AlfalfaGEDB | Msa0897950

M. sativa cultivar zhongmu-4 / Msa0897950

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897950	XP_013452962.1	74.694	245	60	2	3	247	21	263	1.19e-116	358

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897950	sp\|Q8VYG0\|LRL13_ARATH	31.122	196	121	8	37	230	42	225	4.57e-17	83.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897950	A0A072UMB2	74.694	245	60	2	3	247	21	263	5.70e-117	358

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0533430	Msa0897950	0.843406	1.428703e-58	-8.615850e-47
Msa0580610	Msa0897950	0.809933	1.481112e-50	-8.615850e-47
Msa0815320	Msa0897950	0.819643	1.042669e-52	-8.615850e-47
Msa0818010	Msa0897950	0.843798	1.122391e-58	-8.615850e-47
Msa0884920	Msa0897950	0.811279	7.581662e-51	-8.615850e-47
Msa0897950	Msa0912500	0.806970	6.349731e-50	-8.615850e-47
Msa0897950	Msa1006250	0.849937	2.345409e-60	-8.615850e-47
Msa0897950	Msa1006390	0.800972	1.121457e-48	-8.615850e-47
Msa0897950	Msa1359820	0.803175	3.952335e-49	-8.615850e-47
Msa0897950	Msa1444370	0.807242	5.561583e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897950	MtrunA17_Chr6g0483821	74.694	245	60	2	3	247	21	263	1.10e-120	358
Msa0897950	MtrunA17_Chr6g0483931	69.600	250	65	5	3	247	21	264	3.24e-116	347
Msa0897950	MtrunA17_Chr6g0467631	57.529	259	84	7	3	247	9	255	8.70e-89	276
Msa0897950	MtrunA17_Chr6g0484051	57.917	240	93	5	10	247	23	256	2.28e-86	269
Msa0897950	MtrunA17_Chr6g0484061	54.000	250	87	7	3	247	16	242	3.63e-77	234
Msa0897950	MtrunA17_Chr6g0483901	53.846	221	87	5	1	216	18	228	9.84e-75	228
Msa0897950	MtrunA17_Chr8g0391231	34.615	234	123	9	17	235	19	237	3.13e-28	112
Msa0897950	MtrunA17_Chr6g0484081	54.255	94	35	4	14	102	21	111	5.45e-24	93.2
Msa0897950	MtrunA17_Chr6g0467591	58.824	68	26	1	3	68	28	95	3.07e-21	85.5
Msa0897950	MtrunA17_Chr8g0376061	32.663	199	115	7	37	225	36	225	3.33e-20	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897950	AT5G38210.1	31.122	196	121	8	37	230	42	225	4.64e-18	83.6
Msa0897950	AT5G38250.1	33.500	200	105	9	37	225	41	223	1.31e-17	82.0
Msa0897950	AT1G66940.1	32.105	190	115	6	37	222	37	216	8.89e-17	78.6
Msa0897950	AT1G66940.4	32.105	190	115	6	37	222	37	216	2.50e-16	77.8
Msa0897950	AT1G66940.2	32.105	190	115	6	37	222	37	216	2.81e-16	77.0
Msa0897950	AT1G66940.3	32.105	190	115	6	37	222	37	216	2.81e-16	77.0
Msa0897950	AT1G66880.1	32.984	191	115	7	36	225	23	201	1.59e-15	76.3
Msa0897950	AT1G66880.1	27.861	201	131	7	37	236	416	603	7.04e-15	74.3
Msa0897950	AT1G66880.3	28.293	205	131	9	34	236	34	224	6.31e-15	74.3
Msa0897950	AT1G66880.2	27.451	204	134	7	34	236	34	224	6.48e-15	74.3

