777-85144796 None:intergenic 20.0%
!! AAACTATATTAATCGTAGAA+AGG + chr3_3:85144783-85144802 Msa0479970:intron 20.0%
!!! TTGTTGGTTATGTAATTAAA+AGG + chr3_3:85145916-85145935 Msa0479970:intron 20.0%
!! CAAAATTCATTTCTTTATTC+TGG + chr3_3:85146267-85146286 Msa0479970:intron 20.0%
!! TTACTAATATAATACCACTT+TGG + chr3_3:85146517-85146536 Msa0479970:intron 20.0%
!! TACTAATATAATACCACTTT+GGG + chr3_3:85146518-85146537 Msa0479970:intron 20.0%
!! CTTAAAAAATATGAGGATTA+CGG - chr3_3:85146962-85146981 None:intergenic 20.0%
!! ACATGATCTTAAAAAATATG+AGG - chr3_3:85146969-85146988 None:intergenic 20.0%
!! TTAGATTAATGTTTACTACA+TGG + chr3_3:85147014-85147033 Msa0479970:intron 20.0%
!! CATATAAGATCATCTTTATT+TGG - chr3_3:85147281-85147300 None:intergenic 20.0%
!! CCTTAAAAAATAGAAGATAA+AGG - chr3_3:85147447-85147466 None:intergenic 20.0%
!!! CCTTTATCTTCTATTTTTTA+AGG + chr3_3:85147444-85147463 Msa0479970:intron 20.0%
!!! GTTTTACCTTTAATGAATAT+CGG - chr3_3:85147623-85147642 None:intergenic 20.0%
!! GAACTTAAAATATTAACCAA+TGG + chr3_3:85147739-85147758 Msa0479970:intron 20.0%
!! TTAAAAAATCCAAAAAAGAG+AGG - chr3_3:85148338-85148357 None:intergenic 20.0%
! AAAAAAAAAAGAAGAAGCTG+AGG - chr3_3:85144048-85144067 None:intergenic 25.0%
! TCTACTACAATTATGAGTAA+GGG + chr3_3:85144868-85144887 Msa0479970:intron 25.0%
! TCACATTAATTATCCTGTAA+TGG + chr3_3:85144992-85145011 Msa0479970:intron 25.0%
!! TACTCATTGCAATTTCATTT+TGG + chr3_3:85145276-85145295 Msa0479970:intron 25.0%
!!! TTTTTTATCGCAAGATGATA+CGG + chr3_3:85145382-85145401 Msa0479970:CDS 25.0%
! TCTTATCTTTCAGAATTTGA+AGG + chr3_3:85145557-85145576 Msa0479970:intron 25.0%
!! TTCTTTATTCTGGTTAGATA+TGG + chr3_3:85146277-85146296 Msa0479970:intron 25.0%
! ACTAATATAATACCACTTTG+GGG + chr3_3:85146519-85146538 Msa0479970:intron 25.0%
!! ATCTTTATAACTTTTCAGAG+TGG - chr3_3:85146628-85146647 None:intergenic 25.0%
! AAAATACTTTCAGTGAAAGA+TGG - chr3_3:85146661-85146680 None:intergenic 25.0%
!! TTTGAGATTGTTCAAGTTAT+AGG + chr3_3:85146763-85146782 Msa0479970:intron 25.0%
!!! TAAACACCAACACTTATTTT+GGG + chr3_3:85146866-85146885 Msa0479970:intron 25.0%
!!! ACATAGATGCTATTTTATCA+TGG + chr3_3:85146930-85146949 Msa0479970:intron 25.0%
! TCGAATCTAAATACAATAAC+AGG - chr3_3:85147064-85147083 None:intergenic 25.0%
! GTTAGATCTATATCTTTACT+GGG + chr3_3:85147086-85147105 Msa0479970:intron 25.0%
! ACAATTCATCTTCTATATAG+AGG - chr3_3:85147145-85147164 None:intergenic 25.0%
! ATGAATTGTGTTTCTCTAAT+GGG + chr3_3:85147156-85147175 Msa0479970:intron 25.0%
!! TAAAGTGACAATTTTCTTGT+TGG + chr3_3:85147492-85147511 Msa0479970:intron 25.0%
!! TCTAAAACTATGATGATAAC+CGG - chr3_3:85147716-85147735 None:intergenic 25.0%
! TACAACATTAAAACAACCAT+TGG - chr3_3:85147758-85147777 None:intergenic 25.0%
