Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899250 | XP_024630907.1 | 91.156 | 294 | 10 | 1 | 1 | 278 | 95 | 388 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899250 | A0A396JV57 | 91.156 | 294 | 10 | 1 | 1 | 278 | 95 | 388 | 0.0 | 538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0452900 | Msa0899250 | 0.811679 | 6.204092e-51 | -8.615850e-47 |
| Msa0267010 | Msa0899250 | 0.807262 | 5.508154e-50 | -8.615850e-47 |
| Msa0899250 | Msa0979850 | 0.851241 | 1.008904e-60 | -8.615850e-47 |
| Msa0899250 | Msa1025360 | 0.814448 | 1.532610e-51 | -8.615850e-47 |
| Msa0899250 | Msa1025370 | 0.803940 | 2.742880e-49 | -8.615850e-47 |
| Msa0899250 | Msa1044830 | 0.806746 | 7.083039e-50 | -8.615850e-47 |
| Msa0899250 | Msa1044840 | 0.813681 | 2.263437e-51 | -8.615850e-47 |
| Msa0899250 | Msa1287810 | 0.819914 | 9.041162e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899250 | MtrunA17_Chr1g0207391 | 91.156 | 294 | 10 | 1 | 1 | 278 | 95 | 388 | 0.0 | 538 |
| Msa0899250 | MtrunA17_Chr8g0391981 | 44.043 | 277 | 140 | 3 | 5 | 268 | 88 | 362 | 2.04e-76 | 238 |
| Msa0899250 | MtrunA17_Chr7g0226311 | 43.173 | 271 | 133 | 3 | 1 | 252 | 16 | 284 | 4.07e-72 | 225 |
| Msa0899250 | MtrunA17_Chr6g0477141 | 42.857 | 273 | 138 | 3 | 5 | 259 | 151 | 423 | 2.07e-68 | 219 |
| Msa0899250 | MtrunA17_Chr6g0478531 | 42.804 | 271 | 138 | 2 | 5 | 259 | 49 | 318 | 1.25e-65 | 210 |
| Msa0899250 | MtrunA17_Chr1g0172731 | 33.544 | 316 | 177 | 8 | 1 | 286 | 73 | 385 | 1.11e-52 | 177 |
| Msa0899250 | MtrunA17_Chr1g0190171 | 33.544 | 316 | 177 | 8 | 1 | 286 | 73 | 385 | 1.32e-52 | 176 |
| Msa0899250 | MtrunA17_Chr1g0182341 | 29.268 | 287 | 149 | 4 | 1 | 259 | 67 | 327 | 7.27e-36 | 132 |
| Msa0899250 | MtrunA17_Chr4g0018411 | 51.579 | 95 | 42 | 3 | 160 | 252 | 9 | 101 | 2.39e-25 | 98.6 |
| Msa0899250 | MtrunA17_Chr2g0321401 | 30.319 | 188 | 104 | 6 | 1 | 163 | 72 | 257 | 9.19e-22 | 92.0 |
| Msa0899250 | MtrunA17_Chr2g0285471 | 29.787 | 188 | 105 | 6 | 1 | 163 | 4 | 189 | 9.45e-22 | 90.5 |
| Msa0899250 | MtrunA17_Chr8g0334561 | 29.787 | 188 | 105 | 6 | 1 | 163 | 73 | 258 | 1.58e-19 | 85.9 |
| Msa0899250 | MtrunA17_Chr7g0267201 | 29.375 | 160 | 87 | 1 | 1 | 134 | 1 | 160 | 2.43e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899250 | AT5G35695.1 | 71.528 | 144 | 29 | 2 | 127 | 268 | 25 | 158 | 6.70e-67 | 207 |
| Msa0899250 | AT5G41980.1 | 39.630 | 270 | 143 | 2 | 1 | 259 | 48 | 308 | 3.61e-57 | 188 |
