AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0716740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716740 MtrunA17_Chr5g0404321 97.596 416 10 0 1 416 1 416 0.0 841
Msa0716740 MtrunA17_Chr8g0373001 74.519 416 102 2 1 416 1 412 0.0 649
Msa0716740 MtrunA17_Chr1g0155301 62.903 434 131 8 1 416 1 422 0.0 527
Msa0716740 MtrunA17_Chr8g0373361 58.111 413 151 9 1 409 11 405 1.97e-159 455
Msa0716740 MtrunA17_Chr2g0278511 55.069 434 170 12 1 416 1 427 1.07e-153 441
Msa0716740 MtrunA17_Chr2g0286441 57.182 369 151 3 48 416 32 393 1.57e-149 429
Msa0716740 MtrunA17_Chr1g0201891 53.182 440 173 12 1 416 1 431 6.26e-149 429
Msa0716740 MtrunA17_Chr1g0196071 52.871 418 179 7 1 416 1 402 3.18e-146 421
Msa0716740 MtrunA17_Chr8g0373331 51.090 413 129 9 1 407 1 346 8.66e-132 382
Msa0716740 MtrunA17_Chr2g0315641 50.829 362 146 2 55 416 42 371 2.35e-127 372
Msa0716740 MtrunA17_Chr2g0315651 44.772 373 167 6 48 416 30 367 4.20e-101 305
Msa0716740 MtrunA17_Chr8g0373351 45.663 392 95 11 37 413 3 291 9.75e-95 286
Msa0716740 MtrunA17_Chr1g0156151 51.982 227 101 2 1 223 1 223 3.32e-76 236
Msa0716740 MtrunA17_Chr8g0373341 53.333 225 59 6 1 207 1 197 1.16e-55 186
Msa0716740 MtrunA17_Chr8g0373341 55.556 117 51 1 291 406 204 320 4.43e-34 129
Msa0716740 MtrunA17_Chr3g0091401 71.134 97 22 1 98 194 9 99 2.84e-37 131
Msa0716740 MtrunA17_Chr2g0334041 36.697 109 54 4 313 415 260 359 1.55e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716740 AT2G18280.2 63.876 418 124 7 1 416 1 393 0.0 518
Msa0716740 AT2G18280.1 63.876 418 124 7 1 416 1 393 0.0 518
Msa0716740 AT1G47270.3 58.333 396 131 9 32 416 16 388 9.58e-155 442
Msa0716740 AT1G47270.1 58.333 396 131 9 32 416 41 413 1.23e-154 443
Msa0716740 AT1G47270.2 58.333 396 131 9 32 416 40 412 1.40e-154 443
Msa0716740 AT1G25280.1 53.795 448 172 9 1 416 1 445 1.42e-153 442
Msa0716740 AT2G47900.3 53.589 418 181 5 1 416 1 407 6.76e-152 436
Msa0716740 AT2G47900.2 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0716740 AT2G47900.1 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0716740 AT1G76900.2 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0716740 AT1G76900.1 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0716740 AT1G76900.3 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0716740 AT1G43640.1 50.000 442 182 12 1 416 1 429 1.51e-142 413
Msa0716740 AT5G18680.1 53.887 373 147 7 51 416 35 389 2.56e-130 380
Msa0716740 AT1G43640.2 52.151 372 147 9 67 416 1 363 1.84e-128 375
Msa0716740 AT3G06380.1 51.671 389 168 7 31 416 9 380 4.05e-128 375
Msa0716740 AT1G53320.1 51.934 362 148 3 55 416 44 379 1.60e-124 365
Msa0716740 AT5G18680.2 54.369 309 117 6 114 416 7 297 1.69e-105 314
Msa0716740 AT3G06380.2 54.153 301 119 6 118 416 5 288 2.10e-101 303
Msa0716740 AT1G25280.3 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0716740 AT1G25280.2 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0716740 AT1G61940.2 50.575 87 43 0 58 144 1 87 4.21e-26 106
Msa0716740 AT1G61940.1 54.098 61 28 0 58 118 1 61 6.01e-16 77.4

Find 145 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 5_1:-10217260 None:intergenic
TTTATGTTAGTTGTTGTATC+TGG 0.216186 5_1:+10217990 Msa0716740:three_prime_UTR
CCAATTGGATCTTTACCTTT+TGG 0.222216 5_1:-10217506 None:intergenic
TAACACGGCCCTTGAAATTT+AGG 0.254077 5_1:-10217643 None:intergenic
CTGCCTCTGTTTCTCCGATT+TGG 0.257203 5_1:+10214668 Msa0716740:five_prime_UTR
CCAGCAGGAGATTTCATTCT+AGG 0.267212 5_1:+10217273 Msa0716740:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 5_1:+10217769 Msa0716740:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 5_1:+10217027 Msa0716740:CDS
TGTTGGTGGCGGACCCTCTT+CGG 0.290583 5_1:+10214580 Msa0716740:five_prime_UTR
CTAAAATTAAATTTAGTTGC+AGG 0.290792 5_1:-10218041 None:intergenic
ATCACCTGCTTTAACGAAAT+AGG 0.313540 5_1:-10215733 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 5_1:-10217612 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 5_1:+10217749 Msa0716740:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 5_1:-10215707 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 5_1:+10217541 Msa0716740:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 5_1:-10215706 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 5_1:+10217740 Msa0716740:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 5_1:+10217406 Msa0716740:CDS
GTTGGTGGCGGACCCTCTTC+GGG 0.370624 5_1:+10214581 Msa0716740:five_prime_UTR
