AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837510 MtrunA17_Chr5g0404321 97.596 416 10 0 1 416 1 416 0.0 841
Msa0837510 MtrunA17_Chr8g0373001 74.519 416 102 2 1 416 1 412 0.0 649
Msa0837510 MtrunA17_Chr1g0155301 62.903 434 131 8 1 416 1 422 0.0 527
Msa0837510 MtrunA17_Chr8g0373361 58.111 413 151 9 1 409 11 405 1.97e-159 455
Msa0837510 MtrunA17_Chr2g0278511 55.069 434 170 12 1 416 1 427 1.07e-153 441
Msa0837510 MtrunA17_Chr2g0286441 57.182 369 151 3 48 416 32 393 1.57e-149 429
Msa0837510 MtrunA17_Chr1g0201891 53.182 440 173 12 1 416 1 431 6.26e-149 429
Msa0837510 MtrunA17_Chr1g0196071 52.871 418 179 7 1 416 1 402 3.18e-146 421
Msa0837510 MtrunA17_Chr8g0373331 51.090 413 129 9 1 407 1 346 8.66e-132 382
Msa0837510 MtrunA17_Chr2g0315641 50.829 362 146 2 55 416 42 371 2.35e-127 372
Msa0837510 MtrunA17_Chr2g0315651 44.772 373 167 6 48 416 30 367 4.20e-101 305
Msa0837510 MtrunA17_Chr8g0373351 45.663 392 95 11 37 413 3 291 9.75e-95 286
Msa0837510 MtrunA17_Chr1g0156151 51.982 227 101 2 1 223 1 223 3.32e-76 236
Msa0837510 MtrunA17_Chr8g0373341 53.333 225 59 6 1 207 1 197 1.16e-55 186
Msa0837510 MtrunA17_Chr8g0373341 55.556 117 51 1 291 406 204 320 4.43e-34 129
Msa0837510 MtrunA17_Chr3g0091401 71.134 97 22 1 98 194 9 99 2.84e-37 131
Msa0837510 MtrunA17_Chr2g0334041 36.697 109 54 4 313 415 260 359 1.55e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837510 AT2G18280.2 63.876 418 124 7 1 416 1 393 0.0 518
Msa0837510 AT2G18280.1 63.876 418 124 7 1 416 1 393 0.0 518
Msa0837510 AT1G47270.3 58.333 396 131 9 32 416 16 388 9.58e-155 442
Msa0837510 AT1G47270.1 58.333 396 131 9 32 416 41 413 1.23e-154 443
Msa0837510 AT1G47270.2 58.333 396 131 9 32 416 40 412 1.40e-154 443
Msa0837510 AT1G25280.1 53.795 448 172 9 1 416 1 445 1.42e-153 442
Msa0837510 AT2G47900.3 53.589 418 181 5 1 416 1 407 6.76e-152 436
Msa0837510 AT2G47900.2 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0837510 AT2G47900.1 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0837510 AT1G76900.2 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0837510 AT1G76900.1 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0837510 AT1G76900.3 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0837510 AT1G43640.1 50.000 442 182 12 1 416 1 429 1.51e-142 413
Msa0837510 AT5G18680.1 53.887 373 147 7 51 416 35 389 2.56e-130 380
Msa0837510 AT1G43640.2 52.151 372 147 9 67 416 1 363 1.84e-128 375
Msa0837510 AT3G06380.1 51.671 389 168 7 31 416 9 380 4.05e-128 375
Msa0837510 AT1G53320.1 51.934 362 148 3 55 416 44 379 1.60e-124 365
Msa0837510 AT5G18680.2 54.369 309 117 6 114 416 7 297 1.69e-105 314
Msa0837510 AT3G06380.2 54.153 301 119 6 118 416 5 288 2.10e-101 303
Msa0837510 AT1G25280.3 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0837510 AT1G25280.2 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0837510 AT1G61940.2 50.575 87 43 0 58 144 1 87 4.21e-26 106
Msa0837510 AT1G61940.1 54.098 61 28 0 58 118 1 61 6.01e-16 77.4

Find 146 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 5_4:+11499542 None:intergenic
TTTATGTTAGTTGTTGTATC+TGG 0.216186 5_4:-11498812 Msa0837510:three_prime_UTR
CCAATTGGATCTTTACCTTT+TGG 0.222216 5_4:+11499296 None:intergenic
TAACACGGCCCTTGAAATTT+AGG 0.254077 5_4:+11499159 None:intergenic
CTGCCTCTGTTTCTCCGATT+TGG 0.257203 5_4:-11502135 Msa0837510:five_prime_UTR
CCAGCAGGAGATTTCATTCT+AGG 0.267212 5_4:-11499529 Msa0837510:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 5_4:-11499033 Msa0837510:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 5_4:-11499775 Msa0837510:CDS
TGTTGGTGGCGGACCCTCTT+CGG 0.290583 5_4:-11502223 Msa0837510:five_prime_UTR
CTAAAATTAAATTTAGTTGC+AGG 0.290792 5_4:+11498761 None:intergenic
ATCACCTGCTTTAACGAAAT+AGG 0.313540 5_4:+11501070 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 5_4:+11499190 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 5_4:-11499053 Msa0837510:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 5_4:+11501096 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 5_4:-11499261 Msa0837510:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 5_4:+11501097 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 5_4:-11499062 Msa0837510:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 5_4:-11499396 Msa0837510:CDS
GTTGGTGGCGGACCCTCTTC+GGG 0.370624 5_4:-11502222 Msa0837510:five_prime_UTR
TAGAAGAGACCGAGACTTCT+TGG 0.372683 5_4:-11501198 Msa0837510:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 5_4:-11500894 Msa0837510:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 5_4:+11499425 None:intergenic
