AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0465400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465400 MtrunA17_Chr3g0117601 98.810 336 4 0 1 336 1 336 0.0 690
Msa0465400 MtrunA17_Chr3g0127201 34.615 312 142 15 43 324 8 287 7.81e-39 139
Msa0465400 MtrunA17_Chr4g0030051 55.039 129 42 3 39 159 21 141 4.24e-36 132
Msa0465400 MtrunA17_Chr2g0326001 54.331 127 45 4 38 155 19 141 9.38e-36 131
Msa0465400 MtrunA17_Chr8g0346551 52.800 125 44 4 45 158 10 130 1.52e-35 130
Msa0465400 MtrunA17_Chr4g0031411 58.491 106 37 3 44 142 55 160 2.30e-34 128
Msa0465400 MtrunA17_Chr2g0328021 72.603 73 18 1 50 122 51 121 6.87e-34 126
Msa0465400 MtrunA17_Chr1g0188851 53.125 128 46 5 41 163 25 143 1.22e-33 125
Msa0465400 MtrunA17_Chr8g0374251 66.197 71 24 0 61 131 68 138 2.90e-31 120
Msa0465400 MtrunA17_Chr4g0010151 69.333 75 20 2 44 115 62 136 9.85e-31 119
Msa0465400 MtrunA17_Chr7g0237921 60.870 92 29 3 27 115 43 130 3.89e-30 117
Msa0465400 MtrunA17_Chr7g0223311 56.122 98 27 3 34 115 34 131 8.09e-30 117
Msa0465400 MtrunA17_Chr8g0367161 67.164 67 22 0 50 116 21 87 8.37e-30 116
Msa0465400 MtrunA17_Chr3g0126201 71.875 64 18 0 52 115 42 105 8.42e-30 116
Msa0465400 MtrunA17_Chr2g0282441 77.049 61 14 0 52 112 16 76 1.33e-29 115
Msa0465400 MtrunA17_Chr4g0047001 81.818 55 10 0 62 116 56 110 1.81e-29 116
Msa0465400 MtrunA17_Chr8g0374111 55.319 94 35 2 52 141 16 106 1.11e-28 110
Msa0465400 MtrunA17_Chr5g0411951 78.571 56 12 0 56 111 38 93 1.22e-28 113
Msa0465400 MtrunA17_Chr1g0177251 71.212 66 19 0 59 124 10 75 2.35e-28 111
Msa0465400 MtrunA17_Chr8g0341671 74.603 63 16 0 56 118 15 77 6.54e-28 108
Msa0465400 MtrunA17_Chr4g0061761 84.314 51 8 0 61 111 40 90 6.13e-27 108
Msa0465400 MtrunA17_Chr2g0282511 84.000 50 8 0 60 109 44 93 4.02e-26 105
Msa0465400 MtrunA17_Chr2g0308011 82.353 51 9 0 59 109 35 85 6.36e-26 102
Msa0465400 MtrunA17_Chr3g0092111 66.667 69 22 1 50 118 126 193 1.08e-25 107
Msa0465400 MtrunA17_Chr2g0282051 47.458 118 42 5 1 116 1 100 2.04e-25 103
Msa0465400 MtrunA17_Chr4g0047761 76.786 56 12 1 61 116 72 126 6.42e-25 102
Msa0465400 MtrunA17_Chr7g0217581 43.697 119 59 2 25 136 190 307 3.45e-24 103
Msa0465400 MtrunA17_Chr4g0042481 60.870 69 26 1 50 118 112 179 4.43e-24 102
Msa0465400 MtrunA17_Chr6g0453321 44.545 110 54 1 30 132 98 207 5.64e-24 102
Msa0465400 MtrunA17_Chr7g0254161 42.342 111 58 2 20 130 66 170 1.04e-23 100
Msa0465400 MtrunA17_Chr6g0460721 42.478 113 57 4 7 119 43 147 2.41e-23 98.6
Msa0465400 MtrunA17_Chr8g0355261 53.333 75 34 1 41 115 99 172 4.83e-23 99.0
Msa0465400 MtrunA17_Chr6g0460731 55.714 70 30 1 50 119 86 154 7.19e-23 97.8
Msa0465400 MtrunA17_Chr5g0417571 41.600 125 55 3 12 118 71 195 2.81e-22 95.5
Msa0465400 MtrunA17_Chr2g0283811 66.667 54 18 0 61 114 47 100 3.48e-22 91.3
Msa0465400 MtrunA17_Chr5g0417601 63.793 58 21 0 57 114 136 193 1.43e-20 91.7
Msa0465400 MtrunA17_Chr5g0417561 45.161 93 47 1 26 114 80 172 3.19e-20 90.1
Msa0465400 MtrunA17_Chr5g0417551 68.519 54 17 0 61 114 127 180 6.85e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465400 AT5G62940.1 42.748 393 145 23 1 334 1 372 1.27e-55 186
Msa0465400 AT5G60200.1 66.292 89 27 3 33 121 30 115 2.49e-35 129
Msa0465400 AT1G51700.1 47.656 128 54 2 56 170 28 155 7.09e-33 121
Msa0465400 AT2G28510.1 56.364 110 35 2 63 160 50 158 5.21e-32 121
Msa0465400 AT3G45610.1 43.373 166 68 7 54 212 32 178 2.41e-31 118
Msa0465400 AT4G24060.1 50.000 122 46 2 50 156 42 163 2.72e-31 120
Msa0465400 AT5G02460.1 70.667 75 19 2 44 115 75 149 5.15e-31 121
Msa0465400 AT3G55370.1 65.000 80 25 2 43 119 55 134 7.19e-31 119
Msa0465400 AT3G55370.2 65.000 80 25 2 43 119 55 134 8.81e-31 119
Msa0465400 AT3G55370.3 65.000 80 25 2 43 119 100 179 1.30e-30 119
Msa0465400 AT2G37590.1 64.474 76 24 1 44 116 69 144 1.74e-30 118
Msa0465400 AT1G07640.1 69.444 72 19 1 47 115 4 75 6.32e-30 115
Msa0465400 AT5G60850.1 66.234 77 20 1 50 120 34 110 6.70e-30 116
Msa0465400 AT1G07640.2 69.444 72 19 1 47 115 60 131 1.09e-29 116
Msa0465400 AT1G07640.3 69.444 72 19 1 47 115 68 139 1.21e-29 116
Msa0465400 AT1G64620.1 52.672 131 47 3 45 164 33 159 1.76e-29 116
Msa0465400 AT3G61850.2 65.753 73 23 1 46 118 49 119 3.49e-29 114
Msa0465400 AT3G61850.3 65.753 73 23 1 46 118 49 119 3.49e-29 114
Msa0465400 AT5G65590.1 62.963 81 25 1 35 115 20 95 3.83e-29 114
Msa0465400 AT3G61850.1 65.753 73 23 1 46 118 61 131 3.89e-29 114
Msa0465400 AT3G61850.5 65.753 73 23 1 46 118 49 119 5.87e-29 114
Msa0465400 AT3G61850.4 65.753 73 23 1 46 118 61 131 6.09e-29 114
Msa0465400 AT3G52440.1 68.182 66 21 0 58 123 22 87 1.03e-28 111
Msa0465400 AT1G28310.1 82.143 56 10 0 61 116 27 82 1.39e-28 112
Msa0465400 AT3G52440.2 68.182 66 21 0 58 123 41 106 2.02e-28 111
Msa0465400 AT1G28310.2 82.143 56 10 0 61 116 51 106 2.16e-28 112
Msa0465400 AT1G21340.1 69.444 72 19 1 63 134 40 108 3.01e-28 110
Msa0465400 AT3G21270.1 54.717 106 42 3 61 164 29 130 4.88e-28 108
Msa0465400 AT4G21050.1 59.551 89 33 2 54 142 19 104 5.91e-28 108
