AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0558230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558230 MtrunA17_Chr4g0047751 93.062 418 2 2 1 418 1 391 0.0 788
Msa0558230 MtrunA17_Chr4g0047751 84.475 219 19 1 505 723 376 579 3.99e-85 280
Msa0558230 MtrunA17_Chr2g0282041 77.619 420 52 4 1 418 1 380 0.0 639
Msa0558230 MtrunA17_Chr2g0282041 77.835 194 25 4 521 711 381 559 5.51e-62 218
Msa0558230 MtrunA17_Chr2g0313531 56.593 182 60 3 1 180 1 165 5.21e-45 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558230 AT4G21660.1 73.270 419 77 6 5 418 8 396 0.0 568
Msa0558230 AT4G21660.1 75.904 166 38 1 521 686 397 560 1.12e-59 212
Msa0558230 AT4G21660.2 70.901 433 77 7 5 418 8 410 0.0 557
Msa0558230 AT4G21660.2 75.904 166 38 1 521 686 411 574 2.05e-59 211
Msa0558230 AT4G21660.3 81.643 207 15 1 212 418 307 490 3.73e-113 357
Msa0558230 AT4G21660.3 64.220 218 68 4 2 214 3 215 1.44e-61 219
Msa0558230 AT4G21660.3 75.904 166 38 1 521 686 491 654 6.17e-59 212
Msa0558230 AT1G11520.1 72.807 114 28 2 560 672 85 196 2.90e-45 160

Find 205 sgRNAs with CRISPR-Local

Find 626 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCGGGCGTCCACTTTA+TGG 0.179680 4_1:+56826899 Msa0558230:CDS
TTCCAGGTTGATTTGCTTAA+AGG 0.222619 4_1:+56829555 Msa0558230:intron
CTGACACGTTCTTCTGTATA+AGG 0.229368 4_1:-56830385 None:intergenic
GAAGATGGATATTGATTATC+AGG 0.250368 4_1:+56825681 Msa0558230:CDS
GCGGCCATCGTTGCGGGATT+TGG 0.258522 4_1:-56822603 None:intergenic
TTGGTTATCATCCTGGTGGC+TGG 0.271971 4_1:+56826705 Msa0558230:CDS
GGCGCGTGTAAGAAAGTTAT+TGG 0.282146 4_1:-56822507 None:intergenic
GTCTGCATCTTGAGCAGTTC+GGG 0.294396 4_1:+56826885 Msa0558230:CDS
ACTTGATAAAGAGGCCTTTC+AGG 0.294843 4_1:-56829150 None:intergenic
GTTTCTGCGGCCATCGTTGC+GGG 0.296608 4_1:-56822609 None:intergenic
AAGACAAGTCAGGGGCAAAA+AGG 0.303775 4_1:+56829444 Msa0558230:CDS
CAAGACATATGCATCCCTTT+TGG 0.313100 4_1:-56830514 None:intergenic
TGTAAACCAACCTCATAATT+AGG 0.313993 4_1:-56826953 None:intergenic
AAATGCAATTACAAAGAAAA+AGG 0.325108 4_1:+56823971 Msa0558230:CDS
GAAAATCAACAAAGCCTCTA+AGG 0.336747 4_1:+56822740 Msa0558230:CDS
AGTCTCAAACAAGAAGAAAA+AGG 0.338769 4_1:+56824046 Msa0558230:CDS
CAGTGTTTCTACAGGTGTTA+TGG 0.344990 4_1:-56827877 None:intergenic
AAGTTCCACTTTGCAATTAG+AGG 0.345577 4_1:+56826979 Msa0558230:CDS
CCCGTGCGATGGAGAGTTAC+AGG 0.350532 4_1:-56822543 None:intergenic
ATGATTTACATCTTATGTTC+TGG 0.352585 4_1:+56830461 Msa0558230:three_prime_UTR
CTTGCTCCTGGAACTTTGCT+TGG 0.355394 4_1:+56829280 Msa0558230:CDS
GTCGTTTCCAACGGAGATCT+TGG 0.362403 4_1:+56822651 Msa0558230:CDS
TTACACAAGAGGCTGTTTCC+AGG 0.378319 4_1:-56829958 None:intergenic
TGACTTGGAAGAGGAGGAAG+AGG 0.383213 4_1:+56828600 Msa0558230:CDS
TATTCAAACATCAGTGGTAC+TGG 0.383824 4_1:+56827560 Msa0558230:CDS
AGAGGAAGAAGAGGAGGAAG+AGG 0.388573 4_1:+56828633 Msa0558230:CDS
AGCCAAAGCTGTCATCTCTT+GGG 0.389562 4_1:+56825861 Msa0558230:CDS
TGGTTATCATCCTGGTGGCT+GGG 0.397033 4_1:+56826706 Msa0558230:CDS
GTTAGCGTTTGGTTCCTTAG+AGG 0.403156 4_1:-56822754 None:intergenic
ATGACAGCTTTGGCTTTGTC+TGG 0.409816 4_1:-56825853 None:intergenic
AAGAAGTCAATGAAGTGAAA+AGG 0.410026 4_1:-56826857 None:intergenic
TTCAAGAATACCAACAACTT+TGG 0.411732 4_1:-56824380 None:intergenic
TGTCTGCATCTTGAGCAGTT+CGG 0.412182 4_1:+56826884 Msa0558230:CDS
GGTAGATAAAACAAAACATT+GGG 0.413170 4_1:+56828576 Msa0558230:CDS
AAGCCAAAGCTGTCATCTCT+TGG 0.416693 4_1:+56825860 Msa0558230:CDS
CACCTGTAGAAACACTGTTT+TGG 0.417377 4_1:+56827883 Msa0558230:CDS
CACTTTACTGCCAGAGGAGT+TGG 0.419852 4_1:+56829602 Msa0558230:CDS
TCTTCGGAGGCGTTAGCGTT+TGG 0.427503 4_1:-56822765 None:intergenic
AGAAGTCAATGAAGTGAAAA+GGG 0.428583 4_1:-56826856 None:intergenic
AACTCATGTGATAACATGCC+AGG 0.430534 4_1:-56826468 None:intergenic
TTCAGCAGATCCAAAGTTGT+TGG 0.431447 4_1:+56824370 Msa0558230:CDS
ATCCAAGTATGTCTCATTAA+CGG 0.432808 4_1:-56830440 None:intergenic
CAATGTGTTGCTTGGAGTTA+CGG 0.433164 4_1:+56827839 Msa0558230:CDS
GGAGGAAGAAGAGGAAGAAG+AGG 0.435633 4_1:+56828624 Msa0558230:CDS
CAAGGGAGGAAGAGAAATTA+CGG 0.439241 4_1:+56829753 Msa0558230:CDS
AACAAAACATTGGGGTGACT+TGG 0.439536 4_1:+56828585 Msa0558230:CDS
GCGCGTGTAAGAAAGTTATT+GGG 0.444930 4_1:-56822506 None:intergenic
ACGGGCACCCAAGACAAGTC+AGG 0.445877 4_1:+56829434 Msa0558230:CDS
GGAAGAGGAGGAGGAAGAAG+AGG 0.449096 4_1:+56828615 Msa0558230:CDS
TCCCCAAGAGATGACAGCTT+TGG 0.450747 4_1:-56825863 None:intergenic
AAGGTCACGGGTTCAAGTCC+TGG 0.451424 4_1:+56829940 Msa0558230:intron
TTCCATGAGCAGCAGAGGAT+TGG 0.452921 4_1:+56830254 Msa0558230:three_prime_UTR
AGTTCCACTTTGCAATTAGA+GGG 0.453116 4_1:+56826980 Msa0558230:CDS
GGTTATCATCCTGGTGGCTG+GGG 0.453641 4_1:+56826707 Msa0558230:CDS
AGCCAATCCTCTGCTGCTCA+TGG 0.457489 4_1:-56830256 None:intergenic
GGAAGAGGAGGAAGAGGAGG+AGG 0.457668 4_1:+56828606 Msa0558230:CDS
CTCCGACAGTCGACAGTAGC+AGG 0.458381 4_1:-56827761 None:intergenic
TCCATTTCTCTCCAGTTATG+TGG 0.459234 4_1:+56829406 Msa0558230:intron
CTTGGAGTTACGGTCCCTAC+AGG 0.461222 4_1:+56827849 Msa0558230:CDS
ATAAAATCAGGAAGCTGAAA+AGG 0.461748 4_1:-56824990 None:intergenic
ATACCAACCTCGACAACATC+AGG 0.464230 4_1:-56824209 None:intergenic
CAAGTTGCTAAACACAGAAA+TGG 0.464641 4_1:+56822483 Msa0558230:five_prime_UTR
GTTACAGGAAGAATTCAGTT+AGG 0.466191 4_1:-56822528 None:intergenic
GAATGGGAGCATTCAAGCCG+GGG 0.467719 4_1:-56826667 None:intergenic
AGCAGAGCTATATGAAGGCT+TGG 0.468590 4_1:+56823779 Msa0558230:CDS
GAAAGACTCACTTGATAAAG+AGG 0.469037 4_1:-56829159 None:intergenic
CTCCAGTTATGTGGTTGGCA+CGG 0.469111 4_1:+56829415 Msa0558230:intron
GTAGTTCCAAGCAAAGTTCC+AGG 0.471231 4_1:-56829286 None:intergenic
ATTTGGTCGGATTCACGAAT+GGG 0.472463 4_1:-56822586 None:intergenic
CATTTACCTGCAAAATAAAG+AGG 0.473109 4_1:-56830193 None:intergenic
CCTGTGGCAGCAATAAAATC+AGG 0.473988 4_1:-56825002 None:intergenic
GCAAGATCAGCCTAATTATG+AGG 0.475324 4_1:+56826943 Msa0558230:CDS
TCCAGTTATGTGGTTGGCAC+GGG 0.478302 4_1:+56829416 Msa0558230:intron
TGACACCAGTGCCTGGGTAC+AGG 0.479653 4_1:-56824422 None:intergenic
ACAACAACACCAACAACAAC+AGG 0.480064 4_1:+56822821 Msa0558230:CDS
GGAATGGGAGCATTCAAGCC+GGG 0.481313 4_1:-56826668 None:intergenic
AGAATGAGAAGAAGAGGAAG+AGG 0.486246 4_1:+56830110 Msa0558230:intron
GGGAATGGGAGCATTCAAGC+CGG 0.489352 4_1:-56826669 None:intergenic
CCATCGTTGCGGGATTTGGT+CGG 0.491412 4_1:-56822599 None:intergenic
TGATAACCAAAACTAGCTCC+TGG 0.491641 4_1:-56826692 None:intergenic
GGAAGAAGACATCGAGGAGG+AGG 0.492383 4_1:+56828654 Msa0558230:CDS
TGATGCAGAATGAGAAGAAG+AGG 0.492413 4_1:+56830104 Msa0558230:intron
AAAGTTGAAACAAAAGCAAC+GGG 0.492868 4_1:+56825636 Msa0558230:CDS
TTTCTCTCCAGTTATGTGGT+TGG 0.493505 4_1:+56829410 Msa0558230:intron
GGAAGAAGAGGAAGAAGAGG+AGG 0.494055 4_1:+56828627 Msa0558230:CDS
GCGACCGTCGTCGCCGTCGC+CGG 0.496606 4_1:+56822709 Msa0558230:CDS
ATTCATTCTCCAGTGAAAAG+AGG 0.496758 4_1:+56827613 Msa0558230:CDS
TTTGGAGCCAAGATCTCCGT+TGG 0.497901 4_1:-56822658 None:intergenic
GATCAGCCTAATTATGAGGT+TGG 0.500033 4_1:+56826947 Msa0558230:CDS
TGGGTACAGGTACAGTATTT+CGG 0.500237 4_1:-56824409 None:intergenic
GTGTGATGAGGGTAAAGATC+AGG 0.500423 4_1:+56827796 Msa0558230:CDS
TCCATGACATCCAACTCCTC+TGG 0.503135 4_1:-56829612 None:intergenic
GCCAGAGGAGTTGGATGTCA+TGG 0.505402 4_1:+56829611 Msa0558230:CDS
GGAGGCTTGCCCCAGCCACC+AGG 0.505676 4_1:-56826716 None:intergenic
GTGTTATGGTCTCTCCTGTA+GGG 0.510568 4_1:-56827863 None:intergenic
TATCTAGGATAATGATAAGA+AGG 0.513629 4_1:+56823935 Msa0558230:intron
ATCTTCAGAGAAGGGTATGA+TGG 0.513760 4_1:-56826644 None:intergenic
AGATGAGAACCTGTTGTTGT+TGG 0.518447 4_1:-56822830 None:intergenic
TGGCACTGCAATGTGTTGCT+TGG 0.519023 4_1:+56827831 Msa0558230:CDS
CACCAAAACAGTGTTTCTAC+AGG 0.521650 4_1:-56827885 None:intergenic
ATCCGTTAATGAGACATACT+TGG 0.521806 4_1:+56830438 Msa0558230:three_prime_UTR
CAGCGAGGTTATTGATTCAG+AGG 0.524730 4_1:+56823839 Msa0558230:CDS
GATTTGGTCGGATTCACGAA+TGG 0.524887 4_1:-56822587 None:intergenic
CTTGGAAGAGGAGGAAGAGG+AGG 0.526037 4_1:+56828603 Msa0558230:CDS
CGTTTCTGCGGCCATCGTTG+CGG 0.527700 4_1:-56822610 None:intergenic
AATTAGGCTGATCTTGCTGA+TGG 0.532430 4_1:-56826937 None:intergenic
CGGGCACCCAAGACAAGTCA+GGG 0.533145 4_1:+56829435 Msa0558230:CDS
TCAAAAGAGAAAATTTCTGC+AGG 0.533803 4_1:+56824442 Msa0558230:CDS
GAGGGTGGGTTCCCGTGCGA+TGG 0.534032 4_1:-56822554 None:intergenic
TCATGAAGGAAAAGAATTTG+AGG 0.534425 4_1:+56825892 Msa0558230:CDS
GGTGTTATGGTCTCTCCTGT+AGG 0.535629 4_1:-56827864 None:intergenic
GCTTCCGGCGACGGCGACGA+CGG 0.537767 4_1:-56822713 None:intergenic
TTACGAAGGTCAATAACATC+AGG 0.537927 4_1:-56829111 None:intergenic
AAGTTGAGGGAGATGAAACC+TGG 0.539261 4_1:+56826450 Msa0558230:CDS
TCCTGTAACTCTCCATCGCA+CGG 0.539371 4_1:+56822542 Msa0558230:five_prime_UTR
GCTATATGAAGGCTTGGATG+AGG 0.545895 4_1:+56823785 Msa0558230:CDS
TACCCTTCTCTGAAGATCCC+CGG 0.547560 4_1:+56826650 Msa0558230:CDS