| Msa0899250 | AT1G43722.1 | 33.469 | 245 | 136 | 4 | 6 | 224 | 77 | 320 | 9.06e-36 | 130 |
| Msa0899250 | AT5G28950.1 | 68.354 | 79 | 24 | 1 | 80 | 157 | 20 | 98 | 6.48e-30 | 110 |
| Msa0899250 | AT3G30525.1 | 34.524 | 168 | 103 | 3 | 89 | 250 | 1 | 167 | 1.91e-27 | 105 |
| Msa0899250 | AT5G28730.1 | 32.258 | 217 | 134 | 4 | 1 | 212 | 30 | 238 | 6.67e-21 | 90.5 |
| Msa0899250 | AT4G10890.3 | 36.264 | 91 | 56 | 2 | 138 | 227 | 71 | 160 | 5.21e-12 | 66.2 |
| Msa0899250 | AT4G10890.1 | 36.264 | 91 | 56 | 2 | 138 | 227 | 71 | 160 | 5.21e-12 | 66.2 |
| Msa0899250 | AT4G10890.2 | 36.264 | 91 | 56 | 2 | 138 | 227 | 71 | 160 | 5.21e-12 | 66.2 |
| Msa0899250 | AT3G55350.1 | 23.755 | 261 | 152 | 8 | 25 | 252 | 109 | 355 | 1.24e-11 | 65.1 |
Find 41 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCGCCATGCGTCTTTA+AGG | 0.097197 | 6_1:-94209283 | Msa0899250:CDS |
| TTATACAATATCGAGCATTT+TGG | 0.240408 | 6_1:+94210004 | None:intergenic |
| GTTGGTTTAGCCATCAAATA+AGG | 0.314488 | 6_1:+94209901 | None:intergenic |
| AATGTGGTTGAGAGAATATT+TGG | 0.317602 | 6_1:-94209260 | Msa0899250:CDS |
| CTCAATAGCACCTTATTTGA+TGG | 0.328190 | 6_1:-94209911 | Msa0899250:CDS |
| TCATTATCGTCTTCATGAAT+AGG | 0.341261 | 6_1:+94209040 | None:intergenic |
| AGCTGCTTGTAATTTCGATT+TGG | 0.365004 | 6_1:-94209622 | Msa0899250:CDS |
| CAAAGCATCATTTAGCAACT+TGG | 0.377464 | 6_1:+94209554 | None:intergenic |
| CATTTAGCAACTTGGAATCA+TGG | 0.400539 | 6_1:+94209562 | None:intergenic |
| TGTATAATTAGAAATACATT+TGG | 0.402713 | 6_1:-94209988 | Msa0899250:CDS |
| GATTGCAATGGAGCTATTGA+TGG | 0.420584 | 6_1:-94209726 | Msa0899250:CDS |
| GCGTCGTTCTTACAGATTGT+CGG | 0.432319 | 6_1:-94210027 | Msa0899250:CDS |
| GACTCGTTAGAATGTTCAAC+TGG | 0.440308 | 6_1:+94209107 | None:intergenic |
| TTTGGCCGATCACAATTTGC+TGG | 0.457609 | 6_1:-94209970 | Msa0899250:CDS |
| CATAAATTTCGAAAGACATC+AGG | 0.460234 | 6_1:+94210114 | None:intergenic |
| CATATTCCTGCATTGGTAAG+AGG | 0.460409 | 6_1:-94209699 | Msa0899250:CDS |
| GGTAACATTGAAGATGAAGA+TGG | 0.471411 | 6_1:+94209061 | None:intergenic |
| TGCTAAATGATGCTTTGAAA+AGG | 0.482649 | 6_1:-94209548 | Msa0899250:CDS |
| GATGCTTTGAAAAGGAAGAA+TGG | 0.484883 | 6_1:-94209540 | Msa0899250:CDS |
| ATTTAGCAACTTGGAATCAT+GGG | 0.505901 | 6_1:+94209563 | None:intergenic |
| AGTTCATGTACGTTCTTAGC+GGG | 0.515243 | 6_1:-94209599 | Msa0899250:CDS |
| TACTTCCAGCAAATTGTGAT+CGG | 0.517348 | 6_1:+94209965 | None:intergenic |