Msa0465400 AT2G28810.2 65.152 66 22 1 47 112 64 128 5.95e-28 111
Msa0465400 AT2G28810.1 65.152 66 22 1 47 112 81 145 1.06e-27 111
Msa0465400 AT4G00940.1 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0465400 AT4G00940.3 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0465400 AT4G00940.2 53.398 103 31 2 63 151 70 169 8.91e-27 107
Msa0465400 AT2G46590.1 55.682 88 36 2 22 108 30 115 2.59e-26 107
Msa0465400 AT4G38000.1 60.256 78 30 1 41 117 21 98 2.62e-26 105
Msa0465400 AT2G46590.2 55.682 88 36 2 22 108 42 127 2.97e-26 107
Msa0465400 AT3G50410.1 75.439 57 14 0 61 117 30 86 7.29e-26 104
Msa0465400 AT5G66940.1 70.968 62 18 0 61 122 32 93 1.06e-25 103
Msa0465400 AT1G47655.1 73.684 57 13 1 55 109 21 77 5.92e-25 100
Msa0465400 AT3G47500.1 63.235 68 24 1 51 118 101 167 4.87e-24 102
Msa0465400 AT5G62430.1 46.087 115 48 3 50 164 44 144 6.02e-24 100
Msa0465400 AT5G39660.3 63.768 69 24 1 50 118 128 195 9.95e-24 101
Msa0465400 AT5G39660.1 63.768 69 24 1 50 118 128 195 9.95e-24 101
Msa0465400 AT5G39660.2 63.768 69 24 1 50 118 128 195 9.95e-24 101
Msa0465400 AT1G69570.1 64.516 62 21 1 53 114 125 185 3.91e-23 99.4
Msa0465400 AT1G29160.1 60.000 70 26 1 45 114 48 115 4.48e-23 94.7
Msa0465400 AT2G34140.1 47.253 91 36 1 24 114 33 111 1.46e-22 93.2
Msa0465400 AT4G21040.1 57.971 69 29 0 63 131 27 95 4.59e-22 93.6
Msa0465400 AT1G26790.1 53.333 75 35 0 58 132 108 182 8.63e-22 95.1
Msa0465400 AT4G21080.1 56.000 75 30 1 63 134 27 101 4.24e-21 91.3
Msa0465400 AT4G21030.1 55.556 63 25 1 50 112 13 72 6.51e-15 72.8

Find 116 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTGTTCTCCATGAAATT+AGG 0.146876 3_3:+65734041 None:intergenic
AGTAAGTTAGAAGGCATAAT+TGG 0.168612 3_3:-65733966 Msa0465400:CDS
TCTCACCTAAGTAACTTATT+TGG 0.188613 3_3:-65734086 Msa0465400:CDS
TAGCAATGGTGCTTATTTAA+TGG 0.193039 3_3:-65733784 Msa0465400:CDS
AAAGAAAGTTGAAGATCTTT+AGG 0.198842 3_3:+65734125 None:intergenic
CATTCAAGTGACAATAGTTT+AGG 0.231938 3_3:+65733684 None:intergenic
TGCCTTGGTGTGTTTCCTTT+TGG 0.256108 3_3:-65733311 Msa0465400:three_prime_UTR
ACTTGTTCTCCATGAAATTA+GGG 0.276978 3_3:+65734042 None:intergenic
GATATGATGAATGGACAAAA+TGG 0.284919 3_3:-65733864 Msa0465400:CDS
TTTGGAGCTAATGGAGCATT+AGG 0.302981 3_3:-65734068 Msa0465400:CDS
TGATCATATGAATATGAATA+TGG 0.304551 3_3:-65733904 Msa0465400:CDS
AGTAACTTATTTGGAGCTAA+TGG 0.308114 3_3:-65734077 Msa0465400:CDS
GTTCCTAAGTGTTCCTCCTT+TGG 0.313562 3_3:+65734268 None:intergenic
TTCTCTTCACGTCTGCAATA+TGG 0.315298 3_3:-65735006 Msa0465400:CDS
AAGAAAGTTGAAGATCTTTA+GGG 0.315430 3_3:+65734126 None:intergenic
ATTCAAGTGACAATAGTTTA+GGG 0.332848 3_3:+65733685 None:intergenic
ACACACCAAGGCAGTAGATT+TGG 0.347710 3_3:+65733321 None:intergenic
ATGAATATGGGTGTTGGGAT+TGG 0.368536 3_3:-65733891 Msa0465400:CDS
GTTGTTGTAGTAGCAGAATT+TGG 0.376869 3_3:+65734343 None:intergenic
CTTTCCATCATGAAGTCAAT+AGG 0.377139 3_3:+65733987 None:intergenic
TTTCTACAGCCTCCACCAAC+AGG 0.392353 3_3:+65734242 None:intergenic
AAAGGTCAGTCATTTGGATA+TGG 0.392934 3_3:-65733630 Msa0465400:CDS
GCAAGACTTGTAGAAGGTAT+TGG 0.393470 3_3:-65734292 Msa0465400:CDS
AAAGTGATTGATTAGGTCAT+TGG 0.395429 3_3:+65733517 None:intergenic
GCTGGAAAAGGTCAGTCATT+TGG 0.395618 3_3:-65733636 Msa0465400:CDS
ATTAGGAAACCCTAATTTCA+TGG 0.397565 3_3:-65734051 Msa0465400:CDS
CGACACGTCATGGAAGCTTT+AGG 0.404008 3_3:-65733258 Msa0465400:three_prime_UTR
AGTGACAATAGTTTAGGGTT+TGG 0.405871 3_3:+65733690 None:intergenic
GTTGTGTTGTGGTTGCTACA+TGG 0.420708 3_3:+65735244 None:intergenic
TTTGGTGGAATGTCATTTGA+TGG 0.425628 3_3:-65733816 Msa0465400:CDS
TCCTCATCATTAGCATCATA+TGG 0.425855 3_3:+65733738 None:intergenic
GTAAGTTAGAAGGCATAATT+GGG 0.426365 3_3:-65733965 Msa0465400:CDS
GCGTTTCTTTCTATAAATCA+AGG 0.427761 3_3:-65733410 Msa0465400:three_prime_UTR
TGTTAAGTGAGAAGAGATAG+AGG 0.437368 3_3:+65735186 None:intergenic
TATGAAGAAAGTGATTGATT+AGG 0.437988 3_3:+65733510 None:intergenic
TAGCTCCAAATAAGTTACTT+AGG 0.442973 3_3:+65734081 None:intergenic
AGGTGAGAGAATTGCACATC+AGG 0.445358 3_3:+65734101 None:intergenic
ATCTGCAGATCATTGGTTGC+AGG 0.446436 3_3:-65734979 Msa0465400:intron
ATGTAACATCGAGGAAGATA+TGG 0.449127 3_3:-65733219 Msa0465400:three_prime_UTR
ATATACATAAAGTCTTTGTA+TGG 0.454485 3_3:-65733472 Msa0465400:three_prime_UTR
TCTTAGCCTCCTCTCTATCA+TGG 0.458753 3_3:+65734415 None:intergenic
GATCAAGGTTGCTCTGATGC+TGG 0.462649 3_3:-65733654 Msa0465400:CDS
ATGATGGAAAGTAAGTTAGA+AGG 0.467778 3_3:-65733975 Msa0465400:CDS
TGGAATCATCTGCAGATCAT+TGG 0.469488 3_3:-65734986 Msa0465400:CDS
GAGCTTAGCCGTTGATCAAA+GGG 0.477519 3_3:+65733562 None:intergenic
AGTGGTATGATGAATGGTTA+TGG 0.480178 3_3:-65733600 Msa0465400:CDS
TTCACACTCGACCCATCTCT+TGG 0.480929 3_3:+65733360 None:intergenic
AATATGGGTGTTGGGATTGG+AGG 0.481246 3_3:-65733888 Msa0465400:CDS
GGTTGCTCTGATGCTGGAAA+AGG 0.482324 3_3:-65733648 Msa0465400:CDS
GGCACAATTCACGATGAGTC+AGG 0.484101 3_3:-65734494 Msa0465400:CDS
GATTCATCTTCACCAATGTC+TGG 0.489933 3_3:-65734467 Msa0465400:CDS
CATAAAGTCTTTGTATGGGA+GGG 0.490896 3_3:-65733467 Msa0465400:three_prime_UTR
