AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799290 MtrunA17_Chr5g0404321 97.596 416 10 0 1 416 1 416 0.0 841
Msa0799290 MtrunA17_Chr8g0373001 74.519 416 102 2 1 416 1 412 0.0 649
Msa0799290 MtrunA17_Chr1g0155301 62.903 434 131 8 1 416 1 422 0.0 527
Msa0799290 MtrunA17_Chr8g0373361 58.111 413 151 9 1 409 11 405 1.97e-159 455
Msa0799290 MtrunA17_Chr2g0278511 55.069 434 170 12 1 416 1 427 1.07e-153 441
Msa0799290 MtrunA17_Chr2g0286441 57.182 369 151 3 48 416 32 393 1.57e-149 429
Msa0799290 MtrunA17_Chr1g0201891 53.182 440 173 12 1 416 1 431 6.26e-149 429
Msa0799290 MtrunA17_Chr1g0196071 52.871 418 179 7 1 416 1 402 3.18e-146 421
Msa0799290 MtrunA17_Chr8g0373331 51.090 413 129 9 1 407 1 346 8.66e-132 382
Msa0799290 MtrunA17_Chr2g0315641 50.829 362 146 2 55 416 42 371 2.35e-127 372
Msa0799290 MtrunA17_Chr2g0315651 44.772 373 167 6 48 416 30 367 4.20e-101 305
Msa0799290 MtrunA17_Chr8g0373351 45.663 392 95 11 37 413 3 291 9.75e-95 286
Msa0799290 MtrunA17_Chr1g0156151 51.982 227 101 2 1 223 1 223 3.32e-76 236
Msa0799290 MtrunA17_Chr8g0373341 53.333 225 59 6 1 207 1 197 1.16e-55 186
Msa0799290 MtrunA17_Chr8g0373341 55.556 117 51 1 291 406 204 320 4.43e-34 129
Msa0799290 MtrunA17_Chr3g0091401 71.134 97 22 1 98 194 9 99 2.84e-37 131
Msa0799290 MtrunA17_Chr2g0334041 36.697 109 54 4 313 415 260 359 1.55e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799290 AT2G18280.2 63.876 418 124 7 1 416 1 393 0.0 518
Msa0799290 AT2G18280.1 63.876 418 124 7 1 416 1 393 0.0 518
Msa0799290 AT1G47270.3 58.333 396 131 9 32 416 16 388 9.58e-155 442
Msa0799290 AT1G47270.1 58.333 396 131 9 32 416 41 413 1.23e-154 443
Msa0799290 AT1G47270.2 58.333 396 131 9 32 416 40 412 1.40e-154 443
Msa0799290 AT1G25280.1 53.795 448 172 9 1 416 1 445 1.42e-153 442
Msa0799290 AT2G47900.3 53.589 418 181 5 1 416 1 407 6.76e-152 436
Msa0799290 AT2G47900.2 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0799290 AT2G47900.1 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0799290 AT1G76900.2 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0799290 AT1G76900.1 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0799290 AT1G76900.3 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0799290 AT1G43640.1 50.000 442 182 12 1 416 1 429 1.51e-142 413
Msa0799290 AT5G18680.1 53.887 373 147 7 51 416 35 389 2.56e-130 380
Msa0799290 AT1G43640.2 52.151 372 147 9 67 416 1 363 1.84e-128 375
Msa0799290 AT3G06380.1 51.671 389 168 7 31 416 9 380 4.05e-128 375
Msa0799290 AT1G53320.1 51.934 362 148 3 55 416 44 379 1.60e-124 365
Msa0799290 AT5G18680.2 54.369 309 117 6 114 416 7 297 1.69e-105 314
Msa0799290 AT3G06380.2 54.153 301 119 6 118 416 5 288 2.10e-101 303
Msa0799290 AT1G25280.3 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0799290 AT1G25280.2 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0799290 AT1G61940.2 50.575 87 43 0 58 144 1 87 4.21e-26 106
Msa0799290 AT1G61940.1 54.098 61 28 0 58 118 1 61 6.01e-16 77.4

Find 146 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 5_3:+12444261 None:intergenic
TTTATGTTAGTTGTTGTATC+TGG 0.216186 5_3:-12443531 Msa0799290:three_prime_UTR
CCAATTGGATCTTTACCTTT+TGG 0.222216 5_3:+12444015 None:intergenic
TAACACGGCCCTTGAAATTT+AGG 0.254077 5_3:+12443878 None:intergenic
CTGCCTCTGTTTCTCCGATT+TGG 0.257203 5_3:-12446853 Msa0799290:five_prime_UTR
CCAGCAGGAGATTTCATTCT+AGG 0.267212 5_3:-12444248 Msa0799290:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 5_3:-12443752 Msa0799290:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 5_3:-12444494 Msa0799290:CDS
TGTTGGTGGCGGACCCTCTT+CGG 0.290583 5_3:-12446941 Msa0799290:five_prime_UTR
CTAAAATTAAATTTAGTTGC+AGG 0.290792 5_3:+12443480 None:intergenic
ATCACCTGCTTTAACGAAAT+AGG 0.313540 5_3:+12445788 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 5_3:+12443909 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 5_3:-12443772 Msa0799290:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 5_3:+12445814 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 5_3:-12443980 Msa0799290:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 5_3:+12445815 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 5_3:-12443781 Msa0799290:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 5_3:-12444115 Msa0799290:CDS
GTTGGTGGCGGACCCTCTTC+GGG 0.370624 5_3:-12446940 Msa0799290:five_prime_UTR
TAGAAGAGACCGAGACTTCT+TGG 0.372683 5_3:-12445916 Msa0799290:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 5_3:-12445612 Msa0799290:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 5_3:+12444144 None:intergenic