TACTTAGTTCTGTGTGATGA+GGG 0.548639 4_1:+56827785 Msa0558230:CDS
GAGGAGGAGGCACTTGAAGA+TGG 0.549207 4_1:+56828667 Msa0558230:CDS
CTGTACCTGTACCCAGGCAC+TGG 0.549555 4_1:+56824417 Msa0558230:CDS
TCCGTGGCTTATTAACATGC+AGG 0.549813 4_1:+56826527 Msa0558230:CDS
CATGAGTTGAAAGAAGCTCT+TGG 0.550562 4_1:+56826483 Msa0558230:CDS
TGAAGGACATTGTACACGGC+TGG 0.553486 4_1:+56827534 Msa0558230:intron
ACCCTGCTACTGTCGACTGT+CGG 0.560471 4_1:+56827759 Msa0558230:CDS
CGCACGGGAACCCACCCTCT+CGG 0.561029 4_1:+56822558 Msa0558230:five_prime_UTR
TTACTTAGTTCTGTGTGATG+AGG 0.561981 4_1:+56827784 Msa0558230:CDS
CGCAAGGCCTGATGTTGTCG+AGG 0.562446 4_1:+56824202 Msa0558230:CDS
GGGCAAGCCTCCTGTTGATG+AGG 0.562702 4_1:+56826727 Msa0558230:CDS
AAAGGGATGCATATGTCTTG+TGG 0.563021 4_1:+56830517 Msa0558230:three_prime_UTR
CTTGGGGACTTGTATCATGA+AGG 0.563151 4_1:+56825878 Msa0558230:CDS
CACGGAGGAGGAGAACCCTC+AGG 0.564156 4_1:-56826510 None:intergenic
TCTCACAATGCAGGAAGAGC+CGG 0.564626 4_1:+56828555 Msa0558230:intron
GCAGGCTTATATTGAGAAAG+AGG 0.564885 4_1:+56825606 Msa0558230:intron
AGTTGAAATTGAGTATGTAC+CGG 0.570225 4_1:+56823752 Msa0558230:CDS
CCTTCCTCTGCTCCTTACGA+AGG 0.570728 4_1:-56829125 None:intergenic
ACATTGGGGTGACTTGGAAG+AGG 0.570852 4_1:+56828591 Msa0558230:CDS
GGCAGACTCTGATTCTGAAG+AGG 0.573433 4_1:+56823992 Msa0558230:CDS
TTTGTGTTCAGCTTCAACGC+AGG 0.573485 4_1:+56824150 Msa0558230:intron
TGATGTTATTGACCTTCGTA+AGG 0.573751 4_1:+56829113 Msa0558230:CDS
GATAACCAAAACTAGCTCCT+GGG 0.574197 4_1:-56826691 None:intergenic
ACCTGCATGTTAATAAGCCA+CGG 0.574698 4_1:-56826528 None:intergenic
TGCTGTGCAGGTAAAGTTGA+GGG 0.575661 4_1:+56826437 Msa0558230:intron
GCCAAAGCTGTCATCTCTTG+GGG 0.575826 4_1:+56825862 Msa0558230:CDS
AAAAGTTGAAACAAAAGCAA+CGG 0.576402 4_1:+56825635 Msa0558230:CDS
GCGTGAGGATTTCAGTGACA+TGG 0.578706 4_1:+56829781 Msa0558230:CDS
ATGTTAATAAGCCACGGAGG+AGG 0.579470 4_1:-56826522 None:intergenic
AGAGAAGGGTATGATGGTGG+AGG 0.580603 4_1:-56826638 None:intergenic
AGGTCAAAAGACAGATAGAG+TGG 0.585081 4_1:+56829575 Msa0558230:CDS
GAAACGCTAGTGCATCAAAA+CGG 0.585607 4_1:+56822627 Msa0558230:CDS
AGGAATTGAGAAAATCAGAC+AGG 0.586031 4_1:+56825022 Msa0558230:CDS
ATTCAAACATCAGTGGTACT+GGG 0.587907 4_1:+56827561 Msa0558230:CDS
ATTCCAGGTATAATGAAGCA+AGG 0.588332 4_1:+56829735 Msa0558230:intron
CGGTAGATAAAACAAAACAT+TGG 0.596063 4_1:+56828575 Msa0558230:CDS
AAGCCGGGGATCTTCAGAGA+AGG 0.598863 4_1:-56826653 None:intergenic
TCATGTGACTGAAAGGTCAC+GGG 0.600522 4_1:+56829928 Msa0558230:intron
TTGACCTTCGTAAGGAGCAG+AGG 0.605333 4_1:+56829121 Msa0558230:CDS
TGCTTCAGTATCGTCTTCGG+AGG 0.605349 4_1:-56822778 None:intergenic
AGCTGAAACAGATTAGCGCA+AGG 0.606301 4_1:+56824186 Msa0558230:CDS
TTGTTGAAGGACATTGTACA+CGG 0.606912 4_1:+56827530 Msa0558230:intron
CCGACCAAATCCCGCAACGA+TGG 0.607114 4_1:+56822599 Msa0558230:exon
GAAGTCAATGAAGTGAAAAG+GGG 0.609772 4_1:-56826855 None:intergenic
TTTCAGCACACCGACTGGGG+TGG 0.609891 4_1:+56829083 Msa0558230:intron
TTCCAGGTATAATGAAGCAA+GGG 0.612990 4_1:+56829736 Msa0558230:intron
TAATGATAAGAAGGATGAGT+CGG 0.614751 4_1:+56823944 Msa0558230:CDS
GTTCCACTTTGCAATTAGAG+GGG 0.615223 4_1:+56826981 Msa0558230:CDS
AATGGGATTAACCGAGAGGG+TGG 0.615569 4_1:-56822569 None:intergenic
CAGGTATAATGAAGCAAGGG+AGG 0.616235 4_1:+56829739 Msa0558230:intron
CCTTCGTAAGGAGCAGAGGA+AGG 0.617282 4_1:+56829125 Msa0558230:CDS
TCCGACAGTCGACAGTAGCA+GGG 0.617884 4_1:-56827760 None:intergenic
AGCCGGGGATCTTCAGAGAA+GGG 0.618935 4_1:-56826652 None:intergenic
TTCAGAGAAGGGTATGATGG+TGG 0.620896 4_1:-56826641 None:intergenic
GAAGCTCTTGGTATGCCTGA+GGG 0.621141 4_1:+56826495 Msa0558230:CDS
ATAACCAAAACTAGCTCCTG+GGG 0.621290 4_1:-56826690 None:intergenic
AAGTCAATGAAGTGAAAAGG+GGG 0.621759 4_1:-56826854 None:intergenic
TTGGGGTGACTTGGAAGAGG+AGG 0.622268 4_1:+56828594 Msa0558230:CDS
TTGATGCACTAGCGTTTCTG+CGG 0.622746 4_1:-56822622 None:intergenic
CAAAACGGTGTCGTTTCCAA+CGG 0.624242 4_1:+56822642 Msa0558230:CDS
GGATGTCACTTTACTGCCAG+AGG 0.626847 4_1:+56829596 Msa0558230:CDS
CCTGTAACTCTCCATCGCAC+GGG 0.627813 4_1:+56822543 Msa0558230:five_prime_UTR
AGAAGCTCTTGGTATGCCTG+AGG 0.628417 4_1:+56826494 Msa0558230:CDS
AGCAGAGGAAGGAACCTGAA+AGG 0.633570 4_1:+56829136 Msa0558230:CDS
TTGCTGTGCAGGTAAAGTTG+AGG 0.634564 4_1:+56826436 Msa0558230:intron
CTGAGGGTTCTCCTCCTCCG+TGG 0.646863 4_1:+56826511 Msa0558230:CDS
TTTCAGTGACATGGTTGCTG+AGG 0.651024 4_1:+56829790 Msa0558230:CDS
TCAGGTGTCTCCACCCCAGT+CGG 0.652819 4_1:-56829093 None:intergenic
AGATCAGGACAGATCTTCAG+TGG 0.653924 4_1:+56827811 Msa0558230:CDS
TTGCAGGTAAATGGAAGACG+TGG 0.661332 4_1:+56830203 Msa0558230:three_prime_UTR
AATCTGTTGATAGTATGTCA+AGG 0.663316 4_1:+56828695 Msa0558230:CDS
TTACCCCTCTAATTGCAAAG+TGG 0.664208 4_1:-56826984 None:intergenic
CTACTCATGTGATGATACGA+TGG 0.666091 4_1:+56830359 Msa0558230:three_prime_UTR
AAATGTACCTCATCAACAGG+AGG 0.667002 4_1:-56826734 None:intergenic
GGAAGAGGAAGAAGACATCG+AGG 0.667297 4_1:+56828648 Msa0558230:CDS
ACGAATGGGATTAACCGAGA+GGG 0.668178 4_1:-56822572 None:intergenic
GAAATTACGGAGTCAGCGTG+AGG 0.668821 4_1:+56829766 Msa0558230:CDS
TGGTTCTATTCAAACATCAG+TGG 0.676712 4_1:+56827554 Msa0558230:CDS
ATGGGATTAACCGAGAGGGT+GGG 0.684890 4_1:-56822568 None:intergenic
ACTGGAGAATGAATCAAGTG+AGG 0.687111 4_1:-56827604 None:intergenic
CACGAATGGGATTAACCGAG+AGG 0.689518 4_1:-56822573 None:intergenic
GAAATACTGTACCTGTACCC+AGG 0.689923 4_1:+56824411 Msa0558230:CDS
AGAGGAAGAAGACATCGAGG+AGG 0.690665 4_1:+56828651 Msa0558230:CDS
TGAGAAATTTAGTTTCAGCG+AGG 0.695992 4_1:+56823824 Msa0558230:CDS
GGGCACCCAAGACAAGTCAG+GGG 0.712783 4_1:+56829436 Msa0558230:CDS
GTAGATAAAACAAAACATTG+GGG 0.731406 4_1:+56828577 Msa0558230:CDS
TAACCAAAACTAGCTCCTGG+GGG 0.736524 4_1:-56826689 None:intergenic
TGCATGTTAATAAGCCACGG+AGG 0.791690 4_1:-56826525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTTTTTCATTTTA+AGG + chr4_1:56824334-56824353 Msa0558230:intron 10.0%
!!! ATTTTTTTGTGTAATTTAAT+TGG + chr4_1:56824753-56824772 Msa0558230:intron 10.0%
!!! TTTTTTTGTGTAATTTAATT+GGG + chr4_1:56824754-56824773 Msa0558230:intron 10.0%
!!! TATTTTTCAAATATTTGTAA+AGG + chr4_1:56826091-56826110 Msa0558230:intron 10.0%
!!! AATTTTTTTTTTTTTGTGAA+TGG + chr4_1:56826326-56826345 Msa0558230:intron 10.0%
!! TTTATGTAAAATAATAATCA+TGG + chr4_1:56826784-56826803 Msa0558230:intron 10.0%
!! TTATGTAAAATAATAATCAT+GGG + chr4_1:56826785-56826804 Msa0558230:intron 10.0%
!! CAAAAAATAATTATAAAACT+AGG + chr4_1:56827361-56827380 Msa0558230:intron 10.0%
!! ATAATATAAATGTTGAAATT+TGG + chr4_1:56828268-56828287 Msa0558230:intron 10.0%
!! TAATATAAATGTTGAAATTT+GGG + chr4_1:56828269-56828288 Msa0558230:intron 10.0%
!! TTTAGCAAATATTAAATTTA+AGG - chr4_1:56828961-56828980 None:intergenic 10.0%
!!! CATTATTTTACAAAAATTTT+CGG + chr4_1:56829850-56829869 Msa0558230:intron 10.0%
!! AAATAAGCAAATAAAAAAAA+GGG - chr4_1:56830071-56830090 None:intergenic 10.0%
!! TAAATAAGCAAATAAAAAAA+AGG - chr4_1:56830072-56830091 None:intergenic 10.0%
!! ATTATTGAAAAAAATGCAAT+GGG - chr4_1:56823175-56823194 None:intergenic 15.0%
!! TATTATTGAAAAAAATGCAA+TGG - chr4_1:56823176-56823195 None:intergenic 15.0%
!!! ATATATAGATAAAACACTTT+TGG + chr4_1:56823379-56823398 Msa0558230:intron 15.0%
!!! AAAAAAGAAGAAAATTTTGA+GGG + chr4_1:56823418-56823437 Msa0558230:intron 15.0%
!! AGTATTAATTATATAGCATT+TGG - chr4_1:56823671-56823690 None:intergenic 15.0%
!! TAAAACTTTAAGCATAATTA+TGG - chr4_1:56824129-56824148 None:intergenic 15.0%
!!! ACATTCTAAATTGATAATTA+TGG + chr4_1:56824472-56824491 Msa0558230:intron 15.0%
!! AATAAAAGATAAATGATTCA+AGG - chr4_1:56824674-56824693 None:intergenic 15.0%
!! TTATTAATTATAAAACAGTG+AGG - chr4_1:56824870-56824889 None:intergenic 15.0%
!!! TTTTAATTGAAAGTCAAAAT+AGG + chr4_1:56826204-56826223 Msa0558230:intron 15.0%
!! AAAAAAATTGTATTTGACAA+AGG - chr4_1:56826315-56826334 None:intergenic 15.0%
!! ATTATATCGAAAATCATAAA+GGG - chr4_1:56827039-56827058 None:intergenic 15.0%
!! TATTATATCGAAAATCATAA+AGG - chr4_1:56827040-56827059 None:intergenic 15.0%
!!! ATTCATTTTATTTTTTGTTC+TGG + chr4_1:56827179-56827198 Msa0558230:intron 15.0%
!! AAACGGAAAAAAAATTAAAA+TGG - chr4_1:56827224-56827243 None:intergenic 15.0%
!!! AACGTTATATTTTATAAGAA+GGG - chr4_1:56828236-56828255 None:intergenic 15.0%
!!! AAACGTTATATTTTATAAGA+AGG - chr4_1:56828237-56828256 None:intergenic 15.0%
!! AAAAAATATAAATCCAAGAA+AGG - chr4_1:56829022-56829041 None:intergenic 15.0%
!!! TTTTATCATATTTTCTGTTA+AGG + chr4_1:56829234-56829253 Msa0558230:intron 15.0%
!!! ATTTTTGTAAAATAATGTAC+AGG - chr4_1:56829847-56829866 None:intergenic 15.0%
!! CTAGAAATTAATTGTGAAAT+TGG + chr4_1:56822908-56822927 Msa0558230:intron 20.0%
!!! GATTTTTATGATTCTTAATG+AGG + chr4_1:56823003-56823022 Msa0558230:intron 20.0%
!!! AATAATAATTTTACCTCATG+TGG + chr4_1:56823189-56823208 Msa0558230:intron 20.0%
!!! ATAATAATTTTACCTCATGT+GGG + chr4_1:56823190-56823209 Msa0558230:intron 20.0%
