AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130350 MtrunA17_Chr7g0275531 91.642 335 19 2 1 333 1 328 0.0 619
Msa1130350 MtrunA17_Chr8g0347251 44.837 368 141 15 1 329 1 345 2.43e-78 243
Msa1130350 MtrunA17_Chr8g0387981 36.585 369 189 12 1 332 1 361 1.51e-55 184
Msa1130350 MtrunA17_Chr3g0126391 53.125 192 67 9 12 185 7 193 1.17e-53 179
Msa1130350 MtrunA17_Chr7g0244981 33.500 200 108 5 9 198 11 195 3.74e-26 105
Msa1130350 MtrunA17_Chr7g0244971 32.275 189 97 5 9 184 12 182 3.73e-25 102
Msa1130350 MtrunA17_Chr8g0334541 36.364 176 85 5 15 184 8 162 1.60e-24 100
Msa1130350 MtrunA17_Chr2g0315371 30.622 209 109 6 11 195 15 211 6.66e-21 91.3
Msa1130350 MtrunA17_Chr8g0350621 30.556 180 96 7 15 184 10 170 1.82e-20 89.4
Msa1130350 MtrunA17_Chr5g0428351 31.892 185 101 6 7 189 87 248 1.47e-19 87.8
Msa1130350 MtrunA17_Chr3g0128671 30.570 193 103 5 18 196 23 198 1.75e-19 87.4
Msa1130350 MtrunA17_Chr2g0315381 45.349 86 37 2 100 184 127 203 6.32e-19 85.9
Msa1130350 MtrunA17_Chr2g0315361 45.349 86 38 2 99 184 131 207 1.00e-17 82.4
Msa1130350 MtrunA17_Chr1g0147881 43.529 85 44 2 98 182 237 317 2.75e-16 78.6
Msa1130350 MtrunA17_Chr7g0270051 40.870 115 63 3 78 189 3 115 4.16e-16 77.0
Msa1130350 MtrunA17_Chr7g0224801 55.224 67 25 2 124 190 92 153 1.16e-15 73.9
Msa1130350 MtrunA17_Chr7g0270191 40.594 101 56 2 88 187 107 204 1.45e-15 75.9
Msa1130350 MtrunA17_Chr8g0348311 38.679 106 59 3 82 187 114 213 3.19e-15 75.5
Msa1130350 MtrunA17_Chr4g0071521 32.624 141 72 3 42 182 183 300 3.43e-15 75.1
Msa1130350 MtrunA17_Chr8g0387501 47.297 74 33 3 121 194 125 192 4.25e-15 74.3
Msa1130350 MtrunA17_Chr8g0379461 36.885 122 65 3 99 215 45 159 7.03e-15 73.2
Msa1130350 MtrunA17_Chr7g0248691 51.515 66 26 2 126 191 155 214 2.93e-14 72.4
Msa1130350 MtrunA17_Chr5g0401821 54.386 57 24 1 126 182 200 254 3.38e-14 71.6
Msa1130350 MtrunA17_Chr2g0293481 41.748 103 52 4 126 222 268 368 4.40e-14 72.8
Msa1130350 MtrunA17_Chr2g0319961 43.750 96 48 3 99 190 50 143 5.86e-14 70.9
Msa1130350 MtrunA17_Chr5g0418781 52.381 63 26 2 124 186 123 181 7.27e-14 70.9
Msa1130350 MtrunA17_Chr2g0284321 46.479 71 32 2 126 196 36 100 8.55e-14 69.7
Msa1130350 MtrunA17_Chr1g0184691 52.632 57 25 1 126 182 294 348 2.04e-13 70.5
Msa1130350 MtrunA17_Chr8g0386241 46.269 67 31 2 124 190 102 163 2.51e-13 67.4
Msa1130350 MtrunA17_Chr4g0053281 50.877 57 26 1 126 182 267 321 5.25e-13 68.9
Msa1130350 MtrunA17_Chr4g0042831 44.118 68 35 1 125 192 145 209 5.50e-13 69.3
Msa1130350 MtrunA17_Chr4g0042831 41.772 79 43 1 112 190 265 340 1.82e-11 64.7
Msa1130350 MtrunA17_Chr1g0194481 50.000 64 27 2 124 187 157 215 5.50e-13 68.9
Msa1130350 MtrunA17_Chr4g0051881 47.143 70 32 2 124 193 177 241 5.93e-13 68.9
Msa1130350 MtrunA17_Chr5g0443131 49.153 59 27 1 124 182 156 211 6.01e-13 68.6
Msa1130350 MtrunA17_Chr3g0079691 45.714 70 32 3 125 194 280 343 6.08e-13 69.7
Msa1130350 MtrunA17_Chr3g0079691 33.663 101 59 2 124 219 494 591 5.33e-11 63.9
Msa1130350 MtrunA17_Chr7g0228941 52.632 57 25 1 126 182 53 107 6.38e-13 65.1
Msa1130350 MtrunA17_Chr3g0129361 44.444 72 37 1 112 183 131 199 9.40e-13 66.6
Msa1130350 MtrunA17_Chr2g0294231 48.438 64 30 1 124 187 202 262 1.05e-12 68.2
Msa1130350 MtrunA17_Chr8g0383351 50.000 60 27 1 124 183 159 215 1.10e-12 66.6
Msa1130350 MtrunA17_Chr7g0218081 46.875 64 30 2 125 188 228 287 1.25e-12 68.6
Msa1130350 MtrunA17_Chr7g0218081 44.776 67 34 1 124 190 409 472 3.17e-12 67.4
Msa1130350 MtrunA17_Chr5g0418191 46.269 67 33 1 124 190 319 382 1.32e-12 68.2
Msa1130350 MtrunA17_Chr5g0418191 35.652 115 65 4 125 239 151 256 4.51e-11 63.5
Msa1130350 MtrunA17_Chr7g0263531 31.667 120 78 2 126 245 190 305 1.49e-12 68.2
Msa1130350 MtrunA17_Chr7g0238921 49.275 69 28 2 114 182 117 178 1.87e-12 67.0
Msa1130350 MtrunA17_Chr5g0445311 44.776 67 34 1 124 190 363 426 2.37e-12 67.8
Msa1130350 MtrunA17_Chr5g0445311 45.833 72 33 3 123 194 198 263 3.98e-12 67.0
Msa1130350 MtrunA17_Chr5g0431811 43.284 67 38 0 125 191 672 738 2.57e-12 67.8
Msa1130350 MtrunA17_Chr1g0202461 44.928 69 32 2 126 194 262 324 2.82e-12 67.0
Msa1130350 MtrunA17_Chr3g0139021 52.632 57 25 1 126 182 315 369 3.13e-12 67.0
Msa1130350 MtrunA17_Chr3g0101131 47.143 70 31 3 125 194 243 306 3.16e-12 67.4
Msa1130350 MtrunA17_Chr3g0101131 44.776 67 34 1 124 190 414 477 5.25e-12 66.6
Msa1130350 MtrunA17_Chr8g0335811 45.070 71 36 1 112 182 141 208 4.03e-12 65.1
Msa1130350 MtrunA17_Chr4g0068541 45.312 64 32 1 124 187 207 267 8.69e-12 65.9
Msa1130350 MtrunA17_Chr7g0249311 44.615 65 32 2 125 189 179 239 9.17e-12 66.2
Msa1130350 MtrunA17_Chr7g0248721 43.902 82 40 3 124 205 140 215 1.12e-11 63.5
Msa1130350 MtrunA17_Chr2g0322391 48.485 66 32 1 124 189 348 411 2.97e-11 64.3
Msa1130350 MtrunA17_Chr5g0432161 44.776 67 34 1 124 190 420 483 3.11e-11 64.3