CTTGATCACAACTCTGAGCT+TGG 0.491446 3_3:-65735047 Msa0465400:five_prime_UTR
GAGAACAAGTATAGCAATGT+TGG 0.493849 3_3:-65734029 Msa0465400:CDS
CTCCTCTCTATCATGGATGA+TGG 0.495201 3_3:+65734422 None:intergenic
ACTTCTGCAAGACTTGTAGA+AGG 0.495701 3_3:-65734298 Msa0465400:CDS
AGAGCTTAGCCGTTGATCAA+AGG 0.500555 3_3:+65733561 None:intergenic
CTAAACTATTGTCACTTGAA+TGG 0.500804 3_3:-65733683 Msa0465400:CDS
CTTGAATGGCAGCAAGATCA+AGG 0.502791 3_3:-65733669 Msa0465400:CDS
ATGAATATGAATATGGGTGT+TGG 0.503188 3_3:-65733897 Msa0465400:CDS
AGTCATTTGGATATGGATCA+TGG 0.505387 3_3:-65733623 Msa0465400:CDS
GTGACATGCTAACATGTTCA+AGG 0.508689 3_3:-65734445 Msa0465400:CDS
TCTTTGTGTGCGACACGTCA+TGG 0.513722 3_3:-65733268 Msa0465400:three_prime_UTR
TGAATATGAATATGGGTGTT+GGG 0.514370 3_3:-65733896 Msa0465400:CDS
ATCATGAAGTCAATAGGCCT+AGG 0.516098 3_3:+65733993 None:intergenic
ACATATTTATATAATCCAAA+AGG 0.528989 3_3:+65733296 None:intergenic
TTGTGATCAAGCAGTGTAGT+TGG 0.535204 3_3:+65735059 None:intergenic
CGTTTCTTTCTATAAATCAA+GGG 0.539763 3_3:-65733409 Msa0465400:three_prime_UTR
ATCCGAGAAGAAAATGAAAG+AGG 0.539774 3_3:+65735146 None:intergenic
TTGTGTTGTGGTTGCTACAT+GGG 0.541396 3_3:+65735245 None:intergenic
AGAAGAAAATGAAAGAGGAT+AGG 0.545528 3_3:+65735151 None:intergenic
CTACTGAATTAACCAAGAGA+TGG 0.548579 3_3:-65733372 Msa0465400:three_prime_UTR
CTTAGGAACATCCCTGTTGG+TGG 0.550577 3_3:-65734254 Msa0465400:CDS
CAAGTCTTGCAGAAGTACCT+TGG 0.558008 3_3:+65734305 None:intergenic
AGGAACATCCCTGTTGGTGG+AGG 0.558859 3_3:-65734251 Msa0465400:CDS
TATACATAAAGTCTTTGTAT+GGG 0.559157 3_3:-65733471 Msa0465400:three_prime_UTR
CATGTGTTTGTGTTGTGTTG+TGG 0.559484 3_3:+65735233 None:intergenic
AGAGTCCAAATCTACTGCCT+TGG 0.559695 3_3:-65733326 Msa0465400:three_prime_UTR
TACTGAATTAACCAAGAGAT+GGG 0.562851 3_3:-65733371 Msa0465400:three_prime_UTR
ACAACAAACCCTTTGATCAA+CGG 0.565654 3_3:-65733570 Msa0465400:CDS
ATATGATGAATGGACAAAAT+GGG 0.566744 3_3:-65733863 Msa0465400:CDS
ATTGGAGGAGATATGATGAA+TGG 0.570060 3_3:-65733873 Msa0465400:CDS
ACATAAAGTCTTTGTATGGG+AGG 0.575556 3_3:-65733468 Msa0465400:three_prime_UTR
ACCTATCCCTAAAATGTCCA+AGG 0.579764 3_3:-65734382 Msa0465400:CDS
GATCATATGAATATGAATAT+GGG 0.580380 3_3:-65733903 Msa0465400:CDS
TAGGCCTATTGACTTCATGA+TGG 0.581168 3_3:-65733991 Msa0465400:CDS
TCATGGAGTGGTATGATGAA+TGG 0.582721 3_3:-65733606 Msa0465400:CDS
TTGTGGTTGCTACATGGGAC+GGG 0.587904 3_3:+65735250 None:intergenic
TGTAGAAGGTATTGGACCAA+AGG 0.594254 3_3:-65734284 Msa0465400:CDS
AATTCACGATGAGTCAGGAA+TGG 0.596611 3_3:-65734489 Msa0465400:CDS
GTTATTGTCATTGCATTGCA+AGG 0.598961 3_3:+65735119 None:intergenic
GGACCAAAGGAGGAACACTT+AGG 0.599656 3_3:-65734271 Msa0465400:CDS
AGGAAGGTACATGATGTGGT+TGG 0.607867 3_3:+65734159 None:intergenic
GGTGGAATGTCATTTGATGG+AGG 0.611132 3_3:-65733813 Msa0465400:CDS
TCATGAAGTCAATAGGCCTA+GGG 0.612063 3_3:+65733994 None:intergenic
GGCCATCATCCATGATAGAG+AGG 0.614387 3_3:-65734424 Msa0465400:CDS
GATGGAGGAAACAATAGCAA+TGG 0.614470 3_3:-65733798 Msa0465400:CDS
GTTTCTTTCTATAAATCAAG+GGG 0.615214 3_3:-65733408 Msa0465400:three_prime_UTR
GGTGAGAGAATTGCACATCA+GGG 0.615522 3_3:+65734102 None:intergenic
GTTGTGGTTGCTACATGGGA+CGG 0.616180 3_3:+65735249 None:intergenic
TTGGCATGCTTGAAAACCCT+AGG 0.618350 3_3:-65734010 Msa0465400:CDS
AGAAGGTATTGGACCAAAGG+AGG 0.622045 3_3:-65734281 Msa0465400:CDS
GTTAGCATGTCACCAGACAT+TGG 0.624948 3_3:+65734455 None:intergenic
TTCTACAGCCTCCACCAACA+GGG 0.626747 3_3:+65734243 None:intergenic
TGGTAGGAAGGTACATGATG+TGG 0.632743 3_3:+65734155 None:intergenic
ACACTTAGGAACATCCCTGT+TGG 0.646210 3_3:-65734257 Msa0465400:CDS
TTTGGATATGGATCATGGAG+TGG 0.646639 3_3:-65733618 Msa0465400:CDS
GTTGATCAAAGGGTTTGTTG+TGG 0.647747 3_3:+65733572 None:intergenic
TTTAGGGATAGGTCATGTGG+TGG 0.663306 3_3:+65734392 None:intergenic
ACTACAGTCTCTCTCAGCCA+AGG 0.663924 3_3:-65734322 Msa0465400:CDS
GTGTGAGTTGAATCACACCT+TGG 0.665322 3_3:+65734365 None:intergenic
TCCATATGATGCTAATGATG+AGG 0.665364 3_3:-65733739 Msa0465400:CDS
AATGCATGATGAAAATTCTG+TGG 0.671096 3_3:+65733837 None:intergenic
CATCATCCATGATAGAGAGG+AGG 0.679330 3_3:-65734421 Msa0465400:CDS
ATCCAAAAGGAAACACACCA+AGG 0.706145 3_3:+65733309 None:intergenic
TATGCTGTAATGTAACATCG+AGG 0.752266 3_3:-65733228 Msa0465400:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAATTTTGATAATTATTT+TGG - chr3_3:65734437-65734456 Msa0465400:CDS 10.0%
!!! AGAAATTTTGATAATTATTT+TGG - chr3_3:65734437-65734456 Msa0465400:CDS 10.0%
!! AAGATAAGAAAAACAAAATT+AGG - chr3_3:65733702-65733721 Msa0465400:CDS 15.0%
!! AGATAAGAAAAACAAAATTA+GGG - chr3_3:65733703-65733722 Msa0465400:CDS 15.0%
!! ACATATTTATATAATCCAAA+AGG + chr3_3:65735077-65735096 None:intergenic 15.0%
!! AAGATAAGAAAAACAAAATT+AGG - chr3_3:65733702-65733721 Msa0465400:CDS 15.0%
!! AGATAAGAAAAACAAAATTA+GGG - chr3_3:65733703-65733722 Msa0465400:CDS 15.0%
!! ACATATTTATATAATCCAAA+AGG + chr3_3:65735077-65735096 None:intergenic 15.0%
!! TAAACAAAATGAAAGGAAAA+TGG + chr3_3:65733441-65733460 None:intergenic 20.0%