!!! CAAAAAAGAAGAAAATTTTG+AGG + chr4_1:56823417-56823436 Msa0558230:intron 20.0%
!!! AAAAAGAAGAAAATTTTGAG+GGG + chr4_1:56823419-56823438 Msa0558230:intron 20.0%
!! AAATGCAATTACAAAGAAAA+AGG + chr4_1:56823971-56823990 Msa0558230:CDS 20.0%
!! AAAAAACTGTTGCATAAAAT+TGG - chr4_1:56824320-56824339 None:intergenic 20.0%
!!! TTATTTCTTATTAGATTGCA+TGG + chr4_1:56824689-56824708 Msa0558230:intron 20.0%
!! TATTTCTTATTAGATTGCAT+GGG + chr4_1:56824690-56824709 Msa0558230:intron 20.0%
!!! AAACAATTTATTGATTTTGC+AGG + chr4_1:56824944-56824963 Msa0558230:intron 20.0%
!!! AACAATTTATTGATTTTGCA+GGG + chr4_1:56824945-56824964 Msa0558230:intron 20.0%
!!! TAATTTTTAATTGTTAGCTG+TGG + chr4_1:56825301-56825320 Msa0558230:intron 20.0%
!!! TACACACTTTTTGTTTATAT+TGG + chr4_1:56825400-56825419 Msa0558230:intron 20.0%
!! AAATTAGAAAAAGGTAAAGA+GGG - chr4_1:56825713-56825732 None:intergenic 20.0%
!! AAAATTAGAAAAAGGTAAAG+AGG - chr4_1:56825714-56825733 None:intergenic 20.0%
!!! TTTTTTAAACCCGTAATTTA+AGG + chr4_1:56825982-56826001 Msa0558230:intron 20.0%
!! ACTAAATAGACCTTAAATTA+CGG - chr4_1:56825995-56826014 None:intergenic 20.0%
!!! TTTTTTTTTTTGTGAATGGT+TGG + chr4_1:56826330-56826349 Msa0558230:intron 20.0%
!! TTTCAAACATCAATTGTAAA+GGG - chr4_1:56827071-56827090 None:intergenic 20.0%
!! GATAATGCATTTGAAAATTT+AGG + chr4_1:56827112-56827131 Msa0558230:intron 20.0%
!!! TTAGTTTTATAATAGAGCAA+GGG - chr4_1:56827329-56827348 None:intergenic 20.0%
!! TTGTTCCTATAATTCAATAA+TGG + chr4_1:56827396-56827415 Msa0558230:intron 20.0%
!!! ACGTTATATTTTATAAGAAG+GGG - chr4_1:56828235-56828254 None:intergenic 20.0%
!!! ATTATTTTTGTCAATAGTCT+AGG + chr4_1:56828767-56828786 Msa0558230:intron 20.0%
!!! TAGGTTCTTTTTATTTGTTT+TGG + chr4_1:56828786-56828805 Msa0558230:intron 20.0%
!! TCTATTTGCTTATTTAATGA+GGG + chr4_1:56829875-56829894 Msa0558230:intron 20.0%
!!! AAAAAAGACTTCAAGTTTTA+AGG + chr4_1:56830160-56830179 Msa0558230:CDS 20.0%
!! ATCTTGAGTGAAATTTTAGA+GGG + chr4_1:56823056-56823075 Msa0558230:intron 25.0%
! TATTGAAAAATACGATGTGA+AGG - chr4_1:56823226-56823245 None:intergenic 25.0%
! AAACAAAAAATGACAACTCT+CGG + chr4_1:56823270-56823289 Msa0558230:intron 25.0%
! ATAATGTCAGTTGTATCTAA+TGG - chr4_1:56823344-56823363 None:intergenic 25.0%
! TAGATACAACTGACATTATT+TGG + chr4_1:56823345-56823364 Msa0558230:intron 25.0%
! AGATACAACTGACATTATTT+GGG + chr4_1:56823346-56823365 Msa0558230:intron 25.0%
! TTCCCAAACTAATAAATTCA+GGG - chr4_1:56823480-56823499 None:intergenic 25.0%
!! TAACCATTCCATTCAAATTT+TGG + chr4_1:56823563-56823582 Msa0558230:intron 25.0%
! AAATACGCATAACTATCAAT+TGG - chr4_1:56823694-56823713 None:intergenic 25.0%
!! TGTCATCTGTCTTAAATTTT+AGG + chr4_1:56823719-56823738 Msa0558230:intron 25.0%
! TGTTTGATAAATTGTTTGCT+TGG + chr4_1:56823909-56823928 Msa0558230:intron 25.0%
!! TATCTAGGATAATGATAAGA+AGG + chr4_1:56823935-56823954 Msa0558230:intron 25.0%
! TTGGTATACGTGTTATATAT+TGG + chr4_1:56824225-56824244 Msa0558230:intron 25.0%
! GACTCAAAAAAATCTACAAT+TGG - chr4_1:56824256-56824275 None:intergenic 25.0%
!!! TTCTTTTTCATTTTAAGGTG+TGG + chr4_1:56824339-56824358 Msa0558230:intron 25.0%
!!! TCTTTTTCATTTTAAGGTGT+GGG + chr4_1:56824340-56824359 Msa0558230:intron 25.0%
! TTCTCTTATATGTATGTATG+TGG + chr4_1:56824583-56824602 Msa0558230:intron 25.0%
! TGGGCATTTATTTATAACTA+AGG + chr4_1:56824773-56824792 Msa0558230:intron 25.0%
!!! ACAATTTATTGATTTTGCAG+GGG + chr4_1:56824946-56824965 Msa0558230:intron 25.0%
! TAATTTGATGTGTGTCTATT+TGG + chr4_1:56825154-56825173 Msa0558230:intron 25.0%
! TTGCTAATTAATTCAACAAC+TGG + chr4_1:56825224-56825243 Msa0558230:intron 25.0%
!!! TTACTGTTGTTTCAAAATCA+TGG + chr4_1:56825250-56825269 Msa0558230:intron 25.0%
! GTGTCATAAGACAAATTATT+GGG + chr4_1:56825272-56825291 Msa0558230:intron 25.0%
! TGTCATAAGACAAATTATTG+GGG + chr4_1:56825273-56825292 Msa0558230:intron 25.0%
! TGAGAAAATGTAAGATAACT+TGG - chr4_1:56825585-56825604 None:intergenic 25.0%
! AAAAGTTGAAACAAAAGCAA+CGG + chr4_1:56825635-56825654 Msa0558230:CDS 25.0%
! AATGGTGCAAAATTAGAAAA+AGG - chr4_1:56825722-56825741 None:intergenic 25.0%
! CTAAATAGACCTTAAATTAC+GGG - chr4_1:56825994-56826013 None:intergenic 25.0%
! TGCAAATTAAAAGTGAATAC+AGG - chr4_1:56826043-56826062 None:intergenic 25.0%
!! TCCACTTCGTTTTATATTTT+CGG - chr4_1:56826171-56826190 None:intergenic 25.0%
! CATAGTTTCTCAAACTAAAT+AGG + chr4_1:56826237-56826256 Msa0558230:intron 25.0%
!! TGAATTTTCGTTTTCATGAA+GGG + chr4_1:56826812-56826831 Msa0558230:intron 25.0%
!! AAACTTTGGAGGATTATATA+GGG - chr4_1:56827016-56827035 None:intergenic 25.0%
! AAAATCATAAAGGGAAACTT+TGG - chr4_1:56827030-56827049 None:intergenic 25.0%
! GTTTCAAACATCAATTGTAA+AGG - chr4_1:56827072-56827091 None:intergenic 25.0%
!! TACAATTGATGTTTGAAACT+AGG + chr4_1:56827073-56827092 Msa0558230:intron 25.0%
!! TTTTCAAATGCATTATCCAA+AGG - chr4_1:56827109-56827128 None:intergenic 25.0%
!!! CTTAGTTTTATAATAGAGCA+AGG - chr4_1:56827330-56827349 None:intergenic 25.0%
! ATTATGAAACTACATTTCCT+GGG - chr4_1:56828000-56828019 None:intergenic 25.0%
! AATTAAAATTCCACCAAAAC+AGG - chr4_1:56828027-56828046 None:intergenic 25.0%
! AAACAGTGTTTGAATTAGAT+CGG - chr4_1:56828077-56828096 None:intergenic 25.0%
!! TATTTTATAAGAAGGGGATT+CGG - chr4_1:56828229-56828248 None:intergenic 25.0%
! TCTTTGTTAATACACAACAT+AGG + chr4_1:56828485-56828504 Msa0558230:intron 25.0%
! CATGTATGTAAAATGTAACT+AGG - chr4_1:56828534-56828553 None:intergenic 25.0%
!!! CAATGTTTTGTTTTATCTAC+CGG - chr4_1:56828577-56828596 None:intergenic 25.0%
! GGTAGATAAAACAAAACATT+GGG + chr4_1:56828576-56828595 Msa0558230:CDS 25.0%
! GTAGATAAAACAAAACATTG+GGG + chr4_1:56828577-56828596 Msa0558230:CDS 25.0%
! TACAGAGAGAATTATAAACA+TGG - chr4_1:56828989-56829008 None:intergenic 25.0%
! GTATTGTATCTTGATAAACT+CGG + chr4_1:56829380-56829399 Msa0558230:intron 25.0%
! CTCTATTTGCTTATTTAATG+AGG + chr4_1:56829874-56829893 Msa0558230:intron 25.0%
!!! AAACTTGAAGTCTTTTTTCT+TGG - chr4_1:56830158-56830177 None:intergenic 25.0%
!!! GCATGTTGTTTTTATTGTTT+TGG + chr4_1:56830325-56830344 Msa0558230:three_prime_UTR 25.0%
! ATGATTTACATCTTATGTTC+TGG + chr4_1:56830461-56830480 Msa0558230:three_prime_UTR 25.0%
!!! TGTTGATTTTCTTTTGCTTC+CGG - chr4_1:56822731-56822750 None:intergenic 30.0%
!! CTTATTCTTTGAGATCACTT+TGG + chr4_1:56822855-56822874 Msa0558230:intron 30.0%
GTTAGGTTTACAATCGAAAT+TGG + chr4_1:56822877-56822896 Msa0558230:intron 30.0%
!! TAATTTGCTACAGTGAAGTT+AGG + chr4_1:56822948-56822967 Msa0558230:intron 30.0%
!! AATTTGCTACAGTGAAGTTA+GGG + chr4_1:56822949-56822968 Msa0558230:intron 30.0%
GAAGCTTGATTAATCATTAG+TGG + chr4_1:56823027-56823046 Msa0558230:intron 30.0%
! GATCTTGAGTGAAATTTTAG+AGG + chr4_1:56823055-56823074 Msa0558230:intron 30.0%
TTGAAAAAAATGCAATGGGA+AGG - chr4_1:56823171-56823190 None:intergenic 30.0%
AACAAAAAATGACAACTCTC+GGG + chr4_1:56823271-56823290 Msa0558230:intron 30.0%
!!! GAGTTTATTTTGCAAGTGAA+TGG - chr4_1:56823310-56823329 None:intergenic 30.0%
GATACAACTGACATTATTTG+GGG + chr4_1:56823347-56823366 Msa0558230:intron 30.0%
TCCCAAACTAATAAATTCAG+GGG - chr4_1:56823479-56823498 None:intergenic 30.0%
CTTCCCAAACTAATAAATTC+AGG - chr4_1:56823481-56823500 None:intergenic 30.0%
GAATGGAATGGTTACAAAAA+TGG - chr4_1:56823557-56823576 None:intergenic 30.0%
TAGCCAAAATTTGAATGGAA+TGG - chr4_1:56823569-56823588 None:intergenic 30.0%
ACTAGTAGCCAAAATTTGAA+TGG - chr4_1:56823574-56823593 None:intergenic 30.0%
! CTCTTTTATCAAAGGAAATG+TGG - chr4_1:56823625-56823644 None:intergenic 30.0%
CATTTCCTTTGATAAAAGAG+TGG + chr4_1:56823625-56823644 Msa0558230:intron 30.0%
AGTTGAAATTGAGTATGTAC+CGG + chr4_1:56823752-56823771 Msa0558230:CDS 30.0%
TAATGATAAGAAGGATGAGT+CGG + chr4_1:56823944-56823963 Msa0558230:CDS 30.0%
AGTCTCAAACAAGAAGAAAA+AGG + chr4_1:56824046-56824065 Msa0558230:CDS 30.0%
CAGACTAAAAAGTAAGAATG+AGG - chr4_1:56824278-56824297 None:intergenic 30.0%
!!! CTCATTCTTACTTTTTAGTC+TGG + chr4_1:56824276-56824295 Msa0558230:intron 30.0%
TTGCATAAAATTGGCACAAT+GGG - chr4_1:56824311-56824330 None:intergenic 30.0%
TTCAAGAATACCAACAACTT+TGG - chr4_1:56824383-56824402 None:intergenic 30.0%
TCAAAAGAGAAAATTTCTGC+AGG + chr4_1:56824442-56824461 Msa0558230:CDS 30.0%
TTATGGTCAACTAATGTATG+TGG + chr4_1:56824521-56824540 Msa0558230:intron 30.0%
TATGGTCAACTAATGTATGT+GGG + chr4_1:56824522-56824541 Msa0558230:intron 30.0%
TTAGGAAGATAACATCGATA+TGG + chr4_1:56824559-56824578 Msa0558230:intron 30.0%
TATTAGATTGCATGGGAATA+TGG + chr4_1:56824697-56824716 Msa0558230:intron 30.0%
ATTAGATTGCATGGGAATAT+GGG + chr4_1:56824698-56824717 Msa0558230:intron 30.0%
! AATATGGGTGTTGTATAACA+TGG + chr4_1:56824713-56824732 Msa0558230:intron 30.0%
! ATATGGGTGTTGTATAACAT+GGG + chr4_1:56824714-56824733 Msa0558230:intron 30.0%
ATAAAATCAGGAAGCTGAAA+AGG - chr4_1:56824993-56825012 None:intergenic 30.0%
GAATATTACTTTCCTCTTGT+GGG - chr4_1:56825098-56825117 None:intergenic 30.0%