TTAGCTGATTTGTTCGTTTG+AGG 0.395892 5_4:-11502038 Msa0837510:five_prime_UTR
CGATTCATGCCACACCATTC+CGG 0.400750 5_4:-11502271 Msa0837510:five_prime_UTR
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 5_4:-11499231 Msa0837510:CDS
TAAAGCTGTTAAGGAGATGA+AGG 0.412584 5_4:+11502175 None:intergenic
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 5_4:+11499074 None:intergenic
GAAATACAAGGCAACTATAT+AGG 0.419249 5_4:+11498709 None:intergenic
CTCATAACATAAACATAGGT+TGG 0.424399 5_4:-11502297 Msa0837510:five_prime_UTR
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 5_4:-11499168 Msa0837510:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 5_4:+11499359 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 5_4:-11501263 Msa0837510:CDS
AATACTAACGACCGATTGTC+AGG 0.447228 5_4:+11498839 None:intergenic
AGTGATGTTAGAGTGATATC+AGG 0.447610 5_4:+11501289 None:intergenic
ATGCCACACCATTCCGGTTG+CGG 0.449706 5_4:-11502265 Msa0837510:five_prime_UTR
GAATTGCTTAAATCTCCAAT+TGG 0.451744 5_4:+11499281 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 5_4:+11499583 None:intergenic
GAAGGAGGCGTTGAAAATTC+CGG 0.455460 5_4:+11502193 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 5_4:-11500932 Msa0837510:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 5_4:+11501262 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 5_4:-11499296 Msa0837510:CDS
TAAAATTAAATTTAGTTGCA+GGG 0.470751 5_4:+11498762 None:intergenic
ATCACTTGAACCTATTCAGC+AGG 0.471218 5_4:-11501272 Msa0837510:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 5_4:+11499497 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 5_4:-11499572 Msa0837510:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 5_4:-11499184 Msa0837510:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 5_4:+11499534 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 5_4:+11499457 None:intergenic
CTTGTATTTCTCACCACACA+TGG 0.480634 5_4:-11498696 Msa0837510:three_prime_UTR
CGGAATGGTGTGGCATGAAT+CGG 0.481540 5_4:+11502272 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 5_4:-11501381 Msa0837510:CDS
CTGAATGTTCTCCGCACTAG+AGG 0.484848 5_4:-11499449 Msa0837510:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 5_4:-11499735 Msa0837510:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 5_4:-11499544 Msa0837510:CDS
TTTACTCATAACATAAACAT+AGG 0.496397 5_4:-11502301 Msa0837510:five_prime_UTR
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 5_4:+11499242 None:intergenic
GTAATTTGAGGAAAAGATGT+AGG 0.503684 5_4:+11499353 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 5_4:-11501382 Msa0837510:CDS
TGCAGCTGTTCATGCCATCT+GGG 0.506117 5_4:+11499191 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 5_4:-11501074 Msa0837510:intron
AAACCAGCGGACTATAACCA+TGG 0.507514 5_4:+11498927 None:intergenic
TTTCACGGCGGTGTTGGTGG+CGG 0.510082 5_4:-11502234 Msa0837510:five_prime_UTR
GATGTTTGCAGTTATTGTGC+TGG 0.512169 5_4:-11501455 Msa0837510:intron
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 5_4:+11499392 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 5_4:-11499248 Msa0837510:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 5_4:-11499525 Msa0837510:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 5_4:+11498945 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 5_4:+11499224 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 5_4:-11499126 Msa0837510:CDS
GTGAGATGCAGCCTGACAAT+CGG 0.535093 5_4:-11498850 Msa0837510:three_prime_UTR
GAAACGACAACAGCACGTGC+AGG 0.536741 5_4:+11501175 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 5_4:+11499529 None:intergenic
AAATGCTCATCAGTAATTTG+AGG 0.539761 5_4:+11499341 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 5_4:-11499392 Msa0837510:CDS
TGTCGTTGAGAAGCATAGTA+CGG 0.541748 5_4:-11501405 Msa0837510:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 5_4:-11499391 Msa0837510:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 5_4:-11501345 Msa0837510:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 5_4:+11498989 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 5_4:+11499592 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 5_4:-11501150 Msa0837510:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 5_4:+11499231 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 5_4:+11499570 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 5_4:-11501264 Msa0837510:CDS
