Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979850 | XP_024630907.1 | 96.183 | 393 | 15 | 0 | 27 | 419 | 31 | 423 | 0.0 | 779 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979850 | sp|Q9M2U3|ALPL_ARATH | 22.801 | 307 | 189 | 10 | 81 | 358 | 68 | 355 | 8.80e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979850 | A0A396JV57 | 96.183 | 393 | 15 | 0 | 27 | 419 | 31 | 423 | 0.0 | 779 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0979850 | 0.809380 | 1.947646e-50 | -8.615850e-47 |
| Msa0016580 | Msa0979850 | 0.826040 | 3.374799e-54 | -8.615850e-47 |
| Msa0102070 | Msa0979850 | 0.818198 | 2.220948e-52 | -8.615850e-47 |
| Msa0110270 | Msa0979850 | 0.820264 | 7.519655e-53 | -8.615850e-47 |
| Msa0636170 | Msa0979850 | 0.805855 | 1.091352e-49 | -8.615850e-47 |
| Msa0639610 | Msa0979850 | 0.800896 | 1.162230e-48 | -8.615850e-47 |
| Msa0726140 | Msa0979850 | 0.822285 | 2.570553e-53 | -8.615850e-47 |
| Msa0729800 | Msa0979850 | 0.827085 | 1.900464e-54 | -8.615850e-47 |
| Msa0733290 | Msa0979850 | 0.828804 | 7.332308e-55 | -8.615850e-47 |
| Msa0743810 | Msa0979850 | 0.833922 | 4.037632e-56 | -8.615850e-47 |
| Msa0745060 | Msa0979850 | 0.824954 | 6.099374e-54 | -8.615850e-47 |
| Msa0767720 | Msa0979850 | 0.827116 | 1.868353e-54 | -8.615850e-47 |
| Msa0783160 | Msa0979850 | 0.836888 | 7.187636e-57 | -8.615850e-47 |
| Msa0787600 | Msa0979850 | 0.859752 | 3.327831e-63 | -8.615850e-47 |
| Msa0808010 | Msa0979850 | 0.836605 | 8.484355e-57 | -8.615850e-47 |
| Msa0808020 | Msa0979850 | 0.832431 | 9.490869e-56 | -8.615850e-47 |
| Msa0825860 | Msa0979850 | 0.831666 | 1.467030e-55 | -8.615850e-47 |
| Msa0833300 | Msa0979850 | 0.803630 | 3.180338e-49 | -8.615850e-47 |
| Msa0142220 | Msa0979850 | 0.816017 | 6.866640e-52 | -8.615850e-47 |
| Msa0200000 | Msa0979850 | 0.827633 | 1.404445e-54 | -8.615850e-47 |
| Msa0227480 | Msa0979850 | 0.821099 | 4.834797e-53 | -8.615850e-47 |
| Msa0384800 | Msa0979850 | 0.828134 | 1.064544e-54 | -8.615850e-47 |
| Msa0414410 | Msa0979850 | 0.839570 | 1.463794e-57 | -8.615850e-47 |
| Msa0414420 | Msa0979850 | 0.849475 | 3.157484e-60 | -8.615850e-47 |
| Msa0450000 | Msa0979850 | 0.828208 | 1.021233e-54 | -8.615850e-47 |
| Msa0452900 | Msa0979850 | 0.862557 | 4.657711e-64 | -8.615850e-47 |
| Msa0453120 | Msa0979850 | 0.803492 | 3.397641e-49 | -8.615850e-47 |
| Msa0979850 | Msa0989060 | 0.804583 | 2.014744e-49 | -8.615850e-47 |
| Msa0979850 | Msa1016280 | 0.838879 | 2.212200e-57 | -8.615850e-47 |