!! AACATGATAAACAAAATGAA+AGG + chr3_3:65733448-65733467 None:intergenic 20.0%
!! ACATGCATTTATCAAATTAA+TGG - chr3_3:65733482-65733501 Msa0465400:three_prime_UTR 20.0%
!!! TTCTTTTATACAAAATTGTC+AGG - chr3_3:65733854-65733873 Msa0465400:CDS 20.0%
!!! TCTTTTATACAAAATTGTCA+GGG - chr3_3:65733855-65733874 Msa0465400:CDS 20.0%
!!! TAAGTGATCATTTGATTTTT+TGG + chr3_3:65734171-65734190 None:intergenic 20.0%
!! TGATCATATGAATATGAATA+TGG - chr3_3:65734466-65734485 Msa0465400:CDS 20.0%
!! GATCATATGAATATGAATAT+GGG - chr3_3:65734467-65734486 Msa0465400:CDS 20.0%
!! ATATACATAAAGTCTTTGTA+TGG - chr3_3:65734898-65734917 Msa0465400:intron 20.0%
!! TATACATAAAGTCTTTGTAT+GGG - chr3_3:65734899-65734918 Msa0465400:intron 20.0%
!! TAAACAAAATGAAAGGAAAA+TGG + chr3_3:65733441-65733460 None:intergenic 20.0%
!! AACATGATAAACAAAATGAA+AGG + chr3_3:65733448-65733467 None:intergenic 20.0%
!! ACATGCATTTATCAAATTAA+TGG - chr3_3:65733482-65733501 Msa0465400:three_prime_UTR 20.0%
!!! TTCTTTTATACAAAATTGTC+AGG - chr3_3:65733854-65733873 Msa0465400:CDS 20.0%
!!! TCTTTTATACAAAATTGTCA+GGG - chr3_3:65733855-65733874 Msa0465400:CDS 20.0%
!!! TAAGTGATCATTTGATTTTT+TGG + chr3_3:65734171-65734190 None:intergenic 20.0%
!! TGATCATATGAATATGAATA+TGG - chr3_3:65734466-65734485 Msa0465400:CDS 20.0%
!! GATCATATGAATATGAATAT+GGG - chr3_3:65734467-65734486 Msa0465400:CDS 20.0%
!! ATATACATAAAGTCTTTGTA+TGG - chr3_3:65734898-65734917 Msa0465400:intron 20.0%
!! TATACATAAAGTCTTTGTAT+GGG - chr3_3:65734899-65734918 Msa0465400:intron 20.0%
! AAATTAATGGTGTAGTAGTT+TGG - chr3_3:65733495-65733514 Msa0465400:three_prime_UTR 25.0%
!! GAAAAGAGAATTTTATGCTT+AGG - chr3_3:65733517-65733536 Msa0465400:three_prime_UTR 25.0%
!!! TTCACTTTTAATCATGAGAT+CGG + chr3_3:65733657-65733676 None:intergenic 25.0%
!!! TGGAATTGGATTATTTTACA+TGG + chr3_3:65733774-65733793 None:intergenic 25.0%
!!! TTAATTTGTCTTGTTGGAAT+TGG + chr3_3:65733788-65733807 None:intergenic 25.0%
!!! AATGTGTTAATTTGTCTTGT+TGG + chr3_3:65733794-65733813 None:intergenic 25.0%
! AAGAAAGTTGAAGATCTTTA+GGG + chr3_3:65734247-65734266 None:intergenic 25.0%
! AAAGAAAGTTGAAGATCTTT+AGG + chr3_3:65734248-65734267 None:intergenic 25.0%
! ATATGATGAATGGACAAAAT+GGG - chr3_3:65734507-65734526 Msa0465400:intron 25.0%
! ATTCAAGTGACAATAGTTTA+GGG + chr3_3:65734688-65734707 None:intergenic 25.0%
! TATGAAGAAAGTGATTGATT+AGG + chr3_3:65734863-65734882 None:intergenic 25.0%
! CGTTTCTTTCTATAAATCAA+GGG - chr3_3:65734961-65734980 Msa0465400:intron 25.0%
! GTTTCTTTCTATAAATCAAG+GGG - chr3_3:65734962-65734981 Msa0465400:intron 25.0%
!!! ATTTTTTGTCTCTATGTTTG+TGG - chr3_3:65735236-65735255 Msa0465400:five_prime_UTR 25.0%
!!! TTTTTTGTCTCTATGTTTGT+GGG - chr3_3:65735237-65735256 Msa0465400:five_prime_UTR 25.0%
! AAATTAATGGTGTAGTAGTT+TGG - chr3_3:65733495-65733514 Msa0465400:three_prime_UTR 25.0%
!! GAAAAGAGAATTTTATGCTT+AGG - chr3_3:65733517-65733536 Msa0465400:three_prime_UTR 25.0%
!!! TTCACTTTTAATCATGAGAT+CGG + chr3_3:65733657-65733676 None:intergenic 25.0%
!!! TGGAATTGGATTATTTTACA+TGG + chr3_3:65733774-65733793 None:intergenic 25.0%
!!! TTAATTTGTCTTGTTGGAAT+TGG + chr3_3:65733788-65733807 None:intergenic 25.0%
!!! AATGTGTTAATTTGTCTTGT+TGG + chr3_3:65733794-65733813 None:intergenic 25.0%
! AAGAAAGTTGAAGATCTTTA+GGG + chr3_3:65734247-65734266 None:intergenic 25.0%
! AAAGAAAGTTGAAGATCTTT+AGG + chr3_3:65734248-65734267 None:intergenic 25.0%
! ATATGATGAATGGACAAAAT+GGG - chr3_3:65734507-65734526 Msa0465400:intron 25.0%
! ATTCAAGTGACAATAGTTTA+GGG + chr3_3:65734688-65734707 None:intergenic 25.0%
! TATGAAGAAAGTGATTGATT+AGG + chr3_3:65734863-65734882 None:intergenic 25.0%
! CGTTTCTTTCTATAAATCAA+GGG - chr3_3:65734961-65734980 Msa0465400:intron 25.0%
! GTTTCTTTCTATAAATCAAG+GGG - chr3_3:65734962-65734981 Msa0465400:intron 25.0%
!!! ATTTTTTGTCTCTATGTTTG+TGG - chr3_3:65735236-65735255 Msa0465400:five_prime_UTR 25.0%
!!! TTTTTTGTCTCTATGTTTGT+GGG - chr3_3:65735237-65735256 Msa0465400:five_prime_UTR 25.0%
AGAAGAAAATGAAAGAGGAT+AGG + chr3_3:65733222-65733241 None:intergenic 30.0%
! ATCCTCTTTCATTTTCTTCT+CGG - chr3_3:65733222-65733241 Msa0465400:three_prime_UTR 30.0%
AAAATGGTATACAATGTGCA+TGG + chr3_3:65733425-65733444 None:intergenic 30.0%
CATGATCATTTGAATTGCTA+TGG - chr3_3:65733592-65733611 Msa0465400:CDS 30.0%
GATCTCATGATTAAAAGTGA+AGG - chr3_3:65733656-65733675 Msa0465400:CDS 30.0%
TCTCACCTAAGTAACTTATT+TGG - chr3_3:65734284-65734303 Msa0465400:CDS 30.0%
TAGCTCCAAATAAGTTACTT+AGG + chr3_3:65734292-65734311 None:intergenic 30.0%
! AGTAACTTATTTGGAGCTAA+TGG - chr3_3:65734293-65734312 Msa0465400:CDS 30.0%
ATTAGGAAACCCTAATTTCA+TGG - chr3_3:65734319-65734338 Msa0465400:CDS 30.0%
ACTTGTTCTCCATGAAATTA+GGG + chr3_3:65734331-65734350 None:intergenic 30.0%
TACTTGTTCTCCATGAAATT+AGG + chr3_3:65734332-65734351 None:intergenic 30.0%
! ATGATGGAAAGTAAGTTAGA+AGG - chr3_3:65734395-65734414 Msa0465400:CDS 30.0%
! AGTAAGTTAGAAGGCATAAT+TGG - chr3_3:65734404-65734423 Msa0465400:CDS 30.0%
! GTAAGTTAGAAGGCATAATT+GGG - chr3_3:65734405-65734424 Msa0465400:CDS 30.0%
