AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896250 MtrunA17_Chr6g0480671 98.158 380 7 0 262 641 389 768 0.0 774
Msa0896250 MtrunA17_Chr6g0480671 93.156 263 18 0 1 263 1 263 3.07e-178 525
Msa0896250 MtrunA17_Chr6g0481021 71.622 370 102 2 262 628 321 690 3.91e-172 507
Msa0896250 MtrunA17_Chr6g0481021 61.491 161 61 1 104 263 33 193 3.38e-57 205
Msa0896250 MtrunA17_Chr6g0480851 59.395 463 156 4 183 641 325 759 3.87e-164 488
Msa0896250 MtrunA17_Chr6g0480851 54.753 263 110 1 1 263 1 254 9.42e-91 297
Msa0896250 MtrunA17_Chr5g0395421 64.171 374 112 6 254 616 8 370 4.40e-150 439
Msa0896250 MtrunA17_Chr6g0480781 59.536 388 139 4 262 641 367 744 1.74e-149 451
Msa0896250 MtrunA17_Chr6g0480781 49.621 264 107 4 1 263 1 239 5.86e-75 255
Msa0896250 MtrunA17_Chr6g0480681 61.458 384 136 4 262 641 337 712 1.67e-145 440
Msa0896250 MtrunA17_Chr6g0480681 32.319 263 99 6 1 263 1 184 2.77e-32 133
Msa0896250 MtrunA17_Chr6g0480741 60.000 380 141 4 262 636 309 682 2.28e-138 419
Msa0896250 MtrunA17_Chr6g0480741 59.184 98 40 0 166 263 88 185 9.33e-30 125
Msa0896250 MtrunA17_Chr6g0480741 40.230 87 47 1 1 87 1 82 3.72e-12 69.7
Msa0896250 MtrunA17_Chr6g0480771 58.687 259 102 2 385 641 12 267 4.84e-91 283
Msa0896250 MtrunA17_Chr4g0001481 41.114 377 195 9 260 623 297 659 9.50e-81 270
Msa0896250 MtrunA17_Chr6g0480841 62.439 205 75 1 439 641 2 206 2.98e-80 253
Msa0896250 MtrunA17_Chr4g0073941 40.587 409 203 13 251 638 288 677 4.27e-80 268
Msa0896250 MtrunA17_Chr6g0480791 49.621 264 110 3 1 263 1 242 4.54e-80 255
Msa0896250 MtrunA17_Chr2g0305771 43.653 323 163 5 319 633 301 612 5.86e-74 251
Msa0896250 MtrunA17_Chr3g0126541 42.991 321 162 7 319 629 330 639 1.36e-72 248
Msa0896250 MtrunA17_Chr3g0126541 34.722 72 47 0 192 263 80 151 1.23e-11 67.8
Msa0896250 MtrunA17_Chr3g0139071 43.598 328 160 6 319 635 331 644 1.46e-72 248
Msa0896250 MtrunA17_Chr3g0125651 38.520 392 213 9 262 639 233 610 2.34e-72 246
Msa0896250 MtrunA17_Chr1g0181121 38.845 381 199 9 262 629 241 600 3.95e-70 240
Msa0896250 MtrunA17_Chr7g0228181 40.407 344 181 7 298 628 275 607 5.22e-70 240
Msa0896250 MtrunA17_Chr1g0158861 40.606 330 175 7 319 638 332 650 8.33e-70 240
Msa0896250 MtrunA17_Chr1g0158861 28.346 127 79 2 149 263 27 153 4.33e-12 69.3
Msa0896250 MtrunA17_Chr4g0028861 37.831 378 196 10 262 623 321 675 1.31e-67 233
Msa0896250 MtrunA17_Chr4g0028861 36.111 72 45 1 192 263 123 193 2.03e-11 67.0
Msa0896250 MtrunA17_Chr2g0326871 36.224 392 215 9 262 639 274 644 9.14e-67 231
Msa0896250 MtrunA17_Chr2g0326871 39.437 71 42 1 193 263 77 146 4.63e-12 69.3
Msa0896250 MtrunA17_Chr7g0275581 39.385 325 176 5 319 632 334 648 1.27e-66 231
Msa0896250 MtrunA17_Chr7g0275581 36.111 72 46 0 192 263 82 153 4.90e-11 65.9
Msa0896250 MtrunA17_Chr5g0395411 46.212 264 106 4 1 263 1 229 1.25e-65 220
Msa0896250 MtrunA17_Chr8g0360821 38.421 380 209 11 262 629 262 628 6.87e-65 226
Msa0896250 MtrunA17_Chr8g0347121 37.216 352 169 6 319 628 313 654 2.63e-64 225
Msa0896250 MtrunA17_Chr8g0347121 36.620 71 45 0 193 263 60 130 6.86e-11 65.5
Msa0896250 MtrunA17_Chr2g0318561 39.233 339 188 8 304 635 130 457 5.71e-64 219
Msa0896250 MtrunA17_Chr7g0218341 35.356 379 223 7 260 628 309 675 2.16e-55 200
Msa0896250 MtrunA17_Chr6g0480751 50.467 107 53 0 157 263 62 168 8.12e-28 112
Msa0896250 MtrunA17_Chr6g0480831 69.863 73 21 1 354 426 1 72 1.57e-20 85.9
Msa0896250 MtrunA17_Chr6g0480821 38.182 110 60 2 262 369 106 209 2.20e-15 75.9
Msa0896250 MtrunA17_Chr5g0434371 23.043 230 168 6 335 558 278 504 3.55e-12 69.7
Msa0896250 MtrunA17_Chr6g0480761 33.898 118 67 3 239 349 52 165 6.59e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896250 AT3G17690.1 65.608 378 124 3 262 639 356 727 2.94e-170 503
Msa0896250 AT3G17690.1 42.797 236 122 4 29 263 5 228 3.44e-51 189
Msa0896250 AT3G17700.1 71.468 361 98 2 262 622 390 745 2.87e-168 499
Msa0896250 AT3G17700.1 43.019 265 137 5 5 263 6 262 3.37e-58 209
Msa0896250 AT3G17700.2 73.171 287 72 2 262 548 390 671 5.80e-133 406
Msa0896250 AT3G17700.2 43.019 265 137 5 5 263 6 262 2.48e-58 208
Msa0896250 AT3G17690.2 66.312 282 91 2 262 543 356 633 3.59e-127 390
Msa0896250 AT3G17690.2 42.797 236 122 4 29 263 5 228 2.32e-51 188
Msa0896250 AT1G19780.2 41.902 389 196 10 254 628 78 450 1.06e-84 276
Msa0896250 AT1G19780.1 41.902 389 196 10 254 628 289 661 4.53e-83 277
Msa0896250 AT1G15990.1 40.665 391 198 10 254 628 283 655 2.10e-80 270
Msa0896250 AT4G30560.5 40.789 380 203 7 260 628 273 641 2.00e-78 263
Msa0896250 AT4G30560.2 40.789 380 203 7 260 628 273 641 2.00e-78 263
Msa0896250 AT4G30560.3 40.789 380 203 7 260 628 273 641 2.00e-78 263
Msa0896250 AT4G30560.1 40.789 380 203 7 260 628 299 667 2.54e-78 264
Msa0896250 AT4G30560.4 40.789 380 203 7 260 628 299 667 2.54e-78 264
Msa0896250 AT5G57940.1 40.625 384 197 10 260 628 284 651 3.25e-77 261
Msa0896250 AT5G57940.2 40.625 384 197 10 260 628 284 651 3.25e-77 261
Msa0896250 AT5G57940.3 40.625 384 197 10 260 628 277 644 3.28e-77 260
Msa0896250 AT2G23980.6 40.153 391 190 10 260 628 272 640 6.20e-77 260
Msa0896250 AT2G23980.3 35.976 492 263 15 162 628 226 690 6.98e-77 261
Msa0896250 AT2G23980.2 35.976 492 263 15 162 628 226 690 6.98e-77 261
Msa0896250 AT2G23980.8 35.976 492 263 15 162 628 226 690 6.98e-77 261
Msa0896250 AT2G23980.7 35.976 492 263 15 162 628 226 690 6.98e-77 261
Msa0896250 AT2G23980.9 40.153 391 190 10 260 628 299 667 1.01e-76 260
Msa0896250 AT2G23980.10 40.153 391 190 10 260 628 299 667 1.01e-76 260
Msa0896250 AT2G23980.1 40.153 391 190 10 260 628 299 667 1.01e-76 260
Msa0896250 AT2G23980.4 40.153 391 190 10 260 628 299 667 1.01e-76 260
Msa0896250 AT2G23980.5 40.153 391 190 10 260 628 299 667 1.01e-76 260
Msa0896250 AT4G30360.1 39.175 388 191 10 262 629 273 635 6.48e-75 254
Msa0896250 AT4G01010.1 38.462 390 214 10 260 638 264 638 1.66e-74 253
Msa0896250 AT4G01010.2 38.462 390 214 10 260 638 264 638 1.66e-74 253
Msa0896250 AT1G01340.1 42.073 328 166 7 319 637 314 626 3.26e-73 249
Msa0896250 AT1G01340.2 42.073 328 166 7 319 637 319 631 3.33e-73 249
Msa0896250 AT5G53130.1 43.175 315 157 7 319 623 332 634 7.48e-73 249
Msa0896250 AT2G28260.2 39.535 387 191 11 260 628 223 584 8.92e-72 244
Msa0896250 AT2G28260.1 39.018 387 193 10 260 628 263 624 1.59e-71 244
Msa0896250 AT2G24610.1 42.105 323 167 6 319 632 328 639 8.21e-70 241
Msa0896250 AT2G24610.2 42.105 323 167 6 319 632 343 654 2.13e-69 240
Msa0896250 AT5G14870.1 33.189 461 257 12 186 631 182 606 9.40e-67 232
Msa0896250 AT2G46430.1 34.052 464 265 11 190 637 195 633 1.15e-66 232
Msa0896250 AT2G46430.2 34.052 464 265 11 190 637 195 633 1.15e-66 232
Msa0896250 AT3G48010.1 38.144 388 204 12 262 630 243 613 1.72e-66 231
Msa0896250 AT5G54250.2 36.412 379 217 11 262 629 284 649 1.40e-60 215
Msa0896250 AT5G54250.2 37.500 72 45 0 192 263 78 149 1.24e-11 68.2
Msa0896250 AT5G54250.1 36.412 379 217 11 262 629 284 649 1.40e-60 215
Msa0896250 AT5G54250.1 37.500 72 45 0 192 263 78 149 1.24e-11 68.2
Msa0896250 AT5G54250.4 36.412 379 217 11 262 629 284 649 1.40e-60 215
Msa0896250 AT5G54250.4 37.500 72 45 0 192 263 78 149 1.24e-11 68.2