! GGTGTCATAAGACAAATTAT+TGG + chr4_1:56825271-56825290 Msa0558230:intron 30.0%
! AATATTGATTGTCTTCTGAC+TGG + chr4_1:56825424-56825443 Msa0558230:intron 30.0%
AATGAACAACAGATGTAGAT+CGG - chr4_1:56825465-56825484 None:intergenic 30.0%
AAAGTTGAAACAAAAGCAAC+GGG + chr4_1:56825636-56825655 Msa0558230:CDS 30.0%
! GAAGATGGATATTGATTATC+AGG + chr4_1:56825681-56825700 Msa0558230:CDS 30.0%
AAGTATGCAAGCTAAGAAAA+TGG - chr4_1:56825740-56825759 None:intergenic 30.0%
AAACAAAGTCACTTGAGAAA+GGG - chr4_1:56825795-56825814 None:intergenic 30.0%
TCATGAAGGAAAAGAATTTG+AGG + chr4_1:56825892-56825911 Msa0558230:CDS 30.0%
TCCGAAAATATAAAACGAAG+TGG + chr4_1:56826167-56826186 Msa0558230:intron 30.0%
GTGAGAAAAAAAACAGCAAA+TGG - chr4_1:56826263-56826282 None:intergenic 30.0%
!! TTTGTGAATGGTTGGTTTAA+AGG + chr4_1:56826338-56826357 Msa0558230:intron 30.0%
AATACACTTAAACAGACCAA+TGG - chr4_1:56826396-56826415 None:intergenic 30.0%
GGAAAACAGATGAAATTGTA+AGG - chr4_1:56826601-56826620 None:intergenic 30.0%
!!! GTTTTCCTTTTTCAGAGATA+CGG + chr4_1:56826614-56826633 Msa0558230:intron 30.0%
AAAAAATGTACCTCATCAAC+AGG - chr4_1:56826740-56826759 None:intergenic 30.0%
! CTGAATTTTCGTTTTCATGA+AGG + chr4_1:56826811-56826830 Msa0558230:intron 30.0%
! GAATTTTCGTTTTCATGAAG+GGG + chr4_1:56826813-56826832 Msa0558230:intron 30.0%
AGAAGTCAATGAAGTGAAAA+GGG - chr4_1:56826859-56826878 None:intergenic 30.0%
AAGAAGTCAATGAAGTGAAA+AGG - chr4_1:56826860-56826879 None:intergenic 30.0%
TGTAAACCAACCTCATAATT+AGG - chr4_1:56826956-56826975 None:intergenic 30.0%
! GAAACTTTGGAGGATTATAT+AGG - chr4_1:56827017-56827036 None:intergenic 30.0%
! GTTTGAAACTAGGTTATGTT+TGG + chr4_1:56827083-56827102 Msa0558230:intron 30.0%
TGGCTCCATTATTGAATTAT+AGG - chr4_1:56827404-56827423 None:intergenic 30.0%
! TCAAATTTACCTCTTTTCAC+TGG - chr4_1:56827625-56827644 None:intergenic 30.0%
GATTATGAAACTACATTTCC+TGG - chr4_1:56828001-56828020 None:intergenic 30.0%
! TTTCATAATCTCACCTGTTT+TGG + chr4_1:56828011-56828030 Msa0558230:intron 30.0%
!!! ATTTTAATTTCCTTGTGCCT+TGG + chr4_1:56828038-56828057 Msa0558230:intron 30.0%
!!! TTTTAATTTCCTTGTGCCTT+GGG + chr4_1:56828039-56828058 Msa0558230:intron 30.0%
AACAGTGTTTGAATTAGATC+GGG - chr4_1:56828076-56828095 None:intergenic 30.0%
ATATCAAGTGAATGTCAGTT+TGG - chr4_1:56828124-56828143 None:intergenic 30.0%
! ATTTTGTCGAGAAACTGTTA+TGG + chr4_1:56828144-56828163 Msa0558230:intron 30.0%
ATCTCTCTTTCTTTCTGATA+TGG + chr4_1:56828176-56828195 Msa0558230:intron 30.0%
TCTCTCTTTCTTTCTGATAT+GGG + chr4_1:56828177-56828196 Msa0558230:intron 30.0%
TAACAAAGAAACCTAGAACT+CGG - chr4_1:56828474-56828493 None:intergenic 30.0%
GTAAAATGTAACTAGGAATC+TGG - chr4_1:56828527-56828546 None:intergenic 30.0%
CGGTAGATAAAACAAAACAT+TGG + chr4_1:56828575-56828594 Msa0558230:CDS 30.0%
!! AATCTGTTGATAGTATGTCA+AGG + chr4_1:56828695-56828714 Msa0558230:CDS 30.0%
GCATAGTAAATGACTAATTG+AGG + chr4_1:56828813-56828832 Msa0558230:intron 30.0%
! GTATTGATAATAGCCTTTCT+TGG + chr4_1:56829006-56829025 Msa0558230:intron 30.0%
! GTTTTTCCTCTTTTTCTTCA+AGG - chr4_1:56829261-56829280 None:intergenic 30.0%
AATACTTGTGAGGGAAAAAA+AGG - chr4_1:56829365-56829384 None:intergenic 30.0%
TCAAGATACAATACTTGTGA+GGG - chr4_1:56829374-56829393 None:intergenic 30.0%
ATCAAGATACAATACTTGTG+AGG - chr4_1:56829375-56829394 None:intergenic 30.0%
! AGTTTCTTGCTCCTTTTTAT+GGG + chr4_1:56829479-56829498 Msa0558230:intron 30.0%
!! TAACGTGTTTTATTGTTTCC+AGG + chr4_1:56829539-56829558 Msa0558230:intron 30.0%
TATAAAACAGAAGTCATACC+TGG - chr4_1:56829652-56829671 None:intergenic 30.0%
ACGATGTTAACATCATTAAC+GGG - chr4_1:56829686-56829705 None:intergenic 30.0%
CACGATGTTAACATCATTAA+CGG - chr4_1:56829687-56829706 None:intergenic 30.0%
TATTTAATGAGGGATAACCT+TGG + chr4_1:56829885-56829904 Msa0558230:intron 30.0%
AAATAAAAAAAAGGGCAACC+CGG - chr4_1:56830063-56830082 None:intergenic 30.0%
!!! CTTCAAGTTTTAAGGTTGTT+CGG + chr4_1:56830168-56830187 Msa0558230:exon 30.0%
CATTTACCTGCAAAATAAAG+AGG - chr4_1:56830196-56830215 None:intergenic 30.0%
!!! CTCTTTATTTTGCAGGTAAA+TGG + chr4_1:56830194-56830213 Msa0558230:three_prime_UTR 30.0%
ATCCAAGTATGTCTCATTAA+CGG - chr4_1:56830443-56830462 None:intergenic 30.0%
TTTGGGCAAAAACTTCTAAA+TGG - chr4_1:56830499-56830518 None:intergenic 30.0%
! TTTAGAAGTTTTTGCCCAAA+AGG + chr4_1:56830499-56830518 Msa0558230:three_prime_UTR 30.0%
! TTAGAAGTTTTTGCCCAAAA+GGG + chr4_1:56830500-56830519 Msa0558230:three_prime_UTR 30.0%
CAAGTTGCTAAACACAGAAA+TGG + chr4_1:56822483-56822502 Msa0558230:five_prime_UTR 35.0%
GTTACAGGAAGAATTCAGTT+AGG - chr4_1:56822531-56822550 None:intergenic 35.0%
!!! TTTTTTTACAGTGGCGGTTT+TGG - chr4_1:56822679-56822698 None:intergenic 35.0%
GAAAATCAACAAAGCCTCTA+AGG + chr4_1:56822740-56822759 Msa0558230:CDS 35.0%
! TTTTGCTTCAGTATCGTCTT+CGG - chr4_1:56822784-56822803 None:intergenic 35.0%
!! TCTTTGAGATCACTTTGGTT+AGG + chr4_1:56822860-56822879 Msa0558230:intron 35.0%
GCTTGATTAATCATTAGTGG+TGG + chr4_1:56823030-56823049 Msa0558230:intron 35.0%
TGATTAATCATTAGTGGTGG+TGG + chr4_1:56823033-56823052 Msa0558230:intron 35.0%
!! AAGAAGAAAATTTTGAGGGG+TGG + chr4_1:56823422-56823441 Msa0558230:intron 35.0%
AGCCCCTGAATTTATTAGTT+TGG + chr4_1:56823474-56823493 Msa0558230:intron 35.0%
! GCCCCTGAATTTATTAGTTT+GGG + chr4_1:56823475-56823494 Msa0558230:intron 35.0%
AGCCTTTGATCTATTAACCT+TGG + chr4_1:56823499-56823518 Msa0558230:intron 35.0%
! CATTGCCACTCTTTTATCAA+AGG - chr4_1:56823633-56823652 None:intergenic 35.0%
! TAGCATTTGGTAACTTAAGC+TGG - chr4_1:56823658-56823677 None:intergenic 35.0%
!!! TCATATAGCTCTGCTTTTTC+CGG - chr4_1:56823774-56823793 None:intergenic 35.0%
GAAAAAGCAGAGCTATATGA+AGG + chr4_1:56823774-56823793 Msa0558230:CDS 35.0%
! TGAGAAATTTAGTTTCAGCG+AGG + chr4_1:56823824-56823843 Msa0558230:CDS 35.0%
TTGTTTGCTTGGATGTATCT+AGG + chr4_1:56823920-56823939 Msa0558230:intron 35.0%
GATAACGAGCAAAAAGAGAA+AGG + chr4_1:56824023-56824042 Msa0558230:CDS 35.0%
GTTGCATAAAATTGGCACAA+TGG - chr4_1:56824312-56824331 None:intergenic 35.0%
AGAGAAAATTTCTGCAGGTT+AGG + chr4_1:56824447-56824466 Msa0558230:intron 35.0%
TAGAGATGTAAACATGTTCG+AGG + chr4_1:56824497-56824516 Msa0558230:intron 35.0%
AGAGATGTAAACATGTTCGA+GGG + chr4_1:56824498-56824517 Msa0558230:intron 35.0%
ACTAATGTATGTGGGATGTA+TGG + chr4_1:56824530-56824549 Msa0558230:intron 35.0%
TATAAAACAGTGAGGCCAAT+TGG - chr4_1:56824862-56824881 None:intergenic 35.0%
! TCTGATTTTCTCAATTCCTG+TGG - chr4_1:56825021-56825040 None:intergenic 35.0%
AGGAATTGAGAAAATCAGAC+AGG + chr4_1:56825022-56825041 Msa0558230:CDS 35.0%
ATGTTATCATTCTGTCTGTG+TGG + chr4_1:56825069-56825088 Msa0558230:intron 35.0%
GGAATATTACTTTCCTCTTG+TGG - chr4_1:56825099-56825118 None:intergenic 35.0%
! ACTTCTACACTCTTCTGAAA+TGG + chr4_1:56825185-56825204 Msa0558230:intron 35.0%
! TATCTTACATTTTCTCACGC+AGG + chr4_1:56825588-56825607 Msa0558230:intron 35.0%
! ATATCCATCTTCCCCATTTT+TGG - chr4_1:56825673-56825692 None:intergenic 35.0%
GAAACAAAGTCACTTGAGAA+AGG - chr4_1:56825796-56825815 None:intergenic 35.0%
! TCTCAAGTGACTTTGTTTCT+TGG + chr4_1:56825797-56825816 Msa0558230:intron 35.0%
TGTATTTGACAAAGGAGACA+TGG - chr4_1:56826307-56826326 None:intergenic 35.0%
ACATTGTTCTAACACCTTCA+TGG + chr4_1:56826363-56826382 Msa0558230:intron 35.0%
CATTGTTCTAACACCTTCAT+GGG + chr4_1:56826364-56826383 Msa0558230:intron 35.0%
CACAGCAAGCAATATAACAA+TGG - chr4_1:56826424-56826443 None:intergenic 35.0%
AAGTCAATGAAGTGAAAAGG+GGG - chr4_1:56826857-56826876 None:intergenic 35.0%
GAAGTCAATGAAGTGAAAAG+GGG - chr4_1:56826858-56826877 None:intergenic 35.0%
CCAAAAACATCTCCATAAAG+TGG - chr4_1:56826914-56826933 None:intergenic 35.0%
! CCACTTTATGGAGATGTTTT+TGG + chr4_1:56826911-56826930 Msa0558230:CDS 35.0%
AAGTTCCACTTTGCAATTAG+AGG + chr4_1:56826979-56826998 Msa0558230:CDS 35.0%
AGTTCCACTTTGCAATTAGA+GGG + chr4_1:56826980-56826999 Msa0558230:CDS 35.0%
ATCATAAAGGGAAACTTTGG+AGG - chr4_1:56827027-56827046 None:intergenic 35.0%
ATCTATTCACTCTGAGCAAA+CGG - chr4_1:56827241-56827260 None:intergenic 35.0%
!!! ACGATTGTTGCTTTTGTTGA+AGG + chr4_1:56827517-56827536 Msa0558230:intron 35.0%
TTGTTGAAGGACATTGTACA+CGG + chr4_1:56827530-56827549 Msa0558230:intron 35.0%
! TGGTTCTATTCAAACATCAG+TGG + chr4_1:56827554-56827573 Msa0558230:CDS 35.0%
TATTCAAACATCAGTGGTAC+TGG + chr4_1:56827560-56827579 Msa0558230:CDS 35.0%
ATTCAAACATCAGTGGTACT+GGG + chr4_1:56827561-56827580 Msa0558230:CDS 35.0%
ATTCATTCTCCAGTGAAAAG+AGG + chr4_1:56827613-56827632 Msa0558230:CDS 35.0%
GACATTAATGCCATCATAAC+AGG - chr4_1:56827661-56827680 None:intergenic 35.0%
!! TTACTTAGTTCTGTGTGATG+AGG + chr4_1:56827784-56827803 Msa0558230:CDS 35.0%
!! TACTTAGTTCTGTGTGATGA+GGG + chr4_1:56827785-56827804 Msa0558230:CDS 35.0%
!!! TGTAGAAACACTGTTTTGGT+GGG + chr4_1:56827887-56827906 Msa0558230:intron 35.0%
GTATCATACGTGCAAATGAT+GGG + chr4_1:56827966-56827985 Msa0558230:intron 35.0%