TAGAAGAGACCGAGACTTCT+TGG 0.372683 5_1:+10215605 Msa0716740:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 5_1:+10215909 Msa0716740:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 5_1:-10217377 None:intergenic
TTAGCTGATTTGTTCGTTTG+AGG 0.395892 5_1:+10214765 Msa0716740:five_prime_UTR
CGATTCATGCCACACCATTC+CGG 0.400750 5_1:+10214532 Msa0716740:five_prime_UTR
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 5_1:+10217571 Msa0716740:CDS
TAAAGCTGTTAAGGAGATGA+AGG 0.412584 5_1:-10214628 None:intergenic
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 5_1:-10217728 None:intergenic
GAAATACAAGGCAACTATAT+AGG 0.419249 5_1:-10218093 None:intergenic
CTCATAACATAAACATAGGT+TGG 0.424399 5_1:+10214506 Msa0716740:five_prime_UTR
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 5_1:+10217634 Msa0716740:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 5_1:-10217443 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 5_1:+10215540 Msa0716740:CDS
AATACTAACGACCGATTGTC+AGG 0.447228 5_1:-10217963 None:intergenic
AGTGATGTTAGAGTGATATC+AGG 0.447610 5_1:-10215514 None:intergenic
ATGCCACACCATTCCGGTTG+CGG 0.449706 5_1:+10214538 Msa0716740:five_prime_UTR
GAATTGCTTAAATCTCCAAT+TGG 0.451744 5_1:-10217521 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 5_1:-10217219 None:intergenic
GAAGGAGGCGTTGAAAATTC+CGG 0.455460 5_1:-10214610 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 5_1:+10215871 Msa0716740:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 5_1:-10215541 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 5_1:+10217506 Msa0716740:CDS
TAAAATTAAATTTAGTTGCA+GGG 0.470751 5_1:-10218040 None:intergenic
ATCACTTGAACCTATTCAGC+AGG 0.471218 5_1:+10215531 Msa0716740:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 5_1:-10217305 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 5_1:+10217230 Msa0716740:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 5_1:+10217618 Msa0716740:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 5_1:-10217268 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 5_1:-10217345 None:intergenic
CTTGTATTTCTCACCACACA+TGG 0.480634 5_1:+10218106 Msa0716740:three_prime_UTR
CGGAATGGTGTGGCATGAAT+CGG 0.481540 5_1:-10214531 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 5_1:+10215422 Msa0716740:CDS
CTGAATGTTCTCCGCACTAG+AGG 0.484848 5_1:+10217353 Msa0716740:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 5_1:+10217067 Msa0716740:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 5_1:+10217258 Msa0716740:CDS
TTTACTCATAACATAAACAT+AGG 0.496397 5_1:+10214502 Msa0716740:five_prime_UTR
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 5_1:-10217560 None:intergenic
GTAATTTGAGGAAAAGATGT+AGG 0.503684 5_1:-10217449 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 5_1:+10215421 Msa0716740:CDS
TGCAGCTGTTCATGCCATCT+GGG 0.506117 5_1:-10217611 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 5_1:+10215729 Msa0716740:CDS
AAACCAGCGGACTATAACCA+TGG 0.507514 5_1:-10217875 None:intergenic
TTTCACGGCGGTGTTGGTGG+CGG 0.510082 5_1:+10214569 Msa0716740:five_prime_UTR
GATGTTTGCAGTTATTGTGC+TGG 0.512169 5_1:+10215348 Msa0716740:intron
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 5_1:-10217410 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 5_1:+10217554 Msa0716740:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 5_1:+10217277 Msa0716740:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 5_1:-10217857 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 5_1:-10217578 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 5_1:+10217676 Msa0716740:CDS
GTGAGATGCAGCCTGACAAT+CGG 0.535093 5_1:+10217952 Msa0716740:three_prime_UTR
GAAACGACAACAGCACGTGC+AGG 0.536741 5_1:-10215628 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 5_1:-10217273 None:intergenic
AAATGCTCATCAGTAATTTG+AGG 0.539761 5_1:-10217461 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 5_1:+10217410 Msa0716740:CDS
TGTCGTTGAGAAGCATAGTA+CGG 0.541748 5_1:+10215398 Msa0716740:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 5_1:+10217411 Msa0716740:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 5_1:+10215458 Msa0716740:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 5_1:-10217813 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 5_1:-10217210 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 5_1:+10215653 Msa0716740:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 5_1:-10217571 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 5_1:-10217232 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 5_1:+10215539 Msa0716740:CDS