! TAATGTTGTACAATGATTGT+AGG + chr3_3:85147768-85147787 Msa0479970:intron 25.0%
! AATGTTGTACAATGATTGTA+GGG + chr3_3:85147769-85147788 Msa0479970:intron 25.0%
! CTTAATTGCATATTAGAGTA+GGG - chr3_3:85148048-85148067 None:intergenic 25.0%
! TCTTAATTGCATATTAGAGT+AGG - chr3_3:85148049-85148068 None:intergenic 25.0%
! AAGAAATTCATGCTTGATAT+TGG + chr3_3:85148065-85148084 Msa0479970:intron 25.0%
!!! GTAATTATTCCTCTCTTTTT+TGG + chr3_3:85148326-85148345 Msa0479970:three_prime_UTR 25.0%
! CAAACTTCGAATATTGTAAA+TGG - chr3_3:85148505-85148524 None:intergenic 25.0%
!! ATATGTGCAAGCCTTATTAA+CGG + chr3_3:85144021-85144040 Msa0479970:intron 30.0%
AGTCAGGATCCTTATAAATT+GGG + chr3_3:85144097-85144116 Msa0479970:intron 30.0%
TGAAACAAACGCATACATAA+GGG - chr3_3:85144141-85144160 None:intergenic 30.0%
CACATCTAATAAGCAATTTG+CGG - chr3_3:85144509-85144528 None:intergenic 30.0%
GCAAATTGCTTATTAGATGT+GGG + chr3_3:85144508-85144527 Msa0479970:intron 30.0%
CTAAATGTCTCGTAGATAAT+AGG - chr3_3:85144581-85144600 None:intergenic 30.0%
! GATGAAGGTGTGATTAAAAT+TGG + chr3_3:85144618-85144637 Msa0479970:intron 30.0%
! TAGTTTCAAGTATGGAAATG+TGG - chr3_3:85144769-85144788 None:intergenic 30.0%
GTCTACTACAATTATGAGTA+AGG + chr3_3:85144867-85144886 Msa0479970:intron 30.0%
TACAATTATGAGTAAGGGAA+AGG + chr3_3:85144873-85144892 Msa0479970:intron 30.0%
ACAATTATGAGTAAGGGAAA+GGG + chr3_3:85144874-85144893 Msa0479970:intron 30.0%
TTTATACGCGGTTTAATTGA+TGG + chr3_3:85145226-85145245 Msa0479970:intron 30.0%
TGATAAGGATCTTGAATTGA+AGG + chr3_3:85145307-85145326 Msa0479970:CDS 30.0%
AGTGTAAAACGAATTTACAC+TGG + chr3_3:85145718-85145737 Msa0479970:intron 30.0%
TAAAGAGTAACTATGTACAG+TGG - chr3_3:85145974-85145993 None:intergenic 30.0%
! ATTTTCCATCAGATGAGAAA+TGG - chr3_3:85146118-85146137 None:intergenic 30.0%
!! TTTTTCAATTTCCTTCAAGC+AGG - chr3_3:85146247-85146266 None:intergenic 30.0%
TAGAAATAATTTCCCCAAAG+TGG - chr3_3:85146534-85146553 None:intergenic 30.0%
! GTAAACACCAACACTTATTT+TGG + chr3_3:85146865-85146884 Msa0479970:intron 30.0%
TTCAATAAACTTCCAATTGC+TGG - chr3_3:85146895-85146914 None:intergenic 30.0%
TTACTACATGGAGTTGTAAA+AGG + chr3_3:85147026-85147045 Msa0479970:intron 30.0%
CGTTAGATCTATATCTTTAC+TGG + chr3_3:85147085-85147104 Msa0479970:intron 30.0%
GATGTTAATGATTGCATTCT+TGG + chr3_3:85147108-85147127 Msa0479970:intron 30.0%
GATGAATTGTGTTTCTCTAA+TGG + chr3_3:85147155-85147174 Msa0479970:intron 30.0%
!! TGACAATTTTCTTGTTGGTT+AGG + chr3_3:85147497-85147516 Msa0479970:intron 30.0%
!! GACAATTTTCTTGTTGGTTA+GGG + chr3_3:85147498-85147517 Msa0479970:intron 30.0%
TTAGAAGTTCTACTTGAGTT+AGG + chr3_3:85147661-85147680 Msa0479970:intron 30.0%
TAGAAGTTCTACTTGAGTTA+GGG + chr3_3:85147662-85147681 Msa0479970:intron 30.0%