| Msa0979850 | Msa1025360 | 0.857075 | 2.088842e-62 | -8.615850e-47 |
| Msa0979850 | Msa1025370 | 0.852800 | 3.639069e-61 | -8.615850e-47 |
| Msa0979850 | Msa1044830 | 0.853459 | 2.356068e-61 | -8.615850e-47 |
| Msa0979850 | Msa1044840 | 0.856706 | 2.683343e-62 | -8.615850e-47 |
| Msa0979850 | Msa1060840 | 0.805455 | 1.323890e-49 | -8.615850e-47 |
| Msa0979850 | Msa1100980 | 0.829381 | 5.315123e-55 | -8.615850e-47 |
| Msa0979850 | Msa1109440 | 0.838174 | 3.363852e-57 | -8.615850e-47 |
| Msa0979850 | Msa1121200 | 0.837165 | 6.105761e-57 | -8.615850e-47 |
| Msa0979850 | Msa1135740 | 0.808636 | 2.809942e-50 | -8.615850e-47 |
| Msa0979850 | Msa1136090 | 0.801683 | 8.018711e-49 | -8.615850e-47 |
| Msa0979850 | Msa1146110 | 0.815618 | 8.430085e-52 | -8.615850e-47 |
| Msa0979850 | Msa1187940 | 0.803770 | 2.974769e-49 | -8.615850e-47 |
| Msa0979850 | Msa1187950 | 0.800820 | 1.204686e-48 | -8.615850e-47 |
| Msa0979850 | Msa1192640 | 0.836603 | 8.496847e-57 | -8.615850e-47 |
| Msa0979850 | Msa1246880 | 0.803347 | 3.639986e-49 | -8.615850e-47 |
| Msa0979850 | Msa1269670 | 0.834895 | 2.300199e-56 | -8.615850e-47 |
| Msa0979850 | Msa1270230 | 0.842062 | 3.251526e-58 | -8.615850e-47 |
| Msa0979850 | Msa1270240 | 0.808300 | 3.314715e-50 | -8.615850e-47 |
| Msa0979850 | Msa1270270 | 0.803589 | 3.243080e-49 | -8.615850e-47 |
| Msa0979850 | Msa1283330 | 0.841093 | 5.854885e-58 | -8.615850e-47 |
| Msa0979850 | Msa1285930 | 0.843628 | 1.246253e-58 | -8.615850e-47 |
| Msa0979850 | Msa1287800 | 0.842364 | 2.705200e-58 | -8.615850e-47 |
| Msa0979850 | Msa1287810 | 0.869323 | 3.373518e-66 | -8.615850e-47 |
| Msa0979850 | Msa1289430 | 0.803230 | 3.849535e-49 | -8.615850e-47 |
| Msa0979850 | Msa1307890 | 0.817166 | 3.797625e-52 | -8.615850e-47 |
| Msa0979850 | Msa1310120 | 0.809581 | 1.763074e-50 | -8.615850e-47 |
| Msa0979850 | Msa1320300 | 0.820389 | 7.039108e-53 | -8.615850e-47 |
| Msa0979850 | Msa1340590 | 0.817675 | 2.916678e-52 | -8.615850e-47 |
| Msa0979850 | Msa1344520 | 0.800583 | 1.346204e-48 | -8.615850e-47 |
| Msa0979850 | Msa1397580 | 0.809557 | 1.784035e-50 | -8.615850e-47 |
| Msa0979850 | Msa1402790 | 0.806234 | 9.080534e-50 | -8.615850e-47 |
| Msa0979850 | Msa1404000 | 0.835931 | 1.258818e-56 | -8.615850e-47 |
| Msa0979850 | Msa1408780 | 0.822019 | 2.962898e-53 | -8.615850e-47 |
| Msa0979850 | Msa1415310 | 0.829364 | 5.364976e-55 | -8.615850e-47 |
| Msa0979850 | Msa1422180 | 0.832127 | 1.128667e-55 | -8.615850e-47 |
| Msa0979850 | Msa1433120 | 0.823487 | 1.348909e-53 | -8.615850e-47 |