TTAGCTGATTTGTTCGTTTG+AGG 0.395892 5_3:-12446756 Msa0799290:five_prime_UTR
CGATTCATGCCACACCATTC+CGG 0.400750 5_3:-12446989 Msa0799290:five_prime_UTR
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 5_3:-12443950 Msa0799290:CDS
TAAAGCTGTTAAGGAGATGA+AGG 0.412584 5_3:+12446893 None:intergenic
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 5_3:+12443793 None:intergenic
GAAATACAAGGCAACTATAT+AGG 0.419249 5_3:+12443428 None:intergenic
CTCATAACATAAACATAGGT+TGG 0.424399 5_3:-12447015 Msa0799290:five_prime_UTR
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 5_3:-12443887 Msa0799290:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 5_3:+12444078 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 5_3:-12445981 Msa0799290:CDS
AATACTAACGACCGATTGTC+AGG 0.447228 5_3:+12443558 None:intergenic
AGTGATGTTAGAGTGATATC+AGG 0.447610 5_3:+12446007 None:intergenic
ATGCCACACCATTCCGGTTG+CGG 0.449706 5_3:-12446983 Msa0799290:five_prime_UTR
GAATTGCTTAAATCTCCAAT+TGG 0.451744 5_3:+12444000 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 5_3:+12444302 None:intergenic
GAAGGAGGCGTTGAAAATTC+CGG 0.455460 5_3:+12446911 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 5_3:-12445650 Msa0799290:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 5_3:+12445980 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 5_3:-12444015 Msa0799290:CDS
TAAAATTAAATTTAGTTGCA+GGG 0.470751 5_3:+12443481 None:intergenic
ATCACTTGAACCTATTCAGC+AGG 0.471218 5_3:-12445990 Msa0799290:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 5_3:+12444216 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 5_3:-12444291 Msa0799290:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 5_3:-12443903 Msa0799290:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 5_3:+12444253 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 5_3:+12444176 None:intergenic
CTTGTATTTCTCACCACACA+TGG 0.480634 5_3:-12443415 Msa0799290:three_prime_UTR
CGGAATGGTGTGGCATGAAT+CGG 0.481540 5_3:+12446990 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 5_3:-12446099 Msa0799290:CDS
CTGAATGTTCTCCGCACTAG+AGG 0.484848 5_3:-12444168 Msa0799290:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 5_3:-12444454 Msa0799290:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 5_3:-12444263 Msa0799290:CDS
TTTACTCATAACATAAACAT+AGG 0.496397 5_3:-12447019 Msa0799290:five_prime_UTR
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 5_3:+12443961 None:intergenic
GTAATTTGAGGAAAAGATGT+AGG 0.503684 5_3:+12444072 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 5_3:-12446100 Msa0799290:CDS
TGCAGCTGTTCATGCCATCT+GGG 0.506117 5_3:+12443910 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 5_3:-12445792 Msa0799290:intron
AAACCAGCGGACTATAACCA+TGG 0.507514 5_3:+12443646 None:intergenic
TTTCACGGCGGTGTTGGTGG+CGG 0.510082 5_3:-12446952 Msa0799290:five_prime_UTR
GATGTTTGCAGTTATTGTGC+TGG 0.512169 5_3:-12446173 Msa0799290:intron
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 5_3:+12444111 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 5_3:-12443967 Msa0799290:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 5_3:-12444244 Msa0799290:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 5_3:+12443664 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 5_3:+12443943 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 5_3:-12443845 Msa0799290:CDS
GTGAGATGCAGCCTGACAAT+CGG 0.535093 5_3:-12443569 Msa0799290:three_prime_UTR
GAAACGACAACAGCACGTGC+AGG 0.536741 5_3:+12445893 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 5_3:+12444248 None:intergenic
AAATGCTCATCAGTAATTTG+AGG 0.539761 5_3:+12444060 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 5_3:-12444111 Msa0799290:CDS
TGTCGTTGAGAAGCATAGTA+CGG 0.541748 5_3:-12446123 Msa0799290:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 5_3:-12444110 Msa0799290:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 5_3:-12446063 Msa0799290:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 5_3:+12443708 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 5_3:+12444311 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 5_3:-12445868 Msa0799290:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 5_3:+12443950 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 5_3:+12444289 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 5_3:-12445982 Msa0799290:CDS