Msa1130350 MtrunA17_Chr1g0150801 38.824 85 45 3 107 189 82 161 6.85e-11 60.1
Msa1130350 MtrunA17_Chr3g0106491 43.284 67 35 1 124 190 364 427 9.09e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130350 AT4G11070.1 38.728 346 147 13 3 324 2 306 2.52e-51 172
Msa1130350 AT4G11070.2 37.423 326 147 11 3 324 2 274 9.61e-47 160
Msa1130350 AT5G24110.1 37.066 259 120 10 12 265 17 237 8.00e-43 150
Msa1130350 AT4G23810.1 42.478 226 85 7 11 195 13 234 8.79e-43 150
Msa1130350 AT2G46400.1 37.542 301 153 10 12 309 8 276 9.74e-41 144
Msa1130350 AT3G56400.1 32.995 197 98 5 3 184 2 179 9.72e-27 107
Msa1130350 AT2G40750.1 27.941 272 160 7 5 244 8 275 1.27e-23 100
Msa1130350 AT2G40740.1 42.202 109 61 1 99 205 145 253 2.70e-22 95.5
Msa1130350 AT2G40740.3 42.202 109 61 1 99 205 154 262 3.38e-22 95.1
Msa1130350 AT5G45260.1 47.423 97 41 4 99 195 1188 1274 8.65e-19 88.2
Msa1130350 AT1G66550.1 29.282 181 90 6 16 184 13 167 5.63e-16 77.0
Msa1130350 AT1G66600.1 40.909 88 45 1 104 184 75 162 2.64e-15 74.7
Msa1130350 AT5G52830.1 54.839 62 26 1 126 187 166 225 3.16e-15 75.9
Msa1130350 AT1G29280.1 53.226 62 25 2 126 187 75 132 6.00e-15 73.9
Msa1130350 AT1G66550.2 38.636 88 47 1 104 184 75 162 1.35e-14 72.8
Msa1130350 AT4G31550.2 44.048 84 43 2 99 182 221 300 1.88e-14 73.6
Msa1130350 AT5G49520.1 50.000 64 29 1 124 187 220 280 2.21e-14 73.9
Msa1130350 AT4G31550.1 54.386 57 24 1 126 182 247 301 4.87e-14 72.4
Msa1130350 AT4G01250.1 51.613 62 26 2 126 187 129 186 8.80e-14 71.2
Msa1130350 AT1G30650.1 41.905 105 48 6 95 194 184 280 9.42e-14 72.0
Msa1130350 AT2G30590.1 50.794 63 27 2 126 188 314 372 9.82e-14 72.0
Msa1130350 AT2G34830.1 35.938 128 58 6 78 187 152 273 1.42e-13 71.6
Msa1130350 AT2G34830.2 35.938 128 58 6 78 187 161 282 1.50e-13 71.6
Msa1130350 AT1G66560.1 46.667 60 32 0 125 184 103 162 1.51e-13 70.1
Msa1130350 AT1G69310.4 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
Msa1130350 AT1G69310.2 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
Msa1130350 AT1G69310.1 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
Msa1130350 AT2G24570.1 54.386 57 24 1 126 182 244 298 4.06e-13 69.7
Msa1130350 AT2G37260.3 35.345 116 60 3 72 182 218 323 4.90e-13 69.7
Msa1130350 AT2G37260.2 35.345 116 60 3 72 182 216 321 5.03e-13 69.3
Msa1130350 AT2G37260.1 35.345 116 60 3 72 182 298 403 5.88e-13 69.7
Msa1130350 AT5G41570.1 43.038 79 40 2 112 190 85 158 7.97e-13 66.6
Msa1130350 AT5G13080.1 51.562 64 26 2 124 187 66 124 8.48e-13 65.5
Msa1130350 AT3G58710.2 43.011 93 45 4 99 187 40 128 9.41e-13 67.8
Msa1130350 AT4G24240.1 41.667 84 45 2 99 182 257 336 1.12e-12 68.6
Msa1130350 AT1G29860.1 40.476 84 45 2 110 193 121 199 1.15e-12 67.8
Msa1130350 AT1G64000.1 40.659 91 43 3 112 196 101 186 1.23e-12 66.2
Msa1130350 AT2G23320.1 50.877 57 26 1 126 182 241 295 1.25e-12 68.2
Msa1130350 AT3G58710.1 50.000 62 27 2 126 187 72 129 1.40e-12 67.4
Msa1130350 AT4G18170.1 35.238 105 63 2 83 187 130 229 1.47e-12 67.8
Msa1130350 AT2G47260.1 37.778 90 53 1 98 187 147 233 1.50e-12 68.2
Msa1130350 AT2G46130.1 48.438 64 28 2 124 187 29 87 1.65e-12 63.5
Msa1130350 AT5G28650.1 52.632 57 25 1 126 182 263 317 1.78e-12 67.8
Msa1130350 AT4G23550.1 46.774 62 31 1 121 182 136 195 1.87e-12 67.4
Msa1130350 AT1G80590.1 39.241 79 45 1 112 187 69 147 2.80e-12 65.9
Msa1130350 AT2G44745.1 45.070 71 36 1 112 182 132 199 4.41e-12 65.1
Msa1130350 AT5G01900.1 43.750 64 36 0 126 189 111 174 5.44e-12 65.5
Msa1130350 AT3G01970.1 48.529 68 30 2 124 191 64 126 6.15e-12 63.2
Msa1130350 AT4G26640.7 45.714 70 32 3 125 194 171 234 6.19e-12 67.0
Msa1130350 AT4G26640.7 44.776 67 34 1 124 190 340 403 8.82e-12 66.2
Msa1130350 AT4G26640.1 45.070 71 33 3 124 194 138 202 6.90e-12 66.6
Msa1130350 AT4G26640.1 44.776 67 34 1 124 190 308 371 1.06e-11 66.2
Msa1130350 AT5G46350.1 46.875 64 29 2 124 187 182 240 6.94e-12 65.9
Msa1130350 AT4G26640.2 45.714 70 32 3 125 194 211 274 7.31e-12 66.6
Msa1130350 AT4G26640.2 44.776 67 34 1 124 190 380 443 1.10e-11 66.2
Msa1130350 AT4G26640.5 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1130350 AT4G26640.5 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1130350 AT4G26640.6 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1130350 AT4G26640.6 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1130350 AT4G26640.4 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1130350 AT4G26640.4 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1130350 AT4G26640.3 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1130350 AT4G26640.3 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1130350 AT3G01080.3 48.438 64 29 2 125 188 205 264 7.78e-12 65.9
Msa1130350 AT3G62340.1 48.438 64 30 1 124 187 117 177 7.99e-12 65.5
Msa1130350 AT3G04670.1 50.877 57 26 1 126 182 263 317 8.71e-12 65.9