ATGAATATGAATATGGGTGT+TGG - chr3_3:65734473-65734492 Msa0465400:CDS 30.0%
TGAATATGAATATGGGTGTT+GGG - chr3_3:65734474-65734493 Msa0465400:CDS 30.0%
GATATGATGAATGGACAAAA+TGG - chr3_3:65734506-65734525 Msa0465400:intron 30.0%
AATGCATGATGAAAATTCTG+TGG + chr3_3:65734536-65734555 None:intergenic 30.0%
! CAGAATTTTCATCATGCATT+TGG - chr3_3:65734536-65734555 Msa0465400:intron 30.0%
! AATTTTCATCATGCATTTGG+TGG - chr3_3:65734539-65734558 Msa0465400:intron 30.0%
TAGCAATGGTGCTTATTTAA+TGG - chr3_3:65734586-65734605 Msa0465400:intron 30.0%
CATTCAAGTGACAATAGTTT+AGG + chr3_3:65734689-65734708 None:intergenic 30.0%
! CTAAACTATTGTCACTTGAA+TGG - chr3_3:65734687-65734706 Msa0465400:intron 30.0%
AAAGTGATTGATTAGGTCAT+TGG + chr3_3:65734856-65734875 None:intergenic 30.0%
GCGTTTCTTTCTATAAATCA+AGG - chr3_3:65734960-65734979 Msa0465400:intron 30.0%
TACTGAATTAACCAAGAGAT+GGG - chr3_3:65734999-65735018 Msa0465400:CDS 30.0%
! TTTTTGTCTCTATGTTTGTG+GGG - chr3_3:65735238-65735257 Msa0465400:five_prime_UTR 30.0%
AGAAGAAAATGAAAGAGGAT+AGG + chr3_3:65733222-65733241 None:intergenic 30.0%
! ATCCTCTTTCATTTTCTTCT+CGG - chr3_3:65733222-65733241 Msa0465400:three_prime_UTR 30.0%
AAAATGGTATACAATGTGCA+TGG + chr3_3:65733425-65733444 None:intergenic 30.0%
CATGATCATTTGAATTGCTA+TGG - chr3_3:65733592-65733611 Msa0465400:CDS 30.0%
GATCTCATGATTAAAAGTGA+AGG - chr3_3:65733656-65733675 Msa0465400:CDS 30.0%
TCTCACCTAAGTAACTTATT+TGG - chr3_3:65734284-65734303 Msa0465400:CDS 30.0%
TAGCTCCAAATAAGTTACTT+AGG + chr3_3:65734292-65734311 None:intergenic 30.0%
! AGTAACTTATTTGGAGCTAA+TGG - chr3_3:65734293-65734312 Msa0465400:CDS 30.0%
ATTAGGAAACCCTAATTTCA+TGG - chr3_3:65734319-65734338 Msa0465400:CDS 30.0%
ACTTGTTCTCCATGAAATTA+GGG + chr3_3:65734331-65734350 None:intergenic 30.0%
TACTTGTTCTCCATGAAATT+AGG + chr3_3:65734332-65734351 None:intergenic 30.0%
! ATGATGGAAAGTAAGTTAGA+AGG - chr3_3:65734395-65734414 Msa0465400:CDS 30.0%
! AGTAAGTTAGAAGGCATAAT+TGG - chr3_3:65734404-65734423 Msa0465400:CDS 30.0%
! GTAAGTTAGAAGGCATAATT+GGG - chr3_3:65734405-65734424 Msa0465400:CDS 30.0%
ATGAATATGAATATGGGTGT+TGG - chr3_3:65734473-65734492 Msa0465400:CDS 30.0%
TGAATATGAATATGGGTGTT+GGG - chr3_3:65734474-65734493 Msa0465400:CDS 30.0%
GATATGATGAATGGACAAAA+TGG - chr3_3:65734506-65734525 Msa0465400:intron 30.0%
AATGCATGATGAAAATTCTG+TGG + chr3_3:65734536-65734555 None:intergenic 30.0%
! CAGAATTTTCATCATGCATT+TGG - chr3_3:65734536-65734555 Msa0465400:intron 30.0%
! AATTTTCATCATGCATTTGG+TGG - chr3_3:65734539-65734558 Msa0465400:intron 30.0%
TAGCAATGGTGCTTATTTAA+TGG - chr3_3:65734586-65734605 Msa0465400:intron 30.0%
CATTCAAGTGACAATAGTTT+AGG + chr3_3:65734689-65734708 None:intergenic 30.0%
! CTAAACTATTGTCACTTGAA+TGG - chr3_3:65734687-65734706 Msa0465400:intron 30.0%
AAAGTGATTGATTAGGTCAT+TGG + chr3_3:65734856-65734875 None:intergenic 30.0%
GCGTTTCTTTCTATAAATCA+AGG - chr3_3:65734960-65734979 Msa0465400:intron 30.0%
TACTGAATTAACCAAGAGAT+GGG - chr3_3:65734999-65735018 Msa0465400:CDS 30.0%
! TTTTTGTCTCTATGTTTGTG+GGG - chr3_3:65735238-65735257 Msa0465400:five_prime_UTR 30.0%
TGTTAAGTGAGAAGAGATAG+AGG + chr3_3:65733187-65733206 None:intergenic 35.0%
ATCCGAGAAGAAAATGAAAG+AGG + chr3_3:65733227-65733246 None:intergenic 35.0%
GTTATTGTCATTGCATTGCA+AGG + chr3_3:65733254-65733273 None:intergenic 35.0%
! ATCACACCTTGGACATTTTA+GGG + chr3_3:65733997-65734016 None:intergenic 35.0%
! AATCACACCTTGGACATTTT+AGG + chr3_3:65733998-65734017 None:intergenic 35.0%
GTTGTTGTAGTAGCAGAATT+TGG + chr3_3:65734030-65734049 None:intergenic 35.0%
!!! ATCTTTAGGGTTTTGATGGT+AGG + chr3_3:65734234-65734253 None:intergenic 35.0%
!!! GAAGATCTTTAGGGTTTTGA+TGG + chr3_3:65734238-65734257 None:intergenic 35.0%
GAGAACAAGTATAGCAATGT+TGG - chr3_3:65734341-65734360 Msa0465400:CDS 35.0%
CTTTCCATCATGAAGTCAAT+AGG + chr3_3:65734386-65734405 None:intergenic 35.0%
ATTGGAGGAGATATGATGAA+TGG - chr3_3:65734497-65734516 Msa0465400:CDS 35.0%
! TTTGGTGGAATGTCATTTGA+TGG - chr3_3:65734554-65734573 Msa0465400:intron 35.0%
TCCATATGATGCTAATGATG+AGG - chr3_3:65734631-65734650 Msa0465400:intron 35.0%
TCCTCATCATTAGCATCATA+TGG + chr3_3:65734635-65734654 None:intergenic 35.0%
! AGTGACAATAGTTTAGGGTT+TGG + chr3_3:65734683-65734702 None:intergenic 35.0%
AAAGGTCAGTCATTTGGATA+TGG - chr3_3:65734740-65734759 Msa0465400:intron 35.0%
AGTCATTTGGATATGGATCA+TGG - chr3_3:65734747-65734766 Msa0465400:intron 35.0%
AGTGGTATGATGAATGGTTA+TGG - chr3_3:65734770-65734789 Msa0465400:intron 35.0%
ACAACAAACCCTTTGATCAA+CGG - chr3_3:65734800-65734819 Msa0465400:intron 35.0%
ACATAAAGTCTTTGTATGGG+AGG - chr3_3:65734902-65734921 Msa0465400:intron 35.0%
CATAAAGTCTTTGTATGGGA+GGG - chr3_3:65734903-65734922 Msa0465400:intron 35.0%
CTACTGAATTAACCAAGAGA+TGG - chr3_3:65734998-65735017 Msa0465400:CDS 35.0%
TATGCTGTAATGTAACATCG+AGG - chr3_3:65735142-65735161 Msa0465400:five_prime_UTR 35.0%
ATGTAACATCGAGGAAGATA+TGG - chr3_3:65735151-65735170 Msa0465400:five_prime_UTR 35.0%
TGTTAAGTGAGAAGAGATAG+AGG + chr3_3:65733187-65733206 None:intergenic 35.0%