ACGTGCAGGCCAAGAAGTCT+CGG 0.554427 5_4:+11501189 None:intergenic
AAGCATAGTACGGGAACTCA+AGG 0.555180 5_4:-11501395 Msa0837510:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 5_4:+11499255 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 5_4:-11501376 Msa0837510:CDS
GATCCATGGTTATAGTCCGC+TGG 0.557580 5_4:-11498930 Msa0837510:three_prime_UTR
TGCTACTTGATATAATTCGA+AGG 0.558581 5_4:-11501222 Msa0837510:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 5_4:-11499390 Msa0837510:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 5_4:+11500948 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 5_4:+11500930 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 5_4:+11499438 None:intergenic
AATGGATTCCGCAACCGGAA+TGG 0.565534 5_4:+11502257 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 5_4:-11499389 Msa0837510:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 5_4:+11499256 None:intergenic
GTCGTTGAGAAGCATAGTAC+GGG 0.569276 5_4:-11501404 Msa0837510:CDS
ATATCTATTGTACTATGGAC+TGG 0.572719 5_4:-11500889 Msa0837510:CDS
AGGGCTATAGAATGACATAC+AGG 0.575549 5_4:+11498781 None:intergenic
GCTACTTGATATAATTCGAA+GGG 0.575810 5_4:-11501221 Msa0837510:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 5_4:-11499311 Msa0837510:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 5_4:+11498985 None:intergenic
AACATTCAGCTCATAGGCAA+TGG 0.582469 5_4:+11499463 None:intergenic
GAACCAAATCGGAGAAACAG+AGG 0.582674 5_4:+11502132 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 5_4:-11499553 Msa0837510:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 5_4:-11500929 Msa0837510:CDS
TTATGCACAATTCTTCAGCA+TGG 0.590762 5_4:-11498872 Msa0837510:three_prime_UTR
TACGGGAACTCAAGGAGATG+AGG 0.591073 5_4:-11501387 Msa0837510:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 5_4:+11501123 None:intergenic
ACGGGAACTCAAGGAGATGA+GGG 0.594362 5_4:-11501386 Msa0837510:CDS
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 5_4:-11499078 Msa0837510:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 5_4:-11499725 Msa0837510:intron
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 5_4:-11499247 Msa0837510:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 5_4:+11499092 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 5_4:-11501330 Msa0837510:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 5_4:+11499006 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 5_4:+11498980 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 5_4:-11499153 Msa0837510:CDS
CAGCATGTGAATGAGATCCA+TGG 0.613020 5_4:-11498944 Msa0837510:exon
ATAATGAAGCTTCTAAAACC+CGG 0.616872 5_4:+11502091 None:intergenic
TGAATGTTCTCCGCACTAGA+GGG 0.618617 5_4:-11499448 Msa0837510:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 5_4:+11498999 None:intergenic
TTCCGGCGAAAACCCGAAGA+GGG 0.630212 5_4:+11502210 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 5_4:-11501146 Msa0837510:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 5_4:+11499779 None:intergenic
TTGTATTTCTCACCACACAT+GGG 0.641041 5_4:-11498695 Msa0837510:three_prime_UTR
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 5_4:-11501106 Msa0837510:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 5_4:-11499167 Msa0837510:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 5_4:+11499144 None:intergenic
ATTCCGGCGAAAACCCGAAG+AGG 0.644601 5_4:+11502209 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 5_4:+11499566 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 5_4:-11501147 Msa0837510:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 5_4:-11501358 Msa0837510:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 5_4:+11501232 None:intergenic
CATGTGTGGTGAGAAATACA+AGG 0.651293 5_4:+11498697 None:intergenic
ATTCCGCAACCGGAATGGTG+TGG 0.659382 5_4:+11502262 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 5_4:+11499563 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 5_4:+11500942 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 5_4:-11500928 Msa0837510:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 5_4:-11501271 Msa0837510:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 5_4:-11501353 Msa0837510:CDS
CTAACAATATAGTTACACGC+TGG 0.696992 5_4:+11499488 None:intergenic
ATGGGATTGGTAATACGTCG+AGG 0.700501 5_4:-11501363 Msa0837510:CDS
TATGACAGCCAACCTCCACA+CGG 0.700970 5_4:-11499578 Msa0837510:CDS
AGCTGTTAAGGAGATGAAGG+AGG 0.704439 5_4:+11502178 None:intergenic