| TCATGTACGTTCTTAGCGGG+TGG | 0.518115 | 6_1:-94209596 | Msa0899250:CDS |
| TTTGCAGGCACACTTGAGGT+TGG | 0.522108 | 6_1:+94209883 | None:intergenic |
| CATGTACGTTCTTAGCGGGT+GGG | 0.528431 | 6_1:-94209595 | Msa0899250:CDS |
| TCTCGTCCTCTTACCAATGC+AGG | 0.530406 | 6_1:+94209693 | None:intergenic |
| TAATGACCCTGAAAATGAAA+AGG | 0.542906 | 6_1:-94209315 | Msa0899250:CDS |
| GTACGTTCTTAGCGGGTGGG+AGG | 0.544285 | 6_1:-94209592 | Msa0899250:CDS |
| GAGTTCATGTACGTTCTTAG+CGG | 0.544979 | 6_1:-94209600 | Msa0899250:CDS |
| TACGTTCTTAGCGGGTGGGA+GGG | 0.546796 | 6_1:-94209591 | Msa0899250:CDS |
| CCATGCGTCTTTAAGGAATG+TGG | 0.547141 | 6_1:-94209276 | Msa0899250:CDS |
| GTAACATTGAAGATGAAGAT+GGG | 0.554860 | 6_1:+94209062 | None:intergenic |
| GACACAAGCAGAACTTGTGT+TGG | 0.559273 | 6_1:-94209183 | Msa0899250:CDS |
| TGGTACACATATTCCTGCAT+TGG | 0.559514 | 6_1:-94209706 | Msa0899250:CDS |
| ATGTTCAACTGGAAATTCAT+CGG | 0.590852 | 6_1:+94209118 | None:intergenic |
| AGCAGTTATCGTGATCGTCA+TGG | 0.601808 | 6_1:-94209666 | Msa0899250:CDS |
| ATAAATCTTGTATCCACCAA+AGG | 0.606437 | 6_1:+94210069 | None:intergenic |
| CCACATTCCTTAAAGACGCA+TGG | 0.616159 | 6_1:+94209276 | None:intergenic |
| GTTATCGTGATCGTCATGGA+AGG | 0.625280 | 6_1:-94209662 | Msa0899250:CDS |
| TGATATCGCACACCTCGATG+TGG | 0.650124 | 6_1:+94209362 | None:intergenic |
| AATGGACTAAAAGTGCCCCA+CGG | 0.730602 | 6_1:-94209522 | Msa0899250:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATAATAATTTTTTA+TGG | - | chr6_1:94209401-94209420 | Msa0899250:CDS | 0.0% |
| !!! | TTTATTATAATAATTTTTTA+TGG | - | chr6_1:94209401-94209420 | Msa0899250:CDS | 0.0% |
| !!! | TTATATATAAACAAACTTTT+AGG | - | chr6_1:94209424-94209443 | Msa0899250:intron | 10.0% |
| !! | TATGTATTGTAAATTTAATT+AGG | - | chr6_1:94209735-94209754 | Msa0899250:intron | 10.0% |
| !!! | TTATATATAAACAAACTTTT+AGG | - | chr6_1:94209424-94209443 | Msa0899250:intron | 10.0% |
| !! | TATGTATTGTAAATTTAATT+AGG | - | chr6_1:94209735-94209754 | Msa0899250:intron | 10.0% |
| !! | TGTATAATTAGAAATACATT+TGG | - | chr6_1:94209184-94209203 | Msa0899250:CDS | 15.0% |
| !!! | TTAATTAGGTAAATATTTTC+TGG | - | chr6_1:94209749-94209768 | Msa0899250:intron | 15.0% |
| !! | TGTATAATTAGAAATACATT+TGG | - | chr6_1:94209184-94209203 | Msa0899250:CDS | 15.0% |
| !!! | TTAATTAGGTAAATATTTTC+TGG | - | chr6_1:94209749-94209768 | Msa0899250:intron | 15.0% |