ACGTGCAGGCCAAGAAGTCT+CGG 0.554427 5_1:-10215614 None:intergenic
AAGCATAGTACGGGAACTCA+AGG 0.555180 5_1:+10215408 Msa0716740:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 5_1:-10217547 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 5_1:+10215427 Msa0716740:CDS
GATCCATGGTTATAGTCCGC+TGG 0.557580 5_1:+10217872 Msa0716740:three_prime_UTR
TGCTACTTGATATAATTCGA+AGG 0.558581 5_1:+10215581 Msa0716740:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 5_1:+10217412 Msa0716740:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 5_1:-10215855 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 5_1:-10215873 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 5_1:-10217364 None:intergenic
AATGGATTCCGCAACCGGAA+TGG 0.565534 5_1:-10214546 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 5_1:+10217413 Msa0716740:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 5_1:-10217546 None:intergenic
GTCGTTGAGAAGCATAGTAC+GGG 0.569276 5_1:+10215399 Msa0716740:CDS
ATATCTATTGTACTATGGAC+TGG 0.572719 5_1:+10215914 Msa0716740:CDS
AGGGCTATAGAATGACATAC+AGG 0.575549 5_1:-10218021 None:intergenic
GCTACTTGATATAATTCGAA+GGG 0.575810 5_1:+10215582 Msa0716740:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 5_1:+10217491 Msa0716740:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 5_1:-10217817 None:intergenic
GAACCAAATCGGAGAAACAG+AGG 0.582674 5_1:-10214671 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 5_1:+10217249 Msa0716740:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 5_1:+10215874 Msa0716740:CDS
TTATGCACAATTCTTCAGCA+TGG 0.590762 5_1:+10217930 Msa0716740:three_prime_UTR
TACGGGAACTCAAGGAGATG+AGG 0.591073 5_1:+10215416 Msa0716740:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 5_1:-10215680 None:intergenic
ACGGGAACTCAAGGAGATGA+GGG 0.594362 5_1:+10215417 Msa0716740:CDS
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 5_1:+10217724 Msa0716740:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 5_1:+10217077 Msa0716740:CDS
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 5_1:+10217555 Msa0716740:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 5_1:-10217710 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 5_1:+10215473 Msa0716740:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 5_1:-10217796 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 5_1:-10217822 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 5_1:+10217649 Msa0716740:CDS
CAGCATGTGAATGAGATCCA+TGG 0.613020 5_1:+10217858 Msa0716740:exon
ATAATGAAGCTTCTAAAACC+CGG 0.616872 5_1:-10214712 None:intergenic
TGAATGTTCTCCGCACTAGA+GGG 0.618617 5_1:+10217354 Msa0716740:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 5_1:-10217803 None:intergenic
TTCCGGCGAAAACCCGAAGA+GGG 0.630212 5_1:-10214593 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 5_1:+10215657 Msa0716740:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 5_1:-10217023 None:intergenic
TTGTATTTCTCACCACACAT+GGG 0.641041 5_1:+10218107 Msa0716740:three_prime_UTR
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 5_1:+10215697 Msa0716740:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 5_1:+10217635 Msa0716740:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 5_1:-10217658 None:intergenic
ATTCCGGCGAAAACCCGAAG+AGG 0.644601 5_1:-10214594 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 5_1:-10217236 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 5_1:+10215656 Msa0716740:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 5_1:+10215445 Msa0716740:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 5_1:-10215571 None:intergenic
CATGTGTGGTGAGAAATACA+AGG 0.651293 5_1:-10218105 None:intergenic
ATTCCGCAACCGGAATGGTG+TGG 0.659382 5_1:-10214541 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 5_1:-10217239 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 5_1:-10215861 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 5_1:+10215875 Msa0716740:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 5_1:+10215532 Msa0716740:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 5_1:+10215450 Msa0716740:CDS
ATGGGATTGGTAATACGTCG+AGG 0.700501 5_1:+10215440 Msa0716740:CDS
CTAACAATATAGTTACACGC+TGG 0.700643 5_1:-10217314 None:intergenic
TATGACAGCCAACCTCCACA+CGG 0.700970 5_1:+10217224 Msa0716740:CDS
AGCTGTTAAGGAGATGAAGG+AGG 0.704439 5_1:-10214625 None:intergenic