Msa1130350 AT4G26440.1 50.794 63 27 2 125 187 178 236 9.61e-12 66.2
Msa1130350 AT4G26440.1 46.269 67 33 1 124 190 371 434 2.09e-11 65.5
Msa1130350 AT1G13960.1 46.875 64 30 2 125 188 229 288 1.01e-11 66.2
Msa1130350 AT1G13960.1 47.458 59 28 1 124 182 408 463 1.32e-11 65.9
Msa1130350 AT2G25000.3 44.776 67 35 1 123 189 123 187 1.15e-11 64.3
Msa1130350 AT3G01080.2 46.970 66 31 2 125 190 205 266 1.17e-11 65.9
Msa1130350 AT2G25000.2 44.776 67 35 1 123 189 101 165 1.22e-11 63.9
Msa1130350 AT2G25000.4 44.776 67 35 1 123 189 101 165 1.22e-11 63.9
Msa1130350 AT2G03340.1 45.455 66 32 2 125 190 250 311 1.29e-11 65.9
Msa1130350 AT2G03340.1 43.284 67 35 1 124 190 414 477 2.62e-11 65.1
Msa1130350 AT2G25000.1 44.776 67 35 1 123 189 144 208 1.45e-11 64.3
Msa1130350 AT3G01080.1 46.970 66 31 2 125 190 167 228 1.49e-11 65.5
Msa1130350 AT2G04880.2 44.304 79 36 4 119 197 105 175 1.79e-11 65.5
Msa1130350 AT2G04880.2 40.299 67 37 1 124 190 282 345 6.41e-11 63.5
Msa1130350 AT1G13960.2 47.458 59 28 1 124 182 255 310 1.83e-11 65.1
Msa1130350 AT1G13960.2 46.875 64 30 2 125 188 76 135 1.86e-11 64.7
Msa1130350 AT2G04880.1 44.304 79 36 4 119 197 105 175 1.84e-11 65.5
Msa1130350 AT2G04880.1 40.299 67 37 1 124 190 306 369 8.35e-11 63.2
Msa1130350 AT4G39410.1 41.176 85 46 2 98 182 197 277 2.94e-11 63.9
Msa1130350 AT4G01720.1 37.963 108 60 4 81 187 196 297 3.33e-11 64.7
Msa1130350 AT5G45050.4 42.500 80 40 3 108 187 1026 1099 4.69e-11 64.7
Msa1130350 AT5G45050.2 42.500 80 40 3 108 187 1137 1210 4.81e-11 64.7
Msa1130350 AT5G45050.1 42.500 80 40 3 108 187 1165 1238 4.83e-11 64.7
Msa1130350 AT5G07100.1 47.458 59 28 1 124 182 233 288 5.41e-11 63.2
Msa1130350 AT5G07100.1 42.857 70 35 2 125 194 117 181 8.91e-11 62.4
Msa1130350 AT5G07100.2 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1130350 AT5G07100.2 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1130350 AT5G07100.4 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1130350 AT5G07100.4 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1130350 AT5G07100.5 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1130350 AT5G07100.5 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1130350 AT5G07100.3 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1130350 AT5G07100.3 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1130350 AT2G21900.1 40.299 67 37 1 123 189 107 170 7.46e-11 61.2
Msa1130350 AT2G40740.2 45.902 61 33 0 145 205 149 209 7.69e-11 62.0
Msa1130350 AT5G43290.1 40.541 111 50 5 120 224 109 209 9.52e-11 62.0

Find 82 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTATGATGACCTCACTTT+TGG 0.188414 7_3:+82487654 None:intergenic
TCAACATAGTAAGTGCTTTC+TGG 0.207919 7_3:+82487752 None:intergenic
TCCCTCAAAGTTAAAGATAA+AGG 0.227041 7_3:-82486463 Msa1130350:CDS
CTCAAGCTAAGCCTTTAAAA+AGG 0.231958 7_3:-82486491 Msa1130350:CDS
ATTCTGAAGTTGGTCCATTT+TGG 0.232813 7_3:+82486205 None:intergenic
CAAGAATTCATTGGTTTCAT+TGG 0.239108 7_3:+82487798 None:intergenic
TTCACTTGTTCCTTCCATTT+AGG 0.269402 7_3:+82487298 None:intergenic
CAATTCACCAATCCTTGATT+TGG 0.271018 7_3:-82486142 Msa1130350:CDS
CATTGGATGATATAATTATA+TGG 0.275590 7_3:+82487815 None:intergenic
AGGATTATCTGAAGGGTCTT+TGG 0.285031 7_3:-82487260 Msa1130350:CDS
CCGAGGGAAAATACCCTCTT+TGG 0.291656 7_3:+82486329 None:intergenic
CTTTCCTTGGATTAATTCAT+TGG 0.302740 7_3:+82487861 None:intergenic
CAAATCAAGGATTGGTGAAT+TGG 0.310097 7_3:+82486143 None:intergenic
CCCTCAAAGTTAAAGATAAA+GGG 0.333691 7_3:-82486462 Msa1130350:CDS
CCCTTTATCTTTAACTTTGA+GGG 0.337711 7_3:+82486462 None:intergenic
GCAGAAAGAGCATGCCTAAA+TGG 0.338464 7_3:-82487312 Msa1130350:intron
TACAATGGATTATGCCAAAA+TGG 0.357397 7_3:-82486219 Msa1130350:CDS
TATGGTCAAAAGGATATTCT+TGG 0.360560 7_3:-82487214 Msa1130350:CDS
TTGTAAAATGATAATGAAGA+TGG 0.362503 7_3:+82487924 None:intergenic
GAATATAGCTGGAGAAAATA+TGG 0.367378 7_3:-82487232 Msa1130350:CDS
GCCCTTTATCTTTAACTTTG+AGG 0.367772 7_3:+82486461 None:intergenic
TTTGAACCTGCTTTGTTGCT+AGG 0.370195 7_3:+82486577 None:intergenic
TAAGTTACCTCAATTATTGT+TGG 0.376442 7_3:+82486540 None:intergenic
TTTGTCAATCAAGAATTCAT+TGG 0.407531 7_3:+82487789 None:intergenic
GCTTTGCTAACTCCTTTCCT+TGG 0.408135 7_3:+82487848 None:intergenic
CTAAACAACTAGGTGAAAGT+TGG 0.421915 7_3:+82486043 None:intergenic
GGACTCTCGTTTGTAAAAGA+AGG 0.431784 7_3:+82487676 None:intergenic
GTGATATCAGATTCTGAAGT+TGG 0.434696 7_3:+82486195 None:intergenic
TACAGATGCACACATAGAAA+TGG 0.436912 7_3:-82486609 Msa1130350:CDS
GGTTTGTCAGAATATCAATT+AGG 0.438065 7_3:-82486243 Msa1130350:CDS
GAAGCAAGATATCCAAATCA+AGG 0.449238 7_3:+82486130 None:intergenic
AATGAAGATGGGCACTTAAG+TGG 0.450326 7_3:+82487936 None:intergenic
TTTAACATCAAGTTCTGCCT+TGG 0.466903 7_3:+82486371 None:intergenic
GGTGAATTGGTGACTGAAGT+TGG 0.470985 7_3:+82486156 None:intergenic