ACAACAGCAATACCCATGTG+TGG 0.714668 5_4:+11498683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTGTTATGTTGT+TGG - chr5_4:11499198-11499217 Msa0837510:CDS 15.0%
!!! TTATTGTAATGCTAAATTTT+AGG - chr5_4:11500640-11500659 Msa0837510:intron 15.0%
!!! TATTGTAATGCTAAATTTTA+GGG - chr5_4:11500641-11500660 Msa0837510:intron 15.0%
!! TAAAATTAAATTTAGTTGCA+GGG + chr5_4:11502270-11502289 None:intergenic 15.0%
!! TTTACTCATAACATAAACAT+AGG - chr5_4:11498728-11498747 Msa0837510:three_prime_UTR 20.0%
!! TTTGTAAAATTGTGTTTGTT+AGG - chr5_4:11499369-11499388 Msa0837510:CDS 20.0%
!!! TTGTAAAATTGTGTTTGTTA+GGG - chr5_4:11499370-11499389 Msa0837510:CDS 20.0%
!! GATATTAGCATACAAAAAAT+TGG - chr5_4:11499478-11499497 Msa0837510:CDS 20.0%
!!! TTTTCATTCTTTTTTCTCAA+AGG - chr5_4:11500214-11500233 Msa0837510:intron 20.0%
!!! TTTCATTCTTTTTTCTCAAA+GGG - chr5_4:11500215-11500234 Msa0837510:intron 20.0%
!! TTATGAATTTAGATCTTGAA+CGG - chr5_4:11500284-11500303 Msa0837510:intron 20.0%
!!! TTTTATTGCACTAAATATGT+AGG - chr5_4:11500310-11500329 Msa0837510:intron 20.0%
!! TTTATTGCACTAAATATGTA+GGG - chr5_4:11500311-11500330 Msa0837510:intron 20.0%
!! ACTTTCTCAAATTAATTACT+TGG - chr5_4:11500389-11500408 Msa0837510:intron 20.0%
!!! TTTAAGCAATTTTCAAGTAT+TGG + chr5_4:11500695-11500714 None:intergenic 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG + chr5_4:11500832-11500851 None:intergenic 20.0%
!! TACCAATTTCAAAATCATTA+AGG + chr5_4:11501138-11501157 None:intergenic 20.0%
!!! AACTGATGATAAATTTTGAT+AGG - chr5_4:11501398-11501417 Msa0837510:CDS 20.0%
!! TGGAAAAGATATATTTACTA+TGG - chr5_4:11501996-11502015 Msa0837510:intron 20.0%
!! CTAAAATTAAATTTAGTTGC+AGG + chr5_4:11502271-11502290 None:intergenic 20.0%
! AAAAACAAGAAGAACCAAAT+CGG + chr5_4:11498911-11498930 None:intergenic 25.0%
!!! TTGGTTCTTCTTGTTTTTTA+TGG - chr5_4:11498913-11498932 Msa0837510:three_prime_UTR 25.0%
!!! TTTTAGAAGCTTCATTATCA+AGG - chr5_4:11498943-11498962 Msa0837510:exon 25.0%
! ATTTATGAATGTGAGCAAAT+AGG - chr5_4:11499308-11499327 Msa0837510:CDS 25.0%
! TTTATGAATGTGAGCAAATA+GGG - chr5_4:11499309-11499328 Msa0837510:CDS 25.0%
!!! ATGTGGGTTTTTTTGTTTTT+AGG - chr5_4:11499345-11499364 Msa0837510:CDS 25.0%
!!! TGTTTTTATAAACTTCAGAG+TGG - chr5_4:11499529-11499548 Msa0837510:CDS 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG - chr5_4:11499981-11500000 Msa0837510:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG - chr5_4:11500062-11500081 Msa0837510:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG - chr5_4:11500258-11500277 Msa0837510:intron 25.0%
! TTAATTACACGTGCATTATT+TGG - chr5_4:11500552-11500571 Msa0837510:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG - chr5_4:11500653-11500672 Msa0837510:intron 25.0%
! CAAGTAATTTCTTAACTATG+AGG + chr5_4:11500739-11500758 None:intergenic 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG - chr5_4:11500819-11500838 Msa0837510:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG + chr5_4:11500833-11500852 None:intergenic 25.0%
!!! TAGATGTTCTTTTTCATTGT+TGG - chr5_4:11500997-11501016 Msa0837510:intron 25.0%
!!! TTTTTAACTTCTGACTTGAA+TGG - chr5_4:11501043-11501062 Msa0837510:intron 25.0%
!!! TTTTAACTTCTGACTTGAAT+GGG - chr5_4:11501044-11501063 Msa0837510:intron 25.0%
! AATCATTAAGGTGAATTGAA+CGG + chr5_4:11501126-11501145 None:intergenic 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG - chr5_4:11501133-11501152 Msa0837510:CDS 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG - chr5_4:11501176-11501195 Msa0837510:CDS 25.0%
!! AGATAAAATAAAGAGTGTGT+TGG + chr5_4:11501375-11501394 None:intergenic 25.0%
!! TTTTGATAGGTCTAACTTTT+TGG - chr5_4:11501411-11501430 Msa0837510:exon 25.0%
!! TTTGATAGGTCTAACTTTTT+GGG - chr5_4:11501412-11501431 Msa0837510:exon 25.0%
! ATATAGATGAAAAAAACCAG+CGG + chr5_4:11502118-11502137 None:intergenic 25.0%
! TTTATGTTAGTTGTTGTATC+TGG - chr5_4:11502217-11502236 Msa0837510:five_prime_UTR 25.0%
CTCATAACATAAACATAGGT+TGG - chr5_4:11498732-11498751 Msa0837510:three_prime_UTR 30.0%
!!! CTTCTTGTTTTTTATGGATC+CGG - chr5_4:11498919-11498938 Msa0837510:three_prime_UTR 30.0%
!!! TTCTTGTTTTTTATGGATCC+GGG - chr5_4:11498920-11498939 Msa0837510:three_prime_UTR 30.0%
!! ATAATGAAGCTTCTAAAACC+CGG + chr5_4:11498941-11498960 None:intergenic 30.0%
!!! CTGTTGATGATGATGTTTTT+AGG - chr5_4:11499175-11499194 Msa0837510:CDS 30.0%
! TGAAGTATTTGCAAAAAGCT+AGG - chr5_4:11499253-11499272 Msa0837510:CDS 30.0%
ATATCAAGTAGCAATTCAGA+TGG + chr5_4:11499800-11499819 None:intergenic 30.0%
! TGCTACTTGATATAATTCGA+AGG - chr5_4:11499807-11499826 Msa0837510:CDS 30.0%