ACGTGCAGGCCAAGAAGTCT+CGG 0.554427 5_3:+12445907 None:intergenic
AAGCATAGTACGGGAACTCA+AGG 0.555180 5_3:-12446113 Msa0799290:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 5_3:+12443974 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 5_3:-12446094 Msa0799290:CDS
GATCCATGGTTATAGTCCGC+TGG 0.557580 5_3:-12443649 Msa0799290:three_prime_UTR
TGCTACTTGATATAATTCGA+AGG 0.558581 5_3:-12445940 Msa0799290:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 5_3:-12444109 Msa0799290:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 5_3:+12445666 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 5_3:+12445648 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 5_3:+12444157 None:intergenic
AATGGATTCCGCAACCGGAA+TGG 0.565534 5_3:+12446975 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 5_3:-12444108 Msa0799290:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 5_3:+12443975 None:intergenic
GTCGTTGAGAAGCATAGTAC+GGG 0.569276 5_3:-12446122 Msa0799290:CDS
ATATCTATTGTACTATGGAC+TGG 0.572719 5_3:-12445607 Msa0799290:CDS
AGGGCTATAGAATGACATAC+AGG 0.575549 5_3:+12443500 None:intergenic
GCTACTTGATATAATTCGAA+GGG 0.575810 5_3:-12445939 Msa0799290:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 5_3:-12444030 Msa0799290:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 5_3:+12443704 None:intergenic
AACATTCAGCTCATAGGCAA+TGG 0.582469 5_3:+12444182 None:intergenic
GAACCAAATCGGAGAAACAG+AGG 0.582674 5_3:+12446850 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 5_3:-12444272 Msa0799290:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 5_3:-12445647 Msa0799290:CDS
TTATGCACAATTCTTCAGCA+TGG 0.590762 5_3:-12443591 Msa0799290:three_prime_UTR
TACGGGAACTCAAGGAGATG+AGG 0.591073 5_3:-12446105 Msa0799290:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 5_3:+12445841 None:intergenic
ACGGGAACTCAAGGAGATGA+GGG 0.594362 5_3:-12446104 Msa0799290:CDS
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 5_3:-12443797 Msa0799290:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 5_3:-12444444 Msa0799290:intron
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 5_3:-12443966 Msa0799290:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 5_3:+12443811 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 5_3:-12446048 Msa0799290:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 5_3:+12443725 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 5_3:+12443699 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 5_3:-12443872 Msa0799290:CDS
CAGCATGTGAATGAGATCCA+TGG 0.613020 5_3:-12443663 Msa0799290:exon
ATAATGAAGCTTCTAAAACC+CGG 0.616872 5_3:+12446809 None:intergenic
TGAATGTTCTCCGCACTAGA+GGG 0.618617 5_3:-12444167 Msa0799290:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 5_3:+12443718 None:intergenic
TTCCGGCGAAAACCCGAAGA+GGG 0.630212 5_3:+12446928 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 5_3:-12445864 Msa0799290:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 5_3:+12444498 None:intergenic
TTGTATTTCTCACCACACAT+GGG 0.641041 5_3:-12443414 Msa0799290:three_prime_UTR
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 5_3:-12445824 Msa0799290:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 5_3:-12443886 Msa0799290:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 5_3:+12443863 None:intergenic
ATTCCGGCGAAAACCCGAAG+AGG 0.644601 5_3:+12446927 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 5_3:+12444285 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 5_3:-12445865 Msa0799290:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 5_3:-12446076 Msa0799290:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 5_3:+12445950 None:intergenic
CATGTGTGGTGAGAAATACA+AGG 0.651293 5_3:+12443416 None:intergenic
ATTCCGCAACCGGAATGGTG+TGG 0.659382 5_3:+12446980 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 5_3:+12444282 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 5_3:+12445660 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 5_3:-12445646 Msa0799290:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 5_3:-12445989 Msa0799290:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 5_3:-12446071 Msa0799290:CDS
CTAACAATATAGTTACACGC+TGG 0.696992 5_3:+12444207 None:intergenic
ATGGGATTGGTAATACGTCG+AGG 0.700501 5_3:-12446081 Msa0799290:CDS
TATGACAGCCAACCTCCACA+CGG 0.700970 5_3:-12444297 Msa0799290:CDS
AGCTGTTAAGGAGATGAAGG+AGG 0.704439 5_3:+12446896 None:intergenic
