Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904660 | XP_013450932.1 | 98.921 | 278 | 3 | 0 | 1 | 278 | 1 | 278 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904660 | sp|P42054|VDAC_PEA | 72.662 | 278 | 74 | 1 | 1 | 278 | 1 | 276 | 1.08e-150 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607610 | Msa0904660 | 0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0687870 | Msa0904660 | 0.801555 | 8.520592e-49 | -8.615850e-47 |
| Msa0871500 | Msa0904660 | 0.970229 | 2.666494e-131 | -8.615850e-47 |
| Msa0904660 | Msa1401390 | 0.801078 | 1.067075e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904660 | MtrunA17_Chr6g0452811 | 98.921 | 278 | 3 | 0 | 1 | 278 | 1 | 278 | 0.0 | 558 |
| Msa0904660 | MtrunA17_Chr7g0216561 | 68.231 | 277 | 86 | 1 | 2 | 278 | 3 | 277 | 1.59e-143 | 404 |
| Msa0904660 | MtrunA17_Chr8g0362621 | 62.230 | 278 | 103 | 1 | 1 | 278 | 1 | 276 | 4.21e-128 | 365 |
| Msa0904660 | MtrunA17_Chr5g0401201 | 49.640 | 278 | 138 | 1 | 1 | 278 | 1 | 276 | 2.33e-92 | 274 |
| Msa0904660 | MtrunA17_Chr4g0072511 | 45.552 | 281 | 148 | 3 | 1 | 278 | 1 | 279 | 1.98e-78 | 239 |
| Msa0904660 | MtrunA17_Chr1g0152591 | 44.404 | 277 | 152 | 1 | 2 | 278 | 3 | 277 | 2.09e-76 | 233 |
| Msa0904660 | MtrunA17_Chr4g0060181 | 32.632 | 285 | 144 | 5 | 1 | 278 | 1 | 244 | 4.18e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904660 | AT3G01280.1 | 65.468 | 278 | 94 | 1 | 1 | 278 | 1 | 276 | 5.45e-140 | 395 |
| Msa0904660 | AT5G15090.1 | 65.468 | 278 | 92 | 2 | 1 | 278 | 1 | 274 | 3.26e-135 | 383 |
| Msa0904660 | AT5G15090.2 | 65.468 | 278 | 92 | 2 | 1 | 278 | 1 | 274 | 3.26e-135 | 383 |
| Msa0904660 | AT5G67500.3 | 47.842 | 278 | 143 | 1 | 1 | 278 | 1 | 276 | 1.95e-93 | 277 |
| Msa0904660 | AT5G67500.1 | 47.212 | 269 | 140 | 1 | 1 | 269 | 1 | 267 | 5.70e-88 | 264 |
| Msa0904660 | AT5G67500.2 | 43.607 | 305 | 143 | 2 | 1 | 278 | 1 | 303 | 1.87e-87 | 263 |
| Msa0904660 | AT5G57490.1 | 44.604 | 278 | 150 | 2 | 1 | 278 | 1 | 274 | 1.58e-81 | 247 |
| Msa0904660 | AT3G49920.1 | 35.971 | 278 | 126 | 2 | 1 | 278 | 1 | 226 | 4.19e-54 | 175 |
| Msa0904660 | AT3G49920.2 | 45.133 | 113 | 62 | 0 | 1 | 113 | 1 | 113 | 7.76e-26 | 99.4 |
| Msa0904660 | AT3G49920.4 | 45.133 | 113 | 62 | 0 | 1 | 113 | 1 | 113 | 7.76e-26 | 99.4 |
| Msa0904660 | AT5G37610.1 | 36.747 | 166 | 99 | 3 | 113 | 276 | 2 | 163 | 3.83e-25 | 98.6 |
| Msa0904660 | AT3G49920.3 | 54.545 | 77 | 35 | 0 | 1 | 77 | 1 | 77 | 1.79e-23 | 92.4 |
Find 84 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCATTCTTCACCATTTC+TGG | 0.094067 | 6_2:-2428027 | Msa0904660:CDS |
| TGGGGCATTATTCAATAATT+TGG | 0.105065 | 6_2:-2427626 | Msa0904660:three_prime_UTR |
| GAAGAAGAAGAAGAGGAATT+AGG | 0.194282 | 6_2:+2432031 | None:intergenic |
| GAAATGGTGAAGAATGATTT+TGG | 0.230254 | 6_2:+2428030 | None:intergenic |
| TTTGAGGTTGGTTCTATTAT+TGG | 0.245423 | 6_2:-2427861 | Msa0904660:three_prime_UTR |
| AAGAAGAAGAAGAGGAATTA+GGG | 0.288559 | 6_2:+2432032 | None:intergenic |
| TGCACTCTTCTCAATGGCCT+TGG | 0.292656 | 6_2:+2427993 | None:intergenic |