| !!! | AAATTTTCACAAGATTTTGA+AGG | - | chr6_1:94209231-94209250 | Msa0899250:CDS | 20.0% |
| !! | AAAAATTAATTACTTACCGT+GGG | + | chr6_1:94209669-94209688 | None:intergenic | 20.0% |
| !! | TAAAAATTAATTACTTACCG+TGG | + | chr6_1:94209670-94209689 | None:intergenic | 20.0% |
| !!! | AAATTTTCACAAGATTTTGA+AGG | - | chr6_1:94209231-94209250 | Msa0899250:CDS | 20.0% |
| !! | AAAAATTAATTACTTACCGT+GGG | + | chr6_1:94209669-94209688 | None:intergenic | 20.0% |
| !! | TAAAAATTAATTACTTACCG+TGG | + | chr6_1:94209670-94209689 | None:intergenic | 20.0% |
| ! | TATAAGAGAAAAAACACCTT+TGG | - | chr6_1:94209087-94209106 | Msa0899250:CDS | 25.0% |
| !! | TTATACAATATCGAGCATTT+TGG | + | chr6_1:94209171-94209190 | None:intergenic | 25.0% |
| !! | AAGATTTTATCCTTACTTCA+AGG | - | chr6_1:94209327-94209346 | Msa0899250:CDS | 25.0% |
| ! | AAAATTAATTACTTACCGTG+GGG | + | chr6_1:94209668-94209687 | None:intergenic | 25.0% |
| !! | ATTAGGTAAATATTTTCTGG+TGG | - | chr6_1:94209752-94209771 | Msa0899250:intron | 25.0% |
| !! | ATAACTCCTTTTCATTTTCA+GGG | + | chr6_1:94209866-94209885 | None:intergenic | 25.0% |
| !! | AATAACTCCTTTTCATTTTC+AGG | + | chr6_1:94209867-94209886 | None:intergenic | 25.0% |
| ! | TATAAGAGAAAAAACACCTT+TGG | - | chr6_1:94209087-94209106 | Msa0899250:CDS | 25.0% |
| !! | TTATACAATATCGAGCATTT+TGG | + | chr6_1:94209171-94209190 | None:intergenic | 25.0% |
| !! | AAGATTTTATCCTTACTTCA+AGG | - | chr6_1:94209327-94209346 | Msa0899250:CDS | 25.0% |
| ! | AAAATTAATTACTTACCGTG+GGG | + | chr6_1:94209668-94209687 | None:intergenic | 25.0% |
| !! | ATTAGGTAAATATTTTCTGG+TGG | - | chr6_1:94209752-94209771 | Msa0899250:intron | 25.0% |
| !! | ATAACTCCTTTTCATTTTCA+GGG | + | chr6_1:94209866-94209885 | None:intergenic | 25.0% |
| !! | AATAACTCCTTTTCATTTTC+AGG | + | chr6_1:94209867-94209886 | None:intergenic | 25.0% |
| CATAAATTTCGAAAGACATC+AGG | + | chr6_1:94209061-94209080 | None:intergenic | 30.0% | |
| ATAAATCTTGTATCCACCAA+AGG | + | chr6_1:94209106-94209125 | None:intergenic | 30.0% | |
| !!! | ACAAACTTTTAGGATTGCAA+TGG | - | chr6_1:94209434-94209453 | Msa0899250:intron | 30.0% |
| ATTTAGCAACTTGGAATCAT+GGG | + | chr6_1:94209612-94209631 | None:intergenic | 30.0% | |
| !! | TGCTAAATGATGCTTTGAAA+AGG | - | chr6_1:94209624-94209643 | Msa0899250:CDS | 30.0% |
| !!! | AAATATTTTCTGGTGGATTG+TGG | - | chr6_1:94209759-94209778 | Msa0899250:intron | 30.0% |
| ! | TATCATCTACAAGATTTTGC+AGG | - | chr6_1:94209828-94209847 | Msa0899250:intron | 30.0% |