ATCCGAGAAGAAAATGAAAG+AGG + chr3_3:65733227-65733246 None:intergenic 35.0%
GTTATTGTCATTGCATTGCA+AGG + chr3_3:65733254-65733273 None:intergenic 35.0%
! ATCACACCTTGGACATTTTA+GGG + chr3_3:65733997-65734016 None:intergenic 35.0%
! AATCACACCTTGGACATTTT+AGG + chr3_3:65733998-65734017 None:intergenic 35.0%
GTTGTTGTAGTAGCAGAATT+TGG + chr3_3:65734030-65734049 None:intergenic 35.0%
!!! ATCTTTAGGGTTTTGATGGT+AGG + chr3_3:65734234-65734253 None:intergenic 35.0%
!!! GAAGATCTTTAGGGTTTTGA+TGG + chr3_3:65734238-65734257 None:intergenic 35.0%
GAGAACAAGTATAGCAATGT+TGG - chr3_3:65734341-65734360 Msa0465400:CDS 35.0%
CTTTCCATCATGAAGTCAAT+AGG + chr3_3:65734386-65734405 None:intergenic 35.0%
ATTGGAGGAGATATGATGAA+TGG - chr3_3:65734497-65734516 Msa0465400:CDS 35.0%
! TTTGGTGGAATGTCATTTGA+TGG - chr3_3:65734554-65734573 Msa0465400:intron 35.0%
TCCATATGATGCTAATGATG+AGG - chr3_3:65734631-65734650 Msa0465400:intron 35.0%
TCCTCATCATTAGCATCATA+TGG + chr3_3:65734635-65734654 None:intergenic 35.0%
! AGTGACAATAGTTTAGGGTT+TGG + chr3_3:65734683-65734702 None:intergenic 35.0%
AAAGGTCAGTCATTTGGATA+TGG - chr3_3:65734740-65734759 Msa0465400:intron 35.0%
AGTCATTTGGATATGGATCA+TGG - chr3_3:65734747-65734766 Msa0465400:intron 35.0%
AGTGGTATGATGAATGGTTA+TGG - chr3_3:65734770-65734789 Msa0465400:intron 35.0%
ACAACAAACCCTTTGATCAA+CGG - chr3_3:65734800-65734819 Msa0465400:intron 35.0%
ACATAAAGTCTTTGTATGGG+AGG - chr3_3:65734902-65734921 Msa0465400:intron 35.0%
CATAAAGTCTTTGTATGGGA+GGG - chr3_3:65734903-65734922 Msa0465400:intron 35.0%
CTACTGAATTAACCAAGAGA+TGG - chr3_3:65734998-65735017 Msa0465400:CDS 35.0%
TATGCTGTAATGTAACATCG+AGG - chr3_3:65735142-65735161 Msa0465400:five_prime_UTR 35.0%
ATGTAACATCGAGGAAGATA+TGG - chr3_3:65735151-65735170 Msa0465400:five_prime_UTR 35.0%
TTGTGTTGTGGTTGCTACAT+GGG + chr3_3:65733128-65733147 None:intergenic 40.0%
CATGTGTTTGTGTTGTGTTG+TGG + chr3_3:65733140-65733159 None:intergenic 40.0%
TTGTGATCAAGCAGTGTAGT+TGG + chr3_3:65733314-65733333 None:intergenic 40.0%
!! TCTGAGCTTGGCTTTTGAAT+GGG - chr3_3:65733335-65733354 Msa0465400:three_prime_UTR 40.0%
TTCTCTTCACGTCTGCAATA+TGG - chr3_3:65733364-65733383 Msa0465400:three_prime_UTR 40.0%
TGGAATCATCTGCAGATCAT+TGG - chr3_3:65733384-65733403 Msa0465400:three_prime_UTR 40.0%
AATTCACGATGAGTCAGGAA+TGG - chr3_3:65733881-65733900 Msa0465400:CDS 40.0%
GATTCATCTTCACCAATGTC+TGG - chr3_3:65733903-65733922 Msa0465400:CDS 40.0%
GTGACATGCTAACATGTTCA+AGG - chr3_3:65733925-65733944 Msa0465400:CDS 40.0%
!! CATTTTAGGGATAGGTCATG+TGG + chr3_3:65733984-65734003 None:intergenic 40.0%
ACCTATCCCTAAAATGTCCA+AGG - chr3_3:65733988-65734007 Msa0465400:CDS 40.0%
!! ACCTTGGACATTTTAGGGAT+AGG + chr3_3:65733992-65734011 None:intergenic 40.0%
ACTTCTGCAAGACTTGTAGA+AGG - chr3_3:65734072-65734091 Msa0465400:CDS 40.0%
! GCAAGACTTGTAGAAGGTAT+TGG - chr3_3:65734078-65734097 Msa0465400:CDS 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG - chr3_3:65734086-65734105 Msa0465400:CDS 40.0%
!! TTAGGGTTTTGATGGTAGGA+AGG + chr3_3:65734230-65734249 None:intergenic 40.0%
! TTTGGAGCTAATGGAGCATT+AGG - chr3_3:65734302-65734321 Msa0465400:CDS 40.0%
TCATGAAGTCAATAGGCCTA+GGG + chr3_3:65734379-65734398 None:intergenic 40.0%
ATCATGAAGTCAATAGGCCT+AGG + chr3_3:65734380-65734399 None:intergenic 40.0%
!! TAGGCCTATTGACTTCATGA+TGG - chr3_3:65734379-65734398 Msa0465400:CDS 40.0%
!! ATGAATATGGGTGTTGGGAT+TGG - chr3_3:65734479-65734498 Msa0465400:CDS 40.0%
GATGGAGGAAACAATAGCAA+TGG - chr3_3:65734572-65734591 Msa0465400:intron 40.0%
TTTGGATATGGATCATGGAG+TGG - chr3_3:65734752-65734771 Msa0465400:intron 40.0%
TCATGGAGTGGTATGATGAA+TGG - chr3_3:65734764-65734783 Msa0465400:intron 40.0%
!! GTTGATCAAAGGGTTTGTTG+TGG + chr3_3:65734801-65734820 None:intergenic 40.0%
ATCCAAAAGGAAACACACCA+AGG + chr3_3:65735064-65735083 None:intergenic 40.0%
TTGTGTTGTGGTTGCTACAT+GGG + chr3_3:65733128-65733147 None:intergenic 40.0%
CATGTGTTTGTGTTGTGTTG+TGG + chr3_3:65733140-65733159 None:intergenic 40.0%
TTGTGATCAAGCAGTGTAGT+TGG + chr3_3:65733314-65733333 None:intergenic 40.0%
!! TCTGAGCTTGGCTTTTGAAT+GGG - chr3_3:65733335-65733354 Msa0465400:three_prime_UTR 40.0%
TTCTCTTCACGTCTGCAATA+TGG - chr3_3:65733364-65733383 Msa0465400:three_prime_UTR 40.0%
TGGAATCATCTGCAGATCAT+TGG - chr3_3:65733384-65733403 Msa0465400:three_prime_UTR 40.0%
AATTCACGATGAGTCAGGAA+TGG - chr3_3:65733881-65733900 Msa0465400:CDS 40.0%
GATTCATCTTCACCAATGTC+TGG - chr3_3:65733903-65733922 Msa0465400:CDS 40.0%
GTGACATGCTAACATGTTCA+AGG - chr3_3:65733925-65733944 Msa0465400:CDS 40.0%
!! CATTTTAGGGATAGGTCATG+TGG + chr3_3:65733984-65734003 None:intergenic 40.0%
ACCTATCCCTAAAATGTCCA+AGG - chr3_3:65733988-65734007 Msa0465400:CDS 40.0%
!! ACCTTGGACATTTTAGGGAT+AGG + chr3_3:65733992-65734011 None:intergenic 40.0%
ACTTCTGCAAGACTTGTAGA+AGG - chr3_3:65734072-65734091 Msa0465400:CDS 40.0%
! GCAAGACTTGTAGAAGGTAT+TGG - chr3_3:65734078-65734097 Msa0465400:CDS 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG - chr3_3:65734086-65734105 Msa0465400:CDS 40.0%