TATTACTCCTCTTCAAGTCT+AGG + chr4_1:56828726-56828745 Msa0558230:intron 35.0%
ACTAAATTAGCCACATGATG+GGG - chr4_1:56828852-56828871 None:intergenic 35.0%
GACTAAATTAGCCACATGAT+GGG - chr4_1:56828853-56828872 None:intergenic 35.0%
TGACTAAATTAGCCACATGA+TGG - chr4_1:56828854-56828873 None:intergenic 35.0%
AGAAATGAGCGCACAAATAA+AGG - chr4_1:56829050-56829069 None:intergenic 35.0%
TTACGAAGGTCAATAACATC+AGG - chr4_1:56829114-56829133 None:intergenic 35.0%
TGATGTTATTGACCTTCGTA+AGG + chr4_1:56829113-56829132 Msa0558230:CDS 35.0%
GAAAGACTCACTTGATAAAG+AGG - chr4_1:56829162-56829181 None:intergenic 35.0%
TAAGGTCCTTGAAGAAAAAG+AGG + chr4_1:56829252-56829271 Msa0558230:intron 35.0%
! GAGTTTCTTGCTCCTTTTTA+TGG + chr4_1:56829478-56829497 Msa0558230:intron 35.0%
! GTTTCTTGCTCCTTTTTATG+GGG + chr4_1:56829480-56829499 Msa0558230:intron 35.0%
! TTTCTTGCTCCTTTTTATGG+GGG + chr4_1:56829481-56829500 Msa0558230:intron 35.0%
CGTTATCCCACAAGAAAATA+CGG - chr4_1:56829524-56829543 None:intergenic 35.0%
!! TTCCAGGTTGATTTGCTTAA+AGG + chr4_1:56829555-56829574 Msa0558230:intron 35.0%
ACATCTGCTAAAACTATTCC+AGG + chr4_1:56829720-56829739 Msa0558230:intron 35.0%
ATTCCAGGTATAATGAAGCA+AGG + chr4_1:56829735-56829754 Msa0558230:intron 35.0%
TTCCAGGTATAATGAAGCAA+GGG + chr4_1:56829736-56829755 Msa0558230:intron 35.0%
GTACAGGTCTATATGATTTG+AGG - chr4_1:56829831-56829850 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr4_1:56829972-56829991 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr4_1:56829971-56829990 Msa0558230:intron 35.0%
AAGAGGAAGCAAGAAAAAGA+TGG + chr4_1:56830127-56830146 Msa0558230:CDS 35.0%
ATCCGTTAATGAGACATACT+TGG + chr4_1:56830438-56830457 Msa0558230:three_prime_UTR 35.0%
! AAGACATATGCATCCCTTTT+GGG - chr4_1:56830516-56830535 None:intergenic 35.0%
GCGCGTGTAAGAAAGTTATT+GGG - chr4_1:56822509-56822528 None:intergenic 40.0%
ATTTGGTCGGATTCACGAAT+GGG - chr4_1:56822589-56822608 None:intergenic 40.0%
GAAACGCTAGTGCATCAAAA+CGG + chr4_1:56822627-56822646 Msa0558230:CDS 40.0%
!!! CCGAGATTTTTTTACAGTGG+CGG - chr4_1:56822685-56822704 None:intergenic 40.0%
CCGCCACTGTAAAAAAATCT+CGG + chr4_1:56822682-56822701 Msa0558230:CDS 40.0%
CGCCACTGTAAAAAAATCTC+GGG + chr4_1:56822683-56822702 Msa0558230:CDS 40.0%
!!! CTCCCGAGATTTTTTTACAG+TGG - chr4_1:56822688-56822707 None:intergenic 40.0%
ACAACAACACCAACAACAAC+AGG + chr4_1:56822821-56822840 Msa0558230:CDS 40.0%
AGATGAGAACCTGTTGTTGT+TGG - chr4_1:56822833-56822852 None:intergenic 40.0%
AGTTGTATCTAATGGCGTAG+TGG - chr4_1:56823336-56823355 None:intergenic 40.0%
GGCCAAGGTTAATAGATCAA+AGG - chr4_1:56823504-56823523 None:intergenic 40.0%
GAAATCAAAGAGAATGGCCA+AGG - chr4_1:56823519-56823538 None:intergenic 40.0%
GTCGCAGAAATCAAAGAGAA+TGG - chr4_1:56823525-56823544 None:intergenic 40.0%
TTCAGCAGATCCAAAGTTGT+TGG + chr4_1:56824370-56824389 Msa0558230:CDS 40.0%
TGGGTACAGGTACAGTATTT+CGG - chr4_1:56824412-56824431 None:intergenic 40.0%
GTAAACATGTTCGAGGGTTA+TGG + chr4_1:56824504-56824523 Msa0558230:intron 40.0%
TGGGATGTATGGATAGAGTT+AGG + chr4_1:56824541-56824560 Msa0558230:intron 40.0%
TGTATGTATGTGGTACTTGC+AGG + chr4_1:56824593-56824612 Msa0558230:intron 40.0%
GTATGTATGTGGTACTTGCA+GGG + chr4_1:56824594-56824613 Msa0558230:intron 40.0%
TATGTATGTGGTACTTGCAG+GGG + chr4_1:56824595-56824614 Msa0558230:intron 40.0%
AATGATTCAAGGCTACTCAG+TGG - chr4_1:56824663-56824682 None:intergenic 40.0%
! TTGATTTTGCAGGGGAAAAG+AGG + chr4_1:56824954-56824973 Msa0558230:intron 40.0%
TATTACTTTCCTCTTGTGGG+TGG - chr4_1:56825095-56825114 None:intergenic 40.0%
AGTAATATTCCAAGAGAGCG+TGG + chr4_1:56825108-56825127 Msa0558230:intron 40.0%
!! CTCTTCTGAAATGGCTTTCA+TGG + chr4_1:56825194-56825213 Msa0558230:intron 40.0%
GCAGGCTTATATTGAGAAAG+AGG + chr4_1:56825606-56825625 Msa0558230:intron 40.0%
GAACGCATGCAACCAAAAAT+GGG + chr4_1:56825658-56825677 Msa0558230:CDS 40.0%
AACGCATGCAACCAAAAATG+GGG + chr4_1:56825659-56825678 Msa0558230:CDS 40.0%
! GACTTTGTTTCTTGGTTGTC+AGG + chr4_1:56825805-56825824 Msa0558230:intron 40.0%
CATACATACATGCAGCATAG+TGG + chr4_1:56825957-56825976 Msa0558230:intron 40.0%
!! ATGGAAGTATCCACTACTCA+AGG - chr4_1:56826288-56826307 None:intergenic 40.0%
!! TGTTATATTGCTTGCTGTGC+AGG + chr4_1:56826425-56826444 Msa0558230:intron 40.0%
AACTCATGTGATAACATGCC+AGG - chr4_1:56826471-56826490 None:intergenic 40.0%
! CATGAGTTGAAAGAAGCTCT+TGG + chr4_1:56826483-56826502 Msa0558230:CDS 40.0%
ACCTGCATGTTAATAAGCCA+CGG - chr4_1:56826531-56826550 None:intergenic 40.0%
TGCAGGTAAAATCAGTGTCT+TGG + chr4_1:56826544-56826563 Msa0558230:intron 40.0%
! ATCTTCAGAGAAGGGTATGA+TGG - chr4_1:56826647-56826666 None:intergenic 40.0%
ATAACCAAAACTAGCTCCTG+GGG - chr4_1:56826693-56826712 None:intergenic 40.0%
GATAACCAAAACTAGCTCCT+GGG - chr4_1:56826694-56826713 None:intergenic 40.0%
TGATAACCAAAACTAGCTCC+TGG - chr4_1:56826695-56826714 None:intergenic 40.0%
!!! GCTAGTTTTGGTTATCATCC+TGG + chr4_1:56826698-56826717 Msa0558230:CDS 40.0%
!!! AGTTTTGGTTATCATCCTGG+TGG + chr4_1:56826701-56826720 Msa0558230:CDS 40.0%
AAATGTACCTCATCAACAGG+AGG - chr4_1:56826737-56826756 None:intergenic 40.0%
AATTAGGCTGATCTTGCTGA+TGG - chr4_1:56826940-56826959 None:intergenic 40.0%
GCAAGATCAGCCTAATTATG+AGG + chr4_1:56826943-56826962 Msa0558230:CDS 40.0%
GATCAGCCTAATTATGAGGT+TGG + chr4_1:56826947-56826966 Msa0558230:CDS 40.0%
GTTCCACTTTGCAATTAGAG+GGG + chr4_1:56826981-56827000 Msa0558230:CDS 40.0%
TTACCCCTCTAATTGCAAAG+TGG - chr4_1:56826987-56827006 None:intergenic 40.0%
! ACTAGGTTATGTTTGGCCTT+TGG + chr4_1:56827090-56827109 Msa0558230:intron 40.0%
GAGCCATCACAATTGTGATT+CGG + chr4_1:56827418-56827437 Msa0558230:intron 40.0%
ACACCGAATCACAATTGTGA+TGG - chr4_1:56827424-56827443 None:intergenic 40.0%
ACTGGAGAATGAATCAAGTG+AGG - chr4_1:56827607-56827626 None:intergenic 40.0%
TGCCATCATAACAGGCTTTA+GGG - chr4_1:56827653-56827672 None:intergenic 40.0%
ATGCCATCATAACAGGCTTT+AGG - chr4_1:56827654-56827673 None:intergenic 40.0%
GATTTCCAGCAATATCCCAA+TGG - chr4_1:56827711-56827730 None:intergenic 40.0%
!! CAATGTGTTGCTTGGAGTTA+CGG + chr4_1:56827839-56827858 Msa0558230:CDS 40.0%
! CAGTGTTTCTACAGGTGTTA+TGG - chr4_1:56827880-56827899 None:intergenic 40.0%
! CACCTGTAGAAACACTGTTT+TGG + chr4_1:56827883-56827902 Msa0558230:CDS 40.0%
! CACCAAAACAGTGTTTCTAC+AGG - chr4_1:56827888-56827907 None:intergenic 40.0%
!! CTGTAGAAACACTGTTTTGG+TGG + chr4_1:56827886-56827905 Msa0558230:intron 40.0%
! CAGTGTTTCTACAGGAGTTA+TGG - chr4_1:56827929-56827948 None:intergenic 40.0%
! CTCCTGTAGAAACACTGTTT+TGG + chr4_1:56827932-56827951 Msa0558230:intron 40.0%
!! CTGTAGAAACACTGTTTTGG+CGG + chr4_1:56827886-56827905 Msa0558230:intron 40.0%
!!! TGTAGAAACACTGTTTTGGC+GGG + chr4_1:56827936-56827955 Msa0558230:intron 40.0%
GGTATCATACGTGCAAATGA+TGG + chr4_1:56827965-56827984 Msa0558230:intron 40.0%
!! CATAATCTCACCTGTTTTGG+TGG + chr4_1:56828014-56828033 Msa0558230:intron 40.0%
TCAAGTGAATGTCAGTTTGG+AGG - chr4_1:56828121-56828140 None:intergenic 40.0%
CAGCAGTTTCAAAACAGAAG+AGG - chr4_1:56828204-56828223 None:intergenic 40.0%
!! TGGCACTGAATGGGTATTTT+TGG + chr4_1:56828352-56828371 Msa0558230:intron 40.0%
!! GGCACTGAATGGGTATTTTT+GGG + chr4_1:56828353-56828372 Msa0558230:intron 40.0%
!! GCACTGAATGGGTATTTTTG+GGG + chr4_1:56828354-56828373 Msa0558230:intron 40.0%
!!! ATGGGTATTTTTGGGGAGTT+TGG + chr4_1:56828361-56828380 Msa0558230:intron 40.0%
!!! TGGGTATTTTTGGGGAGTTT+GGG + chr4_1:56828362-56828381 Msa0558230:intron 40.0%
! AGTCTGGTAACGAGAGTTAT+TGG - chr4_1:56828444-56828463 None:intergenic 40.0%
CATACATGTTCTCACAATGC+AGG + chr4_1:56828546-56828565 Msa0558230:intron 40.0%
AACAAAACATTGGGGTGACT+TGG + chr4_1:56828585-56828604 Msa0558230:CDS 40.0%
AAAGGAACCTAGACTTGAAG+AGG - chr4_1:56828736-56828755 None:intergenic 40.0%
AGTTTAAGAACCCCATCATG+TGG + chr4_1:56828839-56828858 Msa0558230:intron 40.0%
TAACCACGTGAATGTTTCAC+TGG + chr4_1:56828934-56828953 Msa0558230:intron 40.0%
ACTTGATAAAGAGGCCTTTC+AGG - chr4_1:56829153-56829172 None:intergenic 40.0%
! AAAGAGGAAAAACTTGCTCC+TGG + chr4_1:56829268-56829287 Msa0558230:CDS 40.0%
TCCATTTCTCTCCAGTTATG+TGG + chr4_1:56829406-56829425 Msa0558230:intron 40.0%
ACCACATAACTGGAGAGAAA+TGG - chr4_1:56829410-56829429 None:intergenic 40.0%
TTTCTCTCCAGTTATGTGGT+TGG + chr4_1:56829410-56829429 Msa0558230:intron 40.0%
! TTCTTGCTCCTTTTTATGGG+GGG + chr4_1:56829482-56829501 Msa0558230:intron 40.0%
! CTTTTTATGGGGGGTAAAGA+GGG + chr4_1:56829491-56829510 Msa0558230:intron 40.0%
! TTTTTATGGGGGGTAAAGAG+GGG + chr4_1:56829492-56829511 Msa0558230:intron 40.0%
! CATGTGCCGTATTTTCTTGT+GGG + chr4_1:56829515-56829534 Msa0558230:intron 40.0%
GACCTTTAAGCAAATCAACC+TGG - chr4_1:56829560-56829579 None:intergenic 40.0%
AGGTCAAAAGACAGATAGAG+TGG + chr4_1:56829575-56829594 Msa0558230:CDS 40.0%
! TGGAGAACGTTTTACATACC+AGG + chr4_1:56829631-56829650 Msa0558230:CDS 40.0%