GCTACTTGATATAATTCGAA+GGG - chr5_4:11499808-11499827 Msa0837510:CDS 30.0%
AACAACAATTACGCCAAAAA+AGG + chr5_4:11499997-11500016 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG + chr5_4:11500033-11500052 None:intergenic 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG - chr5_4:11500063-11500082 Msa0837510:intron 30.0%
TCTGCATATCTATTGTACTA+TGG - chr5_4:11500135-11500154 Msa0837510:intron 30.0%
ATATCTATTGTACTATGGAC+TGG - chr5_4:11500140-11500159 Msa0837510:intron 30.0%
!! GATGTTGATTCGACAAAAAA+AGG - chr5_4:11500762-11500781 Msa0837510:intron 30.0%
! TTGATTCGACAAAAAAAGGA+AGG - chr5_4:11500766-11500785 Msa0837510:intron 30.0%
TGATTCGACAAAAAAAGGAA+GGG - chr5_4:11500767-11500786 Msa0837510:intron 30.0%
CTCATTTGTTTCCCTTTATT+TGG - chr5_4:11500818-11500837 Msa0837510:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG - chr5_4:11500922-11500941 Msa0837510:CDS 30.0%
! TTTGGAGTCATAGTATGAAA+TGG - chr5_4:11500940-11500959 Msa0837510:CDS 30.0%
TTGGAGTCATAGTATGAAAT+GGG - chr5_4:11500941-11500960 Msa0837510:CDS 30.0%
TATTAGCTGCCAAAAAGATA+AGG - chr5_4:11501220-11501239 Msa0837510:CDS 30.0%
GTGTTGGAAATTTGAAAAGT+GGG + chr5_4:11501359-11501378 None:intergenic 30.0%
TGTGTTGGAAATTTGAAAAG+TGG + chr5_4:11501360-11501379 None:intergenic 30.0%
ATGATGCAATTCATTCTTCT+CGG + chr5_4:11501607-11501626 None:intergenic 30.0%
GTAATTTGAGGAAAAGATGT+AGG + chr5_4:11501679-11501698 None:intergenic 30.0%
AAATGCTCATCAGTAATTTG+AGG + chr5_4:11501691-11501710 None:intergenic 30.0%
GAATTGCTTAAATCTCCAAT+TGG + chr5_4:11501751-11501770 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG - chr5_4:11501903-11501922 Msa0837510:intron 30.0%
GAAATACAAGGCAACTATAT+AGG + chr5_4:11502323-11502342 None:intergenic 30.0%
TAAAGCTGTTAAGGAGATGA+AGG + chr5_4:11498857-11498876 None:intergenic 35.0%
!! TTAGCTGATTTGTTCGTTTG+AGG - chr5_4:11498991-11499010 Msa0837510:CDS 35.0%
! TGTTCGTTTGAGGATTTTTC+AGG - chr5_4:11499001-11499020 Msa0837510:CDS 35.0%
!!! TTTGAGGATTTTTCAGGTGT+TGG - chr5_4:11499007-11499026 Msa0837510:CDS 35.0%
!!! TTGAGGATTTTTCAGGTGTT+GGG - chr5_4:11499008-11499027 Msa0837510:CDS 35.0%
!! TTTGTAGATCGTTTTGACCA+TGG - chr5_4:11499095-11499114 Msa0837510:CDS 35.0%
ACAACTATTTACACACACCA+TGG + chr5_4:11499115-11499134 None:intergenic 35.0%
! AAAGCTAGGTTTTTGTGATG+TGG - chr5_4:11499267-11499286 Msa0837510:CDS 35.0%
! AAGCTAGGTTTTTGTGATGT+GGG - chr5_4:11499268-11499287 Msa0837510:CDS 35.0%
!!! AGGGTTTTTTGATGTGAATG+TGG - chr5_4:11499328-11499347 Msa0837510:CDS 35.0%
!!! GGGTTTTTTGATGTGAATGT+GGG - chr5_4:11499329-11499348 Msa0837510:CDS 35.0%
CAAAGTACAAACAGATACAC+TGG + chr5_4:11499430-11499449 None:intergenic 35.0%
! TTCAGAGTGGAGAATGATTT+TGG - chr5_4:11499542-11499561 Msa0837510:CDS 35.0%
AGTGATGTTAGAGTGATATC+AGG + chr5_4:11499743-11499762 None:intergenic 35.0%
TTCTGTGTGTAAATCATGGA+GGG - chr5_4:11499883-11499902 Msa0837510:intron 35.0%
CTGAACAATCTCTTGTGTAA+CGG + chr5_4:11499909-11499928 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG - chr5_4:11499955-11499974 Msa0837510:intron 35.0%
ATCACCTGCTTTAACGAAAT+AGG + chr5_4:11499962-11499981 None:intergenic 35.0%
! TTTTCGCTGCTTATCCATTT+TGG - chr5_4:11500016-11500035 Msa0837510:intron 35.0%
CACATTGAAGCAAACTTACA+TGG + chr5_4:11500168-11500187 None:intergenic 35.0%
! CATGTAAGTTTGCTTCAATG+TGG - chr5_4:11500166-11500185 Msa0837510:intron 35.0%
!! TTTCAAGTATTGGTCTGATG+CGG + chr5_4:11500685-11500704 None:intergenic 35.0%
! GAAACAAATGAGTTGAGTTG+AGG + chr5_4:11500810-11500829 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG - chr5_4:11500836-11500855 Msa0837510:intron 35.0%
GAGGAAAACAAAGCACAAAT+CGG + chr5_4:11501104-11501123 None:intergenic 35.0%
CACAGACTTCATCATATCTT+TGG - chr5_4:11501254-11501273 Msa0837510:CDS 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG - chr5_4:11501314-11501333 Msa0837510:CDS 35.0%
CTAACAATATAGTTACACGC+TGG + chr5_4:11501544-11501563 None:intergenic 35.0%
! CCAATTGGATCTTTACCTTT+TGG + chr5_4:11501736-11501755 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG - chr5_4:11501733-11501752 Msa0837510:intron 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG - chr5_4:11501976-11501995 Msa0837510:intron 35.0%
TTATGCACAATTCTTCAGCA+TGG - chr5_4:11502157-11502176 Msa0837510:five_prime_UTR 35.0%
TTGTATTTCTCACCACACAT+GGG - chr5_4:11502334-11502353 Msa0837510:five_prime_UTR 35.0%
! TGAAAAATGGATTCCGCAAC+CGG + chr5_4:11498780-11498799 None:intergenic 40.0%
!! GTTGCGGAATCCATTTTTCA+CGG - chr5_4:11498780-11498799 Msa0837510:three_prime_UTR 40.0%