Msa0896250 AT3G17690.3 61.818 165 59 2 262 426 356 516 8.40e-58 203
Msa0896250 AT3G17690.3 42.797 236 122 4 29 263 5 228 7.19e-52 187
Msa0896250 AT5G54250.3 35.884 379 214 12 262 629 284 644 5.43e-57 205
Msa0896250 AT5G54250.3 37.500 72 45 0 192 263 78 149 1.21e-11 68.2
Msa0896250 AT5G15410.1 35.106 376 219 7 260 622 314 677 3.48e-55 200
Msa0896250 AT5G15410.2 35.106 376 219 7 260 622 313 676 5.79e-55 199
Msa0896250 AT2G46450.3 34.615 390 201 13 262 628 188 546 1.18e-51 189
Msa0896250 AT2G46450.2 34.615 390 201 13 262 628 201 559 1.24e-51 189
Msa0896250 AT2G46440.2 38.323 334 170 9 319 637 101 413 2.17e-51 184
Msa0896250 AT2G46450.4 34.615 390 201 13 262 628 224 582 2.19e-51 188
Msa0896250 AT2G46450.1 34.615 390 201 13 262 628 224 582 2.19e-51 188
Msa0896250 AT2G46440.1 35.678 398 204 12 262 637 224 591 1.43e-49 183

Find 147 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATGTATATTCATCATTT+TGG 0.038484 6_1:-86049426 Msa0896250:CDS
CTTCAAGGTCTGCTGCTCTT+AGG 0.208740 6_1:+86046945 None:intergenic
AGTTAAGAACAATACATTTA+TGG 0.225920 6_1:+86051380 None:intergenic
TCTAACAAGTACAACATTTC+TGG 0.226102 6_1:-86046333 Msa0896250:three_prime_UTR
CTTGATGGATGATCCTATTC+TGG 0.226291 6_1:-86047794 Msa0896250:CDS
GTTTATGTTAATGTTAATAT+TGG 0.258866 6_1:+86046305 None:intergenic
CTACCTGAAGGATAATATTT+AGG 0.266804 6_1:+86051302 None:intergenic
TCAGGGTCATTTGACTGTTT+TGG 0.269855 6_1:+86052673 None:intergenic
TTCTTCAGGCTCTTGGAAAA+AGG 0.291731 6_1:-86048490 Msa0896250:intron
GTGTCCTAGGTACAAGATTC+TGG 0.292678 6_1:+86052638 None:intergenic
CAATGATTCCCATCGTAAAA+AGG 0.298027 6_1:+86048561 None:intergenic
CTTAACCCTTAGTCACATTC+AGG 0.301073 6_1:-86053929 Msa0896250:five_prime_UTR
GTCATCAGTTACCAGTTATT+AGG 0.304334 6_1:-86053753 Msa0896250:five_prime_UTR
CAAAACTTTCTTCAGGCTCT+TGG 0.320270 6_1:-86048497 Msa0896250:CDS
TTTCCTAAATATTATCCTTC+AGG 0.332874 6_1:-86051305 Msa0896250:intron
CAGTTTCAGAATGTTCTCTA+TGG 0.335255 6_1:-86051663 Msa0896250:CDS
CTTTCCACTGGTTTGCTCAT+TGG 0.337396 6_1:+86052439 None:intergenic
ATATCCCTCTGAAGATCTTC+TGG 0.337480 6_1:+86047960 None:intergenic
ACGATGGGAATCATTGGATT+AGG 0.345089 6_1:-86048554 Msa0896250:CDS
ATGCTTTAGCTTCAAATAGT+TGG 0.345242 6_1:-86053793 Msa0896250:intron
TCCTCAAGAATCTTGCAAAA+AGG 0.354000 6_1:+86046912 None:intergenic
ACAAAGCGATTTGAAAAGTT+CGG 0.355023 6_1:-86052263 Msa0896250:CDS
CTTCTTGCTATCTGTGGATA+AGG 0.358848 6_1:-86051490 Msa0896250:intron
TTAGGTATGAATCACCTTAC+TGG 0.362437 6_1:-86046683 Msa0896250:intron
ACTCAAAATCTCCTAATAAC+TGG 0.378356 6_1:+86053742 None:intergenic
TTCAAGGTCTGCTGCTCTTA+GGG 0.379496 6_1:+86046946 None:intergenic
AAGAATTCCAAGACAAAGAT+TGG 0.380140 6_1:-86047014 Msa0896250:CDS
AAACATACAAAACTTTCTTC+AGG 0.393913 6_1:-86048504 Msa0896250:CDS
AGGGACCAGATTGGGCTCAT+TGG 0.395797 6_1:-86049552 Msa0896250:CDS
AAATTAGTATCCCTTTCATA+TGG 0.407197 6_1:+86052577 None:intergenic
CATTCTTCTTGCCCAATCCT+TGG 0.408588 6_1:+86051635 None:intergenic
TTGAGGAGTCCTGGTGTTCA+AGG 0.408867 6_1:-86046896 Msa0896250:CDS
TGGTGTCTTGAGCATACTTC+AGG 0.409205 6_1:-86047592 Msa0896250:CDS
TTCTGCCCGAAAAGATTTCC+AGG 0.409816 6_1:+86052472 None:intergenic
GACAAGCTGAACGTTACAAC+TGG 0.410522 6_1:-86048028 Msa0896250:CDS
ACCTGTTTGGAGCTGACAAC+TGG 0.410853 6_1:+86053697 None:intergenic
TTCATCCAATGAGCCCAATC+TGG 0.413387 6_1:+86049547 None:intergenic
CAAAGCGATTTGAAAAGTTC+GGG 0.414050 6_1:-86052262 Msa0896250:CDS
TGAGTAGCCTTGAAGTAAGT+TGG 0.415047 6_1:+86052286 None:intergenic
TTGCTAACCAATCTTTGTCT+TGG 0.415706 6_1:+86047007 None:intergenic
TACTTGTCCAACTTACTTCA+AGG 0.421951 6_1:-86052293 Msa0896250:CDS
GGTGTATGAGTAACATATAA+TGG 0.422666 6_1:+86052493 None:intergenic
TGTTCATTCATGCCACATAA+AGG 0.423457 6_1:+86052400 None:intergenic
CAAACATTTCCTTCAGATAG+AGG 0.426516 6_1:+86047634 None:intergenic
GCAAGATTCTTGAGGAGTCC+TGG 0.431788 6_1:-86046905 Msa0896250:CDS
TTGTCTTAGTCTCTCGCAAA+TGG 0.433225 6_1:+86047768 None:intergenic
TTCTGTATCTCCATGCAACC+TGG 0.438729 6_1:+86046637 None:intergenic
AAAGGCTTGTAACTTCTTCA+AGG 0.442891 6_1:+86046930 None:intergenic
CTATGGTGATGCCAAGGATT+GGG 0.444295 6_1:-86051646 Msa0896250:CDS
ATAATAAACTTGTACATCAA+TGG 0.444677 6_1:-86051569 Msa0896250:CDS
CAAAGAATGAAGGATTCATA+AGG 0.445191 6_1:+86053881 None:intergenic
GCCAGTTGTCAGCTCCAAAC+AGG 0.446355 6_1:-86053698 Msa0896250:intron
TAAGAGAGTAAAGACCTGTT+TGG 0.448777 6_1:+86053684 None:intergenic
AGTGCTTGTTTCACAGAAGA+TGG 0.448961 6_1:-86049511 Msa0896250:CDS
TGGCAATATACTATCAAAGT+TGG 0.449338 6_1:+86053717 None:intergenic
TTGGAGAGTATTGGTGAAGA+TGG 0.449435 6_1:-86047667 Msa0896250:CDS
TCTCTTTAGATTTGTTAAGA+AGG 0.453607 6_1:-86047928 Msa0896250:intron
GGATTAGCATCTGACAGAAT+CGG 0.453968 6_1:+86052694 None:intergenic
ATATCAAAAGGGACCAGATT+GGG 0.459351 6_1:-86049560 Msa0896250:CDS
ACATATAATGGACCACTCAT+TGG 0.460725 6_1:+86052505 None:intergenic
TGATGTACAAGTTTATTATG+TGG 0.462975 6_1:+86051573 None:intergenic
GATCATCTGCTAAGCGCCTA+TGG 0.464031 6_1:+86048224 None:intergenic
TTCTGGAATCTAGAACCGTC+AGG 0.465476 6_1:+86052655 None:intergenic
AACCATGGAAGAAAAGTAAG+AGG 0.468267 6_1:+86053840 None:intergenic
AAACTCATTGATTGTGGTCA+TGG 0.469014 6_1:-86049595 Msa0896250:CDS
TGCTTTGCCTTGTTCAACAT+GGG 0.471301 6_1:+86054076 None:intergenic
TTTACTAAGGTCTGGTCAGT+TGG 0.472261 6_1:-86052341 Msa0896250:CDS
TCGCAAATGGCATCCAGAAT+AGG 0.476951 6_1:+86047781 None:intergenic
TTACTAAGGTCTGGTCAGTT+GGG 0.478858 6_1:-86052340 Msa0896250:CDS
AATGAACATTTACTAAGGTC+TGG 0.482643 6_1:-86052349 Msa0896250:CDS
TTCGGGTCTGTTCAATCCTA+AGG 0.488093 6_1:-86052245 Msa0896250:intron
TGAAAGGGATACTAATTTCA+AGG 0.489370 6_1:-86052572 Msa0896250:CDS
TCTATGGTGATGCCAAGGAT+TGG 0.491010 6_1:-86051647 Msa0896250:CDS
CACTGGTTTGCTCATTGGCA+CGG 0.491273 6_1:+86052444 None:intergenic
AAGCACTCAGGAATATCAAA+AGG 0.491651 6_1:-86049572 Msa0896250:CDS
AAAATGCCTCCACATTTGTT+AGG 0.493538 6_1:+86046969 None:intergenic
TCTCGCAGCTACGCGAATCC+AGG 0.494243 6_1:-86046655 Msa0896250:CDS
TTGCTTTGCCTTGTTCAACA+TGG 0.497829 6_1:+86054075 None:intergenic
AATGACAAGGTGAGATGTAA+AGG 0.499394 6_1:-86054100 None:intergenic
AAGGATTCATAAGGGTGAGT+GGG 0.504573 6_1:+86053890 None:intergenic
AGTGAATGAAGAAATACTCA+TGG 0.511831 6_1:-86047991 Msa0896250:CDS
TTATGTGGATTTATAACTCT+AGG 0.514938 6_1:+86051588 None:intergenic
ATCGATACACTTCGTGTCCT+AGG 0.516359 6_1:+86052625 None:intergenic
CTATCTGAAGGAAATGTTTG+TGG 0.516423 6_1:-86047631 Msa0896250:CDS
TGTGCAGCAAATTAGTACTC+TGG 0.517279 6_1:-86048621 Msa0896250:intron
AATATCAAAAGGGACCAGAT+TGG 0.517560 6_1:-86049561 Msa0896250:CDS
CAGATATATACAAAGAATGA+AGG 0.527692 6_1:+86053871 None:intergenic
AAAGAATGAAGGATTCATAA+GGG 0.528497 6_1:+86053882 None:intergenic
ATATGGTTCCGTAGGAGTCA+TGG 0.532070 6_1:+86052594 None:intergenic
TTCTATTCCCATGACTCCTA+CGG 0.536467 6_1:-86052602 Msa0896250:CDS
TCCTACGGAACCATATGAAA+GGG 0.541266 6_1:-86052587 Msa0896250:CDS
GATTCCAGAATCTTGTACCT+AGG 0.542494 6_1:-86052642 Msa0896250:CDS
TATGGTTCCGTAGGAGTCAT+GGG 0.549254 6_1:+86052595 None:intergenic
CAGCAAATTAGTACTCTGGC+GGG 0.552447 6_1:-86048617 Msa0896250:CDS
TTTAGCTTCAAATAGTTGGA+TGG 0.552467 6_1:-86053789 Msa0896250:intron