CAAGGGAGGAAGAGAAATTA+CGG + chr4_1:56829753-56829772 Msa0558230:CDS 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr4_1:56829921-56829940 Msa0558230:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr4_1:56829965-56829984 Msa0558230:CDS 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr4_1:56829966-56829985 Msa0558230:CDS 40.0%
CGTACAATACACCAAATGGT+GGG + chr4_1:56829997-56830016 Msa0558230:intron 40.0%
TCTTCTCATTCTGCATCAGA+TGG - chr4_1:56830102-56830121 None:intergenic 40.0%
TGATGCAGAATGAGAAGAAG+AGG + chr4_1:56830104-56830123 Msa0558230:intron 40.0%
AGAATGAGAAGAAGAGGAAG+AGG + chr4_1:56830110-56830129 Msa0558230:intron 40.0%
!!! TCGGTTCCTCTTTATTTTGC+AGG + chr4_1:56830187-56830206 Msa0558230:three_prime_UTR 40.0%
CTACTCATGTGATGATACGA+TGG + chr4_1:56830359-56830378 Msa0558230:three_prime_UTR 40.0%
CTGACACGTTCTTCTGTATA+AGG - chr4_1:56830388-56830407 None:intergenic 40.0%
! CAAGACATATGCATCCCTTT+TGG - chr4_1:56830517-56830536 None:intergenic 40.0%
AAAGGGATGCATATGTCTTG+TGG + chr4_1:56830517-56830536 Msa0558230:three_prime_UTR 40.0%
GGCGCGTGTAAGAAAGTTAT+TGG - chr4_1:56822510-56822529 None:intergenic 45.0%
ACGAATGGGATTAACCGAGA+GGG - chr4_1:56822575-56822594 None:intergenic 45.0%
! GATTTGGTCGGATTCACGAA+TGG - chr4_1:56822590-56822609 None:intergenic 45.0%
TTGATGCACTAGCGTTTCTG+CGG - chr4_1:56822625-56822644 None:intergenic 45.0%
!! CAAAACGGTGTCGTTTCCAA+CGG + chr4_1:56822642-56822661 Msa0558230:CDS 45.0%
! TTTTCTTTTGCTTCCGGCGA+CGG - chr4_1:56822725-56822744 None:intergenic 45.0%
! GTTAGCGTTTGGTTCCTTAG+AGG - chr4_1:56822757-56822776 None:intergenic 45.0%
!! GAAAATTTTGAGGGGTGGCA+TGG + chr4_1:56823427-56823446 Msa0558230:intron 45.0%
TCAGGGGCTAACATTCTCTA+AGG - chr4_1:56823463-56823482 None:intergenic 45.0%
AGCAGAGCTATATGAAGGCT+TGG + chr4_1:56823779-56823798 Msa0558230:CDS 45.0%
GCTATATGAAGGCTTGGATG+AGG + chr4_1:56823785-56823804 Msa0558230:CDS 45.0%
!! CAGCGAGGTTATTGATTCAG+AGG + chr4_1:56823839-56823858 Msa0558230:CDS 45.0%
TTTGTGTTCAGCTTCAACGC+AGG + chr4_1:56824150-56824169 Msa0558230:intron 45.0%
AGCTGAAACAGATTAGCGCA+AGG + chr4_1:56824186-56824205 Msa0558230:CDS 45.0%
ATACCAACCTCGACAACATC+AGG - chr4_1:56824212-56824231 None:intergenic 45.0%
GAAATACTGTACCTGTACCC+AGG + chr4_1:56824411-56824430 Msa0558230:CDS 45.0%
ATCACCAAGCCTGGAATTGT+AGG + chr4_1:56824631-56824650 Msa0558230:intron 45.0%
AACACCTACAATTCCAGGCT+TGG - chr4_1:56824638-56824657 None:intergenic 45.0%
TGGCAAACACCTACAATTCC+AGG - chr4_1:56824643-56824662 None:intergenic 45.0%
CTTTCACTGTGCTTAATGCC+CGG + chr4_1:56824828-56824847 Msa0558230:intron 45.0%
TTTCACTGTGCTTAATGCCC+GGG + chr4_1:56824829-56824848 Msa0558230:intron 45.0%
GACTATGAGGTTATGTGGTC+AGG - chr4_1:56824894-56824913 None:intergenic 45.0%
CGCATGACTATGAGGTTATG+TGG - chr4_1:56824899-56824918 None:intergenic 45.0%
TTTGTGTGCGCATGACTATG+AGG - chr4_1:56824907-56824926 None:intergenic 45.0%
CCTGTGGCAGCAATAAAATC+AGG - chr4_1:56825005-56825024 None:intergenic 45.0%
! CCTGATTTTATTGCTGCCAC+AGG + chr4_1:56825002-56825021 Msa0558230:CDS 45.0%
TTACACAAACCACGCTCTCT+TGG - chr4_1:56825120-56825139 None:intergenic 45.0%
GGAACGCATGCAACCAAAAA+TGG + chr4_1:56825657-56825676 Msa0558230:CDS 45.0%
GCAACCAAAAATGGGGAAGA+TGG + chr4_1:56825666-56825685 Msa0558230:CDS 45.0%
!! ATGACAGCTTTGGCTTTGTC+TGG - chr4_1:56825856-56825875 None:intergenic 45.0%
AAGCCAAAGCTGTCATCTCT+TGG + chr4_1:56825860-56825879 Msa0558230:CDS 45.0%
AGCCAAAGCTGTCATCTCTT+GGG + chr4_1:56825861-56825880 Msa0558230:CDS 45.0%
CTTGGGGACTTGTATCATGA+AGG + chr4_1:56825878-56825897 Msa0558230:CDS 45.0%
TTTCTCACCTCCTTGAGTAG+TGG + chr4_1:56826275-56826294 Msa0558230:intron 45.0%
! GAAGTATCCACTACTCAAGG+AGG - chr4_1:56826285-56826304 None:intergenic 45.0%
CCAATGGACAAATCCCATGA+AGG - chr4_1:56826380-56826399 None:intergenic 45.0%
CCTTCATGGGATTTGTCCAT+TGG + chr4_1:56826377-56826396 Msa0558230:intron 45.0%
TTGCTGTGCAGGTAAAGTTG+AGG + chr4_1:56826436-56826455 Msa0558230:intron 45.0%
TGCTGTGCAGGTAAAGTTGA+GGG + chr4_1:56826437-56826456 Msa0558230:intron 45.0%
AAGTTGAGGGAGATGAAACC+TGG + chr4_1:56826450-56826469 Msa0558230:CDS 45.0%
ATGTTAATAAGCCACGGAGG+AGG - chr4_1:56826525-56826544 None:intergenic 45.0%
TGCATGTTAATAAGCCACGG+AGG - chr4_1:56826528-56826547 None:intergenic 45.0%
TCCGTGGCTTATTAACATGC+AGG + chr4_1:56826527-56826546 Msa0558230:CDS 45.0%
! GAGGACCGTATCTCTGAAAA+AGG - chr4_1:56826622-56826641 None:intergenic 45.0%
! TTCAGAGAAGGGTATGATGG+TGG - chr4_1:56826644-56826663 None:intergenic 45.0%
TAACCAAAACTAGCTCCTGG+GGG - chr4_1:56826692-56826711 None:intergenic 45.0%
TGAAGTGAAAAGGGGGATGA+GGG - chr4_1:56826850-56826869 None:intergenic 45.0%
ATGAAGTGAAAAGGGGGATG+AGG - chr4_1:56826851-56826870 None:intergenic 45.0%
TGTCTGCATCTTGAGCAGTT+CGG + chr4_1:56826884-56826903 Msa0558230:CDS 45.0%
!! CACAATTGTGATTCGGTGTG+AGG + chr4_1:56827425-56827444 Msa0558230:intron 45.0%
! GGTCGACTCTCAGATATTCT+TGG + chr4_1:56827464-56827483 Msa0558230:intron 45.0%
GTCCCTAAAGCCTGTTATGA+TGG + chr4_1:56827648-56827667 Msa0558230:intron 45.0%
ATTAATGTCCCTCCCGAAGT+TGG + chr4_1:56827672-56827691 Msa0558230:intron 45.0%
ATCCCAATGGACAGAAGTGA+CGG - chr4_1:56827698-56827717 None:intergenic 45.0%
TCTGTCCATTGGGATATTGC+TGG + chr4_1:56827703-56827722 Msa0558230:intron 45.0%
GTGTGATGAGGGTAAAGATC+AGG + chr4_1:56827796-56827815 Msa0558230:CDS 45.0%
AGATCAGGACAGATCTTCAG+TGG + chr4_1:56827811-56827830 Msa0558230:CDS 45.0%
GTGTTATGGTCTCTCCTGTA+GGG - chr4_1:56827866-56827885 None:intergenic 45.0%
!!! TGTTTTGGTGGGAAGATAGC+AGG + chr4_1:56827898-56827917 Msa0558230:intron 45.0%
! CGCCAAAACAGTGTTTCTAC+AGG - chr4_1:56827937-56827956 None:intergenic 45.0%
! CTTTTAACACCCAAGGCACA+AGG - chr4_1:56828051-56828070 None:intergenic 45.0%
! TCGGGTACTTTTAACACCCA+AGG - chr4_1:56828058-56828077 None:intergenic 45.0%
TTCGTATTCACGACAGAGAG+CGG - chr4_1:56828323-56828342 None:intergenic 45.0%
TCTCTGTCGTGAATACGAAG+AGG + chr4_1:56828324-56828343 Msa0558230:intron 45.0%
TGTCGTGAATACGAAGAGGA+TGG + chr4_1:56828328-56828347 Msa0558230:intron 45.0%
GTCGTGAATACGAAGAGGAT+GGG + chr4_1:56828329-56828348 Msa0558230:intron 45.0%
!! ATTTTTGGGGAGTTTGGGTG+TGG + chr4_1:56828367-56828386 Msa0558230:intron 45.0%
AGAACTCGGAAAACAGAGTC+TGG - chr4_1:56828460-56828479 None:intergenic 45.0%
! GACTCTGTTTTCCGAGTTCT+AGG + chr4_1:56828460-56828479 Msa0558230:intron 45.0%
!! TTTGTTTTCAGCACACCGAC+TGG + chr4_1:56829078-56829097 Msa0558230:intron 45.0%
!! TTGTTTTCAGCACACCGACT+GGG + chr4_1:56829079-56829098 Msa0558230:intron 45.0%
GTAGTTCCAAGCAAAGTTCC+AGG - chr4_1:56829289-56829308 None:intergenic 45.0%
!! TTTTGCCCCTGACTTGTCTT+GGG - chr4_1:56829444-56829463 None:intergenic 45.0%
!! TTTTTGCCCCTGACTTGTCT+TGG - chr4_1:56829445-56829464 None:intergenic 45.0%
AAGACAAGTCAGGGGCAAAA+AGG + chr4_1:56829444-56829463 Msa0558230:CDS 45.0%
AGACAAGTCAGGGGCAAAAA+GGG + chr4_1:56829445-56829464 Msa0558230:CDS 45.0%
CCTCTTTACCCCCCATAAAA+AGG - chr4_1:56829493-56829512 None:intergenic 45.0%
! CCTTTTTATGGGGGGTAAAG+AGG + chr4_1:56829490-56829509 Msa0558230:intron 45.0%
! GCATGTGCCGTATTTTCTTG+TGG + chr4_1:56829514-56829533 Msa0558230:intron 45.0%
CTCCCTTGCTTCATTATACC+TGG - chr4_1:56829741-56829760 None:intergenic 45.0%
CAGGTATAATGAAGCAAGGG+AGG + chr4_1:56829739-56829758 Msa0558230:intron 45.0%
TTTCAGTGACATGGTTGCTG+AGG + chr4_1:56829790-56829809 Msa0558230:CDS 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr4_1:56829927-56829946 Msa0558230:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr4_1:56829928-56829947 Msa0558230:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr4_1:56829961-56829980 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr4_1:56829993-56830012 Msa0558230:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr4_1:56829996-56830015 Msa0558230:intron 45.0%
TTGCAGGTAAATGGAAGACG+TGG + chr4_1:56830203-56830222 Msa0558230:three_prime_UTR 45.0%
! TCATTTTCCATGAGCAGCAG+AGG + chr4_1:56830249-56830268 Msa0558230:three_prime_UTR 45.0%
!! ATAATAAATTGAAAATAAAA+TGG - chr4_1:56826072-56826091 None:intergenic 5.0%
!!! TATTTGATTTTTATTTATTT+TGG - chr4_1:56827306-56827325 None:intergenic 5.0%
!! AAATAATTAAGAAAAAAAAA+AGG - chr4_1:56828754-56828773 None:intergenic 5.0%
!!! TATAATTTTTTTATAGTATT+TGG + chr4_1:56829329-56829348 Msa0558230:intron 5.0%
TCCTGTAACTCTCCATCGCA+CGG + chr4_1:56822542-56822561 Msa0558230:five_prime_UTR 50.0%
ATGGGATTAACCGAGAGGGT+GGG - chr4_1:56822571-56822590 None:intergenic 50.0%
AATGGGATTAACCGAGAGGG+TGG - chr4_1:56822572-56822591 None:intergenic 50.0%
CACGAATGGGATTAACCGAG+AGG - chr4_1:56822576-56822595 None:intergenic 50.0%
GTCGTTTCCAACGGAGATCT+TGG + chr4_1:56822651-56822670 Msa0558230:CDS 50.0%
! TTTGGAGCCAAGATCTCCGT+TGG - chr4_1:56822661-56822680 None:intergenic 50.0%
TGCTTCAGTATCGTCTTCGG+AGG - chr4_1:56822781-56822800 None:intergenic 50.0%