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Find 36 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGTATCATTAAACTG+AGG	0.720599	6_1:-90580968	None:intergenic
AACATCTCTTATCCATTCTG+GGG	0.658842	6_1:+90580773	Msa0897950:CDS
AATACAGTGATGTTGTTGAC+AGG	0.559763	6_1:-90581019	None:intergenic
AATCATGCTTTCTATACTGT+TGG	0.505252	6_1:+90581097	Msa0897950:CDS
ACAGGAAAATCTGTTCCTAC+TGG	0.556182	6_1:-90581175	None:intergenic
ACAGTATAGAAAGCATGATT+TGG	0.365556	6_1:-90581094	None:intergenic
ACTGATTGTGGTAGTTTCTG+TGG	0.503964	6_1:-90580692	None:intergenic
AGAAGAATGCTTAAGGTGTT+TGG	0.278443	6_1:+90581285	Msa0897950:CDS
AGACATATTCAAGTGCCAGT+AGG	0.655294	6_1:+90581160	Msa0897950:CDS
AGGTGTTTGGGAAGTGAAGG+AGG	0.495202	6_1:+90581298	Msa0897950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAACATAGAAGTCAAGTT+TGG	-	chr6_1:90579330-90579349	None:intergenic	30.0%
AACTTGACTTCTATGTTACT+TGG	+	chr6_1:90579330-90579349	Msa0897950:intron	30.0%
ATGATCATGAAACCTTGAAT+TGG	-	chr6_1:90579495-90579514	None:intergenic	30.0%
TCAAGGTTTCATGATCATAT+AGG	+	chr6_1:90579497-90579516	Msa0897950:intron	30.0%
TGATACTTCAAAGTGATAAG+TGG	+	chr6_1:90579734-90579753	Msa0897950:intron	30.0%
CTTCTTTACTTATGCATTTC+AGG	-	chr6_1:90579822-90579841	None:intergenic	30.0%
CTGAAATGCATAAGTAAAGA+AGG	+	chr6_1:90579820-90579839	Msa0897950:intron	30.0%
AGAGAGAAATATAGTAAGGA+AGG	+	chr6_1:90579862-90579881	Msa0897950:intron	30.0%
AATCGCTTAAGCCTAATTAT+TGG	+	chr6_1:90580387-90580406	Msa0897950:intron	30.0%
ATCGCTTAAGCCTAATTATT+GGG	+	chr6_1:90580388-90580407	Msa0897950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	90579232	90581393	90579232	ID=Msa0897950;Name=Msa0897950
chr6_1	mRNA	90579232	90581393	90579232	ID=Msa0897950-mRNA-1;Parent=Msa0897950;Name=Msa0897950-mRNA-1;_AED=0.39;_eAED=0.41;_QI=0\|0\|0\|1\|0\|0\|2\|0\|249
chr6_1	exon	90579232	90579238	90579232	ID=Msa0897950-mRNA-1:exon:15418;Parent=Msa0897950-mRNA-1
chr6_1	exon	90580651	90581393	90580651	ID=Msa0897950-mRNA-1:exon:15419;Parent=Msa0897950-mRNA-1
chr6_1	CDS	90579232	90579238	90579232	ID=Msa0897950-mRNA-1:cds;Parent=Msa0897950-mRNA-1
chr6_1	CDS	90580651	90581393	90580651	ID=Msa0897950-mRNA-1:cds;Parent=Msa0897950-mRNA-1

Gene Sequence

>Msa0897950

ATGAATCTAATAATAACTACTTTTTTTCCACATCAATCGCACTCTCAGCCACAGAAACTACCACAATCAGTTAACGATTATTCCACTTGTAGAGACATACAAAACTCCTATAACTGTGGACATATCACCAACATCTCTTATCCATTCTGGGGAGAAAATCGTCCTTTTCGTTGTGGTGCTGGCAACCCTTATCACCTTTACTGCCACAACAACCAAAATACTACCATTTTGTTATCTTCACAAAATTTCACAGTACTTGACATCAACATAGAAAAACACACCATCAAACTCAAAAGAACAGACCTTGATCAAAATCTTTGTTCTCCTCAGTTTAATGATACTTATTTGTTTCCACCTCTGTTTCAATATCTTCAACCTGTCAACAACATCACTGTATTCTACAATTGTACTCCATCTCCTTTTTCACCTGAAAAATCTTTATGTGAATTTCCAAATCATGCTTTCTATACTGTTGGTGATGAAGATAAGTTGTTGGAAGAATCAAGGAATTGCAAGAGACATATTCAAGTGCCAGTAGGAACAGATTTTCCTGTTGTGAAAGATGATTATTATGATTATTTTGATCATGATTTTCTTGAAAATGGTTTGCATAAGGGGTTTGAGTTGAATTATAATCTGAAAGAAGAATGCTTAAGGTGTTTGGGAAGTGAAGGAGGAGATTGTAAATGGAAAACCAATGATGCTATTGAGAAACATGTAAAGTCCACTTGCTATTACGATTTACGATGA

Protein sequence

>Msa0897950

MNLIITTFFPHQSHSQPQKLPQSVNDYSTCRDIQNSYNCGHITNISYPFWGENRPFRCGAGNPYHLYCHNNQNTTILLSSQNFTVLDINIEKHTIKLKRTDLDQNLCSPQFNDTYLFPPLFQYLQPVNNITVFYNCTPSPFSPEKSLCEFPNHAFYTVGDEDKLLEESRNCKRHIQVPVGTDFPVVKDDYYDYFDHDFLENGLHKGFELNYNLKEECLRCLGSEGGDCKWKTNDAIEKHVKSTCYYDLR*