! AAGATAAAAAGTGCACAACT+CGG - chr3_3:85147691-85147710 None:intergenic 30.0%
!! TGTGCACTTTTTATCTTATC+CGG + chr3_3:85147694-85147713 Msa0479970:intron 30.0%
AGACAATAGATTCTGTATGT+TGG + chr3_3:85147800-85147819 Msa0479970:CDS 30.0%
GACAATAGATTCTGTATGTT+GGG + chr3_3:85147801-85147820 Msa0479970:CDS 30.0%
TCAACAAGAAAATAAAGACG+TGG - chr3_3:85147994-85148013 None:intergenic 30.0%
CTTGTTGATATTTGCGAATT+TGG + chr3_3:85148006-85148025 Msa0479970:intron 30.0%
! CTTTGGAAGTAACTAACATA+AGG + chr3_3:85148234-85148253 Msa0479970:exon 30.0%
AACGTTGCATTACATTACAT+AGG - chr3_3:85148392-85148411 None:intergenic 30.0%
GAGTCAGGATCCTTATAAAT+TGG + chr3_3:85144096-85144115 Msa0479970:intron 35.0%
AGGATCCTTATAAATTGGGT+TGG + chr3_3:85144101-85144120 Msa0479970:intron 35.0%
GGATCCTTATAAATTGGGTT+GGG + chr3_3:85144102-85144121 Msa0479970:intron 35.0%
CTGAAACAAACGCATACATA+AGG - chr3_3:85144142-85144161 None:intergenic 35.0%
TAATAAGCAATTTGCGGACA+GGG - chr3_3:85144503-85144522 None:intergenic 35.0%
CGCAAATTGCTTATTAGATG+TGG + chr3_3:85144507-85144526 Msa0479970:intron 35.0%
! GGATATGATTGTCATTTCCA+AGG + chr3_3:85144529-85144548 Msa0479970:intron 35.0%
CTACGAGACATTTAGATGTA+CGG + chr3_3:85144586-85144605 Msa0479970:intron 35.0%
CAATTTCAACCAACAACTAG+GGG - chr3_3:85144954-85144973 None:intergenic 35.0%
CCAATTTCAACCAACAACTA+GGG - chr3_3:85144955-85144974 None:intergenic 35.0%
TCCAATTTCAACCAACAACT+AGG - chr3_3:85144956-85144975 None:intergenic 35.0%
TGGTTGAAATTGGAACATCT+TGG + chr3_3:85144962-85144981 Msa0479970:intron 35.0%
! TTATCCTGTAATGGAAGAGT+AGG + chr3_3:85145001-85145020 Msa0479970:intron 35.0%
TATAAAAGCAACTCACCAAC+TGG - chr3_3:85145212-85145231 None:intergenic 35.0%
TTGCAATGAGTATACATGCA+AGG - chr3_3:85145268-85145287 None:intergenic 35.0%
!! TTGCAATTTCATTTTGGCAG+TGG + chr3_3:85145282-85145301 Msa0479970:intron 35.0%
!! TGCAATTTCATTTTGGCAGT+GGG + chr3_3:85145283-85145302 Msa0479970:intron 35.0%
CTTTGCTTACATCCATACAA+CGG - chr3_3:85145427-85145446 None:intergenic 35.0%
CACATAAGAAACTCTTTGCA+AGG - chr3_3:85145497-85145516 None:intergenic 35.0%
! TGATGATGTAGTTAGAGGAA+TGG - chr3_3:85145652-85145671 None:intergenic 35.0%
!! CACTTTGATGATGTAGTTAG+AGG - chr3_3:85145657-85145676 None:intergenic 35.0%
CTCTAACTACATCATCAAAG+TGG + chr3_3:85145655-85145674 Msa0479970:intron 35.0%
!!! GGGCTGATTTTTTTTCTTTC+AGG + chr3_3:85146035-85146054 Msa0479970:intron 35.0%
GATGGAAAATTACTTGCAAG+TGG + chr3_3:85146128-85146147 Msa0479970:CDS 35.0%
TGCATTACATGAAAATCAGG+AGG - chr3_3:85146319-85146338 None:intergenic 35.0%
! TCCTGATTTTCATGTAATGC+AGG + chr3_3:85146318-85146337 Msa0479970:intron 35.0%
ATGTAATGCAGGCTGTTATA+TGG + chr3_3:85146329-85146348 Msa0479970:intron 35.0%