ACAACAGCAATACCCATGTG+TGG 0.714668 5_3:+12443402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTGTTATGTTGT+TGG - chr5_3:12443917-12443936 Msa0799290:CDS 15.0%
!!! TTATTGTAATGCTAAATTTT+AGG - chr5_3:12445358-12445377 Msa0799290:intron 15.0%
!!! TATTGTAATGCTAAATTTTA+GGG - chr5_3:12445359-12445378 Msa0799290:intron 15.0%
!! TAAAATTAAATTTAGTTGCA+GGG + chr5_3:12446988-12447007 None:intergenic 15.0%
!! TTTACTCATAACATAAACAT+AGG - chr5_3:12443447-12443466 Msa0799290:three_prime_UTR 20.0%
!! TTTGTAAAATTGTGTTTGTT+AGG - chr5_3:12444088-12444107 Msa0799290:CDS 20.0%
!!! TTGTAAAATTGTGTTTGTTA+GGG - chr5_3:12444089-12444108 Msa0799290:CDS 20.0%
!! GATATTAGCATACAAAAAAT+TGG - chr5_3:12444197-12444216 Msa0799290:CDS 20.0%
!!! TTTTCATTCTTTTTTCTCAA+AGG - chr5_3:12444933-12444952 Msa0799290:intron 20.0%
!!! TTTCATTCTTTTTTCTCAAA+GGG - chr5_3:12444934-12444953 Msa0799290:intron 20.0%
!! TTATGAATTTAGATCTTGAA+CGG - chr5_3:12445003-12445022 Msa0799290:intron 20.0%
!!! TTTTATTGCACTAAATATGT+AGG - chr5_3:12445029-12445048 Msa0799290:intron 20.0%
!! TTTATTGCACTAAATATGTA+GGG - chr5_3:12445030-12445049 Msa0799290:intron 20.0%
!! ACTTTCTCAAATTAATTACT+TGG - chr5_3:12445108-12445127 Msa0799290:intron 20.0%
!!! TTTAAGCAATTTTCAAGTAT+TGG + chr5_3:12445413-12445432 None:intergenic 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG + chr5_3:12445550-12445569 None:intergenic 20.0%
!! TACCAATTTCAAAATCATTA+AGG + chr5_3:12445856-12445875 None:intergenic 20.0%
!!! AACTGATGATAAATTTTGAT+AGG - chr5_3:12446116-12446135 Msa0799290:CDS 20.0%
!! TGGAAAAGATATATTTACTA+TGG - chr5_3:12446714-12446733 Msa0799290:intron 20.0%
!! CTAAAATTAAATTTAGTTGC+AGG + chr5_3:12446989-12447008 None:intergenic 20.0%
! AAAAACAAGAAGAACCAAAT+CGG + chr5_3:12443630-12443649 None:intergenic 25.0%
!!! TTGGTTCTTCTTGTTTTTTA+TGG - chr5_3:12443632-12443651 Msa0799290:three_prime_UTR 25.0%
!!! TTTTAGAAGCTTCATTATCA+AGG - chr5_3:12443662-12443681 Msa0799290:exon 25.0%
! ATTTATGAATGTGAGCAAAT+AGG - chr5_3:12444027-12444046 Msa0799290:CDS 25.0%
! TTTATGAATGTGAGCAAATA+GGG - chr5_3:12444028-12444047 Msa0799290:CDS 25.0%
!!! ATGTGGGTTTTTTTGTTTTT+AGG - chr5_3:12444064-12444083 Msa0799290:CDS 25.0%
!!! TGTTTTTATAAACTTCAGAG+TGG - chr5_3:12444248-12444267 Msa0799290:CDS 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG - chr5_3:12444700-12444719 Msa0799290:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG - chr5_3:12444781-12444800 Msa0799290:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG - chr5_3:12444977-12444996 Msa0799290:intron 25.0%
! TTAATTACACGTGCATTATT+TGG - chr5_3:12445271-12445290 Msa0799290:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG - chr5_3:12445371-12445390 Msa0799290:intron 25.0%
! CAAGTAATTTCTTAACTATG+AGG + chr5_3:12445457-12445476 None:intergenic 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG - chr5_3:12445537-12445556 Msa0799290:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG + chr5_3:12445551-12445570 None:intergenic 25.0%
!!! TAGATGTTCTTTTTCATTGT+TGG - chr5_3:12445715-12445734 Msa0799290:intron 25.0%
!!! TTTTTAACTTCTGACTTGAA+TGG - chr5_3:12445761-12445780 Msa0799290:intron 25.0%
!!! TTTTAACTTCTGACTTGAAT+GGG - chr5_3:12445762-12445781 Msa0799290:intron 25.0%
! AATCATTAAGGTGAATTGAA+CGG + chr5_3:12445844-12445863 None:intergenic 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG - chr5_3:12445851-12445870 Msa0799290:CDS 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG - chr5_3:12445894-12445913 Msa0799290:CDS 25.0%
!! AGATAAAATAAAGAGTGTGT+TGG + chr5_3:12446093-12446112 None:intergenic 25.0%
!! TTTTGATAGGTCTAACTTTT+TGG - chr5_3:12446129-12446148 Msa0799290:exon 25.0%
!! TTTGATAGGTCTAACTTTTT+GGG - chr5_3:12446130-12446149 Msa0799290:exon 25.0%
! ATATAGATGAAAAAAACCAG+CGG + chr5_3:12446836-12446855 None:intergenic 25.0%
! TTTATGTTAGTTGTTGTATC+TGG - chr5_3:12446935-12446954 Msa0799290:five_prime_UTR 25.0%
CTCATAACATAAACATAGGT+TGG - chr5_3:12443451-12443470 Msa0799290:three_prime_UTR 30.0%
!!! CTTCTTGTTTTTTATGGATC+CGG - chr5_3:12443638-12443657 Msa0799290:three_prime_UTR 30.0%
!!! TTCTTGTTTTTTATGGATCC+GGG - chr5_3:12443639-12443658 Msa0799290:three_prime_UTR 30.0%
!! ATAATGAAGCTTCTAAAACC+CGG + chr5_3:12443660-12443679 None:intergenic 30.0%
!!! CTGTTGATGATGATGTTTTT+AGG - chr5_3:12443894-12443913 Msa0799290:CDS 30.0%
! TGAAGTATTTGCAAAAAGCT+AGG - chr5_3:12443972-12443991 Msa0799290:CDS 30.0%
ATATCAAGTAGCAATTCAGA+TGG + chr5_3:12444519-12444538 None:intergenic 30.0%
! TGCTACTTGATATAATTCGA+AGG - chr5_3:12444526-12444545 Msa0799290:CDS 30.0%