ACAACAGCAATACCCATGTG+TGG 0.714668 5_1:-10218119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTGTTATGTTGT+TGG + chr5_1:10214972-10214991 Msa0716740:intron 15.0%
!!! TTATTGTAATGCTAAATTTT+AGG + chr5_1:10216413-10216432 Msa0716740:intron 15.0%
!!! TATTGTAATGCTAAATTTTA+GGG + chr5_1:10216414-10216433 Msa0716740:intron 15.0%
!! TAAAATTAAATTTAGTTGCA+GGG - chr5_1:10218043-10218062 None:intergenic 15.0%
!! TTTACTCATAACATAAACAT+AGG + chr5_1:10214502-10214521 Msa0716740:five_prime_UTR 20.0%
!! TTTGTAAAATTGTGTTTGTT+AGG + chr5_1:10215143-10215162 Msa0716740:intron 20.0%
!!! TTGTAAAATTGTGTTTGTTA+GGG + chr5_1:10215144-10215163 Msa0716740:intron 20.0%
!! GATATTAGCATACAAAAAAT+TGG + chr5_1:10215252-10215271 Msa0716740:intron 20.0%
!!! TTTTCATTCTTTTTTCTCAA+AGG + chr5_1:10215988-10216007 Msa0716740:intron 20.0%
!!! TTTCATTCTTTTTTCTCAAA+GGG + chr5_1:10215989-10216008 Msa0716740:intron 20.0%
!! TTATGAATTTAGATCTTGAA+CGG + chr5_1:10216058-10216077 Msa0716740:intron 20.0%
!!! TTTTATTGCACTAAATATGT+AGG + chr5_1:10216084-10216103 Msa0716740:intron 20.0%
!! TTTATTGCACTAAATATGTA+GGG + chr5_1:10216085-10216104 Msa0716740:intron 20.0%
!! ACTTTCTCAAATTAATTACT+TGG + chr5_1:10216163-10216182 Msa0716740:intron 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG - chr5_1:10216605-10216624 None:intergenic 20.0%
!!! TTTTTAACTTCTGATTTGAA+TGG + chr5_1:10216816-10216835 Msa0716740:intron 20.0%
!!! TTTTAACTTCTGATTTGAAT+GGG + chr5_1:10216817-10216836 Msa0716740:intron 20.0%
!! TACCAATTTCAAAATCATTA+AGG - chr5_1:10216911-10216930 None:intergenic 20.0%
!!! AACTGATGATAAATTTTGAT+AGG + chr5_1:10217171-10217190 Msa0716740:intron 20.0%
!! TGGAAAAGATATATTTACTA+TGG + chr5_1:10217769-10217788 Msa0716740:CDS 20.0%
!! CTAAAATTAAATTTAGTTGC+AGG - chr5_1:10218044-10218063 None:intergenic 20.0%
! AAAAACAAGAAGAACCAAAT+CGG - chr5_1:10214685-10214704 None:intergenic 25.0%
!!! TTGGTTCTTCTTGTTTTTTA+TGG + chr5_1:10214687-10214706 Msa0716740:five_prime_UTR 25.0%
!!! TTTTAGAAGCTTCATTATCA+AGG + chr5_1:10214717-10214736 Msa0716740:five_prime_UTR 25.0%
! ATTTATGAATGTGAGCAAAT+AGG + chr5_1:10215082-10215101 Msa0716740:intron 25.0%
! TTTATGAATGTGAGCAAATA+GGG + chr5_1:10215083-10215102 Msa0716740:intron 25.0%
!!! ATGTGGGTTTTTTTGTTTTT+AGG + chr5_1:10215119-10215138 Msa0716740:intron 25.0%
!!! TGTTTTTATAAACTTCAGAG+TGG + chr5_1:10215303-10215322 Msa0716740:intron 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG + chr5_1:10215755-10215774 Msa0716740:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG + chr5_1:10215836-10215855 Msa0716740:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG + chr5_1:10216032-10216051 Msa0716740:intron 25.0%
! TTAATTACACGTGCATTATT+TGG + chr5_1:10216326-10216345 Msa0716740:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG + chr5_1:10216426-10216445 Msa0716740:intron 25.0%
!!! TTTAAGCAATTTTCGAGTAT+TGG - chr5_1:10216468-10216487 None:intergenic 25.0%
! CAAGTAATTTCTTAACTATG+AGG - chr5_1:10216512-10216531 None:intergenic 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG + chr5_1:10216592-10216611 Msa0716740:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG - chr5_1:10216606-10216625 None:intergenic 25.0%
!!! TAGATGTTCTTTTTCATTGT+TGG + chr5_1:10216770-10216789 Msa0716740:intron 25.0%
! AATCATTAAGGTGAATTGAA+CGG - chr5_1:10216899-10216918 None:intergenic 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG + chr5_1:10216906-10216925 Msa0716740:intron 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG + chr5_1:10216949-10216968 Msa0716740:intron 25.0%
!! AGATAAAATAAAGAGTGTGT+TGG - chr5_1:10217148-10217167 None:intergenic 25.0%
!! TTTTGATAGGTCTAACTTTT+TGG + chr5_1:10217184-10217203 Msa0716740:intron 25.0%
!! TTTGATAGGTCTAACTTTTT+GGG + chr5_1:10217185-10217204 Msa0716740:intron 25.0%
! ATATAGATGAAAAAAACCAG+CGG - chr5_1:10217891-10217910 None:intergenic 25.0%
! TTTATGTTAGTTGTTGTATC+TGG + chr5_1:10217990-10218009 Msa0716740:three_prime_UTR 25.0%
CTCATAACATAAACATAGGT+TGG + chr5_1:10214506-10214525 Msa0716740:five_prime_UTR 30.0%
!!! CTTCTTGTTTTTTATGGATC+CGG + chr5_1:10214693-10214712 Msa0716740:five_prime_UTR 30.0%
!!! TTCTTGTTTTTTATGGATCC+GGG + chr5_1:10214694-10214713 Msa0716740:five_prime_UTR 30.0%
!! ATAATGAAGCTTCTAAAACC+CGG - chr5_1:10214715-10214734 None:intergenic 30.0%
!!! CTGTTGATGATGATGTTTTT+AGG + chr5_1:10214949-10214968 Msa0716740:intron 30.0%
! TGAAGTATTTGCAAAAAGCT+AGG + chr5_1:10215027-10215046 Msa0716740:intron 30.0%
ATATCAAGTAGCAATTCAGA+TGG - chr5_1:10215574-10215593 None:intergenic 30.0%