CTGGAGAAAATATGGTCAAA+AGG 0.471109 7_3:-82487224 Msa1130350:CDS
GGAGAGACTAAGACCATTGA+TGG 0.480847 7_3:-82487718 Msa1130350:CDS
GACCATTGATGGTAAAATGA+AGG 0.490394 7_3:-82487707 Msa1130350:CDS
TAAACAACTAGGTGAAAGTT+GGG 0.497314 7_3:+82486044 None:intergenic
TGTAAAATGATAATGAAGAT+GGG 0.499849 7_3:+82487925 None:intergenic
TCTGATTCAATTGATGGAGA+AGG 0.500124 7_3:+82486297 None:intergenic
ACAATGCTCTCTTCAAGAAA+AGG 0.501466 7_3:-82487618 Msa1130350:intron
CTTTGGATGATGAATATAGC+TGG 0.515960 7_3:-82487243 Msa1130350:CDS
ATCAGAAAATGAGATAATGA+TGG 0.516212 7_3:-82486280 Msa1130350:CDS
AAGATATCCAAATCAAGGAT+TGG 0.520860 7_3:+82486135 None:intergenic
TGGATATCTTGCTTCAAAGA+GGG 0.528389 7_3:-82486122 Msa1130350:CDS
GAGCATTGTGGTTAAACTCC+TGG 0.533299 7_3:+82487632 None:intergenic
TGAAGATCCAACAATAATTG+AGG 0.540253 7_3:-82486547 Msa1130350:CDS
AGAGACTAGTTTCACTTCCA+AGG 0.541625 7_3:-82486388 Msa1130350:CDS
GGATATCTTGCTTCAAAGAG+GGG 0.560641 7_3:-82486121 Msa1130350:CDS
CAGAGGAGTTGCTTAGTGAA+AGG 0.561520 7_3:+82487988 None:intergenic
GCACTTAAGTGGAGTAATGA+AGG 0.561732 7_3:+82487947 None:intergenic
TAGCAACAAAGCAGGTTCAA+AGG 0.565187 7_3:-82486575 Msa1130350:CDS
AAATATTCAGGAGTATTGAG+AGG 0.566440 7_3:+82486081 None:intergenic
CATAGTAAGTGCTTTCTGGT+AGG 0.575281 7_3:+82487756 None:intergenic
TTGGATATCTTGCTTCAAAG+AGG 0.575611 7_3:-82486123 Msa1130350:CDS
GAATATCAATTAGGCTACAA+TGG 0.579689 7_3:-82486234 Msa1130350:CDS
AGTACTTTGTAGATGATACA+AGG 0.582749 7_3:-82485976 Msa1130350:three_prime_UTR
CAATGAATTAATCCAAGGAA+AGG 0.585373 7_3:-82487860 Msa1130350:CDS
CTTACTATGTTGAATGTGAG+AGG 0.591736 7_3:-82487742 Msa1130350:CDS
AATATTCAGGAGTATTGAGA+GGG 0.594267 7_3:+82486082 None:intergenic
GAGTGTGAAATAATAGACAG+AGG 0.601050 7_3:+82487971 None:intergenic
AAAGAGCATGCCTAAATGGA+AGG 0.601574 7_3:-82487308 Msa1130350:CDS
GTGAAGATTTGCACAAACAC+AGG 0.602509 7_3:-82487280 Msa1130350:CDS
ATAACCAATGAATTAATCCA+AGG 0.604601 7_3:-82487865 Msa1130350:CDS
GAGAAGGAAAACAAAACCGA+GGG 0.610739 7_3:+82486313 None:intergenic
AGGGTGCCTAGCAACAAAGC+AGG 0.623925 7_3:-82486583 Msa1130350:CDS
ACAAACACAGGATTATCTGA+AGG 0.625241 7_3:-82487268 Msa1130350:CDS
TAGTGAAAGGTGAGACGAAG+GGG 0.627360 7_3:+82488001 None:intergenic
AAGTGAGGTCATCATAGACC+AGG 0.627405 7_3:-82487650 Msa1130350:CDS
CTTAGTGAAAGGTGAGACGA+AGG 0.627674 7_3:+82487999 None:intergenic
TTCTTGCTCTCTAAACAACT+AGG 0.642777 7_3:+82486033 None:intergenic
CAAACACAGGATTATCTGAA+GGG 0.645284 7_3:-82487267 Msa1130350:CDS
AAACGAGAGTCCCAAAAGTG+AGG 0.654222 7_3:-82487665 Msa1130350:CDS
ATAATTGAGGTAACTTACAG+AGG 0.655185 7_3:-82486534 Msa1130350:CDS
GACTTAGAAGAAACCAAAGA+GGG 0.656480 7_3:-82486342 Msa1130350:CDS
GGAGAAGGAAAACAAAACCG+AGG 0.666774 7_3:+82486312 None:intergenic
TTAGTGAAAGGTGAGACGAA+GGG 0.668436 7_3:+82488000 None:intergenic
ACTATGTTGAATGTGAGAGG+AGG 0.670945 7_3:-82487739 Msa1130350:CDS
TGACTTAGAAGAAACCAAAG+AGG 0.672282 7_3:-82486343 Msa1130350:CDS
GTACTTTGTAGATGATACAA+GGG 0.683648 7_3:-82485975 Msa1130350:three_prime_UTR
TGCACACATAGAAATGGACA+AGG 0.697085 7_3:-82486603 Msa1130350:CDS
GCACACATAGAAATGGACAA+GGG 0.758330 7_3:-82486602 Msa1130350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATAATATTTGTTTTAG+TGG - chr7_3:82486825-82486844 Msa1130350:intron 10.0%
!!! ACTTTTTTGTTAAATATTTA+AGG - chr7_3:82487007-82487026 Msa1130350:intron 10.0%
!! GAAAACATATATATATATTA+TGG - chr7_3:82487997-82488016 Msa1130350:five_prime_UTR 10.0%
!!! ATTAATAATATTTGTTTTAG+TGG - chr7_3:82486825-82486844 Msa1130350:intron 10.0%
!!! ACTTTTTTGTTAAATATTTA+AGG - chr7_3:82487007-82487026 Msa1130350:intron 10.0%
!! GAAAACATATATATATATTA+TGG - chr7_3:82487997-82488016 Msa1130350:five_prime_UTR 10.0%
!!! CATTATCATTTTACAAAAAA+TGG - chr7_3:82486022-82486041 Msa1130350:three_prime_UTR 15.0%
!! CTATGTTAATAAAAAAGTTA+AGG + chr7_3:82486422-82486441 None:intergenic 15.0%
!! AAATGATACTTGTAATAAAA+CGG - chr7_3:82486496-82486515 Msa1130350:CDS 15.0%
!!! ACTAGTATTTGTTAATAATA+AGG - chr7_3:82487080-82487099 Msa1130350:intron 15.0%
!!! AAATGTTTTCACAATTTTAT+TGG - chr7_3:82487288-82487307 Msa1130350:CDS 15.0%
!!! CATTATCATTTTACAAAAAA+TGG - chr7_3:82486022-82486041 Msa1130350:three_prime_UTR 15.0%
!! CTATGTTAATAAAAAAGTTA+AGG + chr7_3:82486422-82486441 None:intergenic 15.0%
!! AAATGATACTTGTAATAAAA+CGG - chr7_3:82486496-82486515 Msa1130350:CDS 15.0%
!!! ACTAGTATTTGTTAATAATA+AGG - chr7_3:82487080-82487099 Msa1130350:intron 15.0%
!!! AAATGTTTTCACAATTTTAT+TGG - chr7_3:82487288-82487307 Msa1130350:CDS 15.0%
!!! TGTAAAATGATAATGAAGAT+GGG + chr7_3:82486017-82486036 None:intergenic 20.0%
!!! TTGTAAAATGATAATGAAGA+TGG + chr7_3:82486018-82486037 None:intergenic 20.0%
!! CATTGGATGATATAATTATA+TGG + chr7_3:82486127-82486146 None:intergenic 20.0%