!!! GGAGGGTTTTAAAGCTGTTA+AGG + chr5_4:11498866-11498885 None:intergenic 40.0%
GAAACAGAGGCAGAAAAACA+CGG + chr5_4:11498887-11498906 None:intergenic 40.0%
GATGTTTGCAGTTATTGTGC+TGG - chr5_4:11499574-11499593 Msa0837510:CDS 40.0%
! TGTCGTTGAGAAGCATAGTA+CGG - chr5_4:11499624-11499643 Msa0837510:intron 40.0%
ATCACTTGAACCTATTCAGC+AGG - chr5_4:11499757-11499776 Msa0837510:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG - chr5_4:11499758-11499777 Msa0837510:CDS 40.0%
GTGCTTCTGTGTGTAAATCA+TGG - chr5_4:11499879-11499898 Msa0837510:intron 40.0%
CTTCTGTGTGTAAATCATGG+AGG - chr5_4:11499882-11499901 Msa0837510:intron 40.0%
GTTTGAACACGTGCATTACA+TGG - chr5_4:11500413-11500432 Msa0837510:intron 40.0%
TTCGACAAAAAAAGGAAGGG+AGG - chr5_4:11500770-11500789 Msa0837510:intron 40.0%
GACTTGAATGGGACAGAAAT+TGG - chr5_4:11501055-11501074 Msa0837510:intron 40.0%
AACAAAGCACAAATCGGTTG+AGG + chr5_4:11501098-11501117 None:intergenic 40.0%
CATTAAGGTGAATTGAACGG+AGG + chr5_4:11501123-11501142 None:intergenic 40.0%
TAGCTGCCAAAAAGATAAGG+AGG - chr5_4:11501223-11501242 Msa0837510:CDS 40.0%
AGCTGCCAAAAAGATAAGGA+GGG - chr5_4:11501224-11501243 Msa0837510:CDS 40.0%
AAAAAGATAAGGAGGGCAAC+CGG - chr5_4:11501231-11501250 Msa0837510:CDS 40.0%
AGATATGATGAAGTCTGTGC+CGG + chr5_4:11501253-11501272 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG + chr5_4:11501301-11501320 None:intergenic 40.0%
ATGCGTATGTTGGAAAACTC+AGG - chr5_4:11501304-11501323 Msa0837510:CDS 40.0%
GCTGTCATATATGGTGAACT+TGG + chr5_4:11501440-11501459 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG - chr5_4:11501476-11501495 Msa0837510:intron 40.0%
AACATTCAGCTCATAGGCAA+TGG + chr5_4:11501569-11501588 None:intergenic 40.0%
TGAGGAAAAGATGTAGGAGT+TGG + chr5_4:11501673-11501692 None:intergenic 40.0%
TTGAGTACCAGAGACTCAAA+TGG + chr5_4:11501808-11501827 None:intergenic 40.0%
TCAAAAACAAGTCTCCCAGA+TGG - chr5_4:11501824-11501843 Msa0837510:intron 40.0%
ATGCTGGTGCCTAAATTTCA+AGG - chr5_4:11501861-11501880 Msa0837510:intron 40.0%
TGCTGGTGCCTAAATTTCAA+GGG - chr5_4:11501862-11501881 Msa0837510:intron 40.0%
TAACACGGCCCTTGAAATTT+AGG + chr5_4:11501873-11501892 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG + chr5_4:11501888-11501907 None:intergenic 40.0%
GCAGGAGAAACATTATGAGA+TGG + chr5_4:11501940-11501959 None:intergenic 40.0%
GAGAAGGTTATCTTGCAGTT+TGG - chr5_4:11501967-11501986 Msa0837510:intron 40.0%
AATACTAACGACCGATTGTC+AGG + chr5_4:11502193-11502212 None:intergenic 40.0%
AGGGCTATAGAATGACATAC+AGG + chr5_4:11502251-11502270 None:intergenic 40.0%
CATGTGTGGTGAGAAATACA+AGG + chr5_4:11502335-11502354 None:intergenic 40.0%
CTTGTATTTCTCACCACACA+TGG - chr5_4:11502333-11502352 Msa0837510:five_prime_UTR 40.0%
!! GAAGGAGGCGTTGAAAATTC+CGG + chr5_4:11498839-11498858 None:intergenic 45.0%
AGCTGTTAAGGAGATGAAGG+AGG + chr5_4:11498854-11498873 None:intergenic 45.0%
GAACCAAATCGGAGAAACAG+AGG + chr5_4:11498900-11498919 None:intergenic 45.0%
! GTCGTTGAGAAGCATAGTAC+GGG - chr5_4:11499625-11499644 Msa0837510:intron 45.0%
AAGCATAGTACGGGAACTCA+AGG - chr5_4:11499634-11499653 Msa0837510:intron 45.0%
AACTCAAGGAGATGAGGGAT+GGG - chr5_4:11499648-11499667 Msa0837510:intron 45.0%
! ATGGGATTGGTAATACGTCG+AGG - chr5_4:11499666-11499685 Msa0837510:intron 45.0%
! ATTGGTAATACGTCGAGGAG+AGG - chr5_4:11499671-11499690 Msa0837510:intron 45.0%
AACCTATTCAGCAGGGACAA+TGG - chr5_4:11499765-11499784 Msa0837510:CDS 45.0%
ACCTATTCAGCAGGGACAAT+GGG - chr5_4:11499766-11499785 Msa0837510:CDS 45.0%
TAGAAGAGACCGAGACTTCT+TGG - chr5_4:11499831-11499850 Msa0837510:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG + chr5_4:11499935-11499954 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG + chr5_4:11499936-11499955 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG + chr5_4:11500102-11500121 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG - chr5_4:11500101-11500120 Msa0837510:intron 45.0%
GACAAAAAAAGGAAGGGAGG+CGG - chr5_4:11500773-11500792 Msa0837510:intron 45.0%
ACAAAAAAAGGAAGGGAGGC+GGG - chr5_4:11500774-11500793 Msa0837510:intron 45.0%
CTAAAATCCGACAGCCTCTA+GGG + chr5_4:11500866-11500885 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG + chr5_4:11500867-11500886 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG - chr5_4:11501067-11501086 Msa0837510:intron 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG + chr5_4:11501232-11501251 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG + chr5_4:11501449-11501468 None:intergenic 45.0%