| TAATGACCCTGAAAATGAAA+AGG | - | chr6_1:94209857-94209876 | Msa0899250:intron | 30.0% | |
| AATGTGGTTGAGAGAATATT+TGG | - | chr6_1:94209912-94209931 | Msa0899250:CDS | 30.0% | |
| TGTGTCTTAAACAAAAATGG+AGG | + | chr6_1:94209975-94209994 | None:intergenic | 30.0% | |
| GCTTGTGTCTTAAACAAAAA+TGG | + | chr6_1:94209978-94209997 | None:intergenic | 30.0% | |
| ATGTTCAACTGGAAATTCAT+CGG | + | chr6_1:94210057-94210076 | None:intergenic | 30.0% | |
| GTAACATTGAAGATGAAGAT+GGG | + | chr6_1:94210091-94210110 | None:intergenic | 30.0% | |
| CATAAATTTCGAAAGACATC+AGG | + | chr6_1:94209061-94209080 | None:intergenic | 30.0% | |
| ATAAATCTTGTATCCACCAA+AGG | + | chr6_1:94209106-94209125 | None:intergenic | 30.0% | |
| !!! | ACAAACTTTTAGGATTGCAA+TGG | - | chr6_1:94209434-94209453 | Msa0899250:intron | 30.0% |
| ATTTAGCAACTTGGAATCAT+GGG | + | chr6_1:94209612-94209631 | None:intergenic | 30.0% | |
| !! | TGCTAAATGATGCTTTGAAA+AGG | - | chr6_1:94209624-94209643 | Msa0899250:CDS | 30.0% |
| !!! | AAATATTTTCTGGTGGATTG+TGG | - | chr6_1:94209759-94209778 | Msa0899250:intron | 30.0% |
| ! | TATCATCTACAAGATTTTGC+AGG | - | chr6_1:94209828-94209847 | Msa0899250:intron | 30.0% |
| TAATGACCCTGAAAATGAAA+AGG | - | chr6_1:94209857-94209876 | Msa0899250:intron | 30.0% | |
| AATGTGGTTGAGAGAATATT+TGG | - | chr6_1:94209912-94209931 | Msa0899250:CDS | 30.0% | |
| TGTGTCTTAAACAAAAATGG+AGG | + | chr6_1:94209975-94209994 | None:intergenic | 30.0% | |
| GCTTGTGTCTTAAACAAAAA+TGG | + | chr6_1:94209978-94209997 | None:intergenic | 30.0% | |
| ATGTTCAACTGGAAATTCAT+CGG | + | chr6_1:94210057-94210076 | None:intergenic | 30.0% | |
| GTAACATTGAAGATGAAGAT+GGG | + | chr6_1:94210091-94210110 | None:intergenic | 30.0% | |
| AAGAGAAAAAACACCTTTGG+TGG | - | chr6_1:94209090-94209109 | Msa0899250:CDS | 35.0% | |
| TACTTCCAGCAAATTGTGAT+CGG | + | chr6_1:94209210-94209229 | None:intergenic | 35.0% | |
| ! | CTCAATAGCACCTTATTTGA+TGG | - | chr6_1:94209261-94209280 | Msa0899250:CDS | 35.0% |
| ! | GTTGGTTTAGCCATCAAATA+AGG | + | chr6_1:94209274-94209293 | None:intergenic | 35.0% |
| AAGTGTGCCTGCAAAAATAA+GGG | - | chr6_1:94209297-94209316 | Msa0899250:CDS | 35.0% | |
| TGATCACATACCTTGAAGTA+AGG | + | chr6_1:94209340-94209359 | None:intergenic | 35.0% | |
| AGCTGCTTGTAATTTCGATT+TGG | - | chr6_1:94209550-94209569 | Msa0899250:CDS | 35.0% | |
| CATTTAGCAACTTGGAATCA+TGG | + | chr6_1:94209613-94209632 | None:intergenic | 35.0% | |