ACTTCCCAAATAAAATAGCT+TGG 0.555830 6_1:+86048584 None:intergenic
CTTATGGCTCCTTGAACACC+AGG 0.557457 6_1:+86046887 None:intergenic
ATTCGAGTTCCTCTATCTGA+AGG 0.557951 6_1:-86047643 Msa0896250:CDS
TTGAGCAATGGATGAGCCAT+AGG 0.558229 6_1:-86048240 Msa0896250:CDS
ATTATTTGATTGTGAAGTGT+CGG 0.564647 6_1:+86046596 None:intergenic
CGTGGAAAATTGGAGAGTAT+TGG 0.564772 6_1:-86047676 Msa0896250:CDS
CTCCTACGGAACCATATGAA+AGG 0.573861 6_1:-86052588 Msa0896250:CDS
GTTGGACAAGTAGTACAGTA+AGG 0.575654 6_1:+86052304 None:intergenic
TGGTGGCTTAGTAGAGAAGG+TGG 0.577105 6_1:-86047710 Msa0896250:CDS
GCTGCGAGACATCTCCAGTA+AGG 0.578444 6_1:+86046669 None:intergenic
GTGGTGAAGAACTTCTTACA+TGG 0.584430 6_1:-86047612 Msa0896250:CDS
CAGAATAGGATCATCCATCA+AGG 0.584534 6_1:+86047795 None:intergenic
AGTATTGTGCCTAACAAATG+TGG 0.587670 6_1:-86046978 Msa0896250:CDS
CTACGCGAATCCAGGTTGCA+TGG 0.588259 6_1:-86046647 Msa0896250:CDS
CTGGTGTTCAAGGAGCCATA+AGG 0.589150 6_1:-86046886 Msa0896250:intron
TCCCTTTCATATGGTTCCGT+AGG 0.589831 6_1:+86052586 None:intergenic
GAAGGATTCATAAGGGTGAG+TGG 0.589861 6_1:+86053889 None:intergenic
ACTAATTTCAAGGGACACAC+AGG 0.589893 6_1:-86052562 Msa0896250:CDS
AAAATCCTGAATGTGACTAA+GGG 0.590128 6_1:+86053924 None:intergenic
GAAAGGGATACTAATTTCAA+GGG 0.590743 6_1:-86052571 Msa0896250:CDS
TAAAGGTCCCATGTTGAACA+AGG 0.597167 6_1:-86054083 Msa0896250:five_prime_UTR
ATTTGCCAGAAGATCTTCAG+AGG 0.597220 6_1:-86047965 Msa0896250:CDS
TTATATGTTACTCATACACC+TGG 0.597765 6_1:-86052490 Msa0896250:CDS
AGCACTCAGGAATATCAAAA+GGG 0.598297 6_1:-86049571 Msa0896250:CDS
TTGTGGAAACATGGTAACCA+TGG 0.600383 6_1:+86053825 None:intergenic
TTTATAACTCTAGGTACATG+TGG 0.602488 6_1:+86051597 None:intergenic
AGGATTCATAAGGGTGAGTG+GGG 0.604049 6_1:+86053891 None:intergenic
TACAACTGGGCTGCAACGAG+AGG 0.606077 6_1:-86048014 Msa0896250:CDS
GGTTTGCAGAATAACAATGC+TGG 0.606356 6_1:-86052376 Msa0896250:CDS
GCTTCATTTAATCCAATGAG+TGG 0.607338 6_1:-86052517 Msa0896250:CDS
TGTTCTCTATGGTGATGCCA+AGG 0.613354 6_1:-86051652 Msa0896250:CDS
GAGCATACTTCAGGAAACAA+AGG 0.614367 6_1:-86047583 Msa0896250:intron
TTGTGGTCATGGAAGCACTC+AGG 0.623499 6_1:-86049584 Msa0896250:CDS
GACAACGCGATGTTGAGCAA+TGG 0.624136 6_1:-86048252 Msa0896250:CDS
TCGTTTCGCTTACATACATG+TGG 0.628160 6_1:+86046549 None:intergenic
TGCTCAAAACTCATTGATTG+TGG 0.634186 6_1:-86049601 Msa0896250:CDS
GCAGCAAATTAGTACTCTGG+CGG 0.635016 6_1:-86048618 Msa0896250:intron
CAAAATACAAACATGTGACA+CGG 0.635715 6_1:+86046408 None:intergenic
TGATGGTGGCTTAGTAGAGA+AGG 0.636021 6_1:-86047713 Msa0896250:CDS
ACCATGGAAGAAAAGTAAGA+GGG 0.645466 6_1:+86053841 None:intergenic
AAGAGACTTTGAAGAAGCAG+TGG 0.649142 6_1:+86053961 None:intergenic
GCTTAGCAGATGATCTGAGA+AGG 0.650187 6_1:-86048216 Msa0896250:intron
TTTGCCAGAAGATCTTCAGA+GGG 0.654562 6_1:-86047964 Msa0896250:CDS
TGTGACTAAGGGTTAAGTAA+TGG 0.657127 6_1:+86053935 None:intergenic
TCTGGAATCTAGAACCGTCA+GGG 0.657585 6_1:+86052656 None:intergenic
TTATGTGGCATGAATGAACA+TGG 0.660239 6_1:-86052397 Msa0896250:CDS
ACAAGCTGAACGTTACAACT+GGG 0.661635 6_1:-86048027 Msa0896250:CDS
GCAGATTTGTGAACACAACA+TGG 0.667059 6_1:-86052740 Msa0896250:exon
AAACAGTCAAATGACCCTGA+CGG 0.675231 6_1:-86052670 Msa0896250:CDS
ATTGTGCCTAACAAATGTGG+AGG 0.678382 6_1:-86046975 Msa0896250:CDS
CGTGCCAATGAGCAAACCAG+TGG 0.709750 6_1:-86052443 Msa0896250:CDS
GGCTGAGTTTGATAGTGACA+AGG 0.717212 6_1:-86052719 Msa0896250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAAAATCAAAATTATA+AGG + chr6_1:86049239-86049258 None:intergenic 10.0%
!! TATTGTAAAAATCATATTAA+AGG + chr6_1:86051003-86051022 None:intergenic 10.0%
!!! ACATAAATGTTATTTAAAAA+AGG + chr6_1:86052211-86052230 None:intergenic 10.0%
!!! TTTTTAAATAACATTTATGT+AGG - chr6_1:86052211-86052230 Msa0896250:intron 10.0%
!! AAATATGAAAAGAAAAAGTA+TGG + chr6_1:86047221-86047240 None:intergenic 15.0%
!!! TAACATAACTAATGATTTTA+AGG + chr6_1:86047527-86047546 None:intergenic 15.0%
!!! AAGAATAGTATATTTTAAGA+TGG + chr6_1:86048172-86048191 None:intergenic 15.0%
!! AATATTTGAATCTAAATAGA+GGG + chr6_1:86048937-86048956 None:intergenic 15.0%
!! AAATTAGTCATGTAATTAAA+AGG + chr6_1:86049125-86049144 None:intergenic 15.0%
!!! TTTTGAAAGAGAAAAAAAAA+CGG + chr6_1:86050250-86050269 None:intergenic 15.0%
!!! ATATGTATATTCATCATTTT+GGG - chr6_1:86050964-86050983 Msa0896250:intron 15.0%
!!! TCTTTATGTTCTTTTTTTTA+AGG - chr6_1:86051029-86051048 Msa0896250:intron 15.0%
!! TATGTTGAATTATATTTGAA+GGG + chr6_1:86051173-86051192 None:intergenic 15.0%
!! AAACATGTTATTACTTATTA+AGG + chr6_1:86052073-86052092 None:intergenic 15.0%
!!! CTTATATTTCATTTTCTTAA+AGG - chr6_1:86052095-86052114 Msa0896250:intron 15.0%
!!! GATAAGATTTTATAATCTTA+AGG - chr6_1:86052525-86052544 Msa0896250:CDS 15.0%
!!! TTTTTATGTGTATTTTCAAA+TGG - chr6_1:86053907-86053926 Msa0896250:five_prime_UTR 15.0%
!!! TTTTATGTGTATTTTCAAAT+GGG - chr6_1:86053908-86053927 Msa0896250:five_prime_UTR 15.0%
!! GTTTATGTTAATGTTAATAT+TGG + chr6_1:86054087-86054106 None:intergenic 15.0%
!!! ATACAATATGTTGTTTTTCA+AGG - chr6_1:86046379-86046398 Msa0896250:three_prime_UTR 20.0%
!! AATATGTTGAAAACAGTTTA+TGG + chr6_1:86046851-86046870 None:intergenic 20.0%
!!! AGTTTCTAATTATTTTTGGA+GGG + chr6_1:86047368-86047387 None:intergenic 20.0%
!!! GTTGAGTTTCTAATTATTTT+TGG + chr6_1:86047372-86047391 None:intergenic 20.0%
!! GTAAAAATGAACATTTACTA+AGG - chr6_1:86048035-86048054 Msa0896250:CDS 20.0%
!!! ATACTATTCTTTCTTTCTTT+TGG - chr6_1:86048181-86048200 Msa0896250:intron 20.0%
!! AAAATAAACCCTAAATACAT+AGG + chr6_1:86048266-86048285 None:intergenic 20.0%
!! ATATTGTCTAGTATCAAATT+TGG - chr6_1:86048305-86048324 Msa0896250:intron 20.0%
!! GATATAGATCAATGTATATT+TGG - chr6_1:86048338-86048357 Msa0896250:intron 20.0%
!! ATAATAAACTTGTACATCAA+TGG - chr6_1:86048820-86048839 Msa0896250:intron 20.0%
!! ATATTTGAATCTAAATAGAG+GGG + chr6_1:86048936-86048955 None:intergenic 20.0%
!! CAATATTTGAATCTAAATAG+AGG + chr6_1:86048938-86048957 None:intergenic 20.0%
!! AGTTAAGAACAATACATTTA+TGG + chr6_1:86049012-86049031 None:intergenic 20.0%
!!! ATGGATGTATTTTATGTTTA+AGG + chr6_1:86049271-86049290 None:intergenic 20.0%
!! GGATAAACAATTTAATTAAG+CGG - chr6_1:86049774-86049793 Msa0896250:intron 20.0%
!!! TTATTGTAGAAAGTATACTT+GGG + chr6_1:86050038-86050057 None:intergenic 20.0%
!!! TTTATTGTAGAAAGTATACT+TGG + chr6_1:86050039-86050058 None:intergenic 20.0%
!! CAATAAAAAGTAATGTAGAT+TGG - chr6_1:86050052-86050071 Msa0896250:intron 20.0%
!! GGGAAAATTATTATGAATAA+CGG + chr6_1:86050223-86050242 None:intergenic 20.0%
!! TTTGAAAGAGAAAAAAAAAC+GGG + chr6_1:86050249-86050268 None:intergenic 20.0%
!! TATCACTGTTATATTACTTT+CGG - chr6_1:86050678-86050697 Msa0896250:intron 20.0%
!!! GATATGTATATTCATCATTT+TGG - chr6_1:86050963-86050982 Msa0896250:intron 20.0%
!!! TATGTATATTCATCATTTTG+GGG - chr6_1:86050965-86050984 Msa0896250:intron 20.0%
!! TAAATAAGAAAGATCAATAC+TGG - chr6_1:86051126-86051145 Msa0896250:intron 20.0%
!! GTATGTTGAATTATATTTGA+AGG + chr6_1:86051174-86051193 None:intergenic 20.0%
!! AATATAATTCAACATACTTC+AGG - chr6_1:86051177-86051196 Msa0896250:intron 20.0%
!! TAAGATATTCAATTTAGCTA+TGG - chr6_1:86051675-86051694 Msa0896250:intron 20.0%