AATGAAATCTCCTGCTGGAC+CGG + chr5_4:11501498-11501517 None:intergenic 45.0%
CCTAGAATGAAATCTCCTGC+TGG + chr5_4:11501503-11501522 None:intergenic 45.0%
CCAGCAGGAGATTTCATTCT+AGG - chr5_4:11501500-11501519 Msa0837510:intron 45.0%
CAGGAGATTTCATTCTAGGC+AGG - chr5_4:11501504-11501523 Msa0837510:intron 45.0%
TAGTTACACGCTGGAACTCT+TGG + chr5_4:11501535-11501554 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG - chr5_4:11501581-11501600 Msa0837510:intron 45.0%
TATACCTGTCTCAGCTGTTC+AGG - chr5_4:11501633-11501652 Msa0837510:intron 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG + chr5_4:11501730-11501749 None:intergenic 45.0%
ATAACCTTCTCTTGCTCTGC+AGG + chr5_4:11501958-11501977 None:intergenic 45.0%
TCAAGCATATCGCAAAGGCT+TGG + chr5_4:11502047-11502066 None:intergenic 45.0%
CATGGATCTCATTCACATGC+TGG + chr5_4:11502087-11502106 None:intergenic 45.0%
CAGCATGTGAATGAGATCCA+TGG - chr5_4:11502085-11502104 Msa0837510:five_prime_UTR 45.0%
!! AAACCAGCGGACTATAACCA+TGG + chr5_4:11502105-11502124 None:intergenic 45.0%
ACAACAGCAATACCCATGTG+TGG + chr5_4:11502349-11502368 None:intergenic 45.0%
CGGAATGGTGTGGCATGAAT+CGG + chr5_4:11498760-11498779 None:intergenic 50.0%
CGATTCATGCCACACCATTC+CGG - chr5_4:11498758-11498777 Msa0837510:three_prime_UTR 50.0%
! AATGGATTCCGCAACCGGAA+TGG + chr5_4:11498775-11498794 None:intergenic 50.0%
!! GCGGAATCCATTTTTCACGG+CGG - chr5_4:11498783-11498802 Msa0837510:three_prime_UTR 50.0%
!! TCCATTTTTCACGGCGGTGT+TGG - chr5_4:11498789-11498808 Msa0837510:three_prime_UTR 50.0%
ACCAACACCGCCGTGAAAAA+TGG + chr5_4:11498793-11498812 None:intergenic 50.0%
!! ATTTTTCACGGCGGTGTTGG+TGG - chr5_4:11498792-11498811 Msa0837510:three_prime_UTR 50.0%
CAGAGGCAGAAAAACACGGA+GGG + chr5_4:11498883-11498902 None:intergenic 50.0%
ACAGAGGCAGAAAAACACGG+AGG + chr5_4:11498884-11498903 None:intergenic 50.0%
! CTGCCTCTGTTTCTCCGATT+TGG - chr5_4:11498894-11498913 Msa0837510:three_prime_UTR 50.0%
TACGGGAACTCAAGGAGATG+AGG - chr5_4:11499642-11499661 Msa0837510:intron 50.0%
ACGGGAACTCAAGGAGATGA+GGG - chr5_4:11499643-11499662 Msa0837510:intron 50.0%
GAACTCAAGGAGATGAGGGA+TGG - chr5_4:11499647-11499666 Msa0837510:intron 50.0%
AAGGAGATGAGGGATGGGAT+TGG - chr5_4:11499653-11499672 Msa0837510:intron 50.0%
TAATACGTCGAGGAGAGGTG+TGG - chr5_4:11499676-11499695 Msa0837510:intron 50.0%
CAAGTAGGCATTCACAGCGT+CGG - chr5_4:11499699-11499718 Msa0837510:intron 50.0%
CACTGTATCGGAGAATCACG+AGG + chr5_4:11500090-11500109 None:intergenic 50.0%
CTCCGATACAGTGCTTCATC+AGG - chr5_4:11500097-11500116 Msa0837510:intron 50.0%
CGATACAGTGCTTCATCAGG+AGG - chr5_4:11500100-11500119 Msa0837510:intron 50.0%
ATCGGTTGAGGTGTATCCAC+AGG + chr5_4:11501086-11501105 None:intergenic 50.0%
CGTTCCAGCAATGCGTATGT+TGG - chr5_4:11501294-11501313 Msa0837510:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG - chr5_4:11501451-11501470 Msa0837510:intron 50.0%
GCGGAGAACATTCAGCTCAT+AGG + chr5_4:11501575-11501594 None:intergenic 50.0%
CTGAATGTTCTCCGCACTAG+AGG - chr5_4:11501580-11501599 Msa0837510:intron 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG - chr5_4:11501638-11501657 Msa0837510:intron 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG - chr5_4:11501639-11501658 Msa0837510:intron 50.0%
TGCAGCTGTTCATGCCATCT+GGG + chr5_4:11501841-11501860 None:intergenic 50.0%
TTGCAGCTGTTCATGCCATC+TGG + chr5_4:11501842-11501861 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG - chr5_4:11501876-11501895 Msa0837510:intron 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG - chr5_4:11501951-11501970 Msa0837510:intron 50.0%
GGAAGGCAGAGAGTGGATAA+CGG + chr5_4:11502026-11502045 None:intergenic 50.0%
GCATATCGCAAAGGCTTGGA+AGG + chr5_4:11502043-11502062 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG + chr5_4:11502052-11502071 None:intergenic 50.0%
GATCCATGGTTATAGTCCGC+TGG - chr5_4:11502099-11502118 Msa0837510:five_prime_UTR 50.0%
GTGAGATGCAGCCTGACAAT+CGG - chr5_4:11502179-11502198 Msa0837510:five_prime_UTR 50.0%
ATGCCACACCATTCCGGTTG+CGG - chr5_4:11498764-11498783 Msa0837510:three_prime_UTR 55.0%
ATTCCGCAACCGGAATGGTG+TGG + chr5_4:11498770-11498789 None:intergenic 55.0%
TTCCGGCGAAAACCCGAAGA+GGG + chr5_4:11498822-11498841 None:intergenic 55.0%
ATTCCGGCGAAAACCCGAAG+AGG + chr5_4:11498823-11498842 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG + chr5_4:11499770-11499789 None:intergenic 55.0%
ACGTGCAGGCCAAGAAGTCT+CGG + chr5_4:11499843-11499862 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG + chr5_4:11499857-11499876 None:intergenic 55.0%