! GGGGCTAACATTCTCTAAGG+AGG - chr4_1:56823460-56823479 None:intergenic 50.0%
! GGCAGACTCTGATTCTGAAG+AGG + chr4_1:56823992-56824011 Msa0558230:CDS 50.0%
! CTCTTTTGACACCAGTGCCT+GGG - chr4_1:56824431-56824450 None:intergenic 50.0%
! TCTCTTTTGACACCAGTGCC+TGG - chr4_1:56824432-56824451 None:intergenic 50.0%
CGGGCATTAAGCACAGTGAA+AGG - chr4_1:56824830-56824849 None:intergenic 50.0%
AGGCCAATTGGAATTCAGCC+CGG - chr4_1:56824850-56824869 None:intergenic 50.0%
GCCAAAGCTGTCATCTCTTG+GGG + chr4_1:56825862-56825881 Msa0558230:CDS 50.0%
TCCCCAAGAGATGACAGCTT+TGG - chr4_1:56825866-56825885 None:intergenic 50.0%
AGAAGCTCTTGGTATGCCTG+AGG + chr4_1:56826494-56826513 Msa0558230:CDS 50.0%
GAAGCTCTTGGTATGCCTGA+GGG + chr4_1:56826495-56826514 Msa0558230:CDS 50.0%
!! AGAGAAGGGTATGATGGTGG+AGG - chr4_1:56826641-56826660 None:intergenic 50.0%
! TACCCTTCTCTGAAGATCCC+CGG + chr4_1:56826650-56826669 Msa0558230:CDS 50.0%
AAACTAGCTCCTGGGGGAAT+GGG - chr4_1:56826686-56826705 None:intergenic 50.0%
AAAACTAGCTCCTGGGGGAA+TGG - chr4_1:56826687-56826706 None:intergenic 50.0%
!! ATTCCCCCAGGAGCTAGTTT+TGG + chr4_1:56826686-56826705 Msa0558230:CDS 50.0%
TTGGTTATCATCCTGGTGGC+TGG + chr4_1:56826705-56826724 Msa0558230:CDS 50.0%
TGGTTATCATCCTGGTGGCT+GGG + chr4_1:56826706-56826725 Msa0558230:CDS 50.0%
AAGTGAAAAGGGGGATGAGG+GGG - chr4_1:56826848-56826867 None:intergenic 50.0%
GAAGTGAAAAGGGGGATGAG+GGG - chr4_1:56826849-56826868 None:intergenic 50.0%
GTCTGCATCTTGAGCAGTTC+GGG + chr4_1:56826885-56826904 Msa0558230:CDS 50.0%
TGAAGGACATTGTACACGGC+TGG + chr4_1:56827534-56827553 Msa0558230:intron 50.0%
ACAGAAGTGACGGCCAACTT+CGG - chr4_1:56827688-56827707 None:intergenic 50.0%
! TGGCACTGCAATGTGTTGCT+TGG + chr4_1:56827831-56827850 Msa0558230:CDS 50.0%
! GGTGTTATGGTCTCTCCTGT+AGG - chr4_1:56827867-56827886 None:intergenic 50.0%
!!! CACTGTTTTGGCGGGAAGAT+AGG + chr4_1:56827944-56827963 Msa0558230:intron 50.0%
! AATGATGGGAAGTGAGACCC+AGG + chr4_1:56827980-56827999 Msa0558230:intron 50.0%
!! CAGAGAGCGGGGTATTGTTT+CGG - chr4_1:56828310-56828329 None:intergenic 50.0%
TCGTATTCACGACAGAGAGC+GGG - chr4_1:56828322-56828341 None:intergenic 50.0%
GTGAATACGAAGAGGATGGG+TGG + chr4_1:56828332-56828351 Msa0558230:intron 50.0%
AAGCAGACTCCTTTGCCAAG+TGG - chr4_1:56828399-56828418 None:intergenic 50.0%
TCTCACAATGCAGGAAGAGC+CGG + chr4_1:56828555-56828574 Msa0558230:intron 50.0%
! ACATTGGGGTGACTTGGAAG+AGG + chr4_1:56828591-56828610 Msa0558230:CDS 50.0%
! TGACTTGGAAGAGGAGGAAG+AGG + chr4_1:56828600-56828619 Msa0558230:CDS 50.0%
GGAGGAAGAAGAGGAAGAAG+AGG + chr4_1:56828624-56828643 Msa0558230:CDS 50.0%
GGAAGAAGAGGAAGAAGAGG+AGG + chr4_1:56828627-56828646 Msa0558230:CDS 50.0%
AGAGGAAGAAGAGGAGGAAG+AGG + chr4_1:56828633-56828652 Msa0558230:CDS 50.0%
GGAAGAGGAAGAAGACATCG+AGG + chr4_1:56828648-56828667 Msa0558230:CDS 50.0%
AGAGGAAGAAGACATCGAGG+AGG + chr4_1:56828651-56828670 Msa0558230:CDS 50.0%
GGACCAGTGAAACATTCACG+TGG - chr4_1:56828940-56828959 None:intergenic 50.0%
!! TGTTTTCAGCACACCGACTG+GGG + chr4_1:56829080-56829099 Msa0558230:intron 50.0%
TTGACCTTCGTAAGGAGCAG+AGG + chr4_1:56829121-56829140 Msa0558230:CDS 50.0%
AGCAGAGGAAGGAACCTGAA+AGG + chr4_1:56829136-56829155 Msa0558230:CDS 50.0%
CTTGCTCCTGGAACTTTGCT+TGG + chr4_1:56829280-56829299 Msa0558230:CDS 50.0%
CTCCAGTTATGTGGTTGGCA+CGG + chr4_1:56829415-56829434 Msa0558230:intron 50.0%
TCCAGTTATGTGGTTGGCAC+GGG + chr4_1:56829416-56829435 Msa0558230:intron 50.0%
!! GGATGTCACTTTACTGCCAG+AGG + chr4_1:56829596-56829615 Msa0558230:CDS 50.0%
CACTTTACTGCCAGAGGAGT+TGG + chr4_1:56829602-56829621 Msa0558230:CDS 50.0%
TCCATGACATCCAACTCCTC+TGG - chr4_1:56829615-56829634 None:intergenic 50.0%
GAAATTACGGAGTCAGCGTG+AGG + chr4_1:56829766-56829785 Msa0558230:CDS 50.0%
GCGTGAGGATTTCAGTGACA+TGG + chr4_1:56829781-56829800 Msa0558230:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr4_1:56829905-56829924 None:intergenic 50.0%
TTCCATGAGCAGCAGAGGAT+TGG + chr4_1:56830254-56830273 Msa0558230:three_prime_UTR 50.0%
CCTGTAACTCTCCATCGCAC+GGG + chr4_1:56822543-56822562 Msa0558230:five_prime_UTR 55.0%
! CCATCGTTGCGGGATTTGGT+CGG - chr4_1:56822602-56822621 None:intergenic 55.0%
!! TCTTCGGAGGCGTTAGCGTT+TGG - chr4_1:56822768-56822787 None:intergenic 55.0%
TCGCTACCGTTTACCTCACC+TGG + chr4_1:56823134-56823153 Msa0558230:intron 55.0%
CGCTACCGTTTACCTCACCT+GGG + chr4_1:56823135-56823154 Msa0558230:intron 55.0%
ACTCGCCCAGGTGAGGTAAA+CGG - chr4_1:56823143-56823162 None:intergenic 55.0%
GGATCAAACTCGCCCACATG+AGG - chr4_1:56823205-56823224 None:intergenic 55.0%
AGGCCTGATGTTGTCGAGGT+TGG + chr4_1:56824206-56824225 Msa0558230:intron 55.0%
TACTTGCAGGGGAGCAGTTG+TGG + chr4_1:56824606-56824625 Msa0558230:intron 55.0%
GTTGTGGCAATCACCAAGCC+TGG + chr4_1:56824622-56824641 Msa0558230:intron 55.0%
TGCCCGGGCTGAATTCCAAT+TGG + chr4_1:56824844-56824863 Msa0558230:intron 55.0%
GGCCAATTGGAATTCAGCCC+GGG - chr4_1:56824849-56824868 None:intergenic 55.0%
AGCCGGGGATCTTCAGAGAA+GGG - chr4_1:56826655-56826674 None:intergenic 55.0%
AAGCCGGGGATCTTCAGAGA+AGG - chr4_1:56826656-56826675 None:intergenic 55.0%
!! GAATGGGAGCATTCAAGCCG+GGG - chr4_1:56826670-56826689 None:intergenic 55.0%
!! GGAATGGGAGCATTCAAGCC+GGG - chr4_1:56826671-56826690 None:intergenic 55.0%
!! GGGAATGGGAGCATTCAAGC+CGG - chr4_1:56826672-56826691 None:intergenic 55.0%
TTGAATGCTCCCATTCCCCC+AGG + chr4_1:56826674-56826693 Msa0558230:CDS 55.0%
GGTTATCATCCTGGTGGCTG+GGG + chr4_1:56826707-56826726 Msa0558230:CDS 55.0%
CAGTTCGGGCGTCCACTTTA+TGG + chr4_1:56826899-56826918 Msa0558230:CDS 55.0%
CAGAAGTGACGGCCAACTTC+GGG - chr4_1:56827687-56827706 None:intergenic 55.0%
TGGCCGTCACTTCTGTCCAT+TGG + chr4_1:56827692-56827711 Msa0558230:intron 55.0%
GGCCGTCACTTCTGTCCATT+GGG + chr4_1:56827693-56827712 Msa0558230:intron 55.0%
! ACCCTGCTACTGTCGACTGT+CGG + chr4_1:56827759-56827778 Msa0558230:CDS 55.0%
TCCGACAGTCGACAGTAGCA+GGG - chr4_1:56827763-56827782 None:intergenic 55.0%
CTTGGAGTTACGGTCCCTAC+AGG + chr4_1:56827849-56827868 Msa0558230:CDS 55.0%
CGTATTCACGACAGAGAGCG+GGG - chr4_1:56828321-56828340 None:intergenic 55.0%
! AGAGGATGGGTGGCACTGAA+TGG + chr4_1:56828342-56828361 Msa0558230:intron 55.0%
! GAGGATGGGTGGCACTGAAT+GGG + chr4_1:56828343-56828362 Msa0558230:intron 55.0%
! TGGCTGTTGCCACTTGGCAA+AGG + chr4_1:56828387-56828406 Msa0558230:intron 55.0%
! TTGGGGTGACTTGGAAGAGG+AGG + chr4_1:56828594-56828613 Msa0558230:CDS 55.0%
CTTGGAAGAGGAGGAAGAGG+AGG + chr4_1:56828603-56828622 Msa0558230:CDS 55.0%
GGAAGAGGAGGAGGAAGAAG+AGG + chr4_1:56828615-56828634 Msa0558230:CDS 55.0%
GGAAGAAGACATCGAGGAGG+AGG + chr4_1:56828654-56828673 Msa0558230:CDS 55.0%
!! GAGGAGGAGGCACTTGAAGA+TGG + chr4_1:56828667-56828686 Msa0558230:CDS 55.0%
CCTTCCTCTGCTCCTTACGA+AGG - chr4_1:56829128-56829147 None:intergenic 55.0%
CCTTCGTAAGGAGCAGAGGA+AGG + chr4_1:56829125-56829144 Msa0558230:CDS 55.0%
GCCAGAGGAGTTGGATGTCA+TGG + chr4_1:56829611-56829630 Msa0558230:CDS 55.0%
AGGGATAACCTTGGCGCAAC+TGG + chr4_1:56829894-56829913 Msa0558230:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr4_1:56829940-56829959 Msa0558230:intron 55.0%
CTAAAGCTCCCGCATACGCA+AGG - chr4_1:56830036-56830055 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr4_1:56830041-56830060 Msa0558230:intron 55.0%
AGCCAATCCTCTGCTGCTCA+TGG - chr4_1:56830259-56830278 None:intergenic 55.0%
CCCGTGCGATGGAGAGTTAC+AGG - chr4_1:56822546-56822565 None:intergenic 60.0%
CCGACCAAATCCCGCAACGA+TGG + chr4_1:56822599-56822618 Msa0558230:exon 60.0%
GTTTCTGCGGCCATCGTTGC+GGG - chr4_1:56822612-56822631 None:intergenic 60.0%
CGTTTCTGCGGCCATCGTTG+CGG - chr4_1:56822613-56822632 None:intergenic 60.0%
GGATTGAACTCGCCCAGGTG+AGG - chr4_1:56823150-56823169 None:intergenic 60.0%
GGGAAGGATTGAACTCGCCC+AGG - chr4_1:56823155-56823174 None:intergenic 60.0%
CGCAAGGCCTGATGTTGTCG+AGG + chr4_1:56824202-56824221 Msa0558230:CDS 60.0%
CTGTACCTGTACCCAGGCAC+TGG + chr4_1:56824417-56824436 Msa0558230:CDS 60.0%
TGACACCAGTGCCTGGGTAC+AGG - chr4_1:56824425-56824444 None:intergenic 60.0%
TCTGTGTGGCCACCCACAAG+AGG + chr4_1:56825083-56825102 Msa0558230:intron 60.0%
GGGCAAGCCTCCTGTTGATG+AGG + chr4_1:56826727-56826746 Msa0558230:CDS 60.0%
AGTGACGGCCAACTTCGGGA+GGG - chr4_1:56827683-56827702 None:intergenic 60.0%
AAGTGACGGCCAACTTCGGG+AGG - chr4_1:56827684-56827703 None:intergenic 60.0%
CTCCGACAGTCGACAGTAGC+AGG - chr4_1:56827764-56827783 None:intergenic 60.0%
TGGGTGTGGCTGTTGCCACT+TGG + chr4_1:56828381-56828400 Msa0558230:intron 60.0%
GGAAGAGGAGGAAGAGGAGG+AGG + chr4_1:56828606-56828625 Msa0558230:CDS 60.0%
! TTTCAGCACACCGACTGGGG+TGG + chr4_1:56829083-56829102 Msa0558230:intron 60.0%
TCAGGTGTCTCCACCCCAGT+CGG - chr4_1:56829096-56829115 None:intergenic 60.0%
GCCCGTGCCAACCACATAAC+TGG - chr4_1:56829420-56829439 None:intergenic 60.0%
ACGGGCACCCAAGACAAGTC+AGG + chr4_1:56829434-56829453 Msa0558230:CDS 60.0%
CGGGCACCCAAGACAAGTCA+GGG + chr4_1:56829435-56829454 Msa0558230:CDS 60.0%