!! AAAATACTGACATATAAAAG+TGG + chr6_1:86052047-86052066 None:intergenic 20.0%
!!! ATATTTCATTTTCTTAAAGG+AGG - chr6_1:86052098-86052117 Msa0896250:intron 20.0%
!!! AATTGCCATTTATATATTGT+AGG - chr6_1:86052559-86052578 Msa0896250:CDS 20.0%
!! AGACAAAAAATTTACATCAA+AGG - chr6_1:86052638-86052657 Msa0896250:CDS 20.0%
!!! TTAGAAAAGAAACATTTTTG+TGG + chr6_1:86053158-86053177 None:intergenic 20.0%
!!! ACATTTTGTTATGATAATCA+AGG - chr6_1:86053609-86053628 Msa0896250:intron 20.0%
!! GAAGATAAAAAGTAAGAAAT+AGG - chr6_1:86053942-86053961 Msa0896250:five_prime_UTR 20.0%
! AAAGAATGAAGGATTCATAA+GGG + chr6_1:86046510-86046529 None:intergenic 25.0%
! CAGATATATACAAAGAATGA+AGG + chr6_1:86046521-86046540 None:intergenic 25.0%
! TATAAACATGTGACACTATT+TGG - chr6_1:86046807-86046826 Msa0896250:intron 25.0%
!! TCTTAACTGAATCAATTTTC+AGG + chr6_1:86047121-86047140 None:intergenic 25.0%
!! TCTTGCAGATTTTATTCAAT+TGG - chr6_1:86047141-86047160 Msa0896250:intron 25.0%
!! ATTTTATTCAATTGGTGGAA+AGG - chr6_1:86047149-86047168 Msa0896250:intron 25.0%
!!! GAGTTTCTAATTATTTTTGG+AGG + chr6_1:86047369-86047388 None:intergenic 25.0%
! AGATAAGTATAACATAGTAG+TGG + chr6_1:86047439-86047458 None:intergenic 25.0%
!! ATACTTATCTCTTTGTTTAG+TGG - chr6_1:86047449-86047468 Msa0896250:intron 25.0%
!!! TTTTTTGCGACAACTATTTA+AGG - chr6_1:86047569-86047588 Msa0896250:intron 25.0%
!! TTTTTGCGACAACTATTTAA+GGG - chr6_1:86047570-86047589 Msa0896250:intron 25.0%
! AAATTAGTATCCCTTTCATA+TGG + chr6_1:86047815-86047834 None:intergenic 25.0%
! ACTGAAAAATTTCCTTTATG+TGG - chr6_1:86047977-86047996 Msa0896250:CDS 25.0%
!!! ATATTTTAAGATGGTACCTT+AGG + chr6_1:86048163-86048182 None:intergenic 25.0%
!! TTCTTTCTTTCTTTTGGTAT+AGG - chr6_1:86048187-86048206 Msa0896250:intron 25.0%
! AATGTATATTTGGACGAAAT+AGG - chr6_1:86048348-86048367 Msa0896250:intron 25.0%
!!! AAGCCGAACATTTTAAAAAT+TGG - chr6_1:86048490-86048509 Msa0896250:intron 25.0%
!!! AGCCGAACATTTTAAAAATT+GGG - chr6_1:86048491-86048510 Msa0896250:CDS 25.0%
!! TATTTCTAAATCAGCGATTA+CGG + chr6_1:86048520-86048539 None:intergenic 25.0%
!!! TTTTGTGTCATTCATGATTT+TGG + chr6_1:86048549-86048568 None:intergenic 25.0%
!! TAATGTGTTAAATGCAGTTT+TGG + chr6_1:86048580-86048599 None:intergenic 25.0%
! TGTTCTCATTATCATTATCT+AGG - chr6_1:86048663-86048682 Msa0896250:intron 25.0%
! TTATGTGGATTTATAACTCT+AGG + chr6_1:86048804-86048823 None:intergenic 25.0%
! TGATGTACAAGTTTATTATG+TGG + chr6_1:86048819-86048838 None:intergenic 25.0%
!!! ATTTTTTGCAATTTGTTGCT+TGG - chr6_1:86048848-86048867 Msa0896250:intron 25.0%
! GATAGCAAGAAGAAAAATAA+TGG + chr6_1:86048891-86048910 None:intergenic 25.0%
! TATTTGAATCTAAATAGAGG+GGG + chr6_1:86048935-86048954 None:intergenic 25.0%
! TTTCCTAAATATTATCCTTC+AGG - chr6_1:86049084-86049103 Msa0896250:intron 25.0%
! AATAATCAAAATCTACCTGA+AGG + chr6_1:86049102-86049121 None:intergenic 25.0%
!!! TGATCTGATCATTTTTCTTA+TGG + chr6_1:86049290-86049309 None:intergenic 25.0%
!!! TAGTGAAGAGCTATTTTTTT+AGG + chr6_1:86049647-86049666 None:intergenic 25.0%
! AATAAGCTGAAAACAGTTTA+TGG - chr6_1:86049910-86049929 Msa0896250:intron 25.0%
! TTGAAAGAGAAAAAAAAACG+GGG + chr6_1:86050248-86050267 None:intergenic 25.0%
! TAAACTCAAATGATAATTGC+TGG + chr6_1:86050601-86050620 None:intergenic 25.0%
!! GAACATTAGATTTTGTAGTA+AGG + chr6_1:86050937-86050956 None:intergenic 25.0%
! TTTCCTAGTAATGAAAATTG+AGG - chr6_1:86051072-86051091 Msa0896250:intron 25.0%
!! GGAATACCATTTTCTAATTA+TGG - chr6_1:86051298-86051317 Msa0896250:intron 25.0%
! AACTTATATTTACACTGTTC+TGG + chr6_1:86051550-86051569 None:intergenic 25.0%
! ATGATTTCACTTAAGGTTTA+TGG + chr6_1:86051589-86051608 None:intergenic 25.0%
!! TAGAATAATTTTCGAATTCC+AGG + chr6_1:86051618-86051637 None:intergenic 25.0%
!! CACATTATTGAAGTTTTCTT+CGG - chr6_1:86051650-86051669 Msa0896250:CDS 25.0%
! AAACATACAAAACTTTCTTC+AGG - chr6_1:86051885-86051904 Msa0896250:intron 25.0%
!!! TCTCTTTAGATTTGTTAAGA+AGG - chr6_1:86052461-86052480 Msa0896250:CDS 25.0%
! TCGAACCTACAATATATAAA+TGG + chr6_1:86052567-86052586 None:intergenic 25.0%
! CTTCTTAGGATCTATATATT+TGG + chr6_1:86053055-86053074 None:intergenic 25.0%
!!! GCTATTTTAATTAGCTTCTT+AGG + chr6_1:86053069-86053088 None:intergenic 25.0%
! GTGATTATTGTTTAGAAATG+TGG - chr6_1:86053227-86053246 Msa0896250:intron 25.0%
! CTATGTAGAATCACAATTTA+GGG + chr6_1:86053256-86053275 None:intergenic 25.0%
!! AAAAGTTGTTATCTTTTGCA+AGG + chr6_1:86053323-86053342 None:intergenic 25.0%
! AATCACAATTTCATAAGCAT+AGG + chr6_1:86053541-86053560 None:intergenic 25.0%
! TAAAATGCATAACTCATCTT+AGG - chr6_1:86053688-86053707 Msa0896250:intron 25.0%
! ATTATTTGATTGTGAAGTGT+CGG + chr6_1:86053796-86053815 None:intergenic 25.0%
AAAATCCTGAATGTGACTAA+GGG + chr6_1:86046468-86046487 None:intergenic 30.0%
AAAAATCCTGAATGTGACTA+AGG + chr6_1:86046469-86046488 None:intergenic 30.0%
CAAAGAATGAAGGATTCATA+AGG + chr6_1:86046511-86046530 None:intergenic 30.0%
TAAAGCATGGATTCTTATTG+TGG + chr6_1:86046584-86046603 None:intergenic 30.0%
! AACTATTTGAAGCTAAAGCA+TGG + chr6_1:86046597-86046616 None:intergenic 30.0%
! ATGCTTTAGCTTCAAATAGT+TGG - chr6_1:86046596-86046615 Msa0896250:CDS 30.0%
! TTTAGCTTCAAATAGTTGGA+TGG - chr6_1:86046600-86046619 Msa0896250:CDS 30.0%
ACTCAAAATCTCCTAATAAC+TGG + chr6_1:86046650-86046669 None:intergenic 30.0%
TGGCAATATACTATCAAAGT+TGG + chr6_1:86046675-86046694 None:intergenic 30.0%
GTTGTTTATTTGTGTTAACC+TGG - chr6_1:86046736-86046755 Msa0896250:intron 30.0%
ACTAACAAAAGCAAGCAAAA+GGG + chr6_1:86047023-86047042 None:intergenic 30.0%
! TGCAGATTTTATTCAATTGG+TGG - chr6_1:86047144-86047163 Msa0896250:intron 30.0%
!! CTTTAGTCTTTTATGAAGTG+TGG - chr6_1:86047292-86047311 Msa0896250:intron 30.0%
! TTTTGCGACAACTATTTAAG+GGG - chr6_1:86047571-86047590 Msa0896250:intron 30.0%
TGAAAGGGATACTAATTTCA+AGG - chr6_1:86047817-86047836 Msa0896250:intron 30.0%
GAAAGGGATACTAATTTCAA+GGG - chr6_1:86047818-86047837 Msa0896250:intron 30.0%
GGTGTATGAGTAACATATAA+TGG + chr6_1:86047899-86047918 None:intergenic 30.0%
TTATATGTTACTCATACACC+TGG - chr6_1:86047899-86047918 Msa0896250:intron 30.0%
! TTTTCAGTATTACTTTCCAC+TGG + chr6_1:86047965-86047984 None:intergenic 30.0%
AATGAACATTTACTAAGGTC+TGG - chr6_1:86048040-86048059 Msa0896250:intron 30.0%
ACAAAGCGATTTGAAAAGTT+CGG - chr6_1:86048126-86048145 Msa0896250:intron 30.0%
ATAAACCCTAAATACATAGG+CGG + chr6_1:86048263-86048282 None:intergenic 30.0%
TTGGACGAAATAGGAATTAA+TGG - chr6_1:86048357-86048376 Msa0896250:intron 30.0%
TTCAGCCTCAAAATTCTTAA+AGG - chr6_1:86048462-86048481 Msa0896250:intron 30.0%
TCAGCCTCAAAATTCTTAAA+GGG - chr6_1:86048463-86048482 Msa0896250:intron 30.0%
!! TTTCCCCTTTAAGAATTTTG+AGG + chr6_1:86048470-86048489 None:intergenic 30.0%
!! GCCGAACATTTTAAAAATTG+GGG - chr6_1:86048492-86048511 Msa0896250:CDS 30.0%
!!! CCCCCAATTTTTAAAATGTT+CGG + chr6_1:86048496-86048515 None:intergenic 30.0%
!! CCGAACATTTTAAAAATTGG+GGG - chr6_1:86048493-86048512 Msa0896250:CDS 30.0%
!! GTAATCGCTGATTTAGAAAT+AGG - chr6_1:86048519-86048538 Msa0896250:CDS 30.0%
TCATGAATGACACAAAATGA+AGG - chr6_1:86048552-86048571 Msa0896250:CDS 30.0%
CATGAATGACACAAAATGAA+GGG - chr6_1:86048553-86048572 Msa0896250:CDS 30.0%
TTTATAACTCTAGGTACATG+TGG + chr6_1:86048795-86048814 None:intergenic 30.0%