GCTACTTGATATAATTCGAA+GGG - chr5_3:12444527-12444546 Msa0799290:CDS 30.0%
AACAACAATTACGCCAAAAA+AGG + chr5_3:12444716-12444735 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG + chr5_3:12444752-12444771 None:intergenic 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG - chr5_3:12444782-12444801 Msa0799290:intron 30.0%
TCTGCATATCTATTGTACTA+TGG - chr5_3:12444854-12444873 Msa0799290:intron 30.0%
ATATCTATTGTACTATGGAC+TGG - chr5_3:12444859-12444878 Msa0799290:intron 30.0%
!! GATGTTGATTCGACAAAAAA+AGG - chr5_3:12445480-12445499 Msa0799290:intron 30.0%
! TTGATTCGACAAAAAAAGGA+AGG - chr5_3:12445484-12445503 Msa0799290:intron 30.0%
TGATTCGACAAAAAAAGGAA+GGG - chr5_3:12445485-12445504 Msa0799290:intron 30.0%
CTCATTTGTTTCCCTTTATT+TGG - chr5_3:12445536-12445555 Msa0799290:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG - chr5_3:12445640-12445659 Msa0799290:CDS 30.0%
! TTTGGAGTCATAGTATGAAA+TGG - chr5_3:12445658-12445677 Msa0799290:CDS 30.0%
TTGGAGTCATAGTATGAAAT+GGG - chr5_3:12445659-12445678 Msa0799290:CDS 30.0%
TATTAGCTGCCAAAAAGATA+AGG - chr5_3:12445938-12445957 Msa0799290:CDS 30.0%
GTGTTGGAAATTTGAAAAGT+GGG + chr5_3:12446077-12446096 None:intergenic 30.0%
TGTGTTGGAAATTTGAAAAG+TGG + chr5_3:12446078-12446097 None:intergenic 30.0%
ATGATGCAATTCATTCTTCT+CGG + chr5_3:12446325-12446344 None:intergenic 30.0%
GTAATTTGAGGAAAAGATGT+AGG + chr5_3:12446397-12446416 None:intergenic 30.0%
AAATGCTCATCAGTAATTTG+AGG + chr5_3:12446409-12446428 None:intergenic 30.0%
GAATTGCTTAAATCTCCAAT+TGG + chr5_3:12446469-12446488 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG - chr5_3:12446621-12446640 Msa0799290:intron 30.0%
GAAATACAAGGCAACTATAT+AGG + chr5_3:12447041-12447060 None:intergenic 30.0%
TAAAGCTGTTAAGGAGATGA+AGG + chr5_3:12443576-12443595 None:intergenic 35.0%
!! TTAGCTGATTTGTTCGTTTG+AGG - chr5_3:12443710-12443729 Msa0799290:CDS 35.0%
! TGTTCGTTTGAGGATTTTTC+AGG - chr5_3:12443720-12443739 Msa0799290:CDS 35.0%
!!! TTTGAGGATTTTTCAGGTGT+TGG - chr5_3:12443726-12443745 Msa0799290:CDS 35.0%
!!! TTGAGGATTTTTCAGGTGTT+GGG - chr5_3:12443727-12443746 Msa0799290:CDS 35.0%
!! TTTGTAGATCGTTTTGACCA+TGG - chr5_3:12443814-12443833 Msa0799290:CDS 35.0%
ACAACTATTTACACACACCA+TGG + chr5_3:12443834-12443853 None:intergenic 35.0%
! AAAGCTAGGTTTTTGTGATG+TGG - chr5_3:12443986-12444005 Msa0799290:CDS 35.0%
! AAGCTAGGTTTTTGTGATGT+GGG - chr5_3:12443987-12444006 Msa0799290:CDS 35.0%
!!! AGGGTTTTTTGATGTGAATG+TGG - chr5_3:12444047-12444066 Msa0799290:CDS 35.0%
!!! GGGTTTTTTGATGTGAATGT+GGG - chr5_3:12444048-12444067 Msa0799290:CDS 35.0%
CAAAGTACAAACAGATACAC+TGG + chr5_3:12444149-12444168 None:intergenic 35.0%
! TTCAGAGTGGAGAATGATTT+TGG - chr5_3:12444261-12444280 Msa0799290:CDS 35.0%
AGTGATGTTAGAGTGATATC+AGG + chr5_3:12444462-12444481 None:intergenic 35.0%
TTCTGTGTGTAAATCATGGA+GGG - chr5_3:12444602-12444621 Msa0799290:intron 35.0%
CTGAACAATCTCTTGTGTAA+CGG + chr5_3:12444628-12444647 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG - chr5_3:12444674-12444693 Msa0799290:intron 35.0%
ATCACCTGCTTTAACGAAAT+AGG + chr5_3:12444681-12444700 None:intergenic 35.0%
! TTTTCGCTGCTTATCCATTT+TGG - chr5_3:12444735-12444754 Msa0799290:intron 35.0%
CACATTGAAGCAAACTTACA+TGG + chr5_3:12444887-12444906 None:intergenic 35.0%
! CATGTAAGTTTGCTTCAATG+TGG - chr5_3:12444885-12444904 Msa0799290:intron 35.0%
!! TTTCAAGTATTGGTCTGATG+CGG + chr5_3:12445403-12445422 None:intergenic 35.0%
! GAAACAAATGAGTTGAGTTG+AGG + chr5_3:12445528-12445547 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG - chr5_3:12445554-12445573 Msa0799290:intron 35.0%
GAGGAAAACAAAGCACAAAT+CGG + chr5_3:12445822-12445841 None:intergenic 35.0%
CACAGACTTCATCATATCTT+TGG - chr5_3:12445972-12445991 Msa0799290:CDS 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG - chr5_3:12446032-12446051 Msa0799290:CDS 35.0%
CTAACAATATAGTTACACGC+TGG + chr5_3:12446262-12446281 None:intergenic 35.0%
! CCAATTGGATCTTTACCTTT+TGG + chr5_3:12446454-12446473 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG - chr5_3:12446451-12446470 Msa0799290:intron 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG - chr5_3:12446694-12446713 Msa0799290:intron 35.0%
TTATGCACAATTCTTCAGCA+TGG - chr5_3:12446875-12446894 Msa0799290:five_prime_UTR 35.0%
TTGTATTTCTCACCACACAT+GGG - chr5_3:12447052-12447071 Msa0799290:five_prime_UTR 35.0%
! TGAAAAATGGATTCCGCAAC+CGG + chr5_3:12443499-12443518 None:intergenic 40.0%
!! GTTGCGGAATCCATTTTTCA+CGG - chr5_3:12443499-12443518 Msa0799290:three_prime_UTR 40.0%