| Msa0247260 | Msa0979850 | 0.800802 | 1.214660e-48 | -8.615850e-47 |
| Msa0267000 | Msa0979850 | 0.844690 | 6.466617e-59 | -8.615850e-47 |
| Msa0267010 | Msa0979850 | 0.849962 | 2.309365e-60 | -8.615850e-47 |
| Msa0285810 | Msa0979850 | 0.817770 | 2.776154e-52 | -8.615850e-47 |
| Msa0342240 | Msa0979850 | 0.837632 | 4.635260e-57 | -8.615850e-47 |
| Msa0360510 | Msa0979850 | 0.803889 | 2.810672e-49 | -8.615850e-47 |
| Msa0491590 | Msa0979850 | 0.809992 | 1.438024e-50 | -8.615850e-47 |
| Msa0564890 | Msa0979850 | 0.835833 | 1.333079e-56 | -8.615850e-47 |
| Msa0846330 | Msa0979850 | 0.801486 | 8.800853e-49 | -8.615850e-47 |
| Msa0846350 | Msa0979850 | 0.802345 | 5.861845e-49 | -8.615850e-47 |
| Msa0848960 | Msa0979850 | 0.812942 | 3.288079e-51 | -8.615850e-47 |
| Msa0858980 | Msa0979850 | 0.816923 | 4.305734e-52 | -8.615850e-47 |
| Msa0865320 | Msa0979850 | 0.811019 | 8.631539e-51 | -8.615850e-47 |
| Msa0888370 | Msa0979850 | 0.831408 | 1.697497e-55 | -8.615850e-47 |
| Msa0899250 | Msa0979850 | 0.851241 | 1.008904e-60 | -8.615850e-47 |
| Msa0956270 | Msa0979850 | 0.821624 | 3.658118e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979850 | MtrunA17_Chr1g0207391 | 96.183 | 393 | 15 | 0 | 27 | 419 | 31 | 423 | 0.0 | 779 |
| Msa0979850 | MtrunA17_Chr7g0226311 | 40.841 | 333 | 183 | 4 | 86 | 415 | 11 | 332 | 6.50e-84 | 260 |
| Msa0979850 | MtrunA17_Chr6g0477141 | 42.763 | 304 | 172 | 1 | 64 | 365 | 120 | 423 | 4.51e-81 | 257 |
| Msa0979850 | MtrunA17_Chr6g0478531 | 39.945 | 363 | 206 | 3 | 65 | 416 | 19 | 380 | 8.65e-81 | 254 |
| Msa0979850 | MtrunA17_Chr8g0391981 | 40.566 | 318 | 176 | 5 | 90 | 399 | 83 | 395 | 2.39e-76 | 243 |
| Msa0979850 | MtrunA17_Chr1g0172731 | 34.557 | 327 | 200 | 7 | 49 | 365 | 28 | 350 | 5.44e-62 | 206 |
| Msa0979850 | MtrunA17_Chr1g0190171 | 34.557 | 327 | 200 | 7 | 49 | 365 | 28 | 350 | 6.87e-62 | 205 |
| Msa0979850 | MtrunA17_Chr1g0182341 | 32.039 | 309 | 172 | 6 | 69 | 365 | 45 | 327 | 1.20e-46 | 164 |
| Msa0979850 | MtrunA17_Chr2g0321401 | 30.508 | 236 | 148 | 6 | 49 | 271 | 27 | 259 | 1.43e-32 | 124 |
| Msa0979850 | MtrunA17_Chr2g0285471 | 32.474 | 194 | 118 | 5 | 88 | 271 | 1 | 191 | 1.00e-29 | 114 |
| Msa0979850 | MtrunA17_Chr8g0334561 | 28.692 | 237 | 153 | 6 | 48 | 271 | 27 | 260 | 7.56e-29 | 114 |
| Msa0979850 | MtrunA17_Chr4g0018411 | 39.216 | 153 | 80 | 4 | 266 | 416 | 9 | 150 | 2.48e-28 | 109 |
| Msa0979850 | MtrunA17_Chr7g0267201 | 33.750 | 160 | 96 | 2 | 91 | 240 | 1 | 160 | 1.31e-22 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979850 | AT5G35695.1 | 61.458 | 192 | 58 | 4 | 234 | 420 | 26 | 206 | 6.79e-76 | 235 |