!! TTAGGGTTTTGATGGTAGGA+AGG + chr3_3:65734230-65734249 None:intergenic 40.0%
! TTTGGAGCTAATGGAGCATT+AGG - chr3_3:65734302-65734321 Msa0465400:CDS 40.0%
TCATGAAGTCAATAGGCCTA+GGG + chr3_3:65734379-65734398 None:intergenic 40.0%
ATCATGAAGTCAATAGGCCT+AGG + chr3_3:65734380-65734399 None:intergenic 40.0%
!! TAGGCCTATTGACTTCATGA+TGG - chr3_3:65734379-65734398 Msa0465400:CDS 40.0%
!! ATGAATATGGGTGTTGGGAT+TGG - chr3_3:65734479-65734498 Msa0465400:CDS 40.0%
GATGGAGGAAACAATAGCAA+TGG - chr3_3:65734572-65734591 Msa0465400:intron 40.0%
TTTGGATATGGATCATGGAG+TGG - chr3_3:65734752-65734771 Msa0465400:intron 40.0%
TCATGGAGTGGTATGATGAA+TGG - chr3_3:65734764-65734783 Msa0465400:intron 40.0%
!! GTTGATCAAAGGGTTTGTTG+TGG + chr3_3:65734801-65734820 None:intergenic 40.0%
ATCCAAAAGGAAACACACCA+AGG + chr3_3:65735064-65735083 None:intergenic 40.0%
GTTGTGTTGTGGTTGCTACA+TGG + chr3_3:65733129-65733148 None:intergenic 45.0%
CTTGATCACAACTCTGAGCT+TGG - chr3_3:65733323-65733342 Msa0465400:three_prime_UTR 45.0%
!! CTCTGAGCTTGGCTTTTGAA+TGG - chr3_3:65733334-65733353 Msa0465400:three_prime_UTR 45.0%
! ATCTGCAGATCATTGGTTGC+AGG - chr3_3:65733391-65733410 Msa0465400:three_prime_UTR 45.0%
GTTAGCATGTCACCAGACAT+TGG + chr3_3:65733918-65733937 None:intergenic 45.0%
CTCCTCTCTATCATGGATGA+TGG + chr3_3:65733951-65733970 None:intergenic 45.0%
CATCATCCATGATAGAGAGG+AGG - chr3_3:65733949-65733968 Msa0465400:CDS 45.0%
TCTTAGCCTCCTCTCTATCA+TGG + chr3_3:65733958-65733977 None:intergenic 45.0%
TTTAGGGATAGGTCATGTGG+TGG + chr3_3:65733981-65734000 None:intergenic 45.0%
! GTGTGAGTTGAATCACACCT+TGG + chr3_3:65734008-65734027 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTACCT+TGG + chr3_3:65734068-65734087 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG - chr3_3:65734089-65734108 Msa0465400:CDS 45.0%
GTTCCTAAGTGTTCCTCCTT+TGG + chr3_3:65734105-65734124 None:intergenic 45.0%
ACACTTAGGAACATCCCTGT+TGG - chr3_3:65734113-65734132 Msa0465400:CDS 45.0%
! AGGAAGGTACATGATGTGGT+TGG + chr3_3:65734214-65734233 None:intergenic 45.0%
! TGGTAGGAAGGTACATGATG+TGG + chr3_3:65734218-65734237 None:intergenic 45.0%
GGTGAGAGAATTGCACATCA+GGG + chr3_3:65734271-65734290 None:intergenic 45.0%
AGGTGAGAGAATTGCACATC+AGG + chr3_3:65734272-65734291 None:intergenic 45.0%
TTGGCATGCTTGAAAACCCT+AGG - chr3_3:65734360-65734379 Msa0465400:CDS 45.0%
!! AATATGGGTGTTGGGATTGG+AGG - chr3_3:65734482-65734501 Msa0465400:CDS 45.0%
! GGTGGAATGTCATTTGATGG+AGG - chr3_3:65734557-65734576 Msa0465400:intron 45.0%
CTTGAATGGCAGCAAGATCA+AGG - chr3_3:65734701-65734720 Msa0465400:intron 45.0%
GCTGGAAAAGGTCAGTCATT+TGG - chr3_3:65734734-65734753 Msa0465400:intron 45.0%
GAGCTTAGCCGTTGATCAAA+GGG + chr3_3:65734811-65734830 None:intergenic 45.0%
AGAGCTTAGCCGTTGATCAA+AGG + chr3_3:65734812-65734831 None:intergenic 45.0%
AGAGTCCAAATCTACTGCCT+TGG - chr3_3:65735044-65735063 Msa0465400:five_prime_UTR 45.0%
ACACACCAAGGCAGTAGATT+TGG + chr3_3:65735052-65735071 None:intergenic 45.0%
!! TGCCTTGGTGTGTTTCCTTT+TGG - chr3_3:65735059-65735078 Msa0465400:five_prime_UTR 45.0%
GTTGTGTTGTGGTTGCTACA+TGG + chr3_3:65733129-65733148 None:intergenic 45.0%
CTTGATCACAACTCTGAGCT+TGG - chr3_3:65733323-65733342 Msa0465400:three_prime_UTR 45.0%
!! CTCTGAGCTTGGCTTTTGAA+TGG - chr3_3:65733334-65733353 Msa0465400:three_prime_UTR 45.0%
! ATCTGCAGATCATTGGTTGC+AGG - chr3_3:65733391-65733410 Msa0465400:three_prime_UTR 45.0%
GTTAGCATGTCACCAGACAT+TGG + chr3_3:65733918-65733937 None:intergenic 45.0%
CTCCTCTCTATCATGGATGA+TGG + chr3_3:65733951-65733970 None:intergenic 45.0%
CATCATCCATGATAGAGAGG+AGG - chr3_3:65733949-65733968 Msa0465400:CDS 45.0%
TCTTAGCCTCCTCTCTATCA+TGG + chr3_3:65733958-65733977 None:intergenic 45.0%
TTTAGGGATAGGTCATGTGG+TGG + chr3_3:65733981-65734000 None:intergenic 45.0%
! GTGTGAGTTGAATCACACCT+TGG + chr3_3:65734008-65734027 None:intergenic 45.0%
!! CAAGTCTTGCAGAAGTACCT+TGG + chr3_3:65734068-65734087 None:intergenic 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG - chr3_3:65734089-65734108 Msa0465400:CDS 45.0%
GTTCCTAAGTGTTCCTCCTT+TGG + chr3_3:65734105-65734124 None:intergenic 45.0%
ACACTTAGGAACATCCCTGT+TGG - chr3_3:65734113-65734132 Msa0465400:CDS 45.0%
! AGGAAGGTACATGATGTGGT+TGG + chr3_3:65734214-65734233 None:intergenic 45.0%
! TGGTAGGAAGGTACATGATG+TGG + chr3_3:65734218-65734237 None:intergenic 45.0%
GGTGAGAGAATTGCACATCA+GGG + chr3_3:65734271-65734290 None:intergenic 45.0%
AGGTGAGAGAATTGCACATC+AGG + chr3_3:65734272-65734291 None:intergenic 45.0%
TTGGCATGCTTGAAAACCCT+AGG - chr3_3:65734360-65734379 Msa0465400:CDS 45.0%
!! AATATGGGTGTTGGGATTGG+AGG - chr3_3:65734482-65734501 Msa0465400:CDS 45.0%
! GGTGGAATGTCATTTGATGG+AGG - chr3_3:65734557-65734576 Msa0465400:intron 45.0%
CTTGAATGGCAGCAAGATCA+AGG - chr3_3:65734701-65734720 Msa0465400:intron 45.0%
GCTGGAAAAGGTCAGTCATT+TGG - chr3_3:65734734-65734753 Msa0465400:intron 45.0%
GAGCTTAGCCGTTGATCAAA+GGG + chr3_3:65734811-65734830 None:intergenic 45.0%
AGAGCTTAGCCGTTGATCAA+AGG + chr3_3:65734812-65734831 None:intergenic 45.0%