TTCATTCGACAAAACTGTCA+GGG + chr3_3:85146450-85146469 Msa0479970:CDS 35.0%
GTATGTTACTCAAAACCCTT+TGG - chr3_3:85146563-85146582 None:intergenic 35.0%
ACATACTATGCACATCACAA+TGG + chr3_3:85146577-85146596 Msa0479970:intron 35.0%
TGGTATCCCAAAATAAGTGT+TGG - chr3_3:85146875-85146894 None:intergenic 35.0%
!!! TATTTTGGGATACCAGCAAT+TGG + chr3_3:85146880-85146899 Msa0479970:intron 35.0%
GTAGTCTATGCATAAGTTTG+TGG + chr3_3:85146987-85147006 Msa0479970:intron 35.0%
! GTATTCTCTTCGCACTTTTA+CGG + chr3_3:85147220-85147239 Msa0479970:CDS 35.0%
! TATTCTCTTCGCACTTTTAC+GGG + chr3_3:85147221-85147240 Msa0479970:CDS 35.0%
GATCTTATATGTTCGTGTGA+TGG + chr3_3:85147290-85147309 Msa0479970:CDS 35.0%
! TGCAAAGCATCTTGTACAAA+GGG - chr3_3:85147413-85147432 None:intergenic 35.0%
TAGAAGATAAAGGCCATCTA+GGG - chr3_3:85147437-85147456 None:intergenic 35.0%
ATAGAAGATAAAGGCCATCT+AGG - chr3_3:85147438-85147457 None:intergenic 35.0%
TAATACGCAAGCTACAAAAC+AGG - chr3_3:85147474-85147493 None:intergenic 35.0%
!! AATTTTCTTGTTGGTTAGGG+TGG + chr3_3:85147501-85147520 Msa0479970:intron 35.0%
TATACTTGATGTGGAAACAC+AGG + chr3_3:85147593-85147612 Msa0479970:CDS 35.0%
TGATGGTTTAATTACTGCCT+TGG + chr3_3:85148155-85148174 Msa0479970:CDS 35.0%
AATTAATCCAAGCTGAGTTC+AGG + chr3_3:85148434-85148453 Msa0479970:three_prime_UTR 35.0%
AGCACCCAACCCAATTTATA+AGG - chr3_3:85144109-85144128 None:intergenic 40.0%
AATAAGCAATTTGCGGACAG+GGG - chr3_3:85144502-85144521 None:intergenic 40.0%
CTAATAAGCAATTTGCGGAC+AGG - chr3_3:85144504-85144523 None:intergenic 40.0%
!! TTTCCAAGGTAACTGATTCG+AGG + chr3_3:85144543-85144562 Msa0479970:intron 40.0%
TTAGTTCACACGAGTCAAAG+TGG + chr3_3:85144808-85144827 Msa0479970:intron 40.0%
TTATGAGTAAGGGAAAGGGA+AGG + chr3_3:85144878-85144897 Msa0479970:intron 40.0%
! CCCTAGTTGTTGGTTGAAAT+TGG + chr3_3:85144952-85144971 Msa0479970:intron 40.0%
TAGTCCTACTCTTCCATTAC+AGG - chr3_3:85145008-85145027 None:intergenic 40.0%
TCAGTGCTAAACATCATGAG+AGG - chr3_3:85145160-85145179 None:intergenic 40.0%
! CTCATGATGTTTAGCACTGA+TGG + chr3_3:85145160-85145179 Msa0479970:intron 40.0%
TACATCACCTTCAAACCAGT+TGG + chr3_3:85145194-85145213 Msa0479970:intron 40.0%
!!! TGGTGAGTTGCTTTTATACG+CGG + chr3_3:85145214-85145233 Msa0479970:intron 40.0%
TACGCGGTTTAATTGATGGA+AGG + chr3_3:85145230-85145249 Msa0479970:intron 40.0%
!! ATTTTGGCAGTGGGATGATA+AGG + chr3_3:85145292-85145311 Msa0479970:intron 40.0%
TCTTGAATTGAAGGCTGATG+TGG + chr3_3:85145316-85145335 Msa0479970:CDS 40.0%
CGTTGTATGGATGTAAGCAA+AGG + chr3_3:85145425-85145444 Msa0479970:CDS 40.0%
TCTTTATGCGTGTGTGTTGT+TGG + chr3_3:85145900-85145919 Msa0479970:intron 40.0%
CTCTTTAATTCCTTGACGTG+AGG + chr3_3:85145987-85146006 Msa0479970:intron 40.0%
ATCAGATGAGAAATGGCAAC+AGG - chr3_3:85146111-85146130 None:intergenic 40.0%