| Msa0979850 | AT5G41980.1 | 36.193 | 373 | 208 | 8 | 55 | 416 | 11 | 364 | 8.32e-65 | 212 |
| Msa0979850 | AT1G43722.1 | 34.074 | 270 | 167 | 4 | 70 | 329 | 51 | 319 | 2.41e-44 | 157 |
| Msa0979850 | AT5G28950.1 | 70.408 | 98 | 28 | 1 | 167 | 263 | 1 | 98 | 1.52e-41 | 144 |
| Msa0979850 | AT3G30525.1 | 34.591 | 159 | 97 | 3 | 195 | 347 | 1 | 158 | 3.99e-24 | 98.6 |
| Msa0979850 | AT5G28730.1 | 27.311 | 238 | 144 | 4 | 86 | 318 | 25 | 238 | 6.02e-21 | 92.8 |
| Msa0979850 | AT3G55350.1 | 22.801 | 307 | 189 | 10 | 81 | 358 | 68 | 355 | 8.94e-13 | 70.1 |
Find 51 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCGTCATGCGTCTTTA+AGG | 0.095606 | 6_4:-17184478 | Msa0979850:CDS |
| GTAATTCGTCGTCGAGTTAA+TGG | 0.220577 | 6_4:+17185410 | None:intergenic |
| TTATACAATATCGAGCATTT+TGG | 0.240408 | 6_4:+17185201 | None:intergenic |
| TATATACATAAATCATTAAA+TGG | 0.273521 | 6_4:-17185371 | Msa0979850:CDS |
| AATGTGGTTGAGAGAATATT+TGG | 0.317602 | 6_4:-17184455 | Msa0979850:CDS |
| TCATTATTGTCTTCATGAAT+AGG | 0.320777 | 6_4:+17184257 | None:intergenic |
| AGCCATATACATGTATATTA+TGG | 0.329326 | 6_4:-17185501 | Msa0979850:CDS |
| TGCCATAATATACATGTATA+TGG | 0.329982 | 6_4:+17185499 | None:intergenic |
| GATACAAGATTTATTTGTAT+TGG | 0.337150 | 6_4:-17185257 | Msa0979850:CDS |
| CTCAATAGCACCTGATTTGA+TGG | 0.344546 | 6_4:-17185108 | Msa0979850:CDS |
| AGCTGCTTGTAATTTCGATT+TGG | 0.365004 | 6_4:-17184816 | Msa0979850:CDS |
| CAAAGCATCATTTAGCAACT+TGG | 0.377464 | 6_4:+17184748 | None:intergenic |
| GATTGCATTGGAGCTATTGA+TGG | 0.391567 | 6_4:-17184920 | Msa0979850:CDS |
| AACGAGAAGATGCTAATCTA+TGG | 0.395264 | 6_4:-17184205 | Msa0979850:CDS |
| CATTTAGCAACTTGGAATCA+TGG | 0.400539 | 6_4:+17184756 | None:intergenic |
| TGTATAATTAGAAATACATT+TGG | 0.402713 | 6_4:-17185185 | Msa0979850:CDS |
| AATCTATGGAGGACTAATAT+AGG | 0.403864 | 6_4:-17184191 | Msa0979850:CDS |
| GTTGGTTTAGCCATCAAATC+AGG | 0.412864 | 6_4:+17185098 | None:intergenic |
| GCGTCGTTCTTACAGATTGT+CGG | 0.432319 | 6_4:-17185224 | Msa0979850:CDS |
| GACTCGTTAGAATGTTCAAC+TGG | 0.440308 | 6_4:+17184302 | None:intergenic |
| CATATTCCTGCATTGGTAAG+AGG | 0.460409 | 6_4:-17184893 | Msa0979850:CDS |
| TGCTAAATGATGCTTTGAAA+AGG | 0.482649 | 6_4:-17184742 | Msa0979850:CDS |
| GATGCTTTGAAAAGGAAGAA+TGG | 0.484883 | 6_4:-17184734 | Msa0979850:CDS |
| TCGACGACGAATTACAAGTA+AGG | 0.491797 | 6_4:-17185402 | Msa0979850:CDS |