! TGCTACTTGATATAATTCGA+AGG + chr5_1:10215581-10215600 Msa0716740:CDS 30.0%
GCTACTTGATATAATTCGAA+GGG + chr5_1:10215582-10215601 Msa0716740:CDS 30.0%
AACAACAATTACGCCAAAAA+AGG - chr5_1:10215771-10215790 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG - chr5_1:10215807-10215826 None:intergenic 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG + chr5_1:10215837-10215856 Msa0716740:intron 30.0%
TCTGCATATCTATTGTACTA+TGG + chr5_1:10215909-10215928 Msa0716740:CDS 30.0%
ATATCTATTGTACTATGGAC+TGG + chr5_1:10215914-10215933 Msa0716740:CDS 30.0%
!! GATGTTGATTCGACAAAAAA+AGG + chr5_1:10216535-10216554 Msa0716740:intron 30.0%
! TTGATTCGACAAAAAAAGGA+AGG + chr5_1:10216539-10216558 Msa0716740:intron 30.0%
TGATTCGACAAAAAAAGGAA+GGG + chr5_1:10216540-10216559 Msa0716740:intron 30.0%
CTCATTTGTTTCCCTTTATT+TGG + chr5_1:10216591-10216610 Msa0716740:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG + chr5_1:10216695-10216714 Msa0716740:intron 30.0%
! TTTGGAGTCATAGTATGAAA+TGG + chr5_1:10216713-10216732 Msa0716740:intron 30.0%
TTGGAGTCATAGTATGAAAT+GGG + chr5_1:10216714-10216733 Msa0716740:intron 30.0%
TATTAGCTGCCAAAAAGATA+AGG + chr5_1:10216993-10217012 Msa0716740:CDS 30.0%
GTGTTGGAAATTTGAAAAGT+GGG - chr5_1:10217132-10217151 None:intergenic 30.0%
TGTGTTGGAAATTTGAAAAG+TGG - chr5_1:10217133-10217152 None:intergenic 30.0%
ATGATGCAATTCATTCTTCT+CGG - chr5_1:10217380-10217399 None:intergenic 30.0%
GTAATTTGAGGAAAAGATGT+AGG - chr5_1:10217452-10217471 None:intergenic 30.0%
AAATGCTCATCAGTAATTTG+AGG - chr5_1:10217464-10217483 None:intergenic 30.0%
GAATTGCTTAAATCTCCAAT+TGG - chr5_1:10217524-10217543 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG + chr5_1:10217676-10217695 Msa0716740:CDS 30.0%
GAAATACAAGGCAACTATAT+AGG - chr5_1:10218096-10218115 None:intergenic 30.0%
TAAAGCTGTTAAGGAGATGA+AGG - chr5_1:10214631-10214650 None:intergenic 35.0%
!! TTAGCTGATTTGTTCGTTTG+AGG + chr5_1:10214765-10214784 Msa0716740:five_prime_UTR 35.0%
! TGTTCGTTTGAGGATTTTTC+AGG + chr5_1:10214775-10214794 Msa0716740:five_prime_UTR 35.0%
!!! TTTGAGGATTTTTCAGGTGT+TGG + chr5_1:10214781-10214800 Msa0716740:intron 35.0%
!!! TTGAGGATTTTTCAGGTGTT+GGG + chr5_1:10214782-10214801 Msa0716740:intron 35.0%
!! TTTGTAGATCGTTTTGACCA+TGG + chr5_1:10214869-10214888 Msa0716740:intron 35.0%
ACAACTATTTACACACACCA+TGG - chr5_1:10214889-10214908 None:intergenic 35.0%
! AAAGCTAGGTTTTTGTGATG+TGG + chr5_1:10215041-10215060 Msa0716740:intron 35.0%
! AAGCTAGGTTTTTGTGATGT+GGG + chr5_1:10215042-10215061 Msa0716740:intron 35.0%
!!! AGGGTTTTTTGATGTGAATG+TGG + chr5_1:10215102-10215121 Msa0716740:intron 35.0%
!!! GGGTTTTTTGATGTGAATGT+GGG + chr5_1:10215103-10215122 Msa0716740:intron 35.0%
CAAAGTACAAACAGATACAC+TGG - chr5_1:10215204-10215223 None:intergenic 35.0%
! TTCAGAGTGGAGAATGATTT+TGG + chr5_1:10215316-10215335 Msa0716740:intron 35.0%
AGTGATGTTAGAGTGATATC+AGG - chr5_1:10215517-10215536 None:intergenic 35.0%
TTCTGTGTGTAAATCATGGA+GGG + chr5_1:10215657-10215676 Msa0716740:CDS 35.0%
CTGAACAATCTCTTGTGTAA+CGG - chr5_1:10215683-10215702 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG + chr5_1:10215729-10215748 Msa0716740:CDS 35.0%
ATCACCTGCTTTAACGAAAT+AGG - chr5_1:10215736-10215755 None:intergenic 35.0%
! TTTTCGCTGCTTATCCATTT+TGG + chr5_1:10215790-10215809 Msa0716740:intron 35.0%
CACATTGAAGCAAACTTACA+TGG - chr5_1:10215942-10215961 None:intergenic 35.0%
! CATGTAAGTTTGCTTCAATG+TGG + chr5_1:10215940-10215959 Msa0716740:intron 35.0%
! GAAACAAATGAGTTGAGTTG+AGG - chr5_1:10216583-10216602 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG + chr5_1:10216609-10216628 Msa0716740:intron 35.0%
GATTTGAATGGGACAGAAAT+TGG + chr5_1:10216828-10216847 Msa0716740:intron 35.0%
GAGGAAAACAAAGCACAAAT+CGG - chr5_1:10216877-10216896 None:intergenic 35.0%
CACAGACTTCATCATATCTT+TGG + chr5_1:10217027-10217046 Msa0716740:CDS 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG + chr5_1:10217087-10217106 Msa0716740:intron 35.0%
CTAACAATATAGTTACACGC+TGG - chr5_1:10217317-10217336 None:intergenic 35.0%
! CCAATTGGATCTTTACCTTT+TGG - chr5_1:10217509-10217528 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG + chr5_1:10217506-10217525 Msa0716740:CDS 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG + chr5_1:10217749-10217768 Msa0716740:CDS 35.0%
TTATGCACAATTCTTCAGCA+TGG + chr5_1:10217930-10217949 Msa0716740:three_prime_UTR 35.0%
TTGTATTTCTCACCACACAT+GGG + chr5_1:10218107-10218126 Msa0716740:three_prime_UTR 35.0%