| ! | CAAAGCATCATTTAGCAACT+TGG | + | chr6_1:94209621-94209640 | None:intergenic | 35.0% |
| !! | GATGCTTTGAAAAGGAAGAA+TGG | - | chr6_1:94209632-94209651 | Msa0899250:CDS | 35.0% |
| GGTAACATTGAAGATGAAGA+TGG | + | chr6_1:94210092-94210111 | None:intergenic | 35.0% | |
| AAGAGAAAAAACACCTTTGG+TGG | - | chr6_1:94209090-94209109 | Msa0899250:CDS | 35.0% | |
| TACTTCCAGCAAATTGTGAT+CGG | + | chr6_1:94209210-94209229 | None:intergenic | 35.0% | |
| ! | CTCAATAGCACCTTATTTGA+TGG | - | chr6_1:94209261-94209280 | Msa0899250:CDS | 35.0% |
| ! | GTTGGTTTAGCCATCAAATA+AGG | + | chr6_1:94209274-94209293 | None:intergenic | 35.0% |
| AAGTGTGCCTGCAAAAATAA+GGG | - | chr6_1:94209297-94209316 | Msa0899250:CDS | 35.0% | |
| TGATCACATACCTTGAAGTA+AGG | + | chr6_1:94209340-94209359 | None:intergenic | 35.0% | |
| AGCTGCTTGTAATTTCGATT+TGG | - | chr6_1:94209550-94209569 | Msa0899250:CDS | 35.0% | |
| CATTTAGCAACTTGGAATCA+TGG | + | chr6_1:94209613-94209632 | None:intergenic | 35.0% | |
| ! | CAAAGCATCATTTAGCAACT+TGG | + | chr6_1:94209621-94209640 | None:intergenic | 35.0% |
| !! | GATGCTTTGAAAAGGAAGAA+TGG | - | chr6_1:94209632-94209651 | Msa0899250:CDS | 35.0% |
| GGTAACATTGAAGATGAAGA+TGG | + | chr6_1:94210092-94210111 | None:intergenic | 35.0% | |
| !! | TATTTTTGCAGGCACACTTG+AGG | + | chr6_1:94209296-94209315 | None:intergenic | 40.0% |
| CAAGTGTGCCTGCAAAAATA+AGG | - | chr6_1:94209296-94209315 | Msa0899250:CDS | 40.0% | |
| !!! | GTGCTTTCCCTTATTTTTGC+AGG | + | chr6_1:94209307-94209326 | None:intergenic | 40.0% |
| GATTGCAATGGAGCTATTGA+TGG | - | chr6_1:94209446-94209465 | Msa0899250:intron | 40.0% | |
| TGGTACACATATTCCTGCAT+TGG | - | chr6_1:94209466-94209485 | Msa0899250:intron | 40.0% | |
| ! | CATATTCCTGCATTGGTAAG+AGG | - | chr6_1:94209473-94209492 | Msa0899250:intron | 40.0% |
| GAGTTCATGTACGTTCTTAG+CGG | - | chr6_1:94209572-94209591 | Msa0899250:CDS | 40.0% | |
| AGTTCATGTACGTTCTTAGC+GGG | - | chr6_1:94209573-94209592 | Msa0899250:CDS | 40.0% | |
| CTCGATGTGGAGCTAAAAAT+TGG | + | chr6_1:94209800-94209819 | None:intergenic | 40.0% | |
| !!! | CAATTTTTAGCTCCACATCG+AGG | - | chr6_1:94209798-94209817 | Msa0899250:intron | 40.0% |
| ! | CTACAAGATTTTGCAGGTCA+CGG | - | chr6_1:94209834-94209853 | Msa0899250:intron | 40.0% |
| GACTCGTTAGAATGTTCAAC+TGG | + | chr6_1:94210068-94210087 | None:intergenic | 40.0% | |
| !! | TATTTTTGCAGGCACACTTG+AGG | + | chr6_1:94209296-94209315 | None:intergenic | 40.0% |