!! ATTTTTCTTCTTGCTATCTG+TGG - chr6_1:86048893-86048912 Msa0896250:intron 30.0%
ATTTGAATCTAAATAGAGGG+GGG + chr6_1:86048934-86048953 None:intergenic 30.0%
TATTGCATATTGTTCTATGC+AGG - chr6_1:86048985-86049004 Msa0896250:intron 30.0%
CTACCTGAAGGATAATATTT+AGG + chr6_1:86049090-86049109 None:intergenic 30.0%
!! ATCATTTTTGTGTAGAAGAG+AGG - chr6_1:86049483-86049502 Msa0896250:CDS 30.0%
GAGGAATGATAAGTATATCT+TGG - chr6_1:86049502-86049521 Msa0896250:CDS 30.0%
TAAACTGCAAAGAATGAACT+TGG + chr6_1:86049565-86049584 None:intergenic 30.0%
AAGTTCATTCTTTGCAGTTT+AGG - chr6_1:86049564-86049583 Msa0896250:CDS 30.0%
!!! GAAGAGCTATTTTTTTAGGA+TGG + chr6_1:86049643-86049662 None:intergenic 30.0%
GATACACAATAAGCAACAAA+GGG + chr6_1:86049738-86049757 None:intergenic 30.0%
TGCTTATTGTGTATCGTATA+AGG - chr6_1:86049743-86049762 Msa0896250:intron 30.0%
TTCAAATTAGACTGTCTGTT+TGG + chr6_1:86050005-86050024 None:intergenic 30.0%
! AGTTTGACTTTGTAACTTCA+AGG - chr6_1:86050148-86050167 Msa0896250:intron 30.0%
! GTTTGACTTTGTAACTTCAA+GGG - chr6_1:86050149-86050168 Msa0896250:intron 30.0%
ATACTACAATCTCCTTATCA+TGG - chr6_1:86050279-86050298 Msa0896250:intron 30.0%
CATTGCATTAAACCATGATA+AGG + chr6_1:86050294-86050313 None:intergenic 30.0%
TTTGTCATTCCAAAACACTT+GGG - chr6_1:86050338-86050357 Msa0896250:intron 30.0%
CAGTTGGATAAATTAGCATT+GGG + chr6_1:86050445-86050464 None:intergenic 30.0%
! TTGCCTCAATTTTCATTACT+AGG + chr6_1:86051078-86051097 None:intergenic 30.0%
! ATGAAATGAAATCTAGCCTT+TGG + chr6_1:86051205-86051224 None:intergenic 30.0%
! GCTCTAAATGATTTCACTTA+AGG + chr6_1:86051596-86051615 None:intergenic 30.0%
AATTCTACTAATGCTATGAC+TGG - chr6_1:86051738-86051757 Msa0896250:intron 30.0%
ATTCTACTAATGCTATGACT+GGG - chr6_1:86051739-86051758 Msa0896250:intron 30.0%
!! TGACACCAAGCTATTTTATT+TGG - chr6_1:86051800-86051819 Msa0896250:intron 30.0%
!! GACACCAAGCTATTTTATTT+GGG - chr6_1:86051801-86051820 Msa0896250:intron 30.0%
ACTTCCCAAATAAAATAGCT+TGG + chr6_1:86051808-86051827 None:intergenic 30.0%
TTCTGTCGGATTATAATGTT+TGG - chr6_1:86052318-86052337 Msa0896250:CDS 30.0%
AGTGAATGAAGAAATACTCA+TGG - chr6_1:86052398-86052417 Msa0896250:CDS 30.0%
! GGAAGCAAAATTTTGTATGA+TGG - chr6_1:86052659-86052678 Msa0896250:CDS 30.0%
! AGCAAAATTTTGTATGATGG+TGG - chr6_1:86052662-86052681 Msa0896250:CDS 30.0%
!! AAGCATTGATGACACTATTA+GGG + chr6_1:86053003-86053022 None:intergenic 30.0%
!! TAAGCATTGATGACACTATT+AGG + chr6_1:86053004-86053023 None:intergenic 30.0%
TAGGATCTATATATTTGGAC+TGG + chr6_1:86053050-86053069 None:intergenic 30.0%
GCTATGTAGAATCACAATTT+AGG + chr6_1:86053257-86053276 None:intergenic 30.0%
AAGAATTCCAAGACAAAGAT+TGG - chr6_1:86053375-86053394 Msa0896250:intron 30.0%
CAAAATACAAACATGTGACA+CGG + chr6_1:86053984-86054003 None:intergenic 30.0%
TCTAACAAGTACAACATTTC+TGG - chr6_1:86054056-86054075 Msa0896250:five_prime_UTR 30.0%
TGTGACTAAGGGTTAAGTAA+TGG + chr6_1:86046457-86046476 None:intergenic 35.0%
ACCATGGAAGAAAAGTAAGA+GGG + chr6_1:86046551-86046570 None:intergenic 35.0%
AACCATGGAAGAAAAGTAAG+AGG + chr6_1:86046552-86046571 None:intergenic 35.0%
GGATTCTTATTGTGGAAACA+TGG + chr6_1:86046576-86046595 None:intergenic 35.0%
GTCATCAGTTACCAGTTATT+AGG - chr6_1:86046636-86046655 Msa0896250:CDS 35.0%
TAAGAGAGTAAAGACCTGTT+TGG + chr6_1:86046708-86046727 None:intergenic 35.0%
GACTAACAAAAGCAAGCAAA+AGG + chr6_1:86047024-86047043 None:intergenic 35.0%
TTCAATTGGTGGAAAGGATA+AGG - chr6_1:86047155-86047174 Msa0896250:intron 35.0%
! TCATATTTTCAGTCCTCATG+TGG - chr6_1:86047233-86047252 Msa0896250:intron 35.0%
TACTTTCCAAATACCACATG+AGG + chr6_1:86047249-86047268 None:intergenic 35.0%
GGAAAAGAGATAACACATAG+TGG - chr6_1:86047333-86047352 Msa0896250:intron 35.0%
! AGATAACACATAGTGGAGAA+AGG - chr6_1:86047340-86047359 Msa0896250:intron 35.0%
! GATAACACATAGTGGAGAAA+GGG - chr6_1:86047341-86047360 Msa0896250:intron 35.0%
GGCTCAAAGTGATAAAAAAG+AGG + chr6_1:86047418-86047437 None:intergenic 35.0%
GCTTCATTTAATCCAATGAG+TGG - chr6_1:86047872-86047891 Msa0896250:intron 35.0%
!! ACATATAATGGACCACTCAT+TGG + chr6_1:86047887-86047906 None:intergenic 35.0%
! CATACACCTGGAAATCTTTT+CGG - chr6_1:86047911-86047930 Msa0896250:intron 35.0%
! ATACACCTGGAAATCTTTTC+GGG - chr6_1:86047912-86047931 Msa0896250:intron 35.0%
!! AAATCTTTTCGGGCAGAATA+TGG - chr6_1:86047922-86047941 Msa0896250:intron 35.0%
TGTTCATTCATGCCACATAA+AGG + chr6_1:86047992-86048011 None:intergenic 35.0%
TTATGTGGCATGAATGAACA+TGG - chr6_1:86047992-86048011 Msa0896250:CDS 35.0%
TACTTGTCCAACTTACTTCA+AGG - chr6_1:86048096-86048115 Msa0896250:intron 35.0%
CAAAGCGATTTGAAAAGTTC+GGG - chr6_1:86048127-86048146 Msa0896250:intron 35.0%
CAAGCATGAAGCAAGATTTA+AGG + chr6_1:86048231-86048250 None:intergenic 35.0%
TAAACCCTAAATACATAGGC+GGG + chr6_1:86048262-86048281 None:intergenic 35.0%
CAGCCTCAAAATTCTTAAAG+GGG - chr6_1:86048464-86048483 Msa0896250:intron 35.0%
CAGTTTCAGAATGTTCTCTA+TGG - chr6_1:86048726-86048745 Msa0896250:intron 35.0%
!!! TTTTGCAATTTGTTGCTTGG+TGG - chr6_1:86048851-86048870 Msa0896250:intron 35.0%
! GGTTCTTCTAAGAGAACATT+TGG + chr6_1:86049218-86049237 None:intergenic 35.0%
TCATTCTTTGCAGTTTAGGT+TGG - chr6_1:86049568-86049587 Msa0896250:CDS 35.0%
CGATACACAATAAGCAACAA+AGG + chr6_1:86049739-86049758 None:intergenic 35.0%
GTATCGTATAAGGCTCTATT+TGG - chr6_1:86049753-86049772 Msa0896250:intron 35.0%
AATTAAGCGGTTATCGTATG+AGG - chr6_1:86049787-86049806 Msa0896250:intron 35.0%
ATTAAGCGGTTATCGTATGA+GGG - chr6_1:86049788-86049807 Msa0896250:intron 35.0%
ATCACTAAGCTGACATTTCT+TGG + chr6_1:86050125-86050144 None:intergenic 35.0%
ATGAATAACGGTGACACTAA+TGG + chr6_1:86050211-86050230 None:intergenic 35.0%
AGAGAAAAAAAAACGGGGAA+GGG + chr6_1:86050243-86050262 None:intergenic 35.0%
AAGAGAAAAAAAAACGGGGA+AGG + chr6_1:86050244-86050263 None:intergenic 35.0%
GTTTGTCATTCCAAAACACT+TGG - chr6_1:86050337-86050356 Msa0896250:intron 35.0%
CCAGTTGGATAAATTAGCAT+TGG + chr6_1:86050446-86050465 None:intergenic 35.0%
CCAATGCTAATTTATCCAAC+TGG - chr6_1:86050443-86050462 Msa0896250:intron 35.0%
! CTTTTTACCTTTATGCTGTC+TGG - chr6_1:86050506-86050525 Msa0896250:intron 35.0%
!! TTTGGTTTGCAGGTAATGTT+AGG - chr6_1:86050557-86050576 Msa0896250:intron 35.0%
CATCTGTAAAATTTCGCTGT+CGG + chr6_1:86050635-86050654 None:intergenic 35.0%
! TAGACATTGATTAACCCTCT+GGG + chr6_1:86050735-86050754 None:intergenic 35.0%
! TGCTCAAAACTCATTGATTG+TGG - chr6_1:86050788-86050807 Msa0896250:intron 35.0%
! AAACTCATTGATTGTGGTCA+TGG - chr6_1:86050794-86050813 Msa0896250:intron 35.0%
AAGCACTCAGGAATATCAAA+AGG - chr6_1:86050817-86050836 Msa0896250:intron 35.0%
AGCACTCAGGAATATCAAAA+GGG - chr6_1:86050818-86050837 Msa0896250:intron 35.0%
AATATCAAAAGGGACCAGAT+TGG - chr6_1:86050828-86050847 Msa0896250:intron 35.0%
ATATCAAAAGGGACCAGATT+GGG - chr6_1:86050829-86050848 Msa0896250:intron 35.0%
!!! ACAGAAGATGGTTTTGAGTA+TGG - chr6_1:86050890-86050909 Msa0896250:intron 35.0%
!! TTCATCATTTTGGGGATTTC+AGG - chr6_1:86050973-86050992 Msa0896250:intron 35.0%
! TGAAGGGAGCATAAATGATT+GGG + chr6_1:86051157-86051176 None:intergenic 35.0%
! TTGAAGGGAGCATAAATGAT+TGG + chr6_1:86051158-86051177 None:intergenic 35.0%