GTTCAGACTCCCGAAGAGTG+TGG - chr5_4:11499923-11499942 Msa0837510:intron 55.0%
ATCGGAGAATCACGAGGACC+CGG + chr5_4:11500084-11500103 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG - chr5_4:11500849-11500868 Msa0837510:intron 55.0%
TGTATTCCAGCTCCGTGTGG+AGG + chr5_4:11501466-11501485 None:intergenic 55.0%
GGTTGTATTCCAGCTCCGTG+TGG + chr5_4:11501469-11501488 None:intergenic 55.0%
AACCAAATAGCCGGTCCAGC+AGG - chr5_4:11501485-11501504 Msa0837510:intron 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG + chr5_4:11501594-11501613 None:intergenic 55.0%
CCTTCCTGAACAGCTGAGAC+AGG + chr5_4:11501640-11501659 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG - chr5_4:11501637-11501656 Msa0837510:intron 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG - chr5_4:11501640-11501659 Msa0837510:intron 55.0%
TTCAACCCTCGCAGAGTTGC+CGG - chr5_4:11501768-11501787 Msa0837510:intron 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG - chr5_4:11501782-11501801 Msa0837510:intron 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG + chr5_4:11501790-11501809 None:intergenic 55.0%
CCAGAGACTCAAATGGCCCT+TGG + chr5_4:11501801-11501820 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG - chr5_4:11501798-11501817 Msa0837510:intron 55.0%
GGCATGAACAGCTGCAATGC+TGG - chr5_4:11501845-11501864 Msa0837510:intron 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG + chr5_4:11502033-11502052 None:intergenic 55.0%
!! TTTCACGGCGGTGTTGGTGG+CGG - chr5_4:11498795-11498814 Msa0837510:three_prime_UTR 60.0%
!! TGTTGGTGGCGGACCCTCTT+CGG - chr5_4:11498806-11498825 Msa0837510:three_prime_UTR 60.0%
!! GACCCTCTTCGGGTTTTCGC+CGG - chr5_4:11498817-11498836 Msa0837510:three_prime_UTR 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG - chr5_4:11499684-11499703 Msa0837510:intron 60.0%
AAGGAAGGGAGGCGGGAGTA+TGG - chr5_4:11500781-11500800 Msa0837510:intron 60.0%
! AGGAAGGGAGGCGGGAGTAT+GGG - chr5_4:11500782-11500801 Msa0837510:intron 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG + chr5_4:11500858-11500877 None:intergenic 60.0%
CGGTTCACCCTAGAGGCTGT+CGG - chr5_4:11500856-11500875 Msa0837510:intron 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG + chr5_4:11501462-11501481 None:intergenic 60.0%
CTCCTGCTGGACCGGCTATT+TGG + chr5_4:11501490-11501509 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG - chr5_4:11501718-11501737 Msa0837510:intron 60.0%
CTGAACCGGCAACTCTGCGA+GGG + chr5_4:11501776-11501795 None:intergenic 60.0%
TCTGAACCGGCAACTCTGCG+AGG + chr5_4:11501777-11501796 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG - chr5_4:11501781-11501800 Msa0837510:intron 60.0%
!! GTTGGTGGCGGACCCTCTTC+GGG - chr5_4:11498807-11498826 Msa0837510:three_prime_UTR 65.0%
AGCCAACCTCCACACGGAGC+TGG - chr5_4:11501457-11501476 Msa0837510:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11498680 11502371 11498680 ID=Msa0837510;Name=Msa0837510
chr5_4 mRNA 11498680 11502371 11498680 ID=Msa0837510-mRNA-1;Parent=Msa0837510;Name=Msa0837510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=381|1|1|1|0.75|0.6|5|273|416
chr5_4 exon 11498680 11499631 11498680 ID=Msa0837510-mRNA-1:exon:5040;Parent=Msa0837510-mRNA-1
chr5_4 exon 11499726 11499855 11499726 ID=Msa0837510-mRNA-1:exon:5039;Parent=Msa0837510-mRNA-1
chr5_4 exon 11500883 11500970 11500883 ID=Msa0837510-mRNA-1:exon:5038;Parent=Msa0837510-mRNA-1
chr5_4 exon 11501075 11501466 11501075 ID=Msa0837510-mRNA-1:exon:5037;Parent=Msa0837510-mRNA-1
chr5_4 exon 11502029 11502371 11502029 ID=Msa0837510-mRNA-1:exon:5036;Parent=Msa0837510-mRNA-1
chr5_4 five_prime_UTR 11502029 11502371 11502029 ID=Msa0837510-mRNA-1:five_prime_utr;Parent=Msa0837510-mRNA-1
chr5_4 five_prime_UTR 11501429 11501466 11501429 ID=Msa0837510-mRNA-1:five_prime_utr;Parent=Msa0837510-mRNA-1
chr5_4 CDS 11501075 11501428 11501075 ID=Msa0837510-mRNA-1:cds;Parent=Msa0837510-mRNA-1
chr5_4 CDS 11500883 11500970 11500883 ID=Msa0837510-mRNA-1:cds;Parent=Msa0837510-mRNA-1
chr5_4 CDS 11499726 11499855 11499726 ID=Msa0837510-mRNA-1:cds;Parent=Msa0837510-mRNA-1
chr5_4 CDS 11498953 11499631 11498953 ID=Msa0837510-mRNA-1:cds;Parent=Msa0837510-mRNA-1
chr5_4 three_prime_UTR 11498680 11498952 11498680 ID=Msa0837510-mRNA-1:three_prime_utr;Parent=Msa0837510-mRNA-1
Gene Sequence

>Msa0837510

ATGTCGTTGAGAAGCATAGTACGGGAACTCAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAGCATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>Msa0837510

MSLRSIVRELKEMRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*