! TGTTGCCATTTCTCATCTGA+TGG + chr3_3:85146110-85146129 Msa0479970:CDS 40.0%
GGAAAATTACTTGCAAGTGG+TGG + chr3_3:85146131-85146150 Msa0479970:CDS 40.0%
TGGCCATGACAAAAAGGTTA+GGG + chr3_3:85146151-85146170 Msa0479970:intron 40.0%
! TTCCCCTAACCTTTTTGTCA+TGG - chr3_3:85146157-85146176 None:intergenic 40.0%
GCCTGCATTACATGAAAATC+AGG - chr3_3:85146322-85146341 None:intergenic 40.0%
AATGAAGATGTTGCTAGACG+TGG - chr3_3:85146436-85146455 None:intergenic 40.0%
CTTCATTCGACAAAACTGTC+AGG + chr3_3:85146449-85146468 Msa0479970:CDS 40.0%
TATATGCTTTCTATGCAGCC+TGG + chr3_3:85147197-85147216 Msa0479970:intron 40.0%
ATATGCTTTCTATGCAGCCT+GGG + chr3_3:85147198-85147217 Msa0479970:intron 40.0%
! ATATGTTCGTGTGATGGTGA+TGG + chr3_3:85147296-85147315 Msa0479970:CDS 40.0%
! CGGTATTGGAGCATAAACAA+CGG + chr3_3:85147326-85147345 Msa0479970:CDS 40.0%
CAGTTGTGTTAGAGTCTCTA+AGG + chr3_3:85147349-85147368 Msa0479970:CDS 40.0%
! GCAAAGCATCTTGTACAAAG+GGG - chr3_3:85147412-85147431 None:intergenic 40.0%
! CTGCAAAGCATCTTGTACAA+AGG - chr3_3:85147414-85147433 None:intergenic 40.0%
ACGAGGTTGAAATCTCATCT+GGG - chr3_3:85147532-85147551 None:intergenic 40.0%
ATGAGATTTCAACCTCGTCT+AGG + chr3_3:85147534-85147553 Msa0479970:CDS 40.0%
TGAGATTTCAACCTCGTCTA+GGG + chr3_3:85147535-85147554 Msa0479970:CDS 40.0%
CATCGTGTCTATACTTGATG+TGG + chr3_3:85147584-85147603 Msa0479970:CDS 40.0%
GGCATGCCGATATTCATTAA+AGG + chr3_3:85147614-85147633 Msa0479970:CDS 40.0%
TTCTGTATGTTGGGATCCAT+CGG + chr3_3:85147810-85147829 Msa0479970:CDS 40.0%
TCAGGATTTGGACTCTTGAA+GGG + chr3_3:85147866-85147885 Msa0479970:CDS 40.0%
GTTCATGAGCTTAGCTGTAA+TGG + chr3_3:85147895-85147914 Msa0479970:CDS 40.0%
GGTACATGTTGTGTAGTCAT+TGG + chr3_3:85148086-85148105 Msa0479970:intron 40.0%
ATGACTTTGTCTGCTCATGA+TGG + chr3_3:85148138-85148157 Msa0479970:CDS 40.0%
TGGTTTAATTACTGCCTTGG+CGG + chr3_3:85148158-85148177 Msa0479970:CDS 40.0%
ATTTACAGTTGAAACCGCCA+AGG - chr3_3:85148175-85148194 None:intergenic 40.0%
TTGGCGGTTTCAACTGTAAA+TGG + chr3_3:85148174-85148193 Msa0479970:CDS 40.0%
ACGACAAGTTCATCAAGCTT+TGG + chr3_3:85148217-85148236 Msa0479970:CDS 40.0%
! GTATCGCGAGTATTGTCAAT+CGG - chr3_3:85148271-85148290 None:intergenic 40.0%
! CATAGGTTAGTCCAAAAGAG+TGG - chr3_3:85148375-85148394 None:intergenic 40.0%
GAAGCTGAGGTCCGTTAATA+AGG - chr3_3:85144035-85144054 None:intergenic 45.0%
TGGCTTTCCGATGCTCAATT+CGG + chr3_3:85144074-85144093 Msa0479970:intron 45.0%
! ACGCATACATAAGGGTGTGT+GGG - chr3_3:85144133-85144152 None:intergenic 45.0%
! AACGCATACATAAGGGTGTG+TGG - chr3_3:85144134-85144153 None:intergenic 45.0%
! GGTATAGGGTGCGTTTGTTT+TGG - chr3_3:85144481-85144500 None:intergenic 45.0%