GGCGTTCCATAATTAGAAAA+TGG + chr6_1:86051307-86051326 None:intergenic 35.0%
TATAACATGGACGACTATGA+CGG - chr6_1:86051371-86051390 Msa0896250:CDS 35.0%
! TGTAGGTTTGACTACTCTTT+TGG - chr6_1:86051519-86051538 Msa0896250:CDS 35.0%
! AAGTGAAATCATTTAGAGCC+TGG - chr6_1:86051597-86051616 Msa0896250:CDS 35.0%
CAATGATTCCCATCGTAAAA+AGG + chr6_1:86051831-86051850 None:intergenic 35.0%
! CTTTTTACGATGGGAATCAT+TGG - chr6_1:86051829-86051848 Msa0896250:intron 35.0%
TAAGTCTTCGAGATTTCTGT+CGG - chr6_1:86052304-86052323 Msa0896250:CDS 35.0%
!! TAATGTTTGGTTTGTGATGC+AGG - chr6_1:86052331-86052350 Msa0896250:CDS 35.0%
TATTAGTATTTCCGACGATG+AGG - chr6_1:86052490-86052509 Msa0896250:CDS 35.0%
! GGTTCGAATATTTTCCTTGA+TGG - chr6_1:86052580-86052599 Msa0896250:CDS 35.0%
CAAACATTTCCTTCAGATAG+AGG + chr6_1:86052758-86052777 None:intergenic 35.0%
CTATCTGAAGGAAATGTTTG+TGG - chr6_1:86052758-86052777 Msa0896250:intron 35.0%
! GTTTAGCTCATATGTCAAAC+AGG + chr6_1:86052911-86052930 None:intergenic 35.0%
TAAGCTCTCCTGACATATTA+TGG - chr6_1:86052947-86052966 Msa0896250:intron 35.0%
AAGCTCTCCTGACATATTAT+GGG - chr6_1:86052948-86052967 Msa0896250:intron 35.0%
AACTTGTCCCATAATATGTC+AGG + chr6_1:86052958-86052977 None:intergenic 35.0%
GGTTATTTGAGCTTATCTAC+TGG + chr6_1:86053029-86053048 None:intergenic 35.0%
ACATAGCTGCTACTATAACA+AGG - chr6_1:86053270-86053289 Msa0896250:intron 35.0%
!!! TGTTTTAGCACAAACTGCAA+GGG + chr6_1:86053356-86053375 None:intergenic 35.0%
!!! TTGTTTTAGCACAAACTGCA+AGG + chr6_1:86053357-86053376 None:intergenic 35.0%
TTGCTAACCAATCTTTGTCT+TGG + chr6_1:86053385-86053404 None:intergenic 35.0%
AGTATTGTGCCTAACAAATG+TGG - chr6_1:86053411-86053430 Msa0896250:intron 35.0%
AAAATGCCTCCACATTTGTT+AGG + chr6_1:86053423-86053442 None:intergenic 35.0%
AAAGGCTTGTAACTTCTTCA+AGG + chr6_1:86053462-86053481 None:intergenic 35.0%
TCCTCAAGAATCTTGCAAAA+AGG + chr6_1:86053480-86053499 None:intergenic 35.0%
AGGACAAAGAGAATACCTTA+TGG + chr6_1:86053521-86053540 None:intergenic 35.0%
TTAGGTATGAATCACCTTAC+TGG - chr6_1:86053706-86053725 Msa0896250:five_prime_UTR 35.0%
TAAAGGTCCCATGTTGAACA+AGG - chr6_1:86046306-86046325 Msa0896250:three_prime_UTR 40.0%
! TGCTTTGCCTTGTTCAACAT+GGG + chr6_1:86046316-86046335 None:intergenic 40.0%
! TTGCTTTGCCTTGTTCAACA+TGG + chr6_1:86046317-86046336 None:intergenic 40.0%
! AAGAGACTTTGAAGAAGCAG+TGG + chr6_1:86046431-86046450 None:intergenic 40.0%
CTTAACCCTTAGTCACATTC+AGG - chr6_1:86046460-86046479 Msa0896250:three_prime_UTR 40.0%
AAGGATTCATAAGGGTGAGT+GGG + chr6_1:86046502-86046521 None:intergenic 40.0%
!! ACCCTCTTACTTTTCTTCCA+TGG - chr6_1:86046547-86046566 Msa0896250:three_prime_UTR 40.0%
TTGTGGAAACATGGTAACCA+TGG + chr6_1:86046567-86046586 None:intergenic 40.0%
AACAGACGCTAAATTAAGCC+AGG + chr6_1:86046757-86046776 None:intergenic 40.0%
TGGAAAGGATAAGGTTGTTG+TGG - chr6_1:86047164-86047183 Msa0896250:intron 40.0%
TTCAGTCCTCATGTGGTATT+TGG - chr6_1:86047240-86047259 Msa0896250:intron 40.0%
TGGAACTTTGTGTAGAGTTC+AGG - chr6_1:86047312-86047331 Msa0896250:intron 40.0%
GCAGATTTGTGAACACAACA+TGG - chr6_1:86047649-86047668 Msa0896250:CDS 40.0%
! GGATTAGCATCTGACAGAAT+CGG + chr6_1:86047698-86047717 None:intergenic 40.0%
! TCAGGGTCATTTGACTGTTT+TGG + chr6_1:86047719-86047738 None:intergenic 40.0%
AAACAGTCAAATGACCCTGA+CGG - chr6_1:86047719-86047738 Msa0896250:CDS 40.0%
GATTCCAGAATCTTGTACCT+AGG - chr6_1:86047747-86047766 Msa0896250:CDS 40.0%
TTCTATTCCCATGACTCCTA+CGG - chr6_1:86047787-86047806 Msa0896250:CDS 40.0%
TCCTACGGAACCATATGAAA+GGG - chr6_1:86047802-86047821 Msa0896250:CDS 40.0%
ACTAATTTCAAGGGACACAC+AGG - chr6_1:86047827-86047846 Msa0896250:intron 40.0%
!! GCTTTTCTTTGACTCGTTAG+AGG + chr6_1:86047854-86047873 None:intergenic 40.0%
GGTTTGCAGAATAACAATGC+TGG - chr6_1:86048013-86048032 Msa0896250:CDS 40.0%
TTTACTAAGGTCTGGTCAGT+TGG - chr6_1:86048048-86048067 Msa0896250:intron 40.0%
TTACTAAGGTCTGGTCAGTT+GGG - chr6_1:86048049-86048068 Msa0896250:intron 40.0%
GTTGGACAAGTAGTACAGTA+AGG + chr6_1:86048088-86048107 None:intergenic 40.0%
! TGAGTAGCCTTGAAGTAAGT+TGG + chr6_1:86048106-86048125 None:intergenic 40.0%
! TTTTCCCCGCCTATGTATTT+AGG - chr6_1:86048254-86048273 Msa0896250:CDS 40.0%
TTTCCCCGCCTATGTATTTA+GGG - chr6_1:86048255-86048274 Msa0896250:CDS 40.0%
AAACCCTAAATACATAGGCG+GGG + chr6_1:86048261-86048280 None:intergenic 40.0%
GATCCTGTGATACTTTGTCT+AGG + chr6_1:86048398-86048417 None:intergenic 40.0%
!! TTGCTTGGTGGCAATTTTTG+TGG - chr6_1:86048863-86048882 Msa0896250:intron 40.0%
! CTTCTTGCTATCTGTGGATA+AGG - chr6_1:86048899-86048918 Msa0896250:intron 40.0%
TGCTATCTGTGGATAAGGTA+TGG - chr6_1:86048904-86048923 Msa0896250:intron 40.0%
TGCAGCAGTGTTAACATTAG+CGG + chr6_1:86049419-86049438 None:intergenic 40.0%
TACTCTTCTGTGACGTAGTA+GGG - chr6_1:86049525-86049544 Msa0896250:CDS 40.0%
TCACAAGTACTTATGTCCGT+AGG - chr6_1:86049960-86049979 Msa0896250:intron 40.0%
AGCTCATTTGAGCTTACCTA+CGG + chr6_1:86049979-86049998 None:intergenic 40.0%
CTTTGTAACTTCAAGGGACA+TGG - chr6_1:86050155-86050174 Msa0896250:intron 40.0%
ATCTTGGAATGTACTGAGCA+AGG + chr6_1:86050409-86050428 None:intergenic 40.0%
GGGAGAAATCTACACAATCT+TGG + chr6_1:86050425-86050444 None:intergenic 40.0%
AACTGGATTCATCTTCGAGT+CGG - chr6_1:86050460-86050479 Msa0896250:intron 40.0%
ACATTACCTGCAAACCAAAG+AGG + chr6_1:86050556-86050575 None:intergenic 40.0%
ATTCTTCTTTCTTGTCCCAG+AGG - chr6_1:86050717-86050736 Msa0896250:intron 40.0%
TTCTTCTTTCTTGTCCCAGA+GGG - chr6_1:86050718-86050737 Msa0896250:intron 40.0%
! GTAGACATTGATTAACCCTC+TGG + chr6_1:86050736-86050755 None:intergenic 40.0%
AGTGCTTGTTTCACAGAAGA+TGG - chr6_1:86050878-86050897 Msa0896250:intron 40.0%
CAACATACTTCAGGAACCAA+AGG - chr6_1:86051186-86051205 Msa0896250:intron 40.0%
CATTTCATTGCAAGTGTGTC+TGG - chr6_1:86051217-86051236 Msa0896250:intron 40.0%
! GTCTGGTCAGAAGTATAACA+TGG - chr6_1:86051358-86051377 Msa0896250:CDS 40.0%
! AGTCACTCCTTTTTACTCGA+AGG + chr6_1:86051397-86051416 None:intergenic 40.0%
ATCAAACACTCTCGAACCAT+AGG + chr6_1:86051425-86051444 None:intergenic 40.0%
! AGAGTGTTTGATCATGTCGT+AGG - chr6_1:86051433-86051452 Msa0896250:intron 40.0%
AACCTACATCAAACTCGAGT+GGG + chr6_1:86051507-86051526 None:intergenic 40.0%
AAACCTACATCAAACTCGAG+TGG + chr6_1:86051508-86051527 None:intergenic 40.0%
TGTGCAGCAAATTAGTACTC+TGG - chr6_1:86051768-86051787 Msa0896250:intron 40.0%
! TTGGGAAGTCCTTTTTACGA+TGG - chr6_1:86051819-86051838 Msa0896250:intron 40.0%
! TGGGAAGTCCTTTTTACGAT+GGG - chr6_1:86051820-86051839 Msa0896250:intron 40.0%
ACGATGGGAATCATTGGATT+AGG - chr6_1:86051835-86051854 Msa0896250:intron 40.0%
!! TTGCTTTTCGCTCTTCTCAT+TGG - chr6_1:86051862-86051881 Msa0896250:intron 40.0%
CAAAACTTTCTTCAGGCTCT+TGG - chr6_1:86051892-86051911 Msa0896250:intron 40.0%
TTCTTCAGGCTCTTGGAAAA+AGG - chr6_1:86051899-86051918 Msa0896250:intron 40.0%
ACAAGCTGAACGTTACAACT+GGG - chr6_1:86052362-86052381 Msa0896250:CDS 40.0%
ATTTGCCAGAAGATCTTCAG+AGG - chr6_1:86052424-86052443 Msa0896250:CDS 40.0%
TTTGCCAGAAGATCTTCAGA+GGG - chr6_1:86052425-86052444 Msa0896250:CDS 40.0%
! ATATCCCTCTGAAGATCTTC+TGG + chr6_1:86052432-86052451 None:intergenic 40.0%