GGGCACCCAAGACAAGTCAG+GGG + chr4_1:56829436-56829455 Msa0558230:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr4_1:56830009-56830028 Msa0558230:intron 60.0%
CATACGCAAGGTCCGGGAAG+GGG - chr4_1:56830024-56830043 None:intergenic 60.0%
GCATACGCAAGGTCCGGGAA+GGG - chr4_1:56830025-56830044 None:intergenic 60.0%
CTTCCCGGACCTTGCGTATG+CGG + chr4_1:56830024-56830043 Msa0558230:intron 60.0%
TTCCCGGACCTTGCGTATGC+GGG + chr4_1:56830025-56830044 Msa0558230:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr4_1:56830042-56830061 Msa0558230:intron 60.0%
GCGGCCATCGTTGCGGGATT+TGG - chr4_1:56822606-56822625 None:intergenic 65.0%
CACGGAGGAGGAGAACCCTC+AGG - chr4_1:56826513-56826532 None:intergenic 65.0%
CTGAGGGTTCTCCTCCTCCG+TGG + chr4_1:56826511-56826530 Msa0558230:CDS 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr4_1:56830011-56830030 None:intergenic 65.0%
CGCATACGCAAGGTCCGGGA+AGG - chr4_1:56830026-56830045 None:intergenic 65.0%
CTCCCGCATACGCAAGGTCC+GGG - chr4_1:56830030-56830049 None:intergenic 65.0%
GCTCCCGCATACGCAAGGTC+CGG - chr4_1:56830031-56830050 None:intergenic 65.0%
! GAGGGTGGGTTCCCGTGCGA+TGG - chr4_1:56822557-56822576 None:intergenic 70.0%
CGCACGGGAACCCACCCTCT+CGG + chr4_1:56822558-56822577 Msa0558230:five_prime_UTR 70.0%
GCTTCCGGCGACGGCGACGA+CGG - chr4_1:56822716-56822735 None:intergenic 75.0%
GGAGGCTTGCCCCAGCCACC+AGG - chr4_1:56826719-56826738 None:intergenic 75.0%
! GCGACCGTCGTCGCCGTCGC+CGG + chr4_1:56822709-56822728 Msa0558230:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 56822460 56830558 56822460 ID=Msa0558230;Name=Msa0558230
chr4_1 mRNA 56822460 56830558 56822460 ID=Msa0558230-mRNA-1;Parent=Msa0558230;Name=Msa0558230-mRNA-1;_AED=0.23;_eAED=0.25;_QI=158|0.7|0.80|0.85|1|1|21|378|723
chr4_1 exon 56822460 56822842 56822460 ID=Msa0558230-mRNA-1:exon:17163;Parent=Msa0558230-mRNA-1
chr4_1 exon 56823741 56823860 56823741 ID=Msa0558230-mRNA-1:exon:17164;Parent=Msa0558230-mRNA-1
chr4_1 exon 56823942 56824067 56823942 ID=Msa0558230-mRNA-1:exon:17165;Parent=Msa0558230-mRNA-1
chr4_1 exon 56824161 56824223 56824161 ID=Msa0558230-mRNA-1:exon:17166;Parent=Msa0558230-mRNA-1
chr4_1 exon 56824356 56824463 56824356 ID=Msa0558230-mRNA-1:exon:17167;Parent=Msa0558230-mRNA-1
chr4_1 exon 56824966 56825043 56824966 ID=Msa0558230-mRNA-1:exon:17168;Parent=Msa0558230-mRNA-1
chr4_1 exon 56825610 56825702 56825610 ID=Msa0558230-mRNA-1:exon:17169;Parent=Msa0558230-mRNA-1
chr4_1 exon 56825827 56825913 56825827 ID=Msa0558230-mRNA-1:exon:17170;Parent=Msa0558230-mRNA-1
chr4_1 exon 56826447 56826548 56826447 ID=Msa0558230-mRNA-1:exon:17171;Parent=Msa0558230-mRNA-1
chr4_1 exon 56826629 56826748 56826629 ID=Msa0558230-mRNA-1:exon:17172;Parent=Msa0558230-mRNA-1
chr4_1 exon 56826833 56827002 56826833 ID=Msa0558230-mRNA-1:exon:17173;Parent=Msa0558230-mRNA-1
chr4_1 exon 56827539 56827634 56827539 ID=Msa0558230-mRNA-1:exon:17174;Parent=Msa0558230-mRNA-1
chr4_1 exon 56827733 56827904 56827733 ID=Msa0558230-mRNA-1:exon:17175;Parent=Msa0558230-mRNA-1
chr4_1 exon 56828568 56828716 56828568 ID=Msa0558230-mRNA-1:exon:17176;Parent=Msa0558230-mRNA-1
chr4_1 exon 56829089 56829170 56829089 ID=Msa0558230-mRNA-1:exon:17177;Parent=Msa0558230-mRNA-1
chr4_1 exon 56829256 56829314 56829256 ID=Msa0558230-mRNA-1:exon:17178;Parent=Msa0558230-mRNA-1
chr4_1 exon 56829421 56829466 56829421 ID=Msa0558230-mRNA-1:exon:17179;Parent=Msa0558230-mRNA-1
chr4_1 exon 56829561 56829652 56829561 ID=Msa0558230-mRNA-1:exon:17180;Parent=Msa0558230-mRNA-1
chr4_1 exon 56829742 56829811 56829742 ID=Msa0558230-mRNA-1:exon:17181;Parent=Msa0558230-mRNA-1
chr4_1 exon 56829943 56829987 56829943 ID=Msa0558230-mRNA-1:exon:17182;Parent=Msa0558230-mRNA-1
chr4_1 exon 56830112 56830558 56830112 ID=Msa0558230-mRNA-1:exon:17183;Parent=Msa0558230-mRNA-1
chr4_1 five_prime_UTR 56822460 56822617 56822460 ID=Msa0558230-mRNA-1:five_prime_utr;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56822618 56822842 56822618 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56823741 56823860 56823741 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56823942 56824067 56823942 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56824161 56824223 56824161 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56824356 56824463 56824356 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56824966 56825043 56824966 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56825610 56825702 56825610 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56825827 56825913 56825827 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56826447 56826548 56826447 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56826629 56826748 56826629 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56826833 56827002 56826833 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56827539 56827634 56827539 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56827733 56827904 56827733 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56828568 56828716 56828568 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56829089 56829170 56829089 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56829256 56829314 56829256 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56829421 56829466 56829421 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56829561 56829652 56829561 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56829742 56829811 56829742 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56829943 56829987 56829943 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 CDS 56830112 56830180 56830112 ID=Msa0558230-mRNA-1:cds;Parent=Msa0558230-mRNA-1
chr4_1 three_prime_UTR 56830181 56830558 56830181 ID=Msa0558230-mRNA-1:three_prime_utr;Parent=Msa0558230-mRNA-1
Gene Sequence

>Msa0558230

ATGGCCGCAGAAACGCTAGTGCATCAAAACGGTGTCGTTTCCAACGGAGATCTTGGCTCCAAAACCGCCACTGTAAAAAAATCTCGGGAGAGCGACCGTCGTCGCCGTCGCCGGAAGCAAAAGAAAATCAACAAAGCCTCTAAGGAACCAAACGCTAACGCCTCCGAAGACGATACTGAAGCAAAAGAGAATACTGAACAACAACAACAACACCAACAACAACAGGTTGTTGAACAAGTTGAAATTGAGTATGTACCGGAAAAAGCAGAGCTATATGAAGGCTTGGATGAGGAATTTAAGAAAATCTTTGAGAAATTTAGTTTCAGCGAGGTTATTGATTCAGAGGATAATGATAAGAAGGATGAGTCGGCAGAAAATGCAATTACAAAGAAAAAGGCAGACTCTGATTCTGAAGAGGAAGAAGATGATAACGAGCAAAAAGAGAAAGGAGTCTCAAACAAGAAGAAAAAGCTTCAACGCAGGATGAAGATCGCTGAGCTGAAACAGATTAGCGCAAGGCCTGATGTTGTCGAGGTGTGGGATGCTACTTCAGCAGATCCAAAGTTGTTGGTATTCTTGAAGTCTTACCGAAATACTGTACCTGTACCCAGGCACTGGTGTCAAAAGAGAAAATTTCTGCAGGGGAAAAGAGGTATAGAGAAACAACCTTTTCAGCTTCCTGATTTTATTGCTGCCACAGGAATTGAGAAAATCAGACAGGCTTATATTGAGAAAGAGGACAGCAAAAAGTTGAAACAAAAGCAACGGGAACGCATGCAACCAAAAATGGGGAAGATGGATATTGATTATCAGGTTCTTCATGATGCATTCTTTAAATACCAGACAAAGCCAAAGCTGTCATCTCTTGGGGACTTGTATCATGAAGGAAAAGAATTTGAGGTAAAGTTGAGGGAGATGAAACCTGGCATGTTATCACATGAGTTGAAAGAAGCTCTTGGTATGCCTGAGGGTTCTCCTCCTCCGTGGCTTATTAACATGCAGAGATACGGTCCTCCACCATCATACCCTTCTCTGAAGATCCCCGGCTTGAATGCTCCCATTCCCCCAGGAGCTAGTTTTGGTTATCATCCTGGTGGCTGGGGCAAGCCTCCTGTTGATGAGGGGCTTTCAACACCCCCTCATCCCCCTTTTCACTTCATTGACTTCTTTACTTGTCTGCATCTTGAGCAGTTCGGGCGTCCACTTTATGGAGATGTTTTTGGTGTCCATCAGCAAGATCAGCCTAATTATGAGGTTGGTTTACATAAAAGTTCCACTTTGCAATTAGAGGGGACATTGTACACGGCTGGTTCTATTCAAACATCAGTGGTACTGGGATCAAATAAGATTTTTTTTGCCTCACTTGATTCATTCTCCAGTGAAAAGAGCTTTGACAACTATCGTAGTGAATCTCACCCTGCTACTGTCGACTGTCGGAGTTACTTAGTTCTGTGTGATGAGGGTAAAGATCAGGACAGATCTTCAGTGGCACTGCAATGTGTTGCTTGGAGTTACGGTCCCTACAGGAGAGACCATAACACCTGTAGAAACACTGTTTTGGAAGAGCCGGTAGATAAAACAAAACATTGGGGTGACTTGGAAGAGGAGGAAGAGGAGGAGGAAGAAGAGGAAGAAGAGGAGGAAGAGGAAGAAGACATCGAGGAGGAGGCACTTGAAGATGGTATTCAATCTGTTGATAGTATGTCAAGCACACCGACTGGGGTGGAGACACCTGATGTTATTGACCTTCGTAAGGAGCAGAGGAAGGAACCTGAAAGGCCTCTTTATCAAGTCCTTGAAGAAAAAGAGGAAAAACTTGCTCCTGGAACTTTGCTTGGAACTACACACACTTATGTGGTTGGCACGGGCACCCAAGACAAGTCAGGGGCAAAAAGGGTTGATTTGCTTAAAGGTCAAAAGACAGATAGAGTGGATGTCACTTTACTGCCAGAGGAGTTGGATGTCATGGAGAACGTTTTACATACCAGGTATAATGAAGCAAGGGAGGAAGAGAAATTACGGAGTCAGCGTGAGGATTTCAGTGACATGGTTGCTGAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGAATGAGAAGAAGAGGAAGAGGAAGCAAGAAAAAGATGGCAAGTCCAAGAAAAAAGACTTCAAGTTTTAA
Protein sequence

>Msa0558230

MAAETLVHQNGVVSNGDLGSKTATVKKSRESDRRRRRRKQKKINKASKEPNANASEDDTEAKENTEQQQQHQQQQVVEQVEIEYVPEKAELYEGLDEEFKKIFEKFSFSEVIDSEDNDKKDESAENAITKKKADSDSEEEEDDNEQKEKGVSNKKKKLQRRMKIAELKQISARPDVVEVWDATSADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLSSLGDLYHEGKEFEVKLREMKPGMLSHELKEALGMPEGSPPPWLINMQRYGPPPSYPSLKIPGLNAPIPPGASFGYHPGGWGKPPVDEGLSTPPHPPFHFIDFFTCLHLEQFGRPLYGDVFGVHQQDQPNYEVGLHKSSTLQLEGTLYTAGSIQTSVVLGSNKIFFASLDSFSSEKSFDNYRSESHPATVDCRSYLVLCDEGKDQDRSSVALQCVAWSYGPYRRDHNTCRNTVLEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEDIEEEALEDGIQSVDSMSSTPTGVETPDVIDLRKEQRKEPERPLYQVLEEKEEKLAPGTLLGTTHTYVVGTGTQDKSGAKRVDLLKGQKTDRVDVTLLPEELDVMENVLHTRYNEAREEEKLRSQREDFSDMVAEVTGSSPGNSLLCKNRNEKKRKRKQEKDGKSKKKDFKF*