!! TATGTAATCATTTGAATTTG+TGG - chr7_3:82486603-82486622 Msa1130350:CDS 20.0%
!!! ATATTGCTCAACTATTTTTT+TGG - chr7_3:82486968-82486987 Msa1130350:intron 20.0%
!!! TTCAACATTTGTATTGTTTT+CGG - chr7_3:82487179-82487198 Msa1130350:intron 20.0%
!!! TTTTCACAATTTTATTGGTT+TGG - chr7_3:82487293-82487312 Msa1130350:CDS 20.0%
!!! TTTTATGAAGAGAAATATTC+AGG + chr7_3:82487873-82487892 None:intergenic 20.0%
!!! TGTAAAATGATAATGAAGAT+GGG + chr7_3:82486017-82486036 None:intergenic 20.0%
!!! TTGTAAAATGATAATGAAGA+TGG + chr7_3:82486018-82486037 None:intergenic 20.0%
!! CATTGGATGATATAATTATA+TGG + chr7_3:82486127-82486146 None:intergenic 20.0%
!! TATGTAATCATTTGAATTTG+TGG - chr7_3:82486603-82486622 Msa1130350:CDS 20.0%
!!! ATATTGCTCAACTATTTTTT+TGG - chr7_3:82486968-82486987 Msa1130350:intron 20.0%
!!! TTCAACATTTGTATTGTTTT+CGG - chr7_3:82487179-82487198 Msa1130350:intron 20.0%
!!! TTTTCACAATTTTATTGGTT+TGG - chr7_3:82487293-82487312 Msa1130350:CDS 20.0%
!!! TTTTATGAAGAGAAATATTC+AGG + chr7_3:82487873-82487892 None:intergenic 20.0%
! ATAACCAATGAATTAATCCA+AGG - chr7_3:82486074-82486093 Msa1130350:CDS 25.0%
! TTTGTCAATCAAGAATTCAT+TGG + chr7_3:82486153-82486172 None:intergenic 25.0%
!!! AAGCGTTTTGAATTTGATAT+AGG - chr7_3:82486863-82486882 Msa1130350:intron 25.0%
!!! CAATATTGATTTGGTTAACA+TGG + chr7_3:82486954-82486973 None:intergenic 25.0%
!! ATAGTTGAGCAATATTGATT+TGG + chr7_3:82486963-82486982 None:intergenic 25.0%
! ATCTTGAGTAATGAAATAGA+AGG + chr7_3:82487056-82487075 None:intergenic 25.0%
! TAAGTTACCTCAATTATTGT+TGG + chr7_3:82487402-82487421 None:intergenic 25.0%
!! TCATTTTCTGATTCAATTGA+TGG + chr7_3:82487651-82487670 None:intergenic 25.0%
! ATCAGAAAATGAGATAATGA+TGG - chr7_3:82487659-82487678 Msa1130350:CDS 25.0%
!!! ATGATGGAATCAAACTTTTT+TGG - chr7_3:82487675-82487694 Msa1130350:CDS 25.0%
! ATAACCAATGAATTAATCCA+AGG - chr7_3:82486074-82486093 Msa1130350:CDS 25.0%
! TTTGTCAATCAAGAATTCAT+TGG + chr7_3:82486153-82486172 None:intergenic 25.0%
!!! AAGCGTTTTGAATTTGATAT+AGG - chr7_3:82486863-82486882 Msa1130350:intron 25.0%
!!! CAATATTGATTTGGTTAACA+TGG + chr7_3:82486954-82486973 None:intergenic 25.0%
!! ATAGTTGAGCAATATTGATT+TGG + chr7_3:82486963-82486982 None:intergenic 25.0%
! ATCTTGAGTAATGAAATAGA+AGG + chr7_3:82487056-82487075 None:intergenic 25.0%
! TAAGTTACCTCAATTATTGT+TGG + chr7_3:82487402-82487421 None:intergenic 25.0%
!! TCATTTTCTGATTCAATTGA+TGG + chr7_3:82487651-82487670 None:intergenic 25.0%
! ATCAGAAAATGAGATAATGA+TGG - chr7_3:82487659-82487678 Msa1130350:CDS 25.0%
!!! ATGATGGAATCAAACTTTTT+TGG - chr7_3:82487675-82487694 Msa1130350:CDS 25.0%
CTTTCCTTGGATTAATTCAT+TGG + chr7_3:82486081-82486100 None:intergenic 30.0%
CAATGAATTAATCCAAGGAA+AGG - chr7_3:82486079-82486098 Msa1130350:CDS 30.0%
!! CAAGAATTCATTGGTTTCAT+TGG + chr7_3:82486144-82486163 None:intergenic 30.0%
! ATCCTTCATTTTACCATCAA+TGG + chr7_3:82486237-82486256 None:intergenic 30.0%
GAATATAGCTGGAGAAAATA+TGG - chr7_3:82486707-82486726 Msa1130350:intron 30.0%
TATGGTCAAAAGGATATTCT+TGG - chr7_3:82486725-82486744 Msa1130350:intron 30.0%
! AGAAGACAAAGTGCTTATTA+AGG - chr7_3:82487129-82487148 Msa1130350:intron 30.0%
TGAAGATCCAACAATAATTG+AGG - chr7_3:82487392-82487411 Msa1130350:intron 30.0%
ATAATTGAGGTAACTTACAG+AGG - chr7_3:82487405-82487424 Msa1130350:intron 30.0%
! TCAAGCTAAGCCTTTAAAAA+GGG - chr7_3:82487449-82487468 Msa1130350:intron 30.0%
TCCCTCAAAGTTAAAGATAA+AGG - chr7_3:82487476-82487495 Msa1130350:intron 30.0%
! CCCTTTATCTTTAACTTTGA+GGG + chr7_3:82487480-82487499 None:intergenic 30.0%
CCCTCAAAGTTAAAGATAAA+GGG - chr7_3:82487477-82487496 Msa1130350:intron 30.0%
GGTTTGTCAGAATATCAATT+AGG - chr7_3:82487696-82487715 Msa1130350:CDS 30.0%
GAATATCAATTAGGCTACAA+TGG - chr7_3:82487705-82487724 Msa1130350:CDS 30.0%
!! TACAATGGATTATGCCAAAA+TGG - chr7_3:82487720-82487739 Msa1130350:CDS 30.0%
AAGATATCCAAATCAAGGAT+TGG + chr7_3:82487807-82487826 None:intergenic 30.0%
!! AATATTCAGGAGTATTGAGA+GGG + chr7_3:82487860-82487879 None:intergenic 30.0%
!! AAATATTCAGGAGTATTGAG+AGG + chr7_3:82487861-82487880 None:intergenic 30.0%
TAAACAACTAGGTGAAAGTT+GGG + chr7_3:82487898-82487917 None:intergenic 30.0%
AGTACTTTGTAGATGATACA+AGG - chr7_3:82487963-82487982 Msa1130350:five_prime_UTR 30.0%
GTACTTTGTAGATGATACAA+GGG - chr7_3:82487964-82487983 Msa1130350:five_prime_UTR 30.0%
CTTTCCTTGGATTAATTCAT+TGG + chr7_3:82486081-82486100 None:intergenic 30.0%
CAATGAATTAATCCAAGGAA+AGG - chr7_3:82486079-82486098 Msa1130350:CDS 30.0%
!! CAAGAATTCATTGGTTTCAT+TGG + chr7_3:82486144-82486163 None:intergenic 30.0%
! ATCCTTCATTTTACCATCAA+TGG + chr7_3:82486237-82486256 None:intergenic 30.0%
GAATATAGCTGGAGAAAATA+TGG - chr7_3:82486707-82486726 Msa1130350:intron 30.0%
TATGGTCAAAAGGATATTCT+TGG - chr7_3:82486725-82486744 Msa1130350:intron 30.0%
! AGAAGACAAAGTGCTTATTA+AGG - chr7_3:82487129-82487148 Msa1130350:intron 30.0%