| CAAGTGTGCCTGCAAAAATA+AGG | - | chr6_1:94209296-94209315 | Msa0899250:CDS | 40.0% | |
| !!! | GTGCTTTCCCTTATTTTTGC+AGG | + | chr6_1:94209307-94209326 | None:intergenic | 40.0% |
| GATTGCAATGGAGCTATTGA+TGG | - | chr6_1:94209446-94209465 | Msa0899250:intron | 40.0% | |
| TGGTACACATATTCCTGCAT+TGG | - | chr6_1:94209466-94209485 | Msa0899250:intron | 40.0% | |
| ! | CATATTCCTGCATTGGTAAG+AGG | - | chr6_1:94209473-94209492 | Msa0899250:intron | 40.0% |
| GAGTTCATGTACGTTCTTAG+CGG | - | chr6_1:94209572-94209591 | Msa0899250:CDS | 40.0% | |
| AGTTCATGTACGTTCTTAGC+GGG | - | chr6_1:94209573-94209592 | Msa0899250:CDS | 40.0% | |
| CTCGATGTGGAGCTAAAAAT+TGG | + | chr6_1:94209800-94209819 | None:intergenic | 40.0% | |
| !!! | CAATTTTTAGCTCCACATCG+AGG | - | chr6_1:94209798-94209817 | Msa0899250:intron | 40.0% |
| ! | CTACAAGATTTTGCAGGTCA+CGG | - | chr6_1:94209834-94209853 | Msa0899250:intron | 40.0% |
| GACTCGTTAGAATGTTCAAC+TGG | + | chr6_1:94210068-94210087 | None:intergenic | 40.0% | |
| GCGTCGTTCTTACAGATTGT+CGG | - | chr6_1:94209145-94209164 | Msa0899250:CDS | 45.0% | |
| TTTGGCCGATCACAATTTGC+TGG | - | chr6_1:94209202-94209221 | Msa0899250:CDS | 45.0% | |
| AGCAGTTATCGTGATCGTCA+TGG | - | chr6_1:94209506-94209525 | Msa0899250:intron | 45.0% | |
| GTTATCGTGATCGTCATGGA+AGG | - | chr6_1:94209510-94209529 | Msa0899250:intron | 45.0% | |
| !! | AATGGACTAAAAGTGCCCCA+CGG | - | chr6_1:94209650-94209669 | Msa0899250:CDS | 45.0% |
| ATCTTCGCCATGCGTCTTTA+AGG | - | chr6_1:94209889-94209908 | Msa0899250:intron | 45.0% | |
| CCACATTCCTTAAAGACGCA+TGG | + | chr6_1:94209899-94209918 | None:intergenic | 45.0% | |
| ! | CCATGCGTCTTTAAGGAATG+TGG | - | chr6_1:94209896-94209915 | Msa0899250:CDS | 45.0% |
| GACACAAGCAGAACTTGTGT+TGG | - | chr6_1:94209989-94210008 | Msa0899250:CDS | 45.0% | |
| GCGTCGTTCTTACAGATTGT+CGG | - | chr6_1:94209145-94209164 | Msa0899250:CDS | 45.0% | |
| TTTGGCCGATCACAATTTGC+TGG | - | chr6_1:94209202-94209221 | Msa0899250:CDS | 45.0% | |
| AGCAGTTATCGTGATCGTCA+TGG | - | chr6_1:94209506-94209525 | Msa0899250:intron | 45.0% | |
| GTTATCGTGATCGTCATGGA+AGG | - | chr6_1:94209510-94209529 | Msa0899250:intron | 45.0% | |
| !! | AATGGACTAAAAGTGCCCCA+CGG | - | chr6_1:94209650-94209669 | Msa0899250:CDS | 45.0% |
| ATCTTCGCCATGCGTCTTTA+AGG | - | chr6_1:94209889-94209908 | Msa0899250:intron | 45.0% | |
| CCACATTCCTTAAAGACGCA+TGG | + | chr6_1:94209899-94209918 | None:intergenic | 45.0% | |