AGAGTCCAAATCTACTGCCT+TGG - chr3_3:65735044-65735063 Msa0465400:five_prime_UTR 45.0%
ACACACCAAGGCAGTAGATT+TGG + chr3_3:65735052-65735071 None:intergenic 45.0%
!! TGCCTTGGTGTGTTTCCTTT+TGG - chr3_3:65735059-65735078 Msa0465400:five_prime_UTR 45.0%
!! ATAAAAAAAAAAAAAATACA+TGG + chr3_3:65734937-65734956 None:intergenic 5.0%
!! ATAAAAAAAAAAAAAATACA+TGG + chr3_3:65734937-65734956 None:intergenic 5.0%
TTGTGGTTGCTACATGGGAC+GGG + chr3_3:65733123-65733142 None:intergenic 50.0%
GTTGTGGTTGCTACATGGGA+CGG + chr3_3:65733124-65733143 None:intergenic 50.0%
GGCACAATTCACGATGAGTC+AGG - chr3_3:65733876-65733895 Msa0465400:CDS 50.0%
GGCCATCATCCATGATAGAG+AGG - chr3_3:65733946-65733965 Msa0465400:CDS 50.0%
ACTACAGTCTCTCTCAGCCA+AGG - chr3_3:65734048-65734067 Msa0465400:CDS 50.0%
GGACCAAAGGAGGAACACTT+AGG - chr3_3:65734099-65734118 Msa0465400:CDS 50.0%
CTTAGGAACATCCCTGTTGG+TGG - chr3_3:65734116-65734135 Msa0465400:CDS 50.0%
TTCTACAGCCTCCACCAACA+GGG + chr3_3:65734130-65734149 None:intergenic 50.0%
TTTCTACAGCCTCCACCAAC+AGG + chr3_3:65734131-65734150 None:intergenic 50.0%
GATCAAGGTTGCTCTGATGC+TGG - chr3_3:65734716-65734735 Msa0465400:intron 50.0%
GGTTGCTCTGATGCTGGAAA+AGG - chr3_3:65734722-65734741 Msa0465400:intron 50.0%
TTCACACTCGACCCATCTCT+TGG + chr3_3:65735013-65735032 None:intergenic 50.0%
TCTTTGTGTGCGACACGTCA+TGG - chr3_3:65735102-65735121 Msa0465400:five_prime_UTR 50.0%
CGACACGTCATGGAAGCTTT+AGG - chr3_3:65735112-65735131 Msa0465400:five_prime_UTR 50.0%
TTGTGGTTGCTACATGGGAC+GGG + chr3_3:65733123-65733142 None:intergenic 50.0%
GTTGTGGTTGCTACATGGGA+CGG + chr3_3:65733124-65733143 None:intergenic 50.0%
GGCACAATTCACGATGAGTC+AGG - chr3_3:65733876-65733895 Msa0465400:CDS 50.0%
GGCCATCATCCATGATAGAG+AGG - chr3_3:65733946-65733965 Msa0465400:CDS 50.0%
ACTACAGTCTCTCTCAGCCA+AGG - chr3_3:65734048-65734067 Msa0465400:CDS 50.0%
GGACCAAAGGAGGAACACTT+AGG - chr3_3:65734099-65734118 Msa0465400:CDS 50.0%
CTTAGGAACATCCCTGTTGG+TGG - chr3_3:65734116-65734135 Msa0465400:CDS 50.0%
TTCTACAGCCTCCACCAACA+GGG + chr3_3:65734130-65734149 None:intergenic 50.0%
TTTCTACAGCCTCCACCAAC+AGG + chr3_3:65734131-65734150 None:intergenic 50.0%
GATCAAGGTTGCTCTGATGC+TGG - chr3_3:65734716-65734735 Msa0465400:intron 50.0%
GGTTGCTCTGATGCTGGAAA+AGG - chr3_3:65734722-65734741 Msa0465400:intron 50.0%
TTCACACTCGACCCATCTCT+TGG + chr3_3:65735013-65735032 None:intergenic 50.0%
TCTTTGTGTGCGACACGTCA+TGG - chr3_3:65735102-65735121 Msa0465400:five_prime_UTR 50.0%
CGACACGTCATGGAAGCTTT+AGG - chr3_3:65735112-65735131 Msa0465400:five_prime_UTR 50.0%
! AGGAACATCCCTGTTGGTGG+AGG - chr3_3:65734119-65734138 Msa0465400:CDS 55.0%
! AGGAACATCCCTGTTGGTGG+AGG - chr3_3:65734119-65734138 Msa0465400:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 65733115 65735277 65733115 ID=Msa0465400;Name=Msa0465400
chr3_3 mRNA 65733115 65735277 65733115 ID=Msa0465400-mRNA-1;Parent=Msa0465400;Name=Msa0465400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=238|1|1|1|1|1|2|451|336
chr3_3 exon 65733115 65734516 65733115 ID=Msa0465400-mRNA-1:exon:14654;Parent=Msa0465400-mRNA-1
chr3_3 exon 65734980 65735277 65734980 ID=Msa0465400-mRNA-1:exon:14653;Parent=Msa0465400-mRNA-1
chr3_3 five_prime_UTR 65735040 65735277 65735040 ID=Msa0465400-mRNA-1:five_prime_utr;Parent=Msa0465400-mRNA-1
chr3_3 CDS 65734980 65735039 65734980 ID=Msa0465400-mRNA-1:cds;Parent=Msa0465400-mRNA-1
chr3_3 CDS 65733566 65734516 65733566 ID=Msa0465400-mRNA-1:cds;Parent=Msa0465400-mRNA-1
chr3_3 three_prime_UTR 65733115 65733565 65733115 ID=Msa0465400-mRNA-1:three_prime_utr;Parent=Msa0465400-mRNA-1
Gene Sequence

>Msa0465400

ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCAATGTCTGGTGACATGCTAACATGTTCAAGGCCATCATCCATGATAGAGAGGAGGCTAAGACCACCACATGACCTATCCCTAAAATGTCCAAGGTGTGATTCAACTCACACCAAATTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGAGGAACACTTAGGAACATCCCTGTTGGTGGAGGCTGTAGAAAAAACAAAAAAGTTTCTTCCAAAAAATCAAATGATCACTTAGCTAATAATAATATTCAAAACCAACCACATCATGTACCTTCCTACCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTGCAATTCTCTCACCTAAGTAACTTATTTGGAGCTAATGGAGCATTAGGAAACCCTAATTTCATGGAGAACAAGTATAGCAATGTTGGCATGCTTGAAAACCCTAGGCCTATTGACTTCATGATGGAAAGTAAGTTAGAAGGCATAATTGGGAGTAGTTCTAGAAATTTTGATAATTATTTTGGAAATAGTGATCATATGAATATGAATATGGGTGTTGGGATTGGAGGAGATATGATGAATGGACAAAATGGGTTGCCACAGAATTTTCATCATGCATTTGGTGGAATGTCATTTGATGGAGGAAACAATAGCAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATGAGGATCATAATGCTTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCACTTGAATGGCAGCAAGATCAAGGTTGCTCTGATGCTGGAAAAGGTCAGTCATTTGGATATGGATCATGGAGTGGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTAA

Protein sequence

>Msa0465400

MGLSSLHVCNMESSADHWLQGTIHDESGMDSSSPMSGDMLTCSRPSSMIERRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDHLANNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLFGANGALGNPNFMENKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNSDHMNMNMGVGIGGDMMNGQNGLPQNFHHAFGGMSFDGGNNSNGAYLMDSCQRLMLPYDANDEDHNASIDVKPNPKLLSLEWQQDQGCSDAGKGQSFGYGSWSGMMNGYGSSTTNPLING*