| CACTTGCAGCAAATTGTGAT+CGG | 0.496654 | 6_4:+17185162 | None:intergenic |
| CATAACTTTCGAAAGACATC+AGG | 0.498455 | 6_4:+17185311 | None:intergenic |
| ATTTAGCAACTTGGAATCAT+GGG | 0.505901 | 6_4:+17184757 | None:intergenic |
| CTAATATAGGTTCAGATATG+TGG | 0.511004 | 6_4:-17184178 | Msa0979850:CDS |
| TGATCACATACCTTGAAGTA+AGG | 0.519561 | 6_4:+17185032 | None:intergenic |
| TTTGCAGGCACACTTGAGGT+TGG | 0.522108 | 6_4:+17185080 | None:intergenic |
| CCATGTACGTTCTTAGCGGG+TGG | 0.526839 | 6_4:-17184790 | Msa0979850:CDS |
| TATGTGGAGAGATGCTACTT+AGG | 0.527173 | 6_4:-17184162 | None:intergenic |
| TCTCGTCCTCTTACCAATGC+AGG | 0.530406 | 6_4:+17184887 | None:intergenic |
| TAATGACCCTGAAAATGAAA+AGG | 0.542906 | 6_4:-17184510 | Msa0979850:CDS |
| AGTCCATGTACGTTCTTAGC+GGG | 0.544261 | 6_4:-17184793 | Msa0979850:CDS |
| GTACGTTCTTAGCGGGTGGG+AGG | 0.544285 | 6_4:-17184786 | Msa0979850:CDS |
| TACGTTCTTAGCGGGTGGGA+GGG | 0.546796 | 6_4:-17184785 | Msa0979850:CDS |
| GAGTCCATGTACGTTCTTAG+CGG | 0.547275 | 6_4:-17184794 | Msa0979850:CDS |
| GACACAAGCAGAACTTGTGT+TGG | 0.559273 | 6_4:-17184378 | Msa0979850:CDS |
| TGGTACACATATTCCTGCAT+TGG | 0.559514 | 6_4:-17184900 | Msa0979850:CDS |
| CATGTACGTTCTTAGCGGGT+GGG | 0.565324 | 6_4:-17184789 | Msa0979850:CDS |
| TCATGCGTCTTTAAGGAATG+TGG | 0.573917 | 6_4:-17184471 | Msa0979850:CDS |
| ATGTTCAACTGGAAATTCAT+CGG | 0.590852 | 6_4:+17184313 | None:intergenic |
| CGACGACGAATTACAAGTAA+GGG | 0.598127 | 6_4:-17185401 | Msa0979850:CDS |
| AGCAGTTATCGTGATCGTCA+TGG | 0.601808 | 6_4:-17184860 | Msa0979850:CDS |
| ATAAATCTTGTATCCACCAA+AGG | 0.606437 | 6_4:+17185266 | None:intergenic |
| TGATATCGCACACCTCGAAG+TGG | 0.613190 | 6_4:+17184557 | None:intergenic |
| GTTATCGTGATCGTCATGGA+AGG | 0.625280 | 6_4:-17184856 | Msa0979850:CDS |
| AATTCATGCTTTAATGCACG+TGG | 0.633739 | 6_4:-17185477 | Msa0979850:CDS |
| GAGAAGATGCTAATCTATGG+AGG | 0.639211 | 6_4:-17184202 | Msa0979850:CDS |
| AATGGACTAAAAGTGCCCCA+CGG | 0.730602 | 6_4:-17184716 | Msa0979850:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAATAAATTTTTTTTA+TGG | - | chr6_4:17184785-17184804 | Msa0979850:CDS | 0.0% |
| !! | TATATACATAAATCATTAAA+TGG | - | chr6_4:17184379-17184398 | Msa0979850:CDS | 10.0% |
| !!! | TTATATATAAACAAACTTTT+AGG | - | chr6_4:17184808-17184827 | Msa0979850:CDS | 10.0% |
| !! | TGTATAATTAGAAATACATT+TGG | - | chr6_4:17184565-17184584 | Msa0979850:CDS | 15.0% |
| !!! | TTAATTAGGTAAATATTTTC+TGG | - | chr6_4:17185132-17185151 | Msa0979850:CDS | 15.0% |
| !!! | TAATTAGGTAAATATTTTCT+GGG | - | chr6_4:17185133-17185152 | Msa0979850:CDS | 15.0% |