!!! GGAGGGTTTTAAAGCTGTTA+AGG + chr5_3:12443585-12443604 None:intergenic 40.0%
GAAACAGAGGCAGAAAAACA+CGG + chr5_3:12443606-12443625 None:intergenic 40.0%
GATGTTTGCAGTTATTGTGC+TGG - chr5_3:12444293-12444312 Msa0799290:CDS 40.0%
! TGTCGTTGAGAAGCATAGTA+CGG - chr5_3:12444343-12444362 Msa0799290:intron 40.0%
ATCACTTGAACCTATTCAGC+AGG - chr5_3:12444476-12444495 Msa0799290:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG - chr5_3:12444477-12444496 Msa0799290:CDS 40.0%
GTGCTTCTGTGTGTAAATCA+TGG - chr5_3:12444598-12444617 Msa0799290:intron 40.0%
CTTCTGTGTGTAAATCATGG+AGG - chr5_3:12444601-12444620 Msa0799290:intron 40.0%
GTTTGAACACGTGCATTACA+TGG - chr5_3:12445132-12445151 Msa0799290:intron 40.0%
TTCGACAAAAAAAGGAAGGG+AGG - chr5_3:12445488-12445507 Msa0799290:intron 40.0%
GACTTGAATGGGACAGAAAT+TGG - chr5_3:12445773-12445792 Msa0799290:intron 40.0%
AACAAAGCACAAATCGGTTG+AGG + chr5_3:12445816-12445835 None:intergenic 40.0%
CATTAAGGTGAATTGAACGG+AGG + chr5_3:12445841-12445860 None:intergenic 40.0%
TAGCTGCCAAAAAGATAAGG+AGG - chr5_3:12445941-12445960 Msa0799290:CDS 40.0%
AGCTGCCAAAAAGATAAGGA+GGG - chr5_3:12445942-12445961 Msa0799290:CDS 40.0%
AAAAAGATAAGGAGGGCAAC+CGG - chr5_3:12445949-12445968 Msa0799290:CDS 40.0%
AGATATGATGAAGTCTGTGC+CGG + chr5_3:12445971-12445990 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG + chr5_3:12446019-12446038 None:intergenic 40.0%
ATGCGTATGTTGGAAAACTC+AGG - chr5_3:12446022-12446041 Msa0799290:CDS 40.0%
GCTGTCATATATGGTGAACT+TGG + chr5_3:12446158-12446177 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG - chr5_3:12446194-12446213 Msa0799290:intron 40.0%
AACATTCAGCTCATAGGCAA+TGG + chr5_3:12446287-12446306 None:intergenic 40.0%
TGAGGAAAAGATGTAGGAGT+TGG + chr5_3:12446391-12446410 None:intergenic 40.0%
TTGAGTACCAGAGACTCAAA+TGG + chr5_3:12446526-12446545 None:intergenic 40.0%
TCAAAAACAAGTCTCCCAGA+TGG - chr5_3:12446542-12446561 Msa0799290:intron 40.0%
ATGCTGGTGCCTAAATTTCA+AGG - chr5_3:12446579-12446598 Msa0799290:intron 40.0%
TGCTGGTGCCTAAATTTCAA+GGG - chr5_3:12446580-12446599 Msa0799290:intron 40.0%
TAACACGGCCCTTGAAATTT+AGG + chr5_3:12446591-12446610 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG + chr5_3:12446606-12446625 None:intergenic 40.0%
GCAGGAGAAACATTATGAGA+TGG + chr5_3:12446658-12446677 None:intergenic 40.0%
GAGAAGGTTATCTTGCAGTT+TGG - chr5_3:12446685-12446704 Msa0799290:intron 40.0%
AATACTAACGACCGATTGTC+AGG + chr5_3:12446911-12446930 None:intergenic 40.0%
AGGGCTATAGAATGACATAC+AGG + chr5_3:12446969-12446988 None:intergenic 40.0%
CATGTGTGGTGAGAAATACA+AGG + chr5_3:12447053-12447072 None:intergenic 40.0%
CTTGTATTTCTCACCACACA+TGG - chr5_3:12447051-12447070 Msa0799290:five_prime_UTR 40.0%
!! GAAGGAGGCGTTGAAAATTC+CGG + chr5_3:12443558-12443577 None:intergenic 45.0%
AGCTGTTAAGGAGATGAAGG+AGG + chr5_3:12443573-12443592 None:intergenic 45.0%
GAACCAAATCGGAGAAACAG+AGG + chr5_3:12443619-12443638 None:intergenic 45.0%
! GTCGTTGAGAAGCATAGTAC+GGG - chr5_3:12444344-12444363 Msa0799290:intron 45.0%
AAGCATAGTACGGGAACTCA+AGG - chr5_3:12444353-12444372 Msa0799290:intron 45.0%
AACTCAAGGAGATGAGGGAT+GGG - chr5_3:12444367-12444386 Msa0799290:intron 45.0%
! ATGGGATTGGTAATACGTCG+AGG - chr5_3:12444385-12444404 Msa0799290:intron 45.0%
! ATTGGTAATACGTCGAGGAG+AGG - chr5_3:12444390-12444409 Msa0799290:intron 45.0%
AACCTATTCAGCAGGGACAA+TGG - chr5_3:12444484-12444503 Msa0799290:CDS 45.0%
ACCTATTCAGCAGGGACAAT+GGG - chr5_3:12444485-12444504 Msa0799290:CDS 45.0%
TAGAAGAGACCGAGACTTCT+TGG - chr5_3:12444550-12444569 Msa0799290:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG + chr5_3:12444654-12444673 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG + chr5_3:12444655-12444674 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG + chr5_3:12444821-12444840 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG - chr5_3:12444820-12444839 Msa0799290:intron 45.0%
GACAAAAAAAGGAAGGGAGG+CGG - chr5_3:12445491-12445510 Msa0799290:intron 45.0%
ACAAAAAAAGGAAGGGAGGC+GGG - chr5_3:12445492-12445511 Msa0799290:intron 45.0%
CTAAAATCCGACAGCCTCTA+GGG + chr5_3:12445584-12445603 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG + chr5_3:12445585-12445604 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG - chr5_3:12445785-12445804 Msa0799290:intron 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG + chr5_3:12445950-12445969 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG + chr5_3:12446167-12446186 None:intergenic 45.0%