CTAAACAAACACCTCATCGT+CGG + chr6_1:86052504-86052523 None:intergenic 40.0%
CAGAATAGGATCATCCATCA+AGG + chr6_1:86052597-86052616 None:intergenic 40.0%
! CTTGATGGATGATCCTATTC+TGG - chr6_1:86052595-86052614 Msa0896250:CDS 40.0%
TTGTCTTAGTCTCTCGCAAA+TGG + chr6_1:86052624-86052643 None:intergenic 40.0%
! TTTTGTCGTGCGTGGAAAAT+TGG - chr6_1:86052703-86052722 Msa0896250:CDS 40.0%
! CGTGGAAAATTGGAGAGTAT+TGG - chr6_1:86052713-86052732 Msa0896250:CDS 40.0%
!! TTGGAGAGTATTGGTGAAGA+TGG - chr6_1:86052722-86052741 Msa0896250:CDS 40.0%
! ATTCGAGTTCCTCTATCTGA+AGG - chr6_1:86052746-86052765 Msa0896250:five_prime_UTR 40.0%
GTGGTGAAGAACTTCTTACA+TGG - chr6_1:86052777-86052796 Msa0896250:intron 40.0%
GAGCATACTTCAGGAAACAA+AGG - chr6_1:86052806-86052825 Msa0896250:intron 40.0%
GGAGAGATATCATGAGACTA+AGG + chr6_1:86052890-86052909 None:intergenic 40.0%
ATTGTGCCTAACAAATGTGG+AGG - chr6_1:86053414-86053433 Msa0896250:intron 40.0%
! GCCTTTTTGCAAGATTCTTG+AGG - chr6_1:86053476-86053495 Msa0896250:intron 40.0%
TCGTTTCGCTTACATACATG+TGG + chr6_1:86053843-86053862 None:intergenic 40.0%
AGGATTCATAAGGGTGAGTG+GGG + chr6_1:86046501-86046520 None:intergenic 45.0%
GAAGGATTCATAAGGGTGAG+TGG + chr6_1:86046503-86046522 None:intergenic 45.0%
TAAGCTATCCTGAGCTAGCT+AGG - chr6_1:86046875-86046894 Msa0896250:intron 45.0%
TAAGCTATCCTAGCTAGCTC+AGG + chr6_1:86046886-86046905 None:intergenic 45.0%
GGCTCAAACAACTCAAACAG+TGG + chr6_1:86047506-86047525 None:intergenic 45.0%
!! GGCTGAGTTTGATAGTGACA+AGG - chr6_1:86047670-86047689 Msa0896250:CDS 45.0%
! TCTGGAATCTAGAACCGTCA+GGG + chr6_1:86047736-86047755 None:intergenic 45.0%
!! TTCTGGAATCTAGAACCGTC+AGG + chr6_1:86047737-86047756 None:intergenic 45.0%
GTGTCCTAGGTACAAGATTC+TGG + chr6_1:86047754-86047773 None:intergenic 45.0%
ATCGATACACTTCGTGTCCT+AGG + chr6_1:86047767-86047786 None:intergenic 45.0%
TATGGTTCCGTAGGAGTCAT+GGG + chr6_1:86047797-86047816 None:intergenic 45.0%
ATATGGTTCCGTAGGAGTCA+TGG + chr6_1:86047798-86047817 None:intergenic 45.0%
CTCCTACGGAACCATATGAA+AGG - chr6_1:86047801-86047820 Msa0896250:CDS 45.0%
TCCCTTTCATATGGTTCCGT+AGG + chr6_1:86047806-86047825 None:intergenic 45.0%
TTCTGCCCGAAAAGATTTCC+AGG + chr6_1:86047920-86047939 None:intergenic 45.0%
!! CTTTCCACTGGTTTGCTCAT+TGG + chr6_1:86047953-86047972 None:intergenic 45.0%
TTCGGGTCTGTTCAATCCTA+AGG - chr6_1:86048144-86048163 Msa0896250:intron 45.0%
CCTGTGATACTTTGTCTAGG+TGG + chr6_1:86048395-86048414 None:intergenic 45.0%
! CCACCTAGACAAAGTATCAC+AGG - chr6_1:86048392-86048411 Msa0896250:intron 45.0%
TGCCAAGTTAGATGCTACTG+CGG + chr6_1:86048431-86048450 None:intergenic 45.0%
! TGTTCTCTATGGTGATGCCA+AGG - chr6_1:86048737-86048756 Msa0896250:intron 45.0%
! TCTATGGTGATGCCAAGGAT+TGG - chr6_1:86048742-86048761 Msa0896250:intron 45.0%
! CTATGGTGATGCCAAGGATT+GGG - chr6_1:86048743-86048762 Msa0896250:intron 45.0%
CATTCTTCTTGCCCAATCCT+TGG + chr6_1:86048757-86048776 None:intergenic 45.0%
GTACTCTTCTGTGACGTAGT+AGG - chr6_1:86049524-86049543 Msa0896250:CDS 45.0%
!! GCAGTTTAGGTTGGCTTATG+TGG - chr6_1:86049577-86049596 Msa0896250:CDS 45.0%
TGTTGTACTTCCACTTCCTC+AGG - chr6_1:86049697-86049716 Msa0896250:intron 45.0%
GAGATTGAGAGAGTTACCTG+AGG + chr6_1:86049716-86049735 None:intergenic 45.0%
GGGACATGGTTCAAATCTCT+CGG - chr6_1:86050169-86050188 Msa0896250:intron 45.0%
GGACATGGTTCAAATCTCTC+GGG - chr6_1:86050170-86050189 Msa0896250:intron 45.0%
! CCTGATGTTCCCAAGTGTTT+TGG + chr6_1:86050350-86050369 None:intergenic 45.0%
CCAAAACACTTGGGAACATC+AGG - chr6_1:86050347-86050366 Msa0896250:intron 45.0%
AATGTACTGAGCAAGGACGA+CGG + chr6_1:86050402-86050421 None:intergenic 45.0%
GACTCGAAGATGAATCCAGT+TGG + chr6_1:86050461-86050480 None:intergenic 45.0%
ATTCATCTTCGAGTCGGCAT+GGG - chr6_1:86050466-86050485 Msa0896250:intron 45.0%
AACATGGCCAGACAGCATAA+AGG + chr6_1:86050516-86050535 None:intergenic 45.0%
TTCATCCAATGAGCCCAATC+TGG + chr6_1:86050845-86050864 None:intergenic 45.0%
CTTTGTCAAGGCCAACACTT+GGG + chr6_1:86051269-86051288 None:intergenic 45.0%
ATGACGGCCTTCGAGTAAAA+AGG - chr6_1:86051387-86051406 Msa0896250:intron 45.0%
! AAGGAGTGACTTGTGTCCTA+TGG - chr6_1:86051406-86051425 Msa0896250:intron 45.0%
TAAGTGAAGCTCTCACCTCA+AGG - chr6_1:86051462-86051481 Msa0896250:intron 45.0%
AAGGTGGATCTCAAACAGCA+CGG - chr6_1:86051481-86051500 Msa0896250:intron 45.0%
GCAGCAAATTAGTACTCTGG+CGG - chr6_1:86051771-86051790 Msa0896250:intron 45.0%
CAGCAAATTAGTACTCTGGC+GGG - chr6_1:86051772-86051791 Msa0896250:intron 45.0%
TTGAGCAATGGATGAGCCAT+AGG - chr6_1:86052149-86052168 Msa0896250:intron 45.0%
GCTTAGCAGATGATCTGAGA+AGG - chr6_1:86052173-86052192 Msa0896250:intron 45.0%
GACAAGCTGAACGTTACAAC+TGG - chr6_1:86052361-86052380 Msa0896250:CDS 45.0%
TCGCAAATGGCATCCAGAAT+AGG + chr6_1:86052611-86052630 None:intergenic 45.0%
!! TGATGGTGGCTTAGTAGAGA+AGG - chr6_1:86052676-86052695 Msa0896250:CDS 45.0%
TGGTGTCTTGAGCATACTTC+AGG - chr6_1:86052797-86052816 Msa0896250:intron 45.0%
TTCAAGGTCTGCTGCTCTTA+GGG + chr6_1:86053446-86053465 None:intergenic 45.0%
TTCTGTATCTCCATGCAACC+TGG + chr6_1:86053755-86053774 None:intergenic 45.0%
!! TAAAAAATTATGTATAATTA+TGG + chr6_1:86048636-86048655 None:intergenic 5.0%
! ACCTGTTTGGAGCTGACAAC+TGG + chr6_1:86046695-86046714 None:intergenic 50.0%
!! CACTGGTTTGCTCATTGGCA+CGG + chr6_1:86047948-86047967 None:intergenic 50.0%
ACCAACCACTCTAGACTCAG+GGG + chr6_1:86049603-86049622 None:intergenic 50.0%
CACCAACCACTCTAGACTCA+GGG + chr6_1:86049604-86049623 None:intergenic 50.0%
GAGAGAGTTACCTGAGGAAG+TGG + chr6_1:86049710-86049729 None:intergenic 50.0%
GATTCATCTTCGAGTCGGCA+TGG - chr6_1:86050465-86050484 Msa0896250:intron 50.0%
ATGCTGTCTGGCCATGTTGT+TGG - chr6_1:86050518-86050537 Msa0896250:intron 50.0%
ACCACCATGAGCCAACAACA+TGG + chr6_1:86050532-86050551 None:intergenic 50.0%
!! GTGGTACCTCTTTGGTTTGC+AGG - chr6_1:86050547-86050566 Msa0896250:intron 50.0%
!! TTGTGGTCATGGAAGCACTC+AGG - chr6_1:86050805-86050824 Msa0896250:intron 50.0%
GCTTTGTCAAGGCCAACACT+TGG + chr6_1:86051270-86051289 None:intergenic 50.0%
CAACGCTCCATTGTGTCTCA+CGG + chr6_1:86051335-86051354 None:intergenic 50.0%
!! ACAATGGAGCGTTGGATGTC+TGG - chr6_1:86051341-86051360 Msa0896250:CDS 50.0%
! GCTGTTTGAGATCCACCTTG+AGG + chr6_1:86051480-86051499 None:intergenic 50.0%
GACAACGCGATGTTGAGCAA+TGG - chr6_1:86052137-86052156 Msa0896250:intron 50.0%
GATCATCTGCTAAGCGCCTA+TGG + chr6_1:86052168-86052187 None:intergenic 50.0%
TGGTGGCTTAGTAGAGAAGG+TGG - chr6_1:86052679-86052698 Msa0896250:CDS 50.0%
! AAGGTGGTTTTTGTCGTGCG+TGG - chr6_1:86052695-86052714 Msa0896250:CDS 50.0%
CTTCAAGGTCTGCTGCTCTT+AGG + chr6_1:86053447-86053466 None:intergenic 50.0%
GCAAGATTCTTGAGGAGTCC+TGG - chr6_1:86053484-86053503 Msa0896250:intron 50.0%
TTGAGGAGTCCTGGTGTTCA+AGG - chr6_1:86053493-86053512 Msa0896250:intron 50.0%
CTTATGGCTCCTTGAACACC+AGG + chr6_1:86053505-86053524 None:intergenic 50.0%
CTGGTGTTCAAGGAGCCATA+AGG - chr6_1:86053503-86053522 Msa0896250:intron 50.0%
GCCAGTTGTCAGCTCCAAAC+AGG - chr6_1:86046691-86046710 Msa0896250:intron 55.0%
CGTGCCAATGAGCAAACCAG+TGG - chr6_1:86047946-86047965 Msa0896250:CDS 55.0%
CGCCGCAGTAGCATCTAACT+TGG - chr6_1:86048426-86048445 Msa0896250:intron 55.0%