| !! | GATACAAGATTTATTTGTAT+TGG | - | chr6_4:17184493-17184512 | Msa0979850:CDS | 20.0% |
| !!! | AAATTTTCACAAGATTTTGA+AGG | - | chr6_4:17184612-17184631 | Msa0979850:CDS | 20.0% |
| !! | AAAAATTAATTACTTACCGT+GGG | + | chr6_4:17185053-17185072 | None:intergenic | 20.0% |
| !! | TAAAAATTAATTACTTACCG+TGG | + | chr6_4:17185054-17185073 | None:intergenic | 20.0% |
| !! | TCTGTATTGTCAATTTAATT+AGG | - | chr6_4:17185118-17185137 | Msa0979850:CDS | 20.0% |
| !!! | AATTAGGTAAATATTTTCTG+GGG | - | chr6_4:17185134-17185153 | Msa0979850:CDS | 20.0% |
| ! | AGCCATATACATGTATATTA+TGG | - | chr6_4:17184249-17184268 | Msa0979850:CDS | 25.0% |
| ! | TGCCATAATATACATGTATA+TGG | + | chr6_4:17184254-17184273 | None:intergenic | 25.0% |
| ! | TATAAGAGAAAAAACACCTT+TGG | - | chr6_4:17184468-17184487 | Msa0979850:CDS | 25.0% |
| !! | TTATACAATATCGAGCATTT+TGG | + | chr6_4:17184552-17184571 | None:intergenic | 25.0% |
| !! | AAGATTTTATCCTTACTTCA+AGG | - | chr6_4:17184708-17184727 | Msa0979850:intron | 25.0% |
| ! | AAAATTAATTACTTACCGTG+GGG | + | chr6_4:17185052-17185071 | None:intergenic | 25.0% |
| !! | ATTAGGTAAATATTTTCTGG+GGG | - | chr6_4:17185135-17185154 | Msa0979850:CDS | 25.0% |
| !! | ATAACTCCTTTTCATTTTCA+GGG | + | chr6_4:17185249-17185268 | None:intergenic | 25.0% |
| !! | AATAACTCCTTTTCATTTTC+AGG | + | chr6_4:17185250-17185269 | None:intergenic | 25.0% |
| ! | TCATTATTGTCTTCATGAAT+AGG | + | chr6_4:17185496-17185515 | None:intergenic | 25.0% |
| ! | CAGTTTTTGAATATGATGTG+TGG | - | chr6_4:17184301-17184320 | Msa0979850:CDS | 30.0% |
| ATAAATCTTGTATCCACCAA+AGG | + | chr6_4:17184487-17184506 | None:intergenic | 30.0% | |
| !!! | ACAAACTTTTAGGATTGCAT+TGG | - | chr6_4:17184818-17184837 | Msa0979850:CDS | 30.0% |
| ATTTAGCAACTTGGAATCAT+GGG | + | chr6_4:17184996-17185015 | None:intergenic | 30.0% | |
| !! | TGCTAAATGATGCTTTGAAA+AGG | - | chr6_4:17185008-17185027 | Msa0979850:intron | 30.0% |
| ! | TATCATCTACAAGATTTTGC+AGG | - | chr6_4:17185211-17185230 | Msa0979850:CDS | 30.0% |
| TAATGACCCTGAAAATGAAA+AGG | - | chr6_4:17185240-17185259 | Msa0979850:CDS | 30.0% | |
| AATGTGGTTGAGAGAATATT+TGG | - | chr6_4:17185295-17185314 | Msa0979850:CDS | 30.0% | |
| TGTGTCTTAAACAAAAATGG+AGG | + | chr6_4:17185358-17185377 | None:intergenic | 30.0% | |
| GCTTGTGTCTTAAACAAAAA+TGG | + | chr6_4:17185361-17185380 | None:intergenic | 30.0% | |
| ATGTTCAACTGGAAATTCAT+CGG | + | chr6_4:17185440-17185459 | None:intergenic | 30.0% | |