! TGAAAAATGGATTCCGCAAC+CGG - chr5_1:10214554-10214573 None:intergenic 40.0%
!! GTTGCGGAATCCATTTTTCA+CGG + chr5_1:10214554-10214573 Msa0716740:five_prime_UTR 40.0%
!!! GGAGGGTTTTAAAGCTGTTA+AGG - chr5_1:10214640-10214659 None:intergenic 40.0%
GAAACAGAGGCAGAAAAACA+CGG - chr5_1:10214661-10214680 None:intergenic 40.0%
GATGTTTGCAGTTATTGTGC+TGG + chr5_1:10215348-10215367 Msa0716740:intron 40.0%
! TGTCGTTGAGAAGCATAGTA+CGG + chr5_1:10215398-10215417 Msa0716740:CDS 40.0%
ATCACTTGAACCTATTCAGC+AGG + chr5_1:10215531-10215550 Msa0716740:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG + chr5_1:10215532-10215551 Msa0716740:CDS 40.0%
GTGCTTCTGTGTGTAAATCA+TGG + chr5_1:10215653-10215672 Msa0716740:CDS 40.0%
CTTCTGTGTGTAAATCATGG+AGG + chr5_1:10215656-10215675 Msa0716740:CDS 40.0%
GTTTGAACACGTGCATTACA+TGG + chr5_1:10216187-10216206 Msa0716740:intron 40.0%
!! TTTCGAGTATTGGTCTGATG+CGG - chr5_1:10216458-10216477 None:intergenic 40.0%
TTCGACAAAAAAAGGAAGGG+AGG + chr5_1:10216543-10216562 Msa0716740:intron 40.0%
AACAAAGCACAAATCGGTTG+AGG - chr5_1:10216871-10216890 None:intergenic 40.0%
CATTAAGGTGAATTGAACGG+AGG - chr5_1:10216896-10216915 None:intergenic 40.0%
TAGCTGCCAAAAAGATAAGG+AGG + chr5_1:10216996-10217015 Msa0716740:CDS 40.0%
AGCTGCCAAAAAGATAAGGA+GGG + chr5_1:10216997-10217016 Msa0716740:CDS 40.0%
AAAAAGATAAGGAGGGCAAC+CGG + chr5_1:10217004-10217023 Msa0716740:CDS 40.0%
AGATATGATGAAGTCTGTGC+CGG - chr5_1:10217026-10217045 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG - chr5_1:10217074-10217093 None:intergenic 40.0%
ATGCGTATGTTGGAAAACTC+AGG + chr5_1:10217077-10217096 Msa0716740:CDS 40.0%
GCTGTCATATATGGTGAACT+TGG - chr5_1:10217213-10217232 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG + chr5_1:10217249-10217268 Msa0716740:CDS 40.0%
TGAGGAAAAGATGTAGGAGT+TGG - chr5_1:10217446-10217465 None:intergenic 40.0%
TTGAGTACCAGAGACTCAAA+TGG - chr5_1:10217581-10217600 None:intergenic 40.0%
TCAAAAACAAGTCTCCCAGA+TGG + chr5_1:10217597-10217616 Msa0716740:CDS 40.0%
ATGCTGGTGCCTAAATTTCA+AGG + chr5_1:10217634-10217653 Msa0716740:CDS 40.0%
TGCTGGTGCCTAAATTTCAA+GGG + chr5_1:10217635-10217654 Msa0716740:CDS 40.0%
TAACACGGCCCTTGAAATTT+AGG - chr5_1:10217646-10217665 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG - chr5_1:10217661-10217680 None:intergenic 40.0%
GCAGGAGAAACATTATGAGA+TGG - chr5_1:10217713-10217732 None:intergenic 40.0%
GAGAAGGTTATCTTGCAGTT+TGG + chr5_1:10217740-10217759 Msa0716740:CDS 40.0%
AATACTAACGACCGATTGTC+AGG - chr5_1:10217966-10217985 None:intergenic 40.0%
AGGGCTATAGAATGACATAC+AGG - chr5_1:10218024-10218043 None:intergenic 40.0%
CATGTGTGGTGAGAAATACA+AGG - chr5_1:10218108-10218127 None:intergenic 40.0%
CTTGTATTTCTCACCACACA+TGG + chr5_1:10218106-10218125 Msa0716740:three_prime_UTR 40.0%
!! GAAGGAGGCGTTGAAAATTC+CGG - chr5_1:10214613-10214632 None:intergenic 45.0%
AGCTGTTAAGGAGATGAAGG+AGG - chr5_1:10214628-10214647 None:intergenic 45.0%
GAACCAAATCGGAGAAACAG+AGG - chr5_1:10214674-10214693 None:intergenic 45.0%
! GTCGTTGAGAAGCATAGTAC+GGG + chr5_1:10215399-10215418 Msa0716740:CDS 45.0%
AAGCATAGTACGGGAACTCA+AGG + chr5_1:10215408-10215427 Msa0716740:CDS 45.0%
AACTCAAGGAGATGAGGGAT+GGG + chr5_1:10215422-10215441 Msa0716740:CDS 45.0%
! ATGGGATTGGTAATACGTCG+AGG + chr5_1:10215440-10215459 Msa0716740:CDS 45.0%
! ATTGGTAATACGTCGAGGAG+AGG + chr5_1:10215445-10215464 Msa0716740:CDS 45.0%
AACCTATTCAGCAGGGACAA+TGG + chr5_1:10215539-10215558 Msa0716740:CDS 45.0%
ACCTATTCAGCAGGGACAAT+GGG + chr5_1:10215540-10215559 Msa0716740:CDS 45.0%
TAGAAGAGACCGAGACTTCT+TGG + chr5_1:10215605-10215624 Msa0716740:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG - chr5_1:10215709-10215728 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG - chr5_1:10215710-10215729 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG - chr5_1:10215876-10215895 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG + chr5_1:10215875-10215894 Msa0716740:CDS 45.0%
GACAAAAAAAGGAAGGGAGG+CGG + chr5_1:10216546-10216565 Msa0716740:intron 45.0%
ACAAAAAAAGGAAGGGAGGC+GGG + chr5_1:10216547-10216566 Msa0716740:intron 45.0%
CTAAAATCCGACAGCCTCTA+GGG - chr5_1:10216639-10216658 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG - chr5_1:10216640-10216659 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG + chr5_1:10216840-10216859 Msa0716740:intron 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG - chr5_1:10217005-10217024 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG - chr5_1:10217222-10217241 None:intergenic 45.0%