TGAAGATCCAACAATAATTG+AGG - chr7_3:82487392-82487411 Msa1130350:intron 30.0%
ATAATTGAGGTAACTTACAG+AGG - chr7_3:82487405-82487424 Msa1130350:intron 30.0%
! TCAAGCTAAGCCTTTAAAAA+GGG - chr7_3:82487449-82487468 Msa1130350:intron 30.0%
TCCCTCAAAGTTAAAGATAA+AGG - chr7_3:82487476-82487495 Msa1130350:intron 30.0%
! CCCTTTATCTTTAACTTTGA+GGG + chr7_3:82487480-82487499 None:intergenic 30.0%
CCCTCAAAGTTAAAGATAAA+GGG - chr7_3:82487477-82487496 Msa1130350:intron 30.0%
GGTTTGTCAGAATATCAATT+AGG - chr7_3:82487696-82487715 Msa1130350:CDS 30.0%
GAATATCAATTAGGCTACAA+TGG - chr7_3:82487705-82487724 Msa1130350:CDS 30.0%
!! TACAATGGATTATGCCAAAA+TGG - chr7_3:82487720-82487739 Msa1130350:CDS 30.0%
AAGATATCCAAATCAAGGAT+TGG + chr7_3:82487807-82487826 None:intergenic 30.0%
!! AATATTCAGGAGTATTGAGA+GGG + chr7_3:82487860-82487879 None:intergenic 30.0%
!! AAATATTCAGGAGTATTGAG+AGG + chr7_3:82487861-82487880 None:intergenic 30.0%
TAAACAACTAGGTGAAAGTT+GGG + chr7_3:82487898-82487917 None:intergenic 30.0%
AGTACTTTGTAGATGATACA+AGG - chr7_3:82487963-82487982 Msa1130350:five_prime_UTR 30.0%
GTACTTTGTAGATGATACAA+GGG - chr7_3:82487964-82487983 Msa1130350:five_prime_UTR 30.0%
GAGTGTGAAATAATAGACAG+AGG + chr7_3:82485971-82485990 None:intergenic 35.0%
TCAACATAGTAAGTGCTTTC+TGG + chr7_3:82486190-82486209 None:intergenic 35.0%
CTTACTATGTTGAATGTGAG+AGG - chr7_3:82486197-82486216 Msa1130350:CDS 35.0%
! GACCATTGATGGTAAAATGA+AGG - chr7_3:82486232-82486251 Msa1130350:CDS 35.0%
!! TCTATGATGACCTCACTTTT+GGG + chr7_3:82486287-82486306 None:intergenic 35.0%
!!! TTTTCTTGAAGAGAGCATTG+TGG + chr7_3:82486322-82486341 None:intergenic 35.0%
ACAATGCTCTCTTCAAGAAA+AGG - chr7_3:82486321-82486340 Msa1130350:CDS 35.0%
TTCATGTGTGTGAATTGTCA+AGG - chr7_3:82486552-82486571 Msa1130350:CDS 35.0%
ACTGAAATACGTTCAAGCTA+GGG + chr7_3:82486584-82486603 None:intergenic 35.0%
TACTGAAATACGTTCAAGCT+AGG + chr7_3:82486585-82486604 None:intergenic 35.0%
TTCACTTGTTCCTTCCATTT+AGG + chr7_3:82486644-82486663 None:intergenic 35.0%
ACAAACACAGGATTATCTGA+AGG - chr7_3:82486671-82486690 Msa1130350:intron 35.0%
CAAACACAGGATTATCTGAA+GGG - chr7_3:82486672-82486691 Msa1130350:intron 35.0%
CTTTGGATGATGAATATAGC+TGG - chr7_3:82486696-82486715 Msa1130350:intron 35.0%
CTGGAGAAAATATGGTCAAA+AGG - chr7_3:82486715-82486734 Msa1130350:intron 35.0%
! TTCTTGGAGCTAAGTTTTCA+AGG - chr7_3:82486741-82486760 Msa1130350:intron 35.0%
ATTAAGCATCTTAGTGTCAC+AGG - chr7_3:82486900-82486919 Msa1130350:intron 35.0%
GGTTAACATGGCTAAAAACA+GGG + chr7_3:82486942-82486961 None:intergenic 35.0%
TGGTTAACATGGCTAAAAAC+AGG + chr7_3:82486943-82486962 None:intergenic 35.0%
!! TTTATTGGTTTGGATTGCAG+AGG - chr7_3:82487303-82487322 Msa1130350:CDS 35.0%
TACAGATGCACACATAGAAA+TGG - chr7_3:82487330-82487349 Msa1130350:intron 35.0%
!! CTTTTTAAAGGCTTAGCTTG+AGG + chr7_3:82487450-82487469 None:intergenic 35.0%
! CTCAAGCTAAGCCTTTAAAA+AGG - chr7_3:82487448-82487467 Msa1130350:intron 35.0%
! GAGGGAAATTCCCTTTTTAA+AGG + chr7_3:82487462-82487481 None:intergenic 35.0%
! GCCCTTTATCTTTAACTTTG+AGG + chr7_3:82487481-82487500 None:intergenic 35.0%
TTTAACATCAAGTTCTGCCT+TGG + chr7_3:82487571-82487590 None:intergenic 35.0%
TGACTTAGAAGAAACCAAAG+AGG - chr7_3:82487596-82487615 Msa1130350:intron 35.0%
GACTTAGAAGAAACCAAAGA+GGG - chr7_3:82487597-82487616 Msa1130350:intron 35.0%
TCTGATTCAATTGATGGAGA+AGG + chr7_3:82487645-82487664 None:intergenic 35.0%
!!! ATTCTGAAGTTGGTCCATTT+TGG + chr7_3:82487737-82487756 None:intergenic 35.0%
!! GTGATATCAGATTCTGAAGT+TGG + chr7_3:82487747-82487766 None:intergenic 35.0%
! CAAATCAAGGATTGGTGAAT+TGG + chr7_3:82487799-82487818 None:intergenic 35.0%
CAATTCACCAATCCTTGATT+TGG - chr7_3:82487797-82487816 Msa1130350:CDS 35.0%
GAAGCAAGATATCCAAATCA+AGG + chr7_3:82487812-82487831 None:intergenic 35.0%
TTGGATATCTTGCTTCAAAG+AGG - chr7_3:82487816-82487835 Msa1130350:CDS 35.0%
TGGATATCTTGCTTCAAAGA+GGG - chr7_3:82487817-82487836 Msa1130350:CDS 35.0%
CTAAACAACTAGGTGAAAGT+TGG + chr7_3:82487899-82487918 None:intergenic 35.0%
TTCTTGCTCTCTAAACAACT+AGG + chr7_3:82487909-82487928 None:intergenic 35.0%
GAGTGTGAAATAATAGACAG+AGG + chr7_3:82485971-82485990 None:intergenic 35.0%
TCAACATAGTAAGTGCTTTC+TGG + chr7_3:82486190-82486209 None:intergenic 35.0%
CTTACTATGTTGAATGTGAG+AGG - chr7_3:82486197-82486216 Msa1130350:CDS 35.0%
! GACCATTGATGGTAAAATGA+AGG - chr7_3:82486232-82486251 Msa1130350:CDS 35.0%
!! TCTATGATGACCTCACTTTT+GGG + chr7_3:82486287-82486306 None:intergenic 35.0%
!!! TTTTCTTGAAGAGAGCATTG+TGG + chr7_3:82486322-82486341 None:intergenic 35.0%
ACAATGCTCTCTTCAAGAAA+AGG - chr7_3:82486321-82486340 Msa1130350:CDS 35.0%
TTCATGTGTGTGAATTGTCA+AGG - chr7_3:82486552-82486571 Msa1130350:CDS 35.0%
ACTGAAATACGTTCAAGCTA+GGG + chr7_3:82486584-82486603 None:intergenic 35.0%