| AATCTATGGAGGACTAATAT+AGG | - | chr6_4:17185559-17185578 | Msa0979850:CDS | 30.0% | |
| CTAATATAGGTTCAGATATG+TGG | - | chr6_4:17185572-17185591 | Msa0979850:CDS | 30.0% | |
| AATTCATGCTTTAATGCACG+TGG | - | chr6_4:17184273-17184292 | Msa0979850:CDS | 35.0% | |
| CATAACTTTCGAAAGACATC+AGG | + | chr6_4:17184442-17184461 | None:intergenic | 35.0% | |
| AAGAGAAAAAACACCTTTGG+TGG | - | chr6_4:17184471-17184490 | Msa0979850:CDS | 35.0% | |
| AAGTGTGCCTGCAAAAATAA+GGG | - | chr6_4:17184678-17184697 | Msa0979850:intron | 35.0% | |
| TGATCACATACCTTGAAGTA+AGG | + | chr6_4:17184721-17184740 | None:intergenic | 35.0% | |
| AGCTGCTTGTAATTTCGATT+TGG | - | chr6_4:17184934-17184953 | Msa0979850:intron | 35.0% | |
| CATTTAGCAACTTGGAATCA+TGG | + | chr6_4:17184997-17185016 | None:intergenic | 35.0% | |
| ! | CAAAGCATCATTTAGCAACT+TGG | + | chr6_4:17185005-17185024 | None:intergenic | 35.0% |
| !! | GATGCTTTGAAAAGGAAGAA+TGG | - | chr6_4:17185016-17185035 | Msa0979850:intron | 35.0% |
| !! | AAATATTTTCTGGGGGATTG+CGG | - | chr6_4:17185142-17185161 | Msa0979850:CDS | 35.0% |
| !!! | AAATTTTTAGCTCCACTTCG+AGG | - | chr6_4:17185181-17185200 | Msa0979850:CDS | 35.0% |
| AACGAGAAGATGCTAATCTA+TGG | - | chr6_4:17185545-17185564 | Msa0979850:CDS | 35.0% | |
| GTAATTCGTCGTCGAGTTAA+TGG | + | chr6_4:17184343-17184362 | None:intergenic | 40.0% | |
| TCGACGACGAATTACAAGTA+AGG | - | chr6_4:17184348-17184367 | Msa0979850:CDS | 40.0% | |
| CGACGACGAATTACAAGTAA+GGG | - | chr6_4:17184349-17184368 | Msa0979850:CDS | 40.0% | |
| CACTTGCAGCAAATTGTGAT+CGG | + | chr6_4:17184591-17184610 | None:intergenic | 40.0% | |
| ! | CTCAATAGCACCTGATTTGA+TGG | - | chr6_4:17184642-17184661 | Msa0979850:intron | 40.0% |
| ! | GTTGGTTTAGCCATCAAATC+AGG | + | chr6_4:17184655-17184674 | None:intergenic | 40.0% |
| !! | TATTTTTGCAGGCACACTTG+AGG | + | chr6_4:17184677-17184696 | None:intergenic | 40.0% |
| CAAGTGTGCCTGCAAAAATA+AGG | - | chr6_4:17184677-17184696 | Msa0979850:intron | 40.0% | |
| !!! | CTGCTTTCCCTTATTTTTGC+AGG | + | chr6_4:17184688-17184707 | None:intergenic | 40.0% |
| GATTGCATTGGAGCTATTGA+TGG | - | chr6_4:17184830-17184849 | Msa0979850:CDS | 40.0% | |
| TGGTACACATATTCCTGCAT+TGG | - | chr6_4:17184850-17184869 | Msa0979850:CDS | 40.0% | |
| ! | CATATTCCTGCATTGGTAAG+AGG | - | chr6_4:17184857-17184876 | Msa0979850:CDS | 40.0% |
| ! | CTACAAGATTTTGCAGGTCA+CGG | - | chr6_4:17185217-17185236 | Msa0979850:CDS | 40.0% |
| ATCTTCGTCATGCGTCTTTA+AGG | - | chr6_4:17185272-17185291 | Msa0979850:CDS | 40.0% | |
| ! | TCATGCGTCTTTAAGGAATG+TGG | - | chr6_4:17185279-17185298 | Msa0979850:CDS | 40.0% |