AATGAAATCTCCTGCTGGAC+CGG - chr5_1:10217271-10217290 None:intergenic 45.0%
CCTAGAATGAAATCTCCTGC+TGG - chr5_1:10217276-10217295 None:intergenic 45.0%
CCAGCAGGAGATTTCATTCT+AGG + chr5_1:10217273-10217292 Msa0716740:CDS 45.0%
CAGGAGATTTCATTCTAGGC+AGG + chr5_1:10217277-10217296 Msa0716740:CDS 45.0%
TAGTTACACGCTGGAACTCT+TGG - chr5_1:10217308-10217327 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG + chr5_1:10217354-10217373 Msa0716740:CDS 45.0%
TATACCTGTCTCAGCTGTTC+AGG + chr5_1:10217406-10217425 Msa0716740:CDS 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG - chr5_1:10217503-10217522 None:intergenic 45.0%
ATAACCTTCTCTTGCTCTGC+AGG - chr5_1:10217731-10217750 None:intergenic 45.0%
TCAAGCATATCGCAAAGGCT+TGG - chr5_1:10217820-10217839 None:intergenic 45.0%
CATGGATCTCATTCACATGC+TGG - chr5_1:10217860-10217879 None:intergenic 45.0%
CAGCATGTGAATGAGATCCA+TGG + chr5_1:10217858-10217877 Msa0716740:exon 45.0%
!! AAACCAGCGGACTATAACCA+TGG - chr5_1:10217878-10217897 None:intergenic 45.0%
ACAACAGCAATACCCATGTG+TGG - chr5_1:10218122-10218141 None:intergenic 45.0%
CGGAATGGTGTGGCATGAAT+CGG - chr5_1:10214534-10214553 None:intergenic 50.0%
CGATTCATGCCACACCATTC+CGG + chr5_1:10214532-10214551 Msa0716740:five_prime_UTR 50.0%
! AATGGATTCCGCAACCGGAA+TGG - chr5_1:10214549-10214568 None:intergenic 50.0%
!! GCGGAATCCATTTTTCACGG+CGG + chr5_1:10214557-10214576 Msa0716740:five_prime_UTR 50.0%
!! TCCATTTTTCACGGCGGTGT+TGG + chr5_1:10214563-10214582 Msa0716740:five_prime_UTR 50.0%
ACCAACACCGCCGTGAAAAA+TGG - chr5_1:10214567-10214586 None:intergenic 50.0%
!! ATTTTTCACGGCGGTGTTGG+TGG + chr5_1:10214566-10214585 Msa0716740:five_prime_UTR 50.0%
CAGAGGCAGAAAAACACGGA+GGG - chr5_1:10214657-10214676 None:intergenic 50.0%
ACAGAGGCAGAAAAACACGG+AGG - chr5_1:10214658-10214677 None:intergenic 50.0%
! CTGCCTCTGTTTCTCCGATT+TGG + chr5_1:10214668-10214687 Msa0716740:five_prime_UTR 50.0%
TACGGGAACTCAAGGAGATG+AGG + chr5_1:10215416-10215435 Msa0716740:CDS 50.0%
ACGGGAACTCAAGGAGATGA+GGG + chr5_1:10215417-10215436 Msa0716740:CDS 50.0%
GAACTCAAGGAGATGAGGGA+TGG + chr5_1:10215421-10215440 Msa0716740:CDS 50.0%
AAGGAGATGAGGGATGGGAT+TGG + chr5_1:10215427-10215446 Msa0716740:CDS 50.0%
TAATACGTCGAGGAGAGGTG+TGG + chr5_1:10215450-10215469 Msa0716740:CDS 50.0%
CAAGTAGGCATTCACAGCGT+CGG + chr5_1:10215473-10215492 Msa0716740:CDS 50.0%
CACTGTATCGGAGAATCACG+AGG - chr5_1:10215864-10215883 None:intergenic 50.0%
CTCCGATACAGTGCTTCATC+AGG + chr5_1:10215871-10215890 Msa0716740:CDS 50.0%
CGATACAGTGCTTCATCAGG+AGG + chr5_1:10215874-10215893 Msa0716740:CDS 50.0%
ATCGGTTGAGGTGTATCCAC+AGG - chr5_1:10216859-10216878 None:intergenic 50.0%
CGTTCCAGCAATGCGTATGT+TGG + chr5_1:10217067-10217086 Msa0716740:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG + chr5_1:10217224-10217243 Msa0716740:CDS 50.0%
GCGGAGAACATTCAGCTCAT+AGG - chr5_1:10217348-10217367 None:intergenic 50.0%
CTGAATGTTCTCCGCACTAG+AGG + chr5_1:10217353-10217372 Msa0716740:CDS 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG + chr5_1:10217411-10217430 Msa0716740:CDS 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG + chr5_1:10217412-10217431 Msa0716740:CDS 50.0%
TGCAGCTGTTCATGCCATCT+GGG - chr5_1:10217614-10217633 None:intergenic 50.0%
TTGCAGCTGTTCATGCCATC+TGG - chr5_1:10217615-10217634 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG + chr5_1:10217649-10217668 Msa0716740:CDS 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG + chr5_1:10217724-10217743 Msa0716740:CDS 50.0%
GGAAGGCAGAGAGTGGATAA+CGG - chr5_1:10217799-10217818 None:intergenic 50.0%
GCATATCGCAAAGGCTTGGA+AGG - chr5_1:10217816-10217835 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG - chr5_1:10217825-10217844 None:intergenic 50.0%
GATCCATGGTTATAGTCCGC+TGG + chr5_1:10217872-10217891 Msa0716740:three_prime_UTR 50.0%
GTGAGATGCAGCCTGACAAT+CGG + chr5_1:10217952-10217971 Msa0716740:three_prime_UTR 50.0%
ATGCCACACCATTCCGGTTG+CGG + chr5_1:10214538-10214557 Msa0716740:five_prime_UTR 55.0%
ATTCCGCAACCGGAATGGTG+TGG - chr5_1:10214544-10214563 None:intergenic 55.0%
TTCCGGCGAAAACCCGAAGA+GGG - chr5_1:10214596-10214615 None:intergenic 55.0%
ATTCCGGCGAAAACCCGAAG+AGG - chr5_1:10214597-10214616 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG - chr5_1:10215544-10215563 None:intergenic 55.0%
ACGTGCAGGCCAAGAAGTCT+CGG - chr5_1:10215617-10215636 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG - chr5_1:10215631-10215650 None:intergenic 55.0%
GTTCAGACTCCCGAAGAGTG+TGG + chr5_1:10215697-10215716 Msa0716740:CDS 55.0%