TACTGAAATACGTTCAAGCT+AGG + chr7_3:82486585-82486604 None:intergenic 35.0%
TTCACTTGTTCCTTCCATTT+AGG + chr7_3:82486644-82486663 None:intergenic 35.0%
ACAAACACAGGATTATCTGA+AGG - chr7_3:82486671-82486690 Msa1130350:intron 35.0%
CAAACACAGGATTATCTGAA+GGG - chr7_3:82486672-82486691 Msa1130350:intron 35.0%
CTTTGGATGATGAATATAGC+TGG - chr7_3:82486696-82486715 Msa1130350:intron 35.0%
CTGGAGAAAATATGGTCAAA+AGG - chr7_3:82486715-82486734 Msa1130350:intron 35.0%
! TTCTTGGAGCTAAGTTTTCA+AGG - chr7_3:82486741-82486760 Msa1130350:intron 35.0%
ATTAAGCATCTTAGTGTCAC+AGG - chr7_3:82486900-82486919 Msa1130350:intron 35.0%
GGTTAACATGGCTAAAAACA+GGG + chr7_3:82486942-82486961 None:intergenic 35.0%
TGGTTAACATGGCTAAAAAC+AGG + chr7_3:82486943-82486962 None:intergenic 35.0%
!! TTTATTGGTTTGGATTGCAG+AGG - chr7_3:82487303-82487322 Msa1130350:CDS 35.0%
TACAGATGCACACATAGAAA+TGG - chr7_3:82487330-82487349 Msa1130350:intron 35.0%
!! CTTTTTAAAGGCTTAGCTTG+AGG + chr7_3:82487450-82487469 None:intergenic 35.0%
! CTCAAGCTAAGCCTTTAAAA+AGG - chr7_3:82487448-82487467 Msa1130350:intron 35.0%
! GAGGGAAATTCCCTTTTTAA+AGG + chr7_3:82487462-82487481 None:intergenic 35.0%
! GCCCTTTATCTTTAACTTTG+AGG + chr7_3:82487481-82487500 None:intergenic 35.0%
TTTAACATCAAGTTCTGCCT+TGG + chr7_3:82487571-82487590 None:intergenic 35.0%
TGACTTAGAAGAAACCAAAG+AGG - chr7_3:82487596-82487615 Msa1130350:intron 35.0%
GACTTAGAAGAAACCAAAGA+GGG - chr7_3:82487597-82487616 Msa1130350:intron 35.0%
TCTGATTCAATTGATGGAGA+AGG + chr7_3:82487645-82487664 None:intergenic 35.0%
!!! ATTCTGAAGTTGGTCCATTT+TGG + chr7_3:82487737-82487756 None:intergenic 35.0%
!! GTGATATCAGATTCTGAAGT+TGG + chr7_3:82487747-82487766 None:intergenic 35.0%
! CAAATCAAGGATTGGTGAAT+TGG + chr7_3:82487799-82487818 None:intergenic 35.0%
CAATTCACCAATCCTTGATT+TGG - chr7_3:82487797-82487816 Msa1130350:CDS 35.0%
GAAGCAAGATATCCAAATCA+AGG + chr7_3:82487812-82487831 None:intergenic 35.0%
TTGGATATCTTGCTTCAAAG+AGG - chr7_3:82487816-82487835 Msa1130350:CDS 35.0%
TGGATATCTTGCTTCAAAGA+GGG - chr7_3:82487817-82487836 Msa1130350:CDS 35.0%
CTAAACAACTAGGTGAAAGT+TGG + chr7_3:82487899-82487918 None:intergenic 35.0%
TTCTTGCTCTCTAAACAACT+AGG + chr7_3:82487909-82487928 None:intergenic 35.0%
TTAGTGAAAGGTGAGACGAA+GGG + chr7_3:82485942-82485961 None:intergenic 40.0%
GCACTTAAGTGGAGTAATGA+AGG + chr7_3:82485995-82486014 None:intergenic 40.0%
AATGAAGATGGGCACTTAAG+TGG + chr7_3:82486006-82486025 None:intergenic 40.0%
! CATAGTAAGTGCTTTCTGGT+AGG + chr7_3:82486186-82486205 None:intergenic 40.0%
ACTATGTTGAATGTGAGAGG+AGG - chr7_3:82486200-82486219 Msa1130350:CDS 40.0%
GGACTCTCGTTTGTAAAAGA+AGG + chr7_3:82486266-82486285 None:intergenic 40.0%
! GTCTATGATGACCTCACTTT+TGG + chr7_3:82486288-82486307 None:intergenic 40.0%
TGTGTGAATTGTCAAGGTCA+AGG - chr7_3:82486558-82486577 Msa1130350:CDS 40.0%
! AAAGAGCATGCCTAAATGGA+AGG - chr7_3:82486631-82486650 Msa1130350:intron 40.0%
GTGAAGATTTGCACAAACAC+AGG - chr7_3:82486659-82486678 Msa1130350:intron 40.0%
AGGATTATCTGAAGGGTCTT+TGG - chr7_3:82486679-82486698 Msa1130350:intron 40.0%
TGCACACATAGAAATGGACA+AGG - chr7_3:82487336-82487355 Msa1130350:intron 40.0%
GCACACATAGAAATGGACAA+GGG - chr7_3:82487337-82487356 Msa1130350:intron 40.0%
! TTTGAACCTGCTTTGTTGCT+AGG + chr7_3:82487365-82487384 None:intergenic 40.0%
TAGCAACAAAGCAGGTTCAA+AGG - chr7_3:82487364-82487383 Msa1130350:intron 40.0%
!! AGAGACTAGTTTCACTTCCA+AGG - chr7_3:82487551-82487570 Msa1130350:intron 40.0%
GAGAAGGAAAACAAAACCGA+GGG + chr7_3:82487629-82487648 None:intergenic 40.0%
GGATATCTTGCTTCAAAGAG+GGG - chr7_3:82487818-82487837 Msa1130350:CDS 40.0%
TTAGTGAAAGGTGAGACGAA+GGG + chr7_3:82485942-82485961 None:intergenic 40.0%
GCACTTAAGTGGAGTAATGA+AGG + chr7_3:82485995-82486014 None:intergenic 40.0%
AATGAAGATGGGCACTTAAG+TGG + chr7_3:82486006-82486025 None:intergenic 40.0%
! CATAGTAAGTGCTTTCTGGT+AGG + chr7_3:82486186-82486205 None:intergenic 40.0%
ACTATGTTGAATGTGAGAGG+AGG - chr7_3:82486200-82486219 Msa1130350:CDS 40.0%
GGACTCTCGTTTGTAAAAGA+AGG + chr7_3:82486266-82486285 None:intergenic 40.0%
! GTCTATGATGACCTCACTTT+TGG + chr7_3:82486288-82486307 None:intergenic 40.0%
TGTGTGAATTGTCAAGGTCA+AGG - chr7_3:82486558-82486577 Msa1130350:CDS 40.0%
! AAAGAGCATGCCTAAATGGA+AGG - chr7_3:82486631-82486650 Msa1130350:intron 40.0%
GTGAAGATTTGCACAAACAC+AGG - chr7_3:82486659-82486678 Msa1130350:intron 40.0%
AGGATTATCTGAAGGGTCTT+TGG - chr7_3:82486679-82486698 Msa1130350:intron 40.0%
TGCACACATAGAAATGGACA+AGG - chr7_3:82487336-82487355 Msa1130350:intron 40.0%
GCACACATAGAAATGGACAA+GGG - chr7_3:82487337-82487356 Msa1130350:intron 40.0%
! TTTGAACCTGCTTTGTTGCT+AGG + chr7_3:82487365-82487384 None:intergenic 40.0%
TAGCAACAAAGCAGGTTCAA+AGG - chr7_3:82487364-82487383 Msa1130350:intron 40.0%
!! AGAGACTAGTTTCACTTCCA+AGG - chr7_3:82487551-82487570 Msa1130350:intron 40.0%