AATGAAATCTCCTGCTGGAC+CGG + chr5_3:12446216-12446235 None:intergenic 45.0%
CCTAGAATGAAATCTCCTGC+TGG + chr5_3:12446221-12446240 None:intergenic 45.0%
CCAGCAGGAGATTTCATTCT+AGG - chr5_3:12446218-12446237 Msa0799290:intron 45.0%
CAGGAGATTTCATTCTAGGC+AGG - chr5_3:12446222-12446241 Msa0799290:intron 45.0%
TAGTTACACGCTGGAACTCT+TGG + chr5_3:12446253-12446272 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG - chr5_3:12446299-12446318 Msa0799290:intron 45.0%
TATACCTGTCTCAGCTGTTC+AGG - chr5_3:12446351-12446370 Msa0799290:intron 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG + chr5_3:12446448-12446467 None:intergenic 45.0%
ATAACCTTCTCTTGCTCTGC+AGG + chr5_3:12446676-12446695 None:intergenic 45.0%
TCAAGCATATCGCAAAGGCT+TGG + chr5_3:12446765-12446784 None:intergenic 45.0%
CATGGATCTCATTCACATGC+TGG + chr5_3:12446805-12446824 None:intergenic 45.0%
CAGCATGTGAATGAGATCCA+TGG - chr5_3:12446803-12446822 Msa0799290:five_prime_UTR 45.0%
!! AAACCAGCGGACTATAACCA+TGG + chr5_3:12446823-12446842 None:intergenic 45.0%
ACAACAGCAATACCCATGTG+TGG + chr5_3:12447067-12447086 None:intergenic 45.0%
CGGAATGGTGTGGCATGAAT+CGG + chr5_3:12443479-12443498 None:intergenic 50.0%
CGATTCATGCCACACCATTC+CGG - chr5_3:12443477-12443496 Msa0799290:three_prime_UTR 50.0%
! AATGGATTCCGCAACCGGAA+TGG + chr5_3:12443494-12443513 None:intergenic 50.0%
!! GCGGAATCCATTTTTCACGG+CGG - chr5_3:12443502-12443521 Msa0799290:three_prime_UTR 50.0%
!! TCCATTTTTCACGGCGGTGT+TGG - chr5_3:12443508-12443527 Msa0799290:three_prime_UTR 50.0%
ACCAACACCGCCGTGAAAAA+TGG + chr5_3:12443512-12443531 None:intergenic 50.0%
!! ATTTTTCACGGCGGTGTTGG+TGG - chr5_3:12443511-12443530 Msa0799290:three_prime_UTR 50.0%
CAGAGGCAGAAAAACACGGA+GGG + chr5_3:12443602-12443621 None:intergenic 50.0%
ACAGAGGCAGAAAAACACGG+AGG + chr5_3:12443603-12443622 None:intergenic 50.0%
! CTGCCTCTGTTTCTCCGATT+TGG - chr5_3:12443613-12443632 Msa0799290:three_prime_UTR 50.0%
TACGGGAACTCAAGGAGATG+AGG - chr5_3:12444361-12444380 Msa0799290:intron 50.0%
ACGGGAACTCAAGGAGATGA+GGG - chr5_3:12444362-12444381 Msa0799290:intron 50.0%
GAACTCAAGGAGATGAGGGA+TGG - chr5_3:12444366-12444385 Msa0799290:intron 50.0%
AAGGAGATGAGGGATGGGAT+TGG - chr5_3:12444372-12444391 Msa0799290:intron 50.0%
TAATACGTCGAGGAGAGGTG+TGG - chr5_3:12444395-12444414 Msa0799290:intron 50.0%
CAAGTAGGCATTCACAGCGT+CGG - chr5_3:12444418-12444437 Msa0799290:intron 50.0%
CACTGTATCGGAGAATCACG+AGG + chr5_3:12444809-12444828 None:intergenic 50.0%
CTCCGATACAGTGCTTCATC+AGG - chr5_3:12444816-12444835 Msa0799290:intron 50.0%
CGATACAGTGCTTCATCAGG+AGG - chr5_3:12444819-12444838 Msa0799290:intron 50.0%
ATCGGTTGAGGTGTATCCAC+AGG + chr5_3:12445804-12445823 None:intergenic 50.0%
CGTTCCAGCAATGCGTATGT+TGG - chr5_3:12446012-12446031 Msa0799290:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG - chr5_3:12446169-12446188 Msa0799290:intron 50.0%
GCGGAGAACATTCAGCTCAT+AGG + chr5_3:12446293-12446312 None:intergenic 50.0%
CTGAATGTTCTCCGCACTAG+AGG - chr5_3:12446298-12446317 Msa0799290:intron 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG - chr5_3:12446356-12446375 Msa0799290:intron 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG - chr5_3:12446357-12446376 Msa0799290:intron 50.0%
TGCAGCTGTTCATGCCATCT+GGG + chr5_3:12446559-12446578 None:intergenic 50.0%
TTGCAGCTGTTCATGCCATC+TGG + chr5_3:12446560-12446579 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG - chr5_3:12446594-12446613 Msa0799290:intron 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG - chr5_3:12446669-12446688 Msa0799290:intron 50.0%
GGAAGGCAGAGAGTGGATAA+CGG + chr5_3:12446744-12446763 None:intergenic 50.0%
GCATATCGCAAAGGCTTGGA+AGG + chr5_3:12446761-12446780 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG + chr5_3:12446770-12446789 None:intergenic 50.0%
GATCCATGGTTATAGTCCGC+TGG - chr5_3:12446817-12446836 Msa0799290:five_prime_UTR 50.0%
GTGAGATGCAGCCTGACAAT+CGG - chr5_3:12446897-12446916 Msa0799290:five_prime_UTR 50.0%
ATGCCACACCATTCCGGTTG+CGG - chr5_3:12443483-12443502 Msa0799290:three_prime_UTR 55.0%
ATTCCGCAACCGGAATGGTG+TGG + chr5_3:12443489-12443508 None:intergenic 55.0%
TTCCGGCGAAAACCCGAAGA+GGG + chr5_3:12443541-12443560 None:intergenic 55.0%
ATTCCGGCGAAAACCCGAAG+AGG + chr5_3:12443542-12443561 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG + chr5_3:12444489-12444508 None:intergenic 55.0%
ACGTGCAGGCCAAGAAGTCT+CGG + chr5_3:12444562-12444581 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG + chr5_3:12444576-12444595 None:intergenic 55.0%