! AATTTGCGGACAGGGGTATA+GGG - chr3_3:85144495-85144514 None:intergenic 45.0%
TCACCTCGAATCAGTTACCT+TGG - chr3_3:85144549-85144568 None:intergenic 45.0%
CGAGACATTTAGATGTACGG+AGG + chr3_3:85144589-85144608 Msa0479970:intron 45.0%
GTACGGAGGATGATAGATGA+AGG + chr3_3:85144603-85144622 Msa0479970:intron 45.0%
GCTTTACAACCCCTAGTTGT+TGG + chr3_3:85144942-85144961 Msa0479970:intron 45.0%
!! CAACTCACCAACTGGTTTGA+AGG - chr3_3:85145204-85145223 None:intergenic 45.0%
! TTTTAGCGTGTAACTCGCTG+TGG + chr3_3:85145766-85145785 Msa0479970:intron 45.0%
AATTCCTTGACGTGAGGCAA+TGG + chr3_3:85145993-85146012 Msa0479970:intron 45.0%
TGGCACAGATTCAGAAGCTA+TGG + chr3_3:85146013-85146032 Msa0479970:intron 45.0%
GGCACAGATTCAGAAGCTAT+GGG + chr3_3:85146014-85146033 Msa0479970:intron 45.0%
GCACAGATTCAGAAGCTATG+GGG + chr3_3:85146015-85146034 Msa0479970:intron 45.0%
AAGTGGTGGCCATGACAAAA+AGG + chr3_3:85146145-85146164 Msa0479970:CDS 45.0%
GTGGCCATGACAAAAAGGTT+AGG + chr3_3:85146150-85146169 Msa0479970:intron 45.0%
GGCCATGACAAAAAGGTTAG+GGG + chr3_3:85146152-85146171 Msa0479970:intron 45.0%
TGTGCAATTGTCCTGCTTGA+AGG + chr3_3:85146233-85146252 Msa0479970:intron 45.0%
GCAGGCTGTTATATGGTATG+CGG + chr3_3:85146336-85146355 Msa0479970:intron 45.0%
TCGACAAAACTGTCAGGGTT+TGG + chr3_3:85146455-85146474 Msa0479970:CDS 45.0%
CGACAAAACTGTCAGGGTTT+GGG + chr3_3:85146456-85146475 Msa0479970:CDS 45.0%
AAAGTGCGAAGAGAATACCC+AGG - chr3_3:85147218-85147237 None:intergenic 45.0%
!! GTGATGGTGATGGTGAGATA+CGG + chr3_3:85147306-85147325 Msa0479970:CDS 45.0%
! GTGATGGTGAGATACGGTAT+TGG + chr3_3:85147312-85147331 Msa0479970:CDS 45.0%
GACGAGGTTGAAATCTCATC+TGG - chr3_3:85147533-85147552 None:intergenic 45.0%
TCTGTATGTTGGGATCCATC+GGG + chr3_3:85147811-85147830 Msa0479970:CDS 45.0%
GTCAGGATTTGGACTCTTGA+AGG + chr3_3:85147865-85147884 Msa0479970:CDS 45.0%
CAGGATTTGGACTCTTGAAG+GGG + chr3_3:85147867-85147886 Msa0479970:CDS 45.0%
AACCAATGACGAGCAGTGAA+GGG - chr3_3:85147957-85147976 None:intergenic 45.0%
AATAAAGACGTGGACTTGCC+TGG - chr3_3:85147984-85148003 None:intergenic 45.0%
TTGTGTAGTCATTGGAGCTG+TGG + chr3_3:85148094-85148113 Msa0479970:intron 45.0%
CTTGATGAACTTGTCGTGAC+TGG - chr3_3:85148214-85148233 None:intergenic 45.0%
ACAATACTCGCGATACAGTC+AGG + chr3_3:85148275-85148294 Msa0479970:three_prime_UTR 45.0%
TTAGTCCAAAAGAGTGGAGG+CGG - chr3_3:85148369-85148388 None:intergenic 45.0%
! AGGTTAGTCCAAAAGAGTGG+AGG - chr3_3:85148372-85148391 None:intergenic 45.0%
AAGTCTACCTGAACTCAGCT+TGG - chr3_3:85148444-85148463 None:intergenic 45.0%
!!! ACAAAATAATAAAATTTTAT+TGG - chr3_3:85145620-85145639 None:intergenic 5.0%
CCTGACTCCGAATTGAGCAT+CGG - chr3_3:85144084-85144103 None:intergenic 50.0%
! CGCATACATAAGGGTGTGTG+GGG - chr3_3:85144132-85144151 None:intergenic 50.0%