| GACTCGTTAGAATGTTCAAC+TGG | + | chr6_4:17185451-17185470 | None:intergenic | 40.0% | |
| GAGAAGATGCTAATCTATGG+AGG | - | chr6_4:17185548-17185567 | Msa0979850:CDS | 40.0% | |
| GCGTCGTTCTTACAGATTGT+CGG | - | chr6_4:17184526-17184545 | Msa0979850:CDS | 45.0% | |
| AGCAGTTATCGTGATCGTCA+TGG | - | chr6_4:17184890-17184909 | Msa0979850:CDS | 45.0% | |
| GTTATCGTGATCGTCATGGA+AGG | - | chr6_4:17184894-17184913 | Msa0979850:CDS | 45.0% | |
| GAGTCCATGTACGTTCTTAG+CGG | - | chr6_4:17184956-17184975 | Msa0979850:intron | 45.0% | |
| AGTCCATGTACGTTCTTAGC+GGG | - | chr6_4:17184957-17184976 | Msa0979850:intron | 45.0% | |
| !! | AATGGACTAAAAGTGCCCCA+CGG | - | chr6_4:17185034-17185053 | Msa0979850:intron | 45.0% |
| GACACAAGCAGAACTTGTGT+TGG | - | chr6_4:17185372-17185391 | Msa0979850:CDS | 45.0% | |
| TTTGCAGGCACACTTGAGGT+TGG | + | chr6_4:17184673-17184692 | None:intergenic | 50.0% | |
| TCTCGTCCTCTTACCAATGC+AGG | + | chr6_4:17184866-17184885 | None:intergenic | 50.0% | |
| ! | CATGTACGTTCTTAGCGGGT+GGG | - | chr6_4:17184961-17184980 | Msa0979850:intron | 50.0% |
| TGATATCGCACACCTCGAAG+TGG | + | chr6_4:17185196-17185215 | None:intergenic | 50.0% | |
| CCACCCGCTAAGAACGTACA+TGG | + | chr6_4:17184963-17184982 | None:intergenic | 55.0% | |
| CCATGTACGTTCTTAGCGGG+TGG | - | chr6_4:17184960-17184979 | Msa0979850:intron | 55.0% | |
| ! | TACGTTCTTAGCGGGTGGGA+GGG | - | chr6_4:17184965-17184984 | Msa0979850:intron | 55.0% |
| ! | GTACGTTCTTAGCGGGTGGG+AGG | - | chr6_4:17184964-17184983 | Msa0979850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 17184163 | 17185609 | 17184163 | ID=Msa0979850;Name=Msa0979850 |
| chr6_4 | mRNA | 17184163 | 17185609 | 17184163 | ID=Msa0979850-mRNA-1;Parent=Msa0979850;Name=Msa0979850-mRNA-1;_AED=0.33;_eAED=0.39;_QI=0|0|0|0.66|1|1|3|0|420 |
| chr6_4 | exon | 17185043 | 17185609 | 17185043 | ID=Msa0979850-mRNA-1:exon:5477;Parent=Msa0979850-mRNA-1 |
| chr6_4 | exon | 17184717 | 17184942 | 17184717 | ID=Msa0979850-mRNA-1:exon:5476;Parent=Msa0979850-mRNA-1 |
| chr6_4 | exon | 17184163 | 17184632 | 17184163 | ID=Msa0979850-mRNA-1:exon:5475;Parent=Msa0979850-mRNA-1 |
| chr6_4 | CDS | 17185043 | 17185609 | 17185043 | ID=Msa0979850-mRNA-1:cds;Parent=Msa0979850-mRNA-1 |
| chr6_4 | CDS | 17184717 | 17184942 | 17184717 | ID=Msa0979850-mRNA-1:cds;Parent=Msa0979850-mRNA-1 |
| chr6_4 | CDS | 17184163 | 17184632 | 17184163 | ID=Msa0979850-mRNA-1:cds;Parent=Msa0979850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