GCACCAACCACTCTAGACTC+AGG + chr6_1:86049605-86049624 None:intergenic 55.0%
! GAGTCTAGAGTGGTTGGTGC+TGG - chr6_1:86049605-86049624 Msa0896250:CDS 55.0%
!! CTGGCCATGTTGTTGGCTCA+TGG - chr6_1:86050525-86050544 Msa0896250:intron 55.0%
!! GCCATGTTGTTGGCTCATGG+TGG - chr6_1:86050528-86050547 Msa0896250:intron 55.0%
GGCTCATGGTGGTACCTCTT+TGG - chr6_1:86050539-86050558 Msa0896250:intron 55.0%
AGGGACCAGATTGGGCTCAT+TGG - chr6_1:86050837-86050856 Msa0896250:intron 55.0%
CAAGGCCAACACTTGGGCAT+CGG + chr6_1:86051263-86051282 None:intergenic 55.0%
CCATTGTGTCTCACGGATGG+AGG + chr6_1:86051328-86051347 None:intergenic 55.0%
CCTCCATCCGTGAGACACAA+TGG - chr6_1:86051325-86051344 Msa0896250:CDS 55.0%
GCTCCATTGTGTCTCACGGA+TGG + chr6_1:86051331-86051350 None:intergenic 55.0%
CGTGAGACACAATGGAGCGT+TGG - chr6_1:86051333-86051352 Msa0896250:CDS 55.0%
GTGAAGCTCTCACCTCAAGG+TGG - chr6_1:86051465-86051484 Msa0896250:intron 55.0%
GGCCCACTCGAGTTTGATGT+AGG - chr6_1:86051502-86051521 Msa0896250:CDS 55.0%
TACAACTGGGCTGCAACGAG+AGG - chr6_1:86052375-86052394 Msa0896250:CDS 55.0%
GCTGCGAGACATCTCCAGTA+AGG + chr6_1:86053723-86053742 None:intergenic 55.0%
CTACGCGAATCCAGGTTGCA+TGG - chr6_1:86053742-86053761 Msa0896250:five_prime_UTR 55.0%
TGTGGCCCCTGAGTCTAGAG+TGG - chr6_1:86049595-86049614 Msa0896250:CDS 60.0%
! GCCCCTGAGTCTAGAGTGGT+TGG - chr6_1:86049599-86049618 Msa0896250:CDS 60.0%
TACCGCCGATGCCCAAGTGT+TGG - chr6_1:86051255-86051274 Msa0896250:intron 60.0%
TCTCGCAGCTACGCGAATCC+AGG - chr6_1:86053734-86053753 Msa0896250:five_prime_UTR 60.0%
!! GGCATCGGCGGTACACTCAC+AGG + chr6_1:86051248-86051267 None:intergenic 65.0%
!! GGCCAACACTTGGGCATCGG+CGG + chr6_1:86051260-86051279 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 86046298 86054113 86046298 ID=Msa0896250;Name=Msa0896250
chr6_1 mRNA 86046298 86054113 86046298 ID=Msa0896250-mRNA-1;Parent=Msa0896250;Name=Msa0896250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=411|0.90|1|1|0.72|0.75|12|289|641
chr6_1 exon 86046298 86046701 86046298 ID=Msa0896250-mRNA-1:exon:14540;Parent=Msa0896250-mRNA-1
chr6_1 exon 86046887 86047049 86046887 ID=Msa0896250-mRNA-1:exon:14539;Parent=Msa0896250-mRNA-1
chr6_1 exon 86047584 86047830 86047584 ID=Msa0896250-mRNA-1:exon:14538;Parent=Msa0896250-mRNA-1
chr6_1 exon 86047929 86048058 86047929 ID=Msa0896250-mRNA-1:exon:14537;Parent=Msa0896250-mRNA-1
chr6_1 exon 86048217 86048294 86048217 ID=Msa0896250-mRNA-1:exon:14536;Parent=Msa0896250-mRNA-1
chr6_1 exon 86048491 86048636 86048491 ID=Msa0896250-mRNA-1:exon:14535;Parent=Msa0896250-mRNA-1
chr6_1 exon 86049417 86049674 86049417 ID=Msa0896250-mRNA-1:exon:14534;Parent=Msa0896250-mRNA-1
chr6_1 exon 86051306 86051404 86051306 ID=Msa0896250-mRNA-1:exon:14533;Parent=Msa0896250-mRNA-1
chr6_1 exon 86051491 86051682 86051491 ID=Msa0896250-mRNA-1:exon:14532;Parent=Msa0896250-mRNA-1
chr6_1 exon 86052246 86052766 86052246 ID=Msa0896250-mRNA-1:exon:14531;Parent=Msa0896250-mRNA-1
chr6_1 exon 86053699 86053806 86053699 ID=Msa0896250-mRNA-1:exon:14530;Parent=Msa0896250-mRNA-1
chr6_1 exon 86053834 86054113 86053834 ID=Msa0896250-mRNA-1:exon:14529;Parent=Msa0896250-mRNA-1
chr6_1 five_prime_UTR 86053834 86054113 86053834 ID=Msa0896250-mRNA-1:five_prime_utr;Parent=Msa0896250-mRNA-1
chr6_1 five_prime_UTR 86053699 86053806 86053699 ID=Msa0896250-mRNA-1:five_prime_utr;Parent=Msa0896250-mRNA-1
chr6_1 five_prime_UTR 86052744 86052766 86052744 ID=Msa0896250-mRNA-1:five_prime_utr;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86052246 86052743 86052246 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86051491 86051682 86051491 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86051306 86051404 86051306 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86049417 86049674 86049417 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86048491 86048636 86048491 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86048217 86048294 86048217 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86047929 86048058 86047929 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86047584 86047830 86047584 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86046887 86047049 86046887 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 CDS 86046587 86046701 86046587 ID=Msa0896250-mRNA-1:cds;Parent=Msa0896250-mRNA-1
chr6_1 three_prime_UTR 86046298 86046586 86046298 ID=Msa0896250-mRNA-1:three_prime_utr;Parent=Msa0896250-mRNA-1
Gene Sequence

>Msa0896250

ATGGCTGAGTTTGATAGTGACAAGGTGCCGATTCTGTCAGATGCTAATCCAAAACAGTCAAATGACCCTGACGGTTCTAGATTCCAGAATCTTGTACCTAGGACACGAAGTGTATCGATTTCTATTCCCATGACTCCTACGGAACCATATGAAAGGGATACTAATTTCAAGGGACACACAGGTCCTCTAACGAGTCAAAGAAAAGCTTCATTTAATCCAATGAGTGGTCCATTATATGTTACTCATACACCTGGAAATCTTTTCGGGCAGAATATGGCCGTGCCAATGAGCAAACCAGTGGAAAGTAATACTGAAAAATTTCCTTTATGTGGCATGAATGAACATGGTTTGCAGAATAACAATGCTGGTAAAAATGAACATTTACTAAGGTCTGGTCAGTTGGGAATGTGTAATGATCCTTACTGTACTACTTGTCCAACTTACTTCAAGGCTACTCAACAAAGCGATTTGAAAAGTTCGGGTCTGTTCAATCCTAAGTTTCAGAATGTTCTCTATGGTGATGCCAAGGATTGGGCAAGAAGAATGTTTGCTTTCTTGATTCCACATGTACCTAGAGTTATAAATCCACATAATAAACTTGTACATCAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTCTTCTTGCTATCTGTGGATAAGGACCATAAATGTATTGTTCTTAACTCAACAATGACAACAGTGCTTGTTTTTCTTAGAAGTGTGAATGATTTCATACATTTCCTAAATATTATCCTTCAGAGGGTTAATCAATGTCTACGAAATGCGTGCAAGCATATATATTTTGATGAATGCTCAAAACTCATTGATTGTGGTCATGGAAGCACTCAGGAATATCAAAAGGGACCAGATTGGGCTCATTGGATGAAAAATGACAATGCAAGTGCTTGTTTCACAGAAGATGGTTTTGAGTATGGAATCTATCTTAAAGCAGTCAACCTTACTACAAAATCTAATGTTCTTACAAGATATGTATATTCATCATTTTGGGGATTTCAGCAAATTAGTACTCTGGCGGGAAATTTGACACCAAGCTATTTTATTTGGGAAGTCCTTTTTACGATGGGAATCATTGGATTAGGACTCTTGCTTTTCGCTCTTCTCATTGGAAACATACAAAACTTTCTTCAGGCTCTTGGAAAAAGGAGGCTAGAAATGTCACTTAGACAACGCGATGTTGAGCAATGGATGAGCCATAGGCGCTTAGCAGATGATCTGAGAAGGAGAGTGCGACAAGCTGAACGTTACAACTGGGCTGCAACGAGAGGAGTGAATGAAGAAATACTCATGGAGAATTTGCCAGAAGATCTTCAGAGGGATATTAGACGACATCTCTTTAGATTTGTTAAGAAGGTTCGAATATTTTCCTTGATGGATGATCCTATTCTGGATGCCATTTGCGAGAGACTAAGACAAAAAATTTACATCAAAGGAAGCAAAATTTTGTATGATGGTGGCTTAGTAGAGAAGGTGGTTTTTGTCGTGCGTGGAAAATTGGAGAGTATTGGTGAAGATGGAATTCGAGTTCCTCTATCTGAAGGAAATGTTTGTGGTGAAGAACTTCTTACATGGTGTCTTGAGCATACTTCAGGAAACAAAGTTTGTGCTAAAACAAGAATTCCAAGACAAAGATTGGTTAGCAATAGAACAGTATTGTGCCTAACAAATGTGGAGGCATTTTCCCTAAGAGCAGCAGACCTTGAAGAAGTTACAAGCCTTTTTGCAAGATTCTTGAGGAGTCCTGGTGTTCAAGGAGCCATAAGGTATGAATCACCTTACTGGAGATGTCTCGCAGCTACGCGAATCCAGGTTGCATGGAGATACAGAAAGAAACGTCTTTGTCGCGCCGACACTTCACAATCAAATAATCAAACATAA
Protein sequence

>Msa0896250

MAEFDSDKVPILSDANPKQSNDPDGSRFQNLVPRTRSVSISIPMTPTEPYERDTNFKGHTGPLTSQRKASFNPMSGPLYVTHTPGNLFGQNMAVPMSKPVESNTEKFPLCGMNEHGLQNNNAGKNEHLLRSGQLGMCNDPYCTTCPTYFKATQQSDLKSSGLFNPKFQNVLYGDAKDWARRMFAFLIPHVPRVINPHNKLVHQWNKFFAICCLVAIFVDPLFFFLLSVDKDHKCIVLNSTMTTVLVFLRSVNDFIHFLNIILQRVNQCLRNACKHIYFDECSKLIDCGHGSTQEYQKGPDWAHWMKNDNASACFTEDGFEYGIYLKAVNLTTKSNVLTRYVYSSFWGFQQISTLAGNLTPSYFIWEVLFTMGIIGLGLLLFALLIGNIQNFLQALGKRRLEMSLRQRDVEQWMSHRRLADDLRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFRFVKKVRIFSLMDDPILDAICERLRQKIYIKGSKILYDGGLVEKVVFVVRGKLESIGEDGIRVPLSEGNVCGEELLTWCLEHTSGNKVCAKTRIPRQRLVSNRTVLCLTNVEAFSLRAADLEEVTSLFARFLRSPGVQGAIRYESPYWRCLAATRIQVAWRYRKKRLCRADTSQSNNQT*