! CAATTTGCGGACAGGGGTAT+AGG - chr3_3:85144496-85144515 None:intergenic 50.0%
TGGATCGCTTTGTGGACGAT+GGG + chr3_3:85145336-85145355 Msa0479970:CDS 50.0%
ACGGATCCTAGAGATCCTGT+TGG + chr3_3:85145401-85145420 Msa0479970:CDS 50.0%
AGATCCTGTTGGCCGTTGTA+TGG + chr3_3:85145412-85145431 Msa0479970:CDS 50.0%
ACATCCATACAACGGCCAAC+AGG - chr3_3:85145419-85145438 None:intergenic 50.0%
GACATGACGCAGCAAAGTAG+CGG + chr3_3:85145679-85145698 Msa0479970:intron 50.0%
CGTGTAACTCGCTGTGGTAA+TGG + chr3_3:85145772-85145791 Msa0479970:intron 50.0%
GTGGCATGCTTGCACTGAAA+CGG - chr3_3:85146417-85146436 None:intergenic 50.0%
AGATGCTTTGCAGCCCTAGA+TGG + chr3_3:85147421-85147440 Msa0479970:intron 50.0%
GATTTCAACCTCGTCTAGGG+AGG + chr3_3:85147538-85147557 Msa0479970:CDS 50.0%
! TGTTTTCAGCTGCTGCAGCA+AGG - chr3_3:85147566-85147585 None:intergenic 50.0%
ATTGCTGGCATCTGTGAGTG+AGG + chr3_3:85147837-85147856 Msa0479970:CDS 50.0%
GTGAGGACTCTGTCAGGATT+TGG + chr3_3:85147854-85147873 Msa0479970:CDS 50.0%
GCAGTGAAGGGAATGTTGGA+TGG - chr3_3:85147945-85147964 None:intergenic 50.0%
ACGAGCAGTGAAGGGAATGT+TGG - chr3_3:85147949-85147968 None:intergenic 50.0%
TTCCCTTCACTGCTCGTCAT+TGG + chr3_3:85147952-85147971 Msa0479970:intron 50.0%
CAACCAATGACGAGCAGTGA+AGG - chr3_3:85147958-85147977 None:intergenic 50.0%
! GCTCGTCATTGGTTGTTACC+AGG + chr3_3:85147963-85147982 Msa0479970:intron 50.0%
GTCATTGGAGCTGTGGAACA+TGG + chr3_3:85148101-85148120 Msa0479970:intron 50.0%
CCGATGCTCAATTCGGAGTC+AGG + chr3_3:85144081-85144100 Msa0479970:intron 55.0%
GGCTGATGTGGATCGCTTTG+TGG + chr3_3:85145328-85145347 Msa0479970:CDS 55.0%
GTGGATCGCTTTGTGGACGA+TGG + chr3_3:85145335-85145354 Msa0479970:CDS 55.0%
CAACGGCCAACAGGATCTCT+AGG - chr3_3:85145410-85145429 None:intergenic 55.0%
! TGTGCCATTGCCTCACGTCA+AGG - chr3_3:85146000-85146019 None:intergenic 55.0%
AGAGTGGCACGCTTCAAGAC+TGG - chr3_3:85146612-85146631 None:intergenic 55.0%
GGATCCATCGGGAGAATTGC+TGG + chr3_3:85147822-85147841 Msa0479970:CDS 55.0%
GATGCCAGCAATTCTCCCGA+TGG - chr3_3:85147829-85147848 None:intergenic 55.0%
CTGTGAGTGAGGACTCTGTC+AGG + chr3_3:85147848-85147867 Msa0479970:CDS 55.0%
TCCAAAAGAGTGGAGGCGGT+GGG - chr3_3:85148365-85148384 None:intergenic 55.0%
! GCAAGGTACCTCCCTAGACG+AGG - chr3_3:85147549-85147568 None:intergenic 60.0%
! ACCCACCGCCTCCACTCTTT+TGG + chr3_3:85148361-85148380 Msa0479970:three_prime_UTR 60.0%
GTCCAAAAGAGTGGAGGCGG+TGG - chr3_3:85148366-85148385 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85143995 85148545 85143995 ID=Msa0479970;Name=Msa0479970
chr3_3 mRNA 85143995 85148545 85143995 ID=Msa0479970-mRNA-1;Parent=Msa0479970;Name=Msa0479970-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.57|0.62|0.87|0.85|0.75|8|300|335