ATCGGAGAATCACGAGGACC+CGG - chr5_1:10215858-10215877 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG + chr5_1:10216622-10216641 Msa0716740:intron 55.0%
TGTATTCCAGCTCCGTGTGG+AGG - chr5_1:10217239-10217258 None:intergenic 55.0%
GGTTGTATTCCAGCTCCGTG+TGG - chr5_1:10217242-10217261 None:intergenic 55.0%
AACCAAATAGCCGGTCCAGC+AGG + chr5_1:10217258-10217277 Msa0716740:CDS 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG - chr5_1:10217367-10217386 None:intergenic 55.0%
CCTTCCTGAACAGCTGAGAC+AGG - chr5_1:10217413-10217432 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG + chr5_1:10217410-10217429 Msa0716740:CDS 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG + chr5_1:10217413-10217432 Msa0716740:CDS 55.0%
TTCAACCCTCGCAGAGTTGC+CGG + chr5_1:10217541-10217560 Msa0716740:CDS 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG + chr5_1:10217555-10217574 Msa0716740:CDS 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG - chr5_1:10217563-10217582 None:intergenic 55.0%
CCAGAGACTCAAATGGCCCT+TGG - chr5_1:10217574-10217593 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG + chr5_1:10217571-10217590 Msa0716740:CDS 55.0%
GGCATGAACAGCTGCAATGC+TGG + chr5_1:10217618-10217637 Msa0716740:CDS 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG - chr5_1:10217806-10217825 None:intergenic 55.0%
!! TTTCACGGCGGTGTTGGTGG+CGG + chr5_1:10214569-10214588 Msa0716740:five_prime_UTR 60.0%
!! TGTTGGTGGCGGACCCTCTT+CGG + chr5_1:10214580-10214599 Msa0716740:five_prime_UTR 60.0%
!! GACCCTCTTCGGGTTTTCGC+CGG + chr5_1:10214591-10214610 Msa0716740:five_prime_UTR 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG + chr5_1:10215458-10215477 Msa0716740:CDS 60.0%
AAGGAAGGGAGGCGGGAGTA+TGG + chr5_1:10216554-10216573 Msa0716740:intron 60.0%
! AGGAAGGGAGGCGGGAGTAT+GGG + chr5_1:10216555-10216574 Msa0716740:intron 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG - chr5_1:10216631-10216650 None:intergenic 60.0%
CGGTTCACCCTAGAGGCTGT+CGG + chr5_1:10216629-10216648 Msa0716740:intron 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG - chr5_1:10217235-10217254 None:intergenic 60.0%
CTCCTGCTGGACCGGCTATT+TGG - chr5_1:10217263-10217282 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG + chr5_1:10217491-10217510 Msa0716740:CDS 60.0%
CTGAACCGGCAACTCTGCGA+GGG - chr5_1:10217549-10217568 None:intergenic 60.0%
TCTGAACCGGCAACTCTGCG+AGG - chr5_1:10217550-10217569 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG + chr5_1:10217554-10217573 Msa0716740:CDS 60.0%
!! GTTGGTGGCGGACCCTCTTC+GGG + chr5_1:10214581-10214600 Msa0716740:five_prime_UTR 65.0%
AGCCAACCTCCACACGGAGC+TGG + chr5_1:10217230-10217249 Msa0716740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 10214454 10218144 10214454 ID=Msa0716740;Name=Msa0716740
chr5_1 mRNA 10214454 10218144 10214454 ID=Msa0716740-mRNA-1;Parent=Msa0716740;Name=Msa0716740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=381|1|1|1|0.75|0.6|5|273|416
chr5_1 exon 10214454 10214796 10214454 ID=Msa0716740-mRNA-1:exon:4111;Parent=Msa0716740-mRNA-1
chr5_1 exon 10215359 10215750 10215359 ID=Msa0716740-mRNA-1:exon:4112;Parent=Msa0716740-mRNA-1
chr5_1 exon 10215855 10215942 10215855 ID=Msa0716740-mRNA-1:exon:4113;Parent=Msa0716740-mRNA-1
chr5_1 exon 10216969 10217098 10216969 ID=Msa0716740-mRNA-1:exon:4114;Parent=Msa0716740-mRNA-1
chr5_1 exon 10217193 10218144 10217193 ID=Msa0716740-mRNA-1:exon:4115;Parent=Msa0716740-mRNA-1
chr5_1 five_prime_UTR 10214454 10214796 10214454 ID=Msa0716740-mRNA-1:five_prime_utr;Parent=Msa0716740-mRNA-1
chr5_1 five_prime_UTR 10215359 10215396 10215359 ID=Msa0716740-mRNA-1:five_prime_utr;Parent=Msa0716740-mRNA-1
chr5_1 CDS 10215397 10215750 10215397 ID=Msa0716740-mRNA-1:cds;Parent=Msa0716740-mRNA-1
chr5_1 CDS 10215855 10215942 10215855 ID=Msa0716740-mRNA-1:cds;Parent=Msa0716740-mRNA-1
chr5_1 CDS 10216969 10217098 10216969 ID=Msa0716740-mRNA-1:cds;Parent=Msa0716740-mRNA-1
chr5_1 CDS 10217193 10217871 10217193 ID=Msa0716740-mRNA-1:cds;Parent=Msa0716740-mRNA-1
chr5_1 three_prime_UTR 10217872 10218144 10217872 ID=Msa0716740-mRNA-1:three_prime_utr;Parent=Msa0716740-mRNA-1
Gene Sequence

>Msa0716740

ATGTCGTTGAGAAGCATAGTACGGGAACTCAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACTATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAGCATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>Msa0716740

MSLRSIVRELKEMRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*