GTTCAGACTCCCGAAGAGTG+TGG - chr5_3:12444642-12444661 Msa0799290:intron 55.0%
ATCGGAGAATCACGAGGACC+CGG + chr5_3:12444803-12444822 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG - chr5_3:12445567-12445586 Msa0799290:intron 55.0%
TGTATTCCAGCTCCGTGTGG+AGG + chr5_3:12446184-12446203 None:intergenic 55.0%
GGTTGTATTCCAGCTCCGTG+TGG + chr5_3:12446187-12446206 None:intergenic 55.0%
AACCAAATAGCCGGTCCAGC+AGG - chr5_3:12446203-12446222 Msa0799290:intron 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG + chr5_3:12446312-12446331 None:intergenic 55.0%
CCTTCCTGAACAGCTGAGAC+AGG + chr5_3:12446358-12446377 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG - chr5_3:12446355-12446374 Msa0799290:intron 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG - chr5_3:12446358-12446377 Msa0799290:intron 55.0%
TTCAACCCTCGCAGAGTTGC+CGG - chr5_3:12446486-12446505 Msa0799290:intron 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG - chr5_3:12446500-12446519 Msa0799290:intron 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG + chr5_3:12446508-12446527 None:intergenic 55.0%
CCAGAGACTCAAATGGCCCT+TGG + chr5_3:12446519-12446538 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG - chr5_3:12446516-12446535 Msa0799290:intron 55.0%
GGCATGAACAGCTGCAATGC+TGG - chr5_3:12446563-12446582 Msa0799290:intron 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG + chr5_3:12446751-12446770 None:intergenic 55.0%
!! TTTCACGGCGGTGTTGGTGG+CGG - chr5_3:12443514-12443533 Msa0799290:three_prime_UTR 60.0%
!! TGTTGGTGGCGGACCCTCTT+CGG - chr5_3:12443525-12443544 Msa0799290:three_prime_UTR 60.0%
!! GACCCTCTTCGGGTTTTCGC+CGG - chr5_3:12443536-12443555 Msa0799290:three_prime_UTR 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG - chr5_3:12444403-12444422 Msa0799290:intron 60.0%
AAGGAAGGGAGGCGGGAGTA+TGG - chr5_3:12445499-12445518 Msa0799290:intron 60.0%
! AGGAAGGGAGGCGGGAGTAT+GGG - chr5_3:12445500-12445519 Msa0799290:intron 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG + chr5_3:12445576-12445595 None:intergenic 60.0%
CGGTTCACCCTAGAGGCTGT+CGG - chr5_3:12445574-12445593 Msa0799290:intron 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG + chr5_3:12446180-12446199 None:intergenic 60.0%
CTCCTGCTGGACCGGCTATT+TGG + chr5_3:12446208-12446227 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG - chr5_3:12446436-12446455 Msa0799290:intron 60.0%
CTGAACCGGCAACTCTGCGA+GGG + chr5_3:12446494-12446513 None:intergenic 60.0%
TCTGAACCGGCAACTCTGCG+AGG + chr5_3:12446495-12446514 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG - chr5_3:12446499-12446518 Msa0799290:intron 60.0%
!! GTTGGTGGCGGACCCTCTTC+GGG - chr5_3:12443526-12443545 Msa0799290:three_prime_UTR 65.0%
AGCCAACCTCCACACGGAGC+TGG - chr5_3:12446175-12446194 Msa0799290:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 12443399 12447089 12443399 ID=Msa0799290;Name=Msa0799290
chr5_3 mRNA 12443399 12447089 12443399 ID=Msa0799290-mRNA-1;Parent=Msa0799290;Name=Msa0799290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=381|1|1|1|0.75|0.6|5|273|416
chr5_3 exon 12443399 12444350 12443399 ID=Msa0799290-mRNA-1:exon:5120;Parent=Msa0799290-mRNA-1
chr5_3 exon 12444445 12444574 12444445 ID=Msa0799290-mRNA-1:exon:5119;Parent=Msa0799290-mRNA-1
chr5_3 exon 12445601 12445688 12445601 ID=Msa0799290-mRNA-1:exon:5118;Parent=Msa0799290-mRNA-1
chr5_3 exon 12445793 12446184 12445793 ID=Msa0799290-mRNA-1:exon:5117;Parent=Msa0799290-mRNA-1
chr5_3 exon 12446747 12447089 12446747 ID=Msa0799290-mRNA-1:exon:5116;Parent=Msa0799290-mRNA-1
chr5_3 five_prime_UTR 12446747 12447089 12446747 ID=Msa0799290-mRNA-1:five_prime_utr;Parent=Msa0799290-mRNA-1
chr5_3 five_prime_UTR 12446147 12446184 12446147 ID=Msa0799290-mRNA-1:five_prime_utr;Parent=Msa0799290-mRNA-1
chr5_3 CDS 12445793 12446146 12445793 ID=Msa0799290-mRNA-1:cds;Parent=Msa0799290-mRNA-1
chr5_3 CDS 12445601 12445688 12445601 ID=Msa0799290-mRNA-1:cds;Parent=Msa0799290-mRNA-1
chr5_3 CDS 12444445 12444574 12444445 ID=Msa0799290-mRNA-1:cds;Parent=Msa0799290-mRNA-1
chr5_3 CDS 12443672 12444350 12443672 ID=Msa0799290-mRNA-1:cds;Parent=Msa0799290-mRNA-1
chr5_3 three_prime_UTR 12443399 12443671 12443399 ID=Msa0799290-mRNA-1:three_prime_utr;Parent=Msa0799290-mRNA-1
Gene Sequence

>Msa0799290

ATGTCGTTGAGAAGCATAGTACGGGAACTCAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAGCATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>Msa0799290

MSLRSIVRELKEMRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*