GAGAAGGAAAACAAAACCGA+GGG + chr7_3:82487629-82487648 None:intergenic 40.0%
GGATATCTTGCTTCAAAGAG+GGG - chr7_3:82487818-82487837 Msa1130350:CDS 40.0%
TAGTGAAAGGTGAGACGAAG+GGG + chr7_3:82485941-82485960 None:intergenic 45.0%
CTTAGTGAAAGGTGAGACGA+AGG + chr7_3:82485943-82485962 None:intergenic 45.0%
CAGAGGAGTTGCTTAGTGAA+AGG + chr7_3:82485954-82485973 None:intergenic 45.0%
GCTTTGCTAACTCCTTTCCT+TGG + chr7_3:82486094-82486113 None:intergenic 45.0%
GGAGAGACTAAGACCATTGA+TGG - chr7_3:82486221-82486240 Msa1130350:CDS 45.0%
AAACGAGAGTCCCAAAAGTG+AGG - chr7_3:82486274-82486293 Msa1130350:CDS 45.0%
AAGTGAGGTCATCATAGACC+AGG - chr7_3:82486289-82486308 Msa1130350:CDS 45.0%
! GAGCATTGTGGTTAAACTCC+TGG + chr7_3:82486310-82486329 None:intergenic 45.0%
! GCAGAAAGAGCATGCCTAAA+TGG - chr7_3:82486627-82486646 Msa1130350:intron 45.0%
!!! CCAAAGAGGGTATTTTCCCT+CGG - chr7_3:82487610-82487629 Msa1130350:intron 45.0%
GGAGAAGGAAAACAAAACCG+AGG + chr7_3:82487630-82487649 None:intergenic 45.0%
! GGTGAATTGGTGACTGAAGT+TGG + chr7_3:82487786-82487805 None:intergenic 45.0%
TAGTGAAAGGTGAGACGAAG+GGG + chr7_3:82485941-82485960 None:intergenic 45.0%
CTTAGTGAAAGGTGAGACGA+AGG + chr7_3:82485943-82485962 None:intergenic 45.0%
CAGAGGAGTTGCTTAGTGAA+AGG + chr7_3:82485954-82485973 None:intergenic 45.0%
GCTTTGCTAACTCCTTTCCT+TGG + chr7_3:82486094-82486113 None:intergenic 45.0%
GGAGAGACTAAGACCATTGA+TGG - chr7_3:82486221-82486240 Msa1130350:CDS 45.0%
AAACGAGAGTCCCAAAAGTG+AGG - chr7_3:82486274-82486293 Msa1130350:CDS 45.0%
AAGTGAGGTCATCATAGACC+AGG - chr7_3:82486289-82486308 Msa1130350:CDS 45.0%
! GAGCATTGTGGTTAAACTCC+TGG + chr7_3:82486310-82486329 None:intergenic 45.0%
! GCAGAAAGAGCATGCCTAAA+TGG - chr7_3:82486627-82486646 Msa1130350:intron 45.0%
!!! CCAAAGAGGGTATTTTCCCT+CGG - chr7_3:82487610-82487629 Msa1130350:intron 45.0%
GGAGAAGGAAAACAAAACCG+AGG + chr7_3:82487630-82487649 None:intergenic 45.0%
! GGTGAATTGGTGACTGAAGT+TGG + chr7_3:82487786-82487805 None:intergenic 45.0%
CCGAGGGAAAATACCCTCTT+TGG + chr7_3:82487613-82487632 None:intergenic 50.0%
CCGAGGGAAAATACCCTCTT+TGG + chr7_3:82487613-82487632 None:intergenic 50.0%
! AGGGTGCCTAGCAACAAAGC+AGG - chr7_3:82487356-82487375 Msa1130350:intron 55.0%
! AGGGTGCCTAGCAACAAAGC+AGG - chr7_3:82487356-82487375 Msa1130350:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82485937 82488024 82485937 ID=Msa1130350;Name=Msa1130350
chr7_3 mRNA 82485937 82488024 82485937 ID=Msa1130350-mRNA-1;Parent=Msa1130350;Name=Msa1130350-mRNA-1;_AED=0.16;_eAED=0.16;_QI=104|1|1|1|1|1|3|134|333
chr7_3 exon 82485937 82486638 82485937 ID=Msa1130350-mRNA-1:exon:24317;Parent=Msa1130350-mRNA-1
chr7_3 exon 82487199 82487330 82487199 ID=Msa1130350-mRNA-1:exon:24316;Parent=Msa1130350-mRNA-1
chr7_3 exon 82487619 82488024 82487619 ID=Msa1130350-mRNA-1:exon:24315;Parent=Msa1130350-mRNA-1
chr7_3 five_prime_UTR 82487921 82488024 82487921 ID=Msa1130350-mRNA-1:five_prime_utr;Parent=Msa1130350-mRNA-1
chr7_3 CDS 82487619 82487920 82487619 ID=Msa1130350-mRNA-1:cds;Parent=Msa1130350-mRNA-1
chr7_3 CDS 82487199 82487330 82487199 ID=Msa1130350-mRNA-1:cds;Parent=Msa1130350-mRNA-1
chr7_3 CDS 82486071 82486638 82486071 ID=Msa1130350-mRNA-1:cds;Parent=Msa1130350-mRNA-1
chr7_3 three_prime_UTR 82485937 82486070 82485937 ID=Msa1130350-mRNA-1:three_prime_utr;Parent=Msa1130350-mRNA-1
Gene Sequence

>Msa1130350

ATGGAAGAGACTACAAAGAGAAAACGTGTTAGTATAACCAATGAATTAATCCAAGGAAAGGAGTTAGCAAAGCAGCTAAGTAACCATATAATTATATCATCCAATGAAACCAATGAATTCTTGATTGACAAAATAATTTCAACCTACCAGAAAGCACTTACTATGTTGAATGTGAGAGGAGGAGAGACTAAGACCATTGATGGTAAAATGAAGGATTCTCATCCTTCTTTTACAAACGAGAGTCCCAAAAGTGAGGTCATCATAGACCAGGAGTTTAACCACAATGCTCTCTTCAAGAAAAGAAAGAGCATGCCTAAATGGAAGGAACAAGTGAAGATTTGCACAAACACAGGATTATCTGAAGGGTCTTTGGATGATGAATATAGCTGGAGAAAATATGGTCAAAAGGATATTCTTGGAGCTAAGTTTTCAAGAGGATATTACAGATGCACACATAGAAATGGACAAGGGTGCCTAGCAACAAAGCAGGTTCAAAGGTCAGATGAAGATCCAACAATAATTGAGGTAACTTACAGAGGAAGACACACATGCACTCATCCTCAAGCTAAGCCTTTAAAAAGGGAATTTCCCTCAAAGTTAAAGATAAAGGGCTTAGAGAAAAATAAACTTCACAATGATAAAAAGAATCAACTACAAACTCAAGAGACTAGTTTCACTTCCAAGGCAGAACTTGATGTTAAAAGAAATGACTTAGAAGAAACCAAAGAGGGTATTTTCCCTCGGTTTTGTTTTCCTTCTCCATCAATTGAATCAGAAAATGAGATAATGATGGAATCAAACTTTTTTGGTTTGTCAGAATATCAATTAGGCTACAATGGATTATGCCAAAATGGACCAACTTCAGAATCTGATATCACTGATACAGTTTCAGCTCCAACTTCAGTCACCAATTCACCAATCCTTGATTTGGATATCTTGCTTCAAAGAGGGGATTTTGACACTGATTTCCCTCTCAATACTCCTGAATATTTCTCTTCATAA
Protein sequence

>Msa1130350

MEETTKRKRVSITNELIQGKELAKQLSNHIIISSNETNEFLIDKIISTYQKALTMLNVRGGETKTIDGKMKDSHPSFTNESPKSEVIIDQEFNHNALFKKRKSMPKWKEQVKICTNTGLSEGSLDDEYSWRKYGQKDILGAKFSRGYYRCTHRNGQGCLATKQVQRSDEDPTIIEVTYRGRHTCTHPQAKPLKREFPSKLKIKGLEKNKLHNDKKNQLQTQETSFTSKAELDVKRNDLEETKEGIFPRFCFPSPSIESENEIMMESNFFGLSEYQLGYNGLCQNGPTSESDITDTVSAPTSVTNSPILDLDILLQRGDFDTDFPLNTPEYFSS*