| ! | CCATGCGTCTTTAAGGAATG+TGG | - | chr6_1:94209896-94209915 | Msa0899250:CDS | 45.0% |
| GACACAAGCAGAACTTGTGT+TGG | - | chr6_1:94209989-94210008 | Msa0899250:CDS | 45.0% | |
| TTTGCAGGCACACTTGAGGT+TGG | + | chr6_1:94209292-94209311 | None:intergenic | 50.0% | |
| TCTCGTCCTCTTACCAATGC+AGG | + | chr6_1:94209482-94209501 | None:intergenic | 50.0% | |
| TCATGTACGTTCTTAGCGGG+TGG | - | chr6_1:94209576-94209595 | Msa0899250:CDS | 50.0% | |
| ! | CATGTACGTTCTTAGCGGGT+GGG | - | chr6_1:94209577-94209596 | Msa0899250:CDS | 50.0% |
| TGATATCGCACACCTCGATG+TGG | + | chr6_1:94209813-94209832 | None:intergenic | 50.0% | |
| TTTGCAGGCACACTTGAGGT+TGG | + | chr6_1:94209292-94209311 | None:intergenic | 50.0% | |
| TCTCGTCCTCTTACCAATGC+AGG | + | chr6_1:94209482-94209501 | None:intergenic | 50.0% | |
| TCATGTACGTTCTTAGCGGG+TGG | - | chr6_1:94209576-94209595 | Msa0899250:CDS | 50.0% | |
| ! | CATGTACGTTCTTAGCGGGT+GGG | - | chr6_1:94209577-94209596 | Msa0899250:CDS | 50.0% |
| TGATATCGCACACCTCGATG+TGG | + | chr6_1:94209813-94209832 | None:intergenic | 50.0% | |
| ! | TACGTTCTTAGCGGGTGGGA+GGG | - | chr6_1:94209581-94209600 | Msa0899250:CDS | 55.0% |
| ! | TACGTTCTTAGCGGGTGGGA+GGG | - | chr6_1:94209581-94209600 | Msa0899250:CDS | 55.0% |
| ! | GTACGTTCTTAGCGGGTGGG+AGG | - | chr6_1:94209580-94209599 | Msa0899250:CDS | 60.0% |
| ! | GTACGTTCTTAGCGGGTGGG+AGG | - | chr6_1:94209580-94209599 | Msa0899250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 94209052 | 94210142 | 94209052 | ID=Msa0899250;Name=Msa0899250 |
| chr6_1 | mRNA | 94209052 | 94210142 | 94209052 | ID=Msa0899250-mRNA-1;Parent=Msa0899250;Name=Msa0899250-mRNA-1;_AED=0.26;_eAED=0.32;_QI=0|0|0|0.66|0.5|0.66|3|0|286 |
| chr6_1 | exon | 94209894 | 94210142 | 94209894 | ID=Msa0899250-mRNA-1:exon:16079;Parent=Msa0899250-mRNA-1 |
| chr6_1 | exon | 94209523 | 94209748 | 94209523 | ID=Msa0899250-mRNA-1:exon:16078;Parent=Msa0899250-mRNA-1 |
| chr6_1 | exon | 94209052 | 94209437 | 94209052 | ID=Msa0899250-mRNA-1:exon:16077;Parent=Msa0899250-mRNA-1 |
| chr6_1 | CDS | 94209894 | 94210142 | 94209894 | ID=Msa0899250-mRNA-1:cds;Parent=Msa0899250-mRNA-1 |
| chr6_1 | CDS | 94209523 | 94209748 | 94209523 | ID=Msa0899250-mRNA-1:cds;Parent=Msa0899250-mRNA-1 |
| chr6_1 | CDS | 94209052 | 94209437 | 94209052 | ID=Msa0899250-mRNA-1:cds;Parent=Msa0899250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