chr3_3 exon 85143995 85144003 85143995 ID=Msa0479970-mRNA-1:exon:24326;Parent=Msa0479970-mRNA-1
chr3_3 exon 85145302 85145446 85145302 ID=Msa0479970-mRNA-1:exon:24327;Parent=Msa0479970-mRNA-1
chr3_3 exon 85146057 85146166 85146057 ID=Msa0479970-mRNA-1:exon:24328;Parent=Msa0479970-mRNA-1
chr3_3 exon 85146340 85146489 85146340 ID=Msa0479970-mRNA-1:exon:24329;Parent=Msa0479970-mRNA-1
chr3_3 exon 85147215 85147370 85147215 ID=Msa0479970-mRNA-1:exon:24330;Parent=Msa0479970-mRNA-1
chr3_3 exon 85147519 85147635 85147519 ID=Msa0479970-mRNA-1:exon:24331;Parent=Msa0479970-mRNA-1
chr3_3 exon 85147790 85147966 85147790 ID=Msa0479970-mRNA-1:exon:24332;Parent=Msa0479970-mRNA-1
chr3_3 exon 85148102 85148545 85148102 ID=Msa0479970-mRNA-1:exon:24333;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85143995 85144003 85143995 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85145302 85145446 85145302 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85146057 85146166 85146057 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85146340 85146489 85146340 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85147215 85147370 85147215 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85147519 85147635 85147519 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85147790 85147966 85147790 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 CDS 85148102 85148245 85148102 ID=Msa0479970-mRNA-1:cds;Parent=Msa0479970-mRNA-1
chr3_3 three_prime_UTR 85148246 85148545 85148246 ID=Msa0479970-mRNA-1:three_prime_utr;Parent=Msa0479970-mRNA-1
Gene Sequence

>Msa0479970

ATGGAAAAGTGGGATGATAAGGATCTTGAATTGAAGGCTGATGTGGATCGCTTTGTGGACGATGGGTCTTTAGATGATAATGTAGAGTCTTTTTTATCGCAAGATGATACGGATCCTAGAGATCCTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTATGCGGATTCACTAAAACAAAAAGCTATTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTGCAAGCATGCCACGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACTTTTACGGGACATTCTACATCTGTCATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATATGTTCGTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAACGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCTGAAAACATCGTGTCTATACTTGATGTGGAAACACAGGCATGCCGATATTCATTAAAGGGTCACACAAAGACAATAGATTCTGTATGTTGGGATCCATCGGGAGAATTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGATTTGGACTCTTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTCCCTTCACTGCTCTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTAGTTGCTTCTGCCAGTCACGACAAGTTCATCAAGCTTTGGAAGTAA

Protein sequence

>Msa0479970

MEKWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSSLITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTLEGECVHELSCNGSKFHSCVFHPTFPSLLSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK*