AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1441200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441200 MtrunA17_Chr7g0275531 91.642 335 19 2 1 333 1 328 0.0 619
Msa1441200 MtrunA17_Chr8g0347251 44.837 368 141 15 1 329 1 345 2.43e-78 243
Msa1441200 MtrunA17_Chr8g0387981 36.585 369 189 12 1 332 1 361 1.51e-55 184
Msa1441200 MtrunA17_Chr3g0126391 53.125 192 67 9 12 185 7 193 1.17e-53 179
Msa1441200 MtrunA17_Chr7g0244981 33.500 200 108 5 9 198 11 195 3.74e-26 105
Msa1441200 MtrunA17_Chr7g0244971 32.275 189 97 5 9 184 12 182 3.73e-25 102
Msa1441200 MtrunA17_Chr8g0334541 36.364 176 85 5 15 184 8 162 1.60e-24 100
Msa1441200 MtrunA17_Chr2g0315371 30.622 209 109 6 11 195 15 211 6.66e-21 91.3
Msa1441200 MtrunA17_Chr8g0350621 30.556 180 96 7 15 184 10 170 1.82e-20 89.4
Msa1441200 MtrunA17_Chr5g0428351 31.892 185 101 6 7 189 87 248 1.47e-19 87.8
Msa1441200 MtrunA17_Chr3g0128671 30.570 193 103 5 18 196 23 198 1.75e-19 87.4
Msa1441200 MtrunA17_Chr2g0315381 45.349 86 37 2 100 184 127 203 6.32e-19 85.9
Msa1441200 MtrunA17_Chr2g0315361 45.349 86 38 2 99 184 131 207 1.00e-17 82.4
Msa1441200 MtrunA17_Chr1g0147881 43.529 85 44 2 98 182 237 317 2.75e-16 78.6
Msa1441200 MtrunA17_Chr7g0270051 40.870 115 63 3 78 189 3 115 4.16e-16 77.0
Msa1441200 MtrunA17_Chr7g0224801 55.224 67 25 2 124 190 92 153 1.16e-15 73.9
Msa1441200 MtrunA17_Chr7g0270191 40.594 101 56 2 88 187 107 204 1.45e-15 75.9
Msa1441200 MtrunA17_Chr8g0348311 38.679 106 59 3 82 187 114 213 3.19e-15 75.5
Msa1441200 MtrunA17_Chr4g0071521 32.624 141 72 3 42 182 183 300 3.43e-15 75.1
Msa1441200 MtrunA17_Chr8g0387501 47.297 74 33 3 121 194 125 192 4.25e-15 74.3
Msa1441200 MtrunA17_Chr8g0379461 36.885 122 65 3 99 215 45 159 7.03e-15 73.2
Msa1441200 MtrunA17_Chr7g0248691 51.515 66 26 2 126 191 155 214 2.93e-14 72.4
Msa1441200 MtrunA17_Chr5g0401821 54.386 57 24 1 126 182 200 254 3.38e-14 71.6
Msa1441200 MtrunA17_Chr2g0293481 41.748 103 52 4 126 222 268 368 4.40e-14 72.8
Msa1441200 MtrunA17_Chr2g0319961 43.750 96 48 3 99 190 50 143 5.86e-14 70.9
Msa1441200 MtrunA17_Chr5g0418781 52.381 63 26 2 124 186 123 181 7.27e-14 70.9
Msa1441200 MtrunA17_Chr2g0284321 46.479 71 32 2 126 196 36 100 8.55e-14 69.7
Msa1441200 MtrunA17_Chr1g0184691 52.632 57 25 1 126 182 294 348 2.04e-13 70.5
Msa1441200 MtrunA17_Chr8g0386241 46.269 67 31 2 124 190 102 163 2.51e-13 67.4
Msa1441200 MtrunA17_Chr4g0053281 50.877 57 26 1 126 182 267 321 5.25e-13 68.9
Msa1441200 MtrunA17_Chr4g0042831 44.118 68 35 1 125 192 145 209 5.50e-13 69.3
Msa1441200 MtrunA17_Chr4g0042831 41.772 79 43 1 112 190 265 340 1.82e-11 64.7
Msa1441200 MtrunA17_Chr1g0194481 50.000 64 27 2 124 187 157 215 5.50e-13 68.9
Msa1441200 MtrunA17_Chr4g0051881 47.143 70 32 2 124 193 177 241 5.93e-13 68.9
Msa1441200 MtrunA17_Chr5g0443131 49.153 59 27 1 124 182 156 211 6.01e-13 68.6
Msa1441200 MtrunA17_Chr3g0079691 45.714 70 32 3 125 194 280 343 6.08e-13 69.7
Msa1441200 MtrunA17_Chr3g0079691 33.663 101 59 2 124 219 494 591 5.33e-11 63.9
Msa1441200 MtrunA17_Chr7g0228941 52.632 57 25 1 126 182 53 107 6.38e-13 65.1
Msa1441200 MtrunA17_Chr3g0129361 44.444 72 37 1 112 183 131 199 9.40e-13 66.6
Msa1441200 MtrunA17_Chr2g0294231 48.438 64 30 1 124 187 202 262 1.05e-12 68.2
Msa1441200 MtrunA17_Chr8g0383351 50.000 60 27 1 124 183 159 215 1.10e-12 66.6
Msa1441200 MtrunA17_Chr7g0218081 46.875 64 30 2 125 188 228 287 1.25e-12 68.6
Msa1441200 MtrunA17_Chr7g0218081 44.776 67 34 1 124 190 409 472 3.17e-12 67.4
Msa1441200 MtrunA17_Chr5g0418191 46.269 67 33 1 124 190 319 382 1.32e-12 68.2
Msa1441200 MtrunA17_Chr5g0418191 35.652 115 65 4 125 239 151 256 4.51e-11 63.5
Msa1441200 MtrunA17_Chr7g0263531 31.667 120 78 2 126 245 190 305 1.49e-12 68.2
Msa1441200 MtrunA17_Chr7g0238921 49.275 69 28 2 114 182 117 178 1.87e-12 67.0
Msa1441200 MtrunA17_Chr5g0445311 44.776 67 34 1 124 190 363 426 2.37e-12 67.8
Msa1441200 MtrunA17_Chr5g0445311 45.833 72 33 3 123 194 198 263 3.98e-12 67.0
Msa1441200 MtrunA17_Chr5g0431811 43.284 67 38 0 125 191 672 738 2.57e-12 67.8
Msa1441200 MtrunA17_Chr1g0202461 44.928 69 32 2 126 194 262 324 2.82e-12 67.0
Msa1441200 MtrunA17_Chr3g0139021 52.632 57 25 1 126 182 315 369 3.13e-12 67.0
Msa1441200 MtrunA17_Chr3g0101131 47.143 70 31 3 125 194 243 306 3.16e-12 67.4
Msa1441200 MtrunA17_Chr3g0101131 44.776 67 34 1 124 190 414 477 5.25e-12 66.6
Msa1441200 MtrunA17_Chr8g0335811 45.070 71 36 1 112 182 141 208 4.03e-12 65.1
Msa1441200 MtrunA17_Chr4g0068541 45.312 64 32 1 124 187 207 267 8.69e-12 65.9
Msa1441200 MtrunA17_Chr7g0249311 44.615 65 32 2 125 189 179 239 9.17e-12 66.2
Msa1441200 MtrunA17_Chr7g0248721 43.902 82 40 3 124 205 140 215 1.12e-11 63.5
Msa1441200 MtrunA17_Chr2g0322391 48.485 66 32 1 124 189 348 411 2.97e-11 64.3
Msa1441200 MtrunA17_Chr5g0432161 44.776 67 34 1 124 190 420 483 3.11e-11 64.3
Msa1441200 MtrunA17_Chr1g0150801 38.824 85 45 3 107 189 82 161 6.85e-11 60.1
Msa1441200 MtrunA17_Chr3g0106491 43.284 67 35 1 124 190 364 427 9.09e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441200 AT4G11070.1 38.728 346 147 13 3 324 2 306 2.52e-51 172
Msa1441200 AT4G11070.2 37.423 326 147 11 3 324 2 274 9.61e-47 160
Msa1441200 AT5G24110.1 37.066 259 120 10 12 265 17 237 8.00e-43 150
Msa1441200 AT4G23810.1 42.478 226 85 7 11 195 13 234 8.79e-43 150
Msa1441200 AT2G46400.1 37.542 301 153 10 12 309 8 276 9.74e-41 144
Msa1441200 AT3G56400.1 32.995 197 98 5 3 184 2 179 9.72e-27 107
Msa1441200 AT2G40750.1 27.941 272 160 7 5 244 8 275 1.27e-23 100
Msa1441200 AT2G40740.1 42.202 109 61 1 99 205 145 253 2.70e-22 95.5
Msa1441200 AT2G40740.3 42.202 109 61 1 99 205 154 262 3.38e-22 95.1
Msa1441200 AT5G45260.1 47.423 97 41 4 99 195 1188 1274 8.65e-19 88.2
Msa1441200 AT1G66550.1 29.282 181 90 6 16 184 13 167 5.63e-16 77.0
Msa1441200 AT1G66600.1 40.909 88 45 1 104 184 75 162 2.64e-15 74.7
Msa1441200 AT5G52830.1 54.839 62 26 1 126 187 166 225 3.16e-15 75.9
Msa1441200 AT1G29280.1 53.226 62 25 2 126 187 75 132 6.00e-15 73.9
Msa1441200 AT1G66550.2 38.636 88 47 1 104 184 75 162 1.35e-14 72.8
Msa1441200 AT4G31550.2 44.048 84 43 2 99 182 221 300 1.88e-14 73.6
Msa1441200 AT5G49520.1 50.000 64 29 1 124 187 220 280 2.21e-14 73.9
Msa1441200 AT4G31550.1 54.386 57 24 1 126 182 247 301 4.87e-14 72.4
Msa1441200 AT4G01250.1 51.613 62 26 2 126 187 129 186 8.80e-14 71.2
Msa1441200 AT1G30650.1 41.905 105 48 6 95 194 184 280 9.42e-14 72.0
Msa1441200 AT2G30590.1 50.794 63 27 2 126 188 314 372 9.82e-14 72.0
Msa1441200 AT2G34830.1 35.938 128 58 6 78 187 152 273 1.42e-13 71.6
Msa1441200 AT2G34830.2 35.938 128 58 6 78 187 161 282 1.50e-13 71.6
Msa1441200 AT1G66560.1 46.667 60 32 0 125 184 103 162 1.51e-13 70.1
Msa1441200 AT1G69310.4 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
Msa1441200 AT1G69310.2 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
Msa1441200 AT1G69310.1 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
Msa1441200 AT2G24570.1 54.386 57 24 1 126 182 244 298 4.06e-13 69.7
Msa1441200 AT2G37260.3 35.345 116 60 3 72 182 218 323 4.90e-13 69.7
Msa1441200 AT2G37260.2 35.345 116 60 3 72 182 216 321 5.03e-13 69.3
Msa1441200 AT2G37260.1 35.345 116 60 3 72 182 298 403 5.88e-13 69.7
Msa1441200 AT5G41570.1 43.038 79 40 2 112 190 85 158 7.97e-13 66.6
Msa1441200 AT5G13080.1 51.562 64 26 2 124 187 66 124 8.48e-13 65.5
Msa1441200 AT3G58710.2 43.011 93 45 4 99 187 40 128 9.41e-13 67.8
Msa1441200 AT4G24240.1 41.667 84 45 2 99 182 257 336 1.12e-12 68.6
Msa1441200 AT1G29860.1 40.476 84 45 2 110 193 121 199 1.15e-12 67.8
Msa1441200 AT1G64000.1 40.659 91 43 3 112 196 101 186 1.23e-12 66.2
Msa1441200 AT2G23320.1 50.877 57 26 1 126 182 241 295 1.25e-12 68.2
Msa1441200 AT3G58710.1 50.000 62 27 2 126 187 72 129 1.40e-12 67.4
Msa1441200 AT4G18170.1 35.238 105 63 2 83 187 130 229 1.47e-12 67.8
Msa1441200 AT2G47260.1 37.778 90 53 1 98 187 147 233 1.50e-12 68.2
Msa1441200 AT2G46130.1 48.438 64 28 2 124 187 29 87 1.65e-12 63.5
Msa1441200 AT5G28650.1 52.632 57 25 1 126 182 263 317 1.78e-12 67.8
Msa1441200 AT4G23550.1 46.774 62 31 1 121 182 136 195 1.87e-12 67.4
Msa1441200 AT1G80590.1 39.241 79 45 1 112 187 69 147 2.80e-12 65.9
Msa1441200 AT2G44745.1 45.070 71 36 1 112 182 132 199 4.41e-12 65.1
Msa1441200 AT5G01900.1 43.750 64 36 0 126 189 111 174 5.44e-12 65.5
Msa1441200 AT3G01970.1 48.529 68 30 2 124 191 64 126 6.15e-12 63.2
Msa1441200 AT4G26640.7 45.714 70 32 3 125 194 171 234 6.19e-12 67.0
Msa1441200 AT4G26640.7 44.776 67 34 1 124 190 340 403 8.82e-12 66.2
Msa1441200 AT4G26640.1 45.070 71 33 3 124 194 138 202 6.90e-12 66.6
Msa1441200 AT4G26640.1 44.776 67 34 1 124 190 308 371 1.06e-11 66.2
Msa1441200 AT5G46350.1 46.875 64 29 2 124 187 182 240 6.94e-12 65.9
Msa1441200 AT4G26640.2 45.714 70 32 3 125 194 211 274 7.31e-12 66.6
Msa1441200 AT4G26640.2 44.776 67 34 1 124 190 380 443 1.10e-11 66.2
Msa1441200 AT4G26640.5 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1441200 AT4G26640.5 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1441200 AT4G26640.6 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1441200 AT4G26640.6 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1441200 AT4G26640.4 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1441200 AT4G26640.4 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1441200 AT4G26640.3 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
Msa1441200 AT4G26640.3 44.776 67 34 1 124 190 204 267 1.22e-11 65.5
Msa1441200 AT3G01080.3 48.438 64 29 2 125 188 205 264 7.78e-12 65.9
Msa1441200 AT3G62340.1 48.438 64 30 1 124 187 117 177 7.99e-12 65.5
Msa1441200 AT3G04670.1 50.877 57 26 1 126 182 263 317 8.71e-12 65.9
Msa1441200 AT4G26440.1 50.794 63 27 2 125 187 178 236 9.61e-12 66.2
Msa1441200 AT4G26440.1 46.269 67 33 1 124 190 371 434 2.09e-11 65.5
Msa1441200 AT1G13960.1 46.875 64 30 2 125 188 229 288 1.01e-11 66.2
Msa1441200 AT1G13960.1 47.458 59 28 1 124 182 408 463 1.32e-11 65.9
Msa1441200 AT2G25000.3 44.776 67 35 1 123 189 123 187 1.15e-11 64.3
Msa1441200 AT3G01080.2 46.970 66 31 2 125 190 205 266 1.17e-11 65.9
Msa1441200 AT2G25000.2 44.776 67 35 1 123 189 101 165 1.22e-11 63.9
Msa1441200 AT2G25000.4 44.776 67 35 1 123 189 101 165 1.22e-11 63.9
Msa1441200 AT2G03340.1 45.455 66 32 2 125 190 250 311 1.29e-11 65.9
Msa1441200 AT2G03340.1 43.284 67 35 1 124 190 414 477 2.62e-11 65.1
Msa1441200 AT2G25000.1 44.776 67 35 1 123 189 144 208 1.45e-11 64.3
Msa1441200 AT3G01080.1 46.970 66 31 2 125 190 167 228 1.49e-11 65.5
Msa1441200 AT2G04880.2 44.304 79 36 4 119 197 105 175 1.79e-11 65.5
Msa1441200 AT2G04880.2 40.299 67 37 1 124 190 282 345 6.41e-11 63.5
Msa1441200 AT1G13960.2 47.458 59 28 1 124 182 255 310 1.83e-11 65.1
Msa1441200 AT1G13960.2 46.875 64 30 2 125 188 76 135 1.86e-11 64.7
Msa1441200 AT2G04880.1 44.304 79 36 4 119 197 105 175 1.84e-11 65.5
Msa1441200 AT2G04880.1 40.299 67 37 1 124 190 306 369 8.35e-11 63.2
Msa1441200 AT4G39410.1 41.176 85 46 2 98 182 197 277 2.94e-11 63.9
Msa1441200 AT4G01720.1 37.963 108 60 4 81 187 196 297 3.33e-11 64.7
Msa1441200 AT5G45050.4 42.500 80 40 3 108 187 1026 1099 4.69e-11 64.7
Msa1441200 AT5G45050.2 42.500 80 40 3 108 187 1137 1210 4.81e-11 64.7
Msa1441200 AT5G45050.1 42.500 80 40 3 108 187 1165 1238 4.83e-11 64.7
Msa1441200 AT5G07100.1 47.458 59 28 1 124 182 233 288 5.41e-11 63.2
Msa1441200 AT5G07100.1 42.857 70 35 2 125 194 117 181 8.91e-11 62.4
Msa1441200 AT5G07100.2 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1441200 AT5G07100.2 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1441200 AT5G07100.4 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1441200 AT5G07100.4 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1441200 AT5G07100.5 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1441200 AT5G07100.5 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1441200 AT5G07100.3 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
Msa1441200 AT5G07100.3 42.857 70 35 2 125 194 24 88 9.03e-11 61.2
Msa1441200 AT2G21900.1 40.299 67 37 1 123 189 107 170 7.46e-11 61.2
Msa1441200 AT2G40740.2 45.902 61 33 0 145 205 149 209 7.69e-11 62.0
Msa1441200 AT5G43290.1 40.541 111 50 5 120 224 109 209 9.52e-11 62.0

Find 82 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTATGATGACCTCACTTT+TGG 0.188414 tig0029236:-785 None:intergenic
TCAACATAGTAAGTGCTTTC+TGG 0.207919 tig0029236:-687 None:intergenic
TCCCTCAAAGTTAAAGATAA+AGG 0.227041 tig0029236:+1976 Msa1441200:CDS
CTCAAGCTAAGCCTTTAAAA+AGG 0.231958 tig0029236:+1948 Msa1441200:CDS
ATTCTGAAGTTGGTCCATTT+TGG 0.232813 tig0029236:-2234 None:intergenic
CAAGAATTCATTGGTTTCAT+TGG 0.239108 tig0029236:-641 None:intergenic
TTCACTTGTTCCTTCCATTT+AGG 0.269402 tig0029236:-1141 None:intergenic
CAATTCACCAATCCTTGATT+TGG 0.271018 tig0029236:+2297 Msa1441200:CDS
CATTGGATGATATAATTATA+TGG 0.275590 tig0029236:-624 None:intergenic
AGGATTATCTGAAGGGTCTT+TGG 0.285031 tig0029236:+1179 Msa1441200:CDS
CCGAGGGAAAATACCCTCTT+TGG 0.291656 tig0029236:-2110 None:intergenic
CTTTCCTTGGATTAATTCAT+TGG 0.302740 tig0029236:-578 None:intergenic
CAAATCAAGGATTGGTGAAT+TGG 0.310097 tig0029236:-2296 None:intergenic
CCCTCAAAGTTAAAGATAAA+GGG 0.333691 tig0029236:+1977 Msa1441200:CDS
CCCTTTATCTTTAACTTTGA+GGG 0.337711 tig0029236:-1977 None:intergenic
GCAGAAAGAGCATGCCTAAA+TGG 0.338464 tig0029236:+1127 Msa1441200:intron
TACAATGGATTATGCCAAAA+TGG 0.357397 tig0029236:+2220 Msa1441200:CDS
TATGGTCAAAAGGATATTCT+TGG 0.360560 tig0029236:+1225 Msa1441200:CDS
TTGTAAAATGATAATGAAGA+TGG 0.362503 tig0029236:-515 None:intergenic
GAATATAGCTGGAGAAAATA+TGG 0.367378 tig0029236:+1207 Msa1441200:CDS
GCCCTTTATCTTTAACTTTG+AGG 0.367772 tig0029236:-1978 None:intergenic
TTTGAACCTGCTTTGTTGCT+AGG 0.370195 tig0029236:-1862 None:intergenic
TAAGTTACCTCAATTATTGT+TGG 0.376442 tig0029236:-1899 None:intergenic
TTTGTCAATCAAGAATTCAT+TGG 0.407531 tig0029236:-650 None:intergenic
GCTTTGCTAACTCCTTTCCT+TGG 0.408135 tig0029236:-591 None:intergenic
CTAAACAACTAGGTGAAAGT+TGG 0.421915 tig0029236:-2396 None:intergenic
GGACTCTCGTTTGTAAAAGA+AGG 0.431784 tig0029236:-763 None:intergenic
GTGATATCAGATTCTGAAGT+TGG 0.434696 tig0029236:-2244 None:intergenic
TACAGATGCACACATAGAAA+TGG 0.436912 tig0029236:+1830 Msa1441200:CDS
GGTTTGTCAGAATATCAATT+AGG 0.438065 tig0029236:+2196 Msa1441200:CDS
GAAGCAAGATATCCAAATCA+AGG 0.449238 tig0029236:-2309 None:intergenic
AATGAAGATGGGCACTTAAG+TGG 0.450326 tig0029236:-503 None:intergenic
TTTAACATCAAGTTCTGCCT+TGG 0.466903 tig0029236:-2068 None:intergenic
GGTGAATTGGTGACTGAAGT+TGG 0.470985 tig0029236:-2283 None:intergenic
CTGGAGAAAATATGGTCAAA+AGG 0.471109 tig0029236:+1215 Msa1441200:CDS
GGAGAGACTAAGACCATTGA+TGG 0.480847 tig0029236:+721 Msa1441200:CDS
GACCATTGATGGTAAAATGA+AGG 0.490394 tig0029236:+732 Msa1441200:CDS
TAAACAACTAGGTGAAAGTT+GGG 0.497314 tig0029236:-2395 None:intergenic
TGTAAAATGATAATGAAGAT+GGG 0.499849 tig0029236:-514 None:intergenic
TCTGATTCAATTGATGGAGA+AGG 0.500124 tig0029236:-2142 None:intergenic
ACAATGCTCTCTTCAAGAAA+AGG 0.501466 tig0029236:+821 Msa1441200:CDS
CTTTGGATGATGAATATAGC+TGG 0.515960 tig0029236:+1196 Msa1441200:CDS
ATCAGAAAATGAGATAATGA+TGG 0.516212 tig0029236:+2159 Msa1441200:CDS
AAGATATCCAAATCAAGGAT+TGG 0.520860 tig0029236:-2304 None:intergenic
TGGATATCTTGCTTCAAAGA+GGG 0.528389 tig0029236:+2317 Msa1441200:CDS
GAGCATTGTGGTTAAACTCC+TGG 0.533299 tig0029236:-807 None:intergenic
TGAAGATCCAACAATAATTG+AGG 0.540253 tig0029236:+1892 Msa1441200:CDS
AGAGACTAGTTTCACTTCCA+AGG 0.541625 tig0029236:+2051 Msa1441200:CDS
GGATATCTTGCTTCAAAGAG+GGG 0.560641 tig0029236:+2318 Msa1441200:CDS
CAGAGGAGTTGCTTAGTGAA+AGG 0.561520 tig0029236:-451 None:intergenic
GCACTTAAGTGGAGTAATGA+AGG 0.561732 tig0029236:-492 None:intergenic
TAGCAACAAAGCAGGTTCAA+AGG 0.565187 tig0029236:+1864 Msa1441200:CDS
AAATATTCAGGAGTATTGAG+AGG 0.566440 tig0029236:-2358 None:intergenic
CATAGTAAGTGCTTTCTGGT+AGG 0.575281 tig0029236:-683 None:intergenic
TTGGATATCTTGCTTCAAAG+AGG 0.575611 tig0029236:+2316 Msa1441200:CDS
GAATATCAATTAGGCTACAA+TGG 0.579689 tig0029236:+2205 Msa1441200:CDS
AGTACTTTGTAGATGATACA+AGG 0.582749 tig0029236:+2463 Msa1441200:three_prime_UTR
CAATGAATTAATCCAAGGAA+AGG 0.585373 tig0029236:+579 Msa1441200:CDS
CTTACTATGTTGAATGTGAG+AGG 0.591736 tig0029236:+697 Msa1441200:CDS
AATATTCAGGAGTATTGAGA+GGG 0.594267 tig0029236:-2357 None:intergenic
GAGTGTGAAATAATAGACAG+AGG 0.601050 tig0029236:-468 None:intergenic
AAAGAGCATGCCTAAATGGA+AGG 0.601574 tig0029236:+1131 Msa1441200:CDS
GTGAAGATTTGCACAAACAC+AGG 0.602509 tig0029236:+1159 Msa1441200:CDS
ATAACCAATGAATTAATCCA+AGG 0.604601 tig0029236:+574 Msa1441200:CDS
GAGAAGGAAAACAAAACCGA+GGG 0.610739 tig0029236:-2126 None:intergenic
AGGGTGCCTAGCAACAAAGC+AGG 0.623925 tig0029236:+1856 Msa1441200:CDS
ACAAACACAGGATTATCTGA+AGG 0.625241 tig0029236:+1171 Msa1441200:CDS
TAGTGAAAGGTGAGACGAAG+GGG 0.627360 tig0029236:-438 None:intergenic
AAGTGAGGTCATCATAGACC+AGG 0.627405 tig0029236:+789 Msa1441200:CDS
CTTAGTGAAAGGTGAGACGA+AGG 0.627674 tig0029236:-440 None:intergenic
TTCTTGCTCTCTAAACAACT+AGG 0.642777 tig0029236:-2406 None:intergenic
CAAACACAGGATTATCTGAA+GGG 0.645284 tig0029236:+1172 Msa1441200:CDS
AAACGAGAGTCCCAAAAGTG+AGG 0.654222 tig0029236:+774 Msa1441200:CDS
ATAATTGAGGTAACTTACAG+AGG 0.655185 tig0029236:+1905 Msa1441200:CDS
GACTTAGAAGAAACCAAAGA+GGG 0.656480 tig0029236:+2097 Msa1441200:CDS
GGAGAAGGAAAACAAAACCG+AGG 0.666774 tig0029236:-2127 None:intergenic
TTAGTGAAAGGTGAGACGAA+GGG 0.668436 tig0029236:-439 None:intergenic
ACTATGTTGAATGTGAGAGG+AGG 0.670945 tig0029236:+700 Msa1441200:CDS
TGACTTAGAAGAAACCAAAG+AGG 0.672282 tig0029236:+2096 Msa1441200:CDS
GTACTTTGTAGATGATACAA+GGG 0.683648 tig0029236:+2464 Msa1441200:three_prime_UTR
TGCACACATAGAAATGGACA+AGG 0.697085 tig0029236:+1836 Msa1441200:CDS
GCACACATAGAAATGGACAA+GGG 0.758330 tig0029236:+1837 Msa1441200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTTTGTTAAATATTTA+AGG + tig0029236:1507-1526 Msa1441200:intron 10.0%
!! GAAAACATATATATATATTA+TGG + tig0029236:2497-2516 Msa1441200:three_prime_UTR 10.0%
!!! ACTTTTTTGTTAAATATTTA+AGG + tig0029236:1507-1526 Msa1441200:intron 10.0%
!! GAAAACATATATATATATTA+TGG + tig0029236:2497-2516 Msa1441200:three_prime_UTR 10.0%
!!! CATTATCATTTTACAAAAAA+TGG + tig0029236:522-541 Msa1441200:exon 15.0%
!! CTATGTTAATAAAAAAGTTA+AGG - tig0029236:922-941 None:intergenic 15.0%
!! AAATGATACTTGTAATAAAA+CGG + tig0029236:996-1015 Msa1441200:intron 15.0%
!!! ACTAGTATTTGTTAATAATA+AGG + tig0029236:1580-1599 Msa1441200:intron 15.0%
!!! AAATGTTTTCACAATTTTAT+TGG + tig0029236:1788-1807 Msa1441200:intron 15.0%
!!! CATTATCATTTTACAAAAAA+TGG + tig0029236:522-541 Msa1441200:exon 15.0%
!! CTATGTTAATAAAAAAGTTA+AGG - tig0029236:922-941 None:intergenic 15.0%
!! AAATGATACTTGTAATAAAA+CGG + tig0029236:996-1015 Msa1441200:intron 15.0%
!!! ACTAGTATTTGTTAATAATA+AGG + tig0029236:1580-1599 Msa1441200:intron 15.0%
!!! AAATGTTTTCACAATTTTAT+TGG + tig0029236:1788-1807 Msa1441200:intron 15.0%
!!! TGTAAAATGATAATGAAGAT+GGG - tig0029236:517-536 None:intergenic 20.0%
!!! TTGTAAAATGATAATGAAGA+TGG - tig0029236:518-537 None:intergenic 20.0%
!! CATTGGATGATATAATTATA+TGG - tig0029236:627-646 None:intergenic 20.0%
!! TATGTAATCATTTGAATTTG+TGG + tig0029236:1103-1122 Msa1441200:intron 20.0%
!!! ATATTGCTCAACTATTTTTT+TGG + tig0029236:1468-1487 Msa1441200:intron 20.0%
!!! TTCAACATTTGTATTGTTTT+CGG + tig0029236:1679-1698 Msa1441200:intron 20.0%
!!! TTTTCACAATTTTATTGGTT+TGG + tig0029236:1793-1812 Msa1441200:intron 20.0%
!!! TTTTATGAAGAGAAATATTC+AGG - tig0029236:2373-2392 None:intergenic 20.0%
!!! TGTAAAATGATAATGAAGAT+GGG - tig0029236:517-536 None:intergenic 20.0%
!!! TTGTAAAATGATAATGAAGA+TGG - tig0029236:518-537 None:intergenic 20.0%
!! CATTGGATGATATAATTATA+TGG - tig0029236:627-646 None:intergenic 20.0%
!! TATGTAATCATTTGAATTTG+TGG + tig0029236:1103-1122 Msa1441200:intron 20.0%
!!! ATATTGCTCAACTATTTTTT+TGG + tig0029236:1468-1487 Msa1441200:intron 20.0%
!!! TTCAACATTTGTATTGTTTT+CGG + tig0029236:1679-1698 Msa1441200:intron 20.0%
!!! TTTTCACAATTTTATTGGTT+TGG + tig0029236:1793-1812 Msa1441200:intron 20.0%
!!! TTTTATGAAGAGAAATATTC+AGG - tig0029236:2373-2392 None:intergenic 20.0%
! ATAACCAATGAATTAATCCA+AGG + tig0029236:574-593 Msa1441200:CDS 25.0%
! TTTGTCAATCAAGAATTCAT+TGG - tig0029236:653-672 None:intergenic 25.0%
!!! AAGCGTTTTGAATTTGATAT+AGG + tig0029236:1363-1382 Msa1441200:intron 25.0%
!!! CAATATTGATTTGGTTAACA+TGG - tig0029236:1454-1473 None:intergenic 25.0%
!! ATAGTTGAGCAATATTGATT+TGG - tig0029236:1463-1482 None:intergenic 25.0%
! ATCTTGAGTAATGAAATAGA+AGG - tig0029236:1556-1575 None:intergenic 25.0%
! TAAGTTACCTCAATTATTGT+TGG - tig0029236:1902-1921 None:intergenic 25.0%
!! TCATTTTCTGATTCAATTGA+TGG - tig0029236:2151-2170 None:intergenic 25.0%
! ATCAGAAAATGAGATAATGA+TGG + tig0029236:2159-2178 Msa1441200:CDS 25.0%
!!! ATGATGGAATCAAACTTTTT+TGG + tig0029236:2175-2194 Msa1441200:CDS 25.0%
! ATAACCAATGAATTAATCCA+AGG + tig0029236:574-593 Msa1441200:CDS 25.0%
! TTTGTCAATCAAGAATTCAT+TGG - tig0029236:653-672 None:intergenic 25.0%
!!! AAGCGTTTTGAATTTGATAT+AGG + tig0029236:1363-1382 Msa1441200:intron 25.0%
!!! CAATATTGATTTGGTTAACA+TGG - tig0029236:1454-1473 None:intergenic 25.0%
!! ATAGTTGAGCAATATTGATT+TGG - tig0029236:1463-1482 None:intergenic 25.0%
! ATCTTGAGTAATGAAATAGA+AGG - tig0029236:1556-1575 None:intergenic 25.0%
! TAAGTTACCTCAATTATTGT+TGG - tig0029236:1902-1921 None:intergenic 25.0%
!! TCATTTTCTGATTCAATTGA+TGG - tig0029236:2151-2170 None:intergenic 25.0%
! ATCAGAAAATGAGATAATGA+TGG + tig0029236:2159-2178 Msa1441200:CDS 25.0%
!!! ATGATGGAATCAAACTTTTT+TGG + tig0029236:2175-2194 Msa1441200:CDS 25.0%
CTTTCCTTGGATTAATTCAT+TGG - tig0029236:581-600 None:intergenic 30.0%
CAATGAATTAATCCAAGGAA+AGG + tig0029236:579-598 Msa1441200:CDS 30.0%
!! CAAGAATTCATTGGTTTCAT+TGG - tig0029236:644-663 None:intergenic 30.0%
! ATCCTTCATTTTACCATCAA+TGG - tig0029236:737-756 None:intergenic 30.0%
GAATATAGCTGGAGAAAATA+TGG + tig0029236:1207-1226 Msa1441200:CDS 30.0%
TATGGTCAAAAGGATATTCT+TGG + tig0029236:1225-1244 Msa1441200:CDS 30.0%
! AGAAGACAAAGTGCTTATTA+AGG + tig0029236:1629-1648 Msa1441200:intron 30.0%
TGAAGATCCAACAATAATTG+AGG + tig0029236:1892-1911 Msa1441200:CDS 30.0%
ATAATTGAGGTAACTTACAG+AGG + tig0029236:1905-1924 Msa1441200:CDS 30.0%
! TCAAGCTAAGCCTTTAAAAA+GGG + tig0029236:1949-1968 Msa1441200:CDS 30.0%
TCCCTCAAAGTTAAAGATAA+AGG + tig0029236:1976-1995 Msa1441200:CDS 30.0%
! CCCTTTATCTTTAACTTTGA+GGG - tig0029236:1980-1999 None:intergenic 30.0%
CCCTCAAAGTTAAAGATAAA+GGG + tig0029236:1977-1996 Msa1441200:CDS 30.0%
GGTTTGTCAGAATATCAATT+AGG + tig0029236:2196-2215 Msa1441200:CDS 30.0%
GAATATCAATTAGGCTACAA+TGG + tig0029236:2205-2224 Msa1441200:CDS 30.0%
!! TACAATGGATTATGCCAAAA+TGG + tig0029236:2220-2239 Msa1441200:CDS 30.0%
AAGATATCCAAATCAAGGAT+TGG - tig0029236:2307-2326 None:intergenic 30.0%
!! AATATTCAGGAGTATTGAGA+GGG - tig0029236:2360-2379 None:intergenic 30.0%
!! AAATATTCAGGAGTATTGAG+AGG - tig0029236:2361-2380 None:intergenic 30.0%
TAAACAACTAGGTGAAAGTT+GGG - tig0029236:2398-2417 None:intergenic 30.0%
AGTACTTTGTAGATGATACA+AGG + tig0029236:2463-2482 Msa1441200:three_prime_UTR 30.0%
GTACTTTGTAGATGATACAA+GGG + tig0029236:2464-2483 Msa1441200:three_prime_UTR 30.0%
CTTTCCTTGGATTAATTCAT+TGG - tig0029236:581-600 None:intergenic 30.0%
CAATGAATTAATCCAAGGAA+AGG + tig0029236:579-598 Msa1441200:CDS 30.0%
!! CAAGAATTCATTGGTTTCAT+TGG - tig0029236:644-663 None:intergenic 30.0%
! ATCCTTCATTTTACCATCAA+TGG - tig0029236:737-756 None:intergenic 30.0%
GAATATAGCTGGAGAAAATA+TGG + tig0029236:1207-1226 Msa1441200:CDS 30.0%
TATGGTCAAAAGGATATTCT+TGG + tig0029236:1225-1244 Msa1441200:CDS 30.0%
! AGAAGACAAAGTGCTTATTA+AGG + tig0029236:1629-1648 Msa1441200:intron 30.0%
TGAAGATCCAACAATAATTG+AGG + tig0029236:1892-1911 Msa1441200:CDS 30.0%
ATAATTGAGGTAACTTACAG+AGG + tig0029236:1905-1924 Msa1441200:CDS 30.0%
! TCAAGCTAAGCCTTTAAAAA+GGG + tig0029236:1949-1968 Msa1441200:CDS 30.0%
TCCCTCAAAGTTAAAGATAA+AGG + tig0029236:1976-1995 Msa1441200:CDS 30.0%
! CCCTTTATCTTTAACTTTGA+GGG - tig0029236:1980-1999 None:intergenic 30.0%
CCCTCAAAGTTAAAGATAAA+GGG + tig0029236:1977-1996 Msa1441200:CDS 30.0%
GGTTTGTCAGAATATCAATT+AGG + tig0029236:2196-2215 Msa1441200:CDS 30.0%
GAATATCAATTAGGCTACAA+TGG + tig0029236:2205-2224 Msa1441200:CDS 30.0%
!! TACAATGGATTATGCCAAAA+TGG + tig0029236:2220-2239 Msa1441200:CDS 30.0%
AAGATATCCAAATCAAGGAT+TGG - tig0029236:2307-2326 None:intergenic 30.0%
!! AATATTCAGGAGTATTGAGA+GGG - tig0029236:2360-2379 None:intergenic 30.0%
!! AAATATTCAGGAGTATTGAG+AGG - tig0029236:2361-2380 None:intergenic 30.0%
TAAACAACTAGGTGAAAGTT+GGG - tig0029236:2398-2417 None:intergenic 30.0%
AGTACTTTGTAGATGATACA+AGG + tig0029236:2463-2482 Msa1441200:three_prime_UTR 30.0%
GTACTTTGTAGATGATACAA+GGG + tig0029236:2464-2483 Msa1441200:three_prime_UTR 30.0%
GAGTGTGAAATAATAGACAG+AGG - tig0029236:471-490 None:intergenic 35.0%
TCAACATAGTAAGTGCTTTC+TGG - tig0029236:690-709 None:intergenic 35.0%
CTTACTATGTTGAATGTGAG+AGG + tig0029236:697-716 Msa1441200:CDS 35.0%
! GACCATTGATGGTAAAATGA+AGG + tig0029236:732-751 Msa1441200:CDS 35.0%
!! TCTATGATGACCTCACTTTT+GGG - tig0029236:787-806 None:intergenic 35.0%
!!! TTTTCTTGAAGAGAGCATTG+TGG - tig0029236:822-841 None:intergenic 35.0%
ACAATGCTCTCTTCAAGAAA+AGG + tig0029236:821-840 Msa1441200:CDS 35.0%
TTCATGTGTGTGAATTGTCA+AGG + tig0029236:1052-1071 Msa1441200:intron 35.0%
ACTGAAATACGTTCAAGCTA+GGG - tig0029236:1084-1103 None:intergenic 35.0%
TACTGAAATACGTTCAAGCT+AGG - tig0029236:1085-1104 None:intergenic 35.0%
TTCACTTGTTCCTTCCATTT+AGG - tig0029236:1144-1163 None:intergenic 35.0%
ACAAACACAGGATTATCTGA+AGG + tig0029236:1171-1190 Msa1441200:CDS 35.0%
CAAACACAGGATTATCTGAA+GGG + tig0029236:1172-1191 Msa1441200:CDS 35.0%
CTTTGGATGATGAATATAGC+TGG + tig0029236:1196-1215 Msa1441200:CDS 35.0%
CTGGAGAAAATATGGTCAAA+AGG + tig0029236:1215-1234 Msa1441200:CDS 35.0%
! TTCTTGGAGCTAAGTTTTCA+AGG + tig0029236:1241-1260 Msa1441200:CDS 35.0%
ATTAAGCATCTTAGTGTCAC+AGG + tig0029236:1400-1419 Msa1441200:intron 35.0%
GGTTAACATGGCTAAAAACA+GGG - tig0029236:1442-1461 None:intergenic 35.0%
TGGTTAACATGGCTAAAAAC+AGG - tig0029236:1443-1462 None:intergenic 35.0%
!! TTTATTGGTTTGGATTGCAG+AGG + tig0029236:1803-1822 Msa1441200:intron 35.0%
TACAGATGCACACATAGAAA+TGG + tig0029236:1830-1849 Msa1441200:CDS 35.0%
!! CTTTTTAAAGGCTTAGCTTG+AGG - tig0029236:1950-1969 None:intergenic 35.0%
! CTCAAGCTAAGCCTTTAAAA+AGG + tig0029236:1948-1967 Msa1441200:CDS 35.0%
! GAGGGAAATTCCCTTTTTAA+AGG - tig0029236:1962-1981 None:intergenic 35.0%
! GCCCTTTATCTTTAACTTTG+AGG - tig0029236:1981-2000 None:intergenic 35.0%
TTTAACATCAAGTTCTGCCT+TGG - tig0029236:2071-2090 None:intergenic 35.0%
TGACTTAGAAGAAACCAAAG+AGG + tig0029236:2096-2115 Msa1441200:CDS 35.0%
GACTTAGAAGAAACCAAAGA+GGG + tig0029236:2097-2116 Msa1441200:CDS 35.0%
TCTGATTCAATTGATGGAGA+AGG - tig0029236:2145-2164 None:intergenic 35.0%
!!! ATTCTGAAGTTGGTCCATTT+TGG - tig0029236:2237-2256 None:intergenic 35.0%
!! GTGATATCAGATTCTGAAGT+TGG - tig0029236:2247-2266 None:intergenic 35.0%
! CAAATCAAGGATTGGTGAAT+TGG - tig0029236:2299-2318 None:intergenic 35.0%
CAATTCACCAATCCTTGATT+TGG + tig0029236:2297-2316 Msa1441200:CDS 35.0%
GAAGCAAGATATCCAAATCA+AGG - tig0029236:2312-2331 None:intergenic 35.0%
TTGGATATCTTGCTTCAAAG+AGG + tig0029236:2316-2335 Msa1441200:CDS 35.0%
TGGATATCTTGCTTCAAAGA+GGG + tig0029236:2317-2336 Msa1441200:CDS 35.0%
CTAAACAACTAGGTGAAAGT+TGG - tig0029236:2399-2418 None:intergenic 35.0%
TTCTTGCTCTCTAAACAACT+AGG - tig0029236:2409-2428 None:intergenic 35.0%
GAGTGTGAAATAATAGACAG+AGG - tig0029236:471-490 None:intergenic 35.0%
TCAACATAGTAAGTGCTTTC+TGG - tig0029236:690-709 None:intergenic 35.0%
CTTACTATGTTGAATGTGAG+AGG + tig0029236:697-716 Msa1441200:CDS 35.0%
! GACCATTGATGGTAAAATGA+AGG + tig0029236:732-751 Msa1441200:CDS 35.0%
!! TCTATGATGACCTCACTTTT+GGG - tig0029236:787-806 None:intergenic 35.0%
!!! TTTTCTTGAAGAGAGCATTG+TGG - tig0029236:822-841 None:intergenic 35.0%
ACAATGCTCTCTTCAAGAAA+AGG + tig0029236:821-840 Msa1441200:CDS 35.0%
TTCATGTGTGTGAATTGTCA+AGG + tig0029236:1052-1071 Msa1441200:intron 35.0%
ACTGAAATACGTTCAAGCTA+GGG - tig0029236:1084-1103 None:intergenic 35.0%
TACTGAAATACGTTCAAGCT+AGG - tig0029236:1085-1104 None:intergenic 35.0%
TTCACTTGTTCCTTCCATTT+AGG - tig0029236:1144-1163 None:intergenic 35.0%
ACAAACACAGGATTATCTGA+AGG + tig0029236:1171-1190 Msa1441200:CDS 35.0%
CAAACACAGGATTATCTGAA+GGG + tig0029236:1172-1191 Msa1441200:CDS 35.0%
CTTTGGATGATGAATATAGC+TGG + tig0029236:1196-1215 Msa1441200:CDS 35.0%
CTGGAGAAAATATGGTCAAA+AGG + tig0029236:1215-1234 Msa1441200:CDS 35.0%
! TTCTTGGAGCTAAGTTTTCA+AGG + tig0029236:1241-1260 Msa1441200:CDS 35.0%
ATTAAGCATCTTAGTGTCAC+AGG + tig0029236:1400-1419 Msa1441200:intron 35.0%
GGTTAACATGGCTAAAAACA+GGG - tig0029236:1442-1461 None:intergenic 35.0%
TGGTTAACATGGCTAAAAAC+AGG - tig0029236:1443-1462 None:intergenic 35.0%
!! TTTATTGGTTTGGATTGCAG+AGG + tig0029236:1803-1822 Msa1441200:intron 35.0%
TACAGATGCACACATAGAAA+TGG + tig0029236:1830-1849 Msa1441200:CDS 35.0%
!! CTTTTTAAAGGCTTAGCTTG+AGG - tig0029236:1950-1969 None:intergenic 35.0%
! CTCAAGCTAAGCCTTTAAAA+AGG + tig0029236:1948-1967 Msa1441200:CDS 35.0%
! GAGGGAAATTCCCTTTTTAA+AGG - tig0029236:1962-1981 None:intergenic 35.0%
! GCCCTTTATCTTTAACTTTG+AGG - tig0029236:1981-2000 None:intergenic 35.0%
TTTAACATCAAGTTCTGCCT+TGG - tig0029236:2071-2090 None:intergenic 35.0%
TGACTTAGAAGAAACCAAAG+AGG + tig0029236:2096-2115 Msa1441200:CDS 35.0%
GACTTAGAAGAAACCAAAGA+GGG + tig0029236:2097-2116 Msa1441200:CDS 35.0%
TCTGATTCAATTGATGGAGA+AGG - tig0029236:2145-2164 None:intergenic 35.0%
!!! ATTCTGAAGTTGGTCCATTT+TGG - tig0029236:2237-2256 None:intergenic 35.0%
!! GTGATATCAGATTCTGAAGT+TGG - tig0029236:2247-2266 None:intergenic 35.0%
! CAAATCAAGGATTGGTGAAT+TGG - tig0029236:2299-2318 None:intergenic 35.0%
CAATTCACCAATCCTTGATT+TGG + tig0029236:2297-2316 Msa1441200:CDS 35.0%
GAAGCAAGATATCCAAATCA+AGG - tig0029236:2312-2331 None:intergenic 35.0%
TTGGATATCTTGCTTCAAAG+AGG + tig0029236:2316-2335 Msa1441200:CDS 35.0%
TGGATATCTTGCTTCAAAGA+GGG + tig0029236:2317-2336 Msa1441200:CDS 35.0%
CTAAACAACTAGGTGAAAGT+TGG - tig0029236:2399-2418 None:intergenic 35.0%
TTCTTGCTCTCTAAACAACT+AGG - tig0029236:2409-2428 None:intergenic 35.0%
TTAGTGAAAGGTGAGACGAA+GGG - tig0029236:442-461 None:intergenic 40.0%
GCACTTAAGTGGAGTAATGA+AGG - tig0029236:495-514 None:intergenic 40.0%
AATGAAGATGGGCACTTAAG+TGG - tig0029236:506-525 None:intergenic 40.0%
! CATAGTAAGTGCTTTCTGGT+AGG - tig0029236:686-705 None:intergenic 40.0%
ACTATGTTGAATGTGAGAGG+AGG + tig0029236:700-719 Msa1441200:CDS 40.0%
GGACTCTCGTTTGTAAAAGA+AGG - tig0029236:766-785 None:intergenic 40.0%
! GTCTATGATGACCTCACTTT+TGG - tig0029236:788-807 None:intergenic 40.0%
TGTGTGAATTGTCAAGGTCA+AGG + tig0029236:1058-1077 Msa1441200:intron 40.0%
! AAAGAGCATGCCTAAATGGA+AGG + tig0029236:1131-1150 Msa1441200:CDS 40.0%
GTGAAGATTTGCACAAACAC+AGG + tig0029236:1159-1178 Msa1441200:CDS 40.0%
AGGATTATCTGAAGGGTCTT+TGG + tig0029236:1179-1198 Msa1441200:CDS 40.0%
TGCACACATAGAAATGGACA+AGG + tig0029236:1836-1855 Msa1441200:CDS 40.0%
GCACACATAGAAATGGACAA+GGG + tig0029236:1837-1856 Msa1441200:CDS 40.0%
! TTTGAACCTGCTTTGTTGCT+AGG - tig0029236:1865-1884 None:intergenic 40.0%
TAGCAACAAAGCAGGTTCAA+AGG + tig0029236:1864-1883 Msa1441200:CDS 40.0%
!! AGAGACTAGTTTCACTTCCA+AGG + tig0029236:2051-2070 Msa1441200:CDS 40.0%
GAGAAGGAAAACAAAACCGA+GGG - tig0029236:2129-2148 None:intergenic 40.0%
GGATATCTTGCTTCAAAGAG+GGG + tig0029236:2318-2337 Msa1441200:CDS 40.0%
TTAGTGAAAGGTGAGACGAA+GGG - tig0029236:442-461 None:intergenic 40.0%
GCACTTAAGTGGAGTAATGA+AGG - tig0029236:495-514 None:intergenic 40.0%
AATGAAGATGGGCACTTAAG+TGG - tig0029236:506-525 None:intergenic 40.0%
! CATAGTAAGTGCTTTCTGGT+AGG - tig0029236:686-705 None:intergenic 40.0%
ACTATGTTGAATGTGAGAGG+AGG + tig0029236:700-719 Msa1441200:CDS 40.0%
GGACTCTCGTTTGTAAAAGA+AGG - tig0029236:766-785 None:intergenic 40.0%
! GTCTATGATGACCTCACTTT+TGG - tig0029236:788-807 None:intergenic 40.0%
TGTGTGAATTGTCAAGGTCA+AGG + tig0029236:1058-1077 Msa1441200:intron 40.0%
! AAAGAGCATGCCTAAATGGA+AGG + tig0029236:1131-1150 Msa1441200:CDS 40.0%
GTGAAGATTTGCACAAACAC+AGG + tig0029236:1159-1178 Msa1441200:CDS 40.0%
AGGATTATCTGAAGGGTCTT+TGG + tig0029236:1179-1198 Msa1441200:CDS 40.0%
TGCACACATAGAAATGGACA+AGG + tig0029236:1836-1855 Msa1441200:CDS 40.0%
GCACACATAGAAATGGACAA+GGG + tig0029236:1837-1856 Msa1441200:CDS 40.0%
! TTTGAACCTGCTTTGTTGCT+AGG - tig0029236:1865-1884 None:intergenic 40.0%
TAGCAACAAAGCAGGTTCAA+AGG + tig0029236:1864-1883 Msa1441200:CDS 40.0%
!! AGAGACTAGTTTCACTTCCA+AGG + tig0029236:2051-2070 Msa1441200:CDS 40.0%
GAGAAGGAAAACAAAACCGA+GGG - tig0029236:2129-2148 None:intergenic 40.0%
GGATATCTTGCTTCAAAGAG+GGG + tig0029236:2318-2337 Msa1441200:CDS 40.0%
TAGTGAAAGGTGAGACGAAG+GGG - tig0029236:441-460 None:intergenic 45.0%
CTTAGTGAAAGGTGAGACGA+AGG - tig0029236:443-462 None:intergenic 45.0%
CAGAGGAGTTGCTTAGTGAA+AGG - tig0029236:454-473 None:intergenic 45.0%
GCTTTGCTAACTCCTTTCCT+TGG - tig0029236:594-613 None:intergenic 45.0%
GGAGAGACTAAGACCATTGA+TGG + tig0029236:721-740 Msa1441200:CDS 45.0%
AAACGAGAGTCCCAAAAGTG+AGG + tig0029236:774-793 Msa1441200:CDS 45.0%
AAGTGAGGTCATCATAGACC+AGG + tig0029236:789-808 Msa1441200:CDS 45.0%
! GAGCATTGTGGTTAAACTCC+TGG - tig0029236:810-829 None:intergenic 45.0%
! GCAGAAAGAGCATGCCTAAA+TGG + tig0029236:1127-1146 Msa1441200:intron 45.0%
!!! CCAAAGAGGGTATTTTCCCT+CGG + tig0029236:2110-2129 Msa1441200:CDS 45.0%
GGAGAAGGAAAACAAAACCG+AGG - tig0029236:2130-2149 None:intergenic 45.0%
! GGTGAATTGGTGACTGAAGT+TGG - tig0029236:2286-2305 None:intergenic 45.0%
TAGTGAAAGGTGAGACGAAG+GGG - tig0029236:441-460 None:intergenic 45.0%
CTTAGTGAAAGGTGAGACGA+AGG - tig0029236:443-462 None:intergenic 45.0%
CAGAGGAGTTGCTTAGTGAA+AGG - tig0029236:454-473 None:intergenic 45.0%
GCTTTGCTAACTCCTTTCCT+TGG - tig0029236:594-613 None:intergenic 45.0%
GGAGAGACTAAGACCATTGA+TGG + tig0029236:721-740 Msa1441200:CDS 45.0%
AAACGAGAGTCCCAAAAGTG+AGG + tig0029236:774-793 Msa1441200:CDS 45.0%
AAGTGAGGTCATCATAGACC+AGG + tig0029236:789-808 Msa1441200:CDS 45.0%
! GAGCATTGTGGTTAAACTCC+TGG - tig0029236:810-829 None:intergenic 45.0%
! GCAGAAAGAGCATGCCTAAA+TGG + tig0029236:1127-1146 Msa1441200:intron 45.0%
!!! CCAAAGAGGGTATTTTCCCT+CGG + tig0029236:2110-2129 Msa1441200:CDS 45.0%
GGAGAAGGAAAACAAAACCG+AGG - tig0029236:2130-2149 None:intergenic 45.0%
! GGTGAATTGGTGACTGAAGT+TGG - tig0029236:2286-2305 None:intergenic 45.0%
!!! ATTAATAATATTTTTTTTAG+TGG + tig0029236:1325-1344 Msa1441200:intron 5.0%
!!! ATTAATAATATTTTTTTTAG+TGG + tig0029236:1325-1344 Msa1441200:intron 5.0%
CCGAGGGAAAATACCCTCTT+TGG - tig0029236:2113-2132 None:intergenic 50.0%
CCGAGGGAAAATACCCTCTT+TGG - tig0029236:2113-2132 None:intergenic 50.0%
! AGGGTGCCTAGCAACAAAGC+AGG + tig0029236:1856-1875 Msa1441200:CDS 55.0%
! AGGGTGCCTAGCAACAAAGC+AGG + tig0029236:1856-1875 Msa1441200:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0029236 gene 437 2524 437 ID=Msa1441200;Name=Msa1441200
tig0029236 mRNA 437 2524 437 ID=Msa1441200-mRNA-1;Parent=Msa1441200;Name=Msa1441200-mRNA-1;_AED=0.16;_eAED=0.16;_QI=104|1|1|1|1|1|3|134|333
tig0029236 exon 437 842 437 ID=Msa1441200-mRNA-1:exon:12700;Parent=Msa1441200-mRNA-1
tig0029236 exon 1131 1262 1131 ID=Msa1441200-mRNA-1:exon:12701;Parent=Msa1441200-mRNA-1
tig0029236 exon 1823 2524 1823 ID=Msa1441200-mRNA-1:exon:12702;Parent=Msa1441200-mRNA-1
tig0029236 five_prime_UTR 437 540 437 ID=Msa1441200-mRNA-1:five_prime_utr;Parent=Msa1441200-mRNA-1
tig0029236 CDS 541 842 541 ID=Msa1441200-mRNA-1:cds;Parent=Msa1441200-mRNA-1
tig0029236 CDS 1131 1262 1131 ID=Msa1441200-mRNA-1:cds;Parent=Msa1441200-mRNA-1
tig0029236 CDS 1823 2390 1823 ID=Msa1441200-mRNA-1:cds;Parent=Msa1441200-mRNA-1
tig0029236 three_prime_UTR 2391 2524 2391 ID=Msa1441200-mRNA-1:three_prime_utr;Parent=Msa1441200-mRNA-1
Gene Sequence

>Msa1441200

ATGGAAGAGACTACAAAGAGAAAACGTGTTAGTATAACCAATGAATTAATCCAAGGAAAGGAGTTAGCAAAGCAGCTAAGTAACCATATAATTATATCATCCAATGAAACCAATGAATTCTTGATTGACAAAATAATTTCAACCTACCAGAAAGCACTTACTATGTTGAATGTGAGAGGAGGAGAGACTAAGACCATTGATGGTAAAATGAAGGATTCTCATCCTTCTTTTACAAACGAGAGTCCCAAAAGTGAGGTCATCATAGACCAGGAGTTTAACCACAATGCTCTCTTCAAGAAAAGAAAGAGCATGCCTAAATGGAAGGAACAAGTGAAGATTTGCACAAACACAGGATTATCTGAAGGGTCTTTGGATGATGAATATAGCTGGAGAAAATATGGTCAAAAGGATATTCTTGGAGCTAAGTTTTCAAGAGGATATTACAGATGCACACATAGAAATGGACAAGGGTGCCTAGCAACAAAGCAGGTTCAAAGGTCAGATGAAGATCCAACAATAATTGAGGTAACTTACAGAGGAAGACACACATGCACTCATCCTCAAGCTAAGCCTTTAAAAAGGGAATTTCCCTCAAAGTTAAAGATAAAGGGCTTAGAGAAAAATAAACTTCACAATGATAAAAAGAATCAACTACAAACTCAAGAGACTAGTTTCACTTCCAAGGCAGAACTTGATGTTAAAAGAAATGACTTAGAAGAAACCAAAGAGGGTATTTTCCCTCGGTTTTGTTTTCCTTCTCCATCAATTGAATCAGAAAATGAGATAATGATGGAATCAAACTTTTTTGGTTTGTCAGAATATCAATTAGGCTACAATGGATTATGCCAAAATGGACCAACTTCAGAATCTGATATCACTGATACAGTTTCAGCTCCAACTTCAGTCACCAATTCACCAATCCTTGATTTGGATATCTTGCTTCAAAGAGGGGATTTTGACACTGATTTCCCTCTCAATACTCCTGAATATTTCTCTTCATAA
Protein sequence

>Msa1441200

MEETTKRKRVSITNELIQGKELAKQLSNHIIISSNETNEFLIDKIISTYQKALTMLNVRGGETKTIDGKMKDSHPSFTNESPKSEVIIDQEFNHNALFKKRKSMPKWKEQVKICTNTGLSEGSLDDEYSWRKYGQKDILGAKFSRGYYRCTHRNGQGCLATKQVQRSDEDPTIIEVTYRGRHTCTHPQAKPLKREFPSKLKIKGLEKNKLHNDKKNQLQTQETSFTSKAELDVKRNDLEETKEGIFPRFCFPSPSIESENEIMMESNFFGLSEYQLGYNGLCQNGPTSESDITDTVSAPTSVTNSPILDLDILLQRGDFDTDFPLNTPEYFSS*