| CATGGTAGTACGAAGCATTC+AGG | 0.324216 | 6_2:+2428226 | None:intergenic |
| GGGGCATTATTCAATAATTT+GGG | 0.329501 | 6_2:-2427625 | Msa0904660:three_prime_UTR |
| CCAGACTTTAGTTCAGGTTC+AGG | 0.331087 | 6_2:+2429688 | None:intergenic |
| TCAAGATGTAGCACCAGTTT+GGG | 0.335710 | 6_2:-2427645 | Msa0904660:three_prime_UTR |
| ACACCAGAAAAGTTGGCAAT+TGG | 0.338198 | 6_2:+2429504 | None:intergenic |
| CTTTCTTATGACACCAAAAC+TGG | 0.346527 | 6_2:-2429447 | Msa0904660:CDS |
| GTTGGTTGTTGAGAGAAAAT+TGG | 0.349847 | 6_2:+2432003 | None:intergenic |
| TCAAGACTATTCTTAGCTTC+AGG | 0.359070 | 6_2:-2429714 | Msa0904660:CDS |
| TCTTGTGAACACGCCAGTTT+TGG | 0.359359 | 6_2:+2429434 | None:intergenic |
| GTCAAGATGTAGCACCAGTT+TGG | 0.359734 | 6_2:-2427646 | Msa0904660:three_prime_UTR |
| CGAAGCAATCAAATCGTCTT+TGG | 0.360628 | 6_2:+2429389 | None:intergenic |
| AAGTAGTGAGAGTGAACTTC+TGG | 0.367066 | 6_2:+2431793 | None:intergenic |
| GACTCTTGGATCCATATTCA+TGG | 0.373377 | 6_2:+2427666 | None:intergenic |
| TCATCATAGGTAAATTAATA+TGG | 0.383102 | 6_2:-2427574 | Msa0904660:intron |
| CACCAGAAAAGTTGGCAATT+GGG | 0.385907 | 6_2:+2429505 | None:intergenic |
| GTGGTTGTGCCCCATGAATA+TGG | 0.407405 | 6_2:-2427677 | Msa0904660:three_prime_UTR |
| ACCTTTCCAGACTTTAGTTC+AGG | 0.409767 | 6_2:+2429682 | None:intergenic |
| TGCAAGAATTGGAATAGCTT+TGG | 0.416994 | 6_2:-2427974 | Msa0904660:CDS |
| TCCAATAACACCAGAAAAGT+TGG | 0.423097 | 6_2:+2429497 | None:intergenic |
| CTGGGATTTCCGCCAGCATT+GGG | 0.423944 | 6_2:-2429539 | Msa0904660:CDS |
| CCTGGACCCTTTGACATTGT+TGG | 0.425990 | 6_2:+2431985 | None:intergenic |
| ACTACATTTGAATCATAATC+AGG | 0.429519 | 6_2:+2427484 | None:intergenic |
| ATTGAGAAGAGTGCAAGAAT+TGG | 0.429625 | 6_2:-2427985 | Msa0904660:CDS |
| GGTGTCCACCTCACCAGAAA+TGG | 0.430124 | 6_2:+2428014 | None:intergenic |
| GCTGGGATTTCCGCCAGCAT+TGG | 0.432425 | 6_2:-2429540 | Msa0904660:CDS |
| CTCACTACTTATTCACCTAC+TGG | 0.441736 | 6_2:-2431780 | Msa0904660:CDS |
| AATTCTTGCACTCTTCTCAA+TGG | 0.442907 | 6_2:+2427987 | None:intergenic |
| CAGTACTTGCATGACTATGC+TGG | 0.447339 | 6_2:-2429558 | Msa0904660:CDS |
| ACTGTTAATGAGCCAGCTCC+TGG | 0.450210 | 6_2:-2429739 | Msa0904660:CDS |
| CCTGAACCTGAACTAAAGTC+TGG | 0.459932 | 6_2:-2429688 | Msa0904660:CDS |
| TATTGAATAATGCCCCAAAC+TGG | 0.467139 | 6_2:+2427632 | None:intergenic |
| TATTGCAGATCTTCTTTACA+AGG | 0.467342 | 6_2:-2431829 | Msa0904660:intron |
| TTTGCTCAAAATTCCTCTCA+AGG | 0.480557 | 6_2:+2427943 | None:intergenic |
| TAGTAATGGGATTGACTACA+TGG | 0.484241 | 6_2:+2428208 | None:intergenic |
| CCCATTACTAAAACAGCTGT+TGG | 0.486039 | 6_2:-2428195 | Msa0904660:CDS |
| TGGTGCTACATCTTGACTCT+TGG | 0.491042 | 6_2:+2427652 | None:intergenic |
| ACTCTTGGATCCATATTCAT+GGG | 0.506124 | 6_2:+2427667 | None:intergenic |
| CTTCACCATTTCTGGTGAGG+TGG | 0.514326 | 6_2:-2428019 | Msa0904660:CDS |
| CTCACCTTTCTTGGTACTTG+AGG | 0.516518 | 6_2:+2430698 | None:intergenic |
| TTTGAATCATAATCAGGTAA+AGG | 0.518116 | 6_2:+2427490 | None:intergenic |
| GAATGTCACTACTGATATCA+AGG | 0.523422 | 6_2:-2430637 | Msa0904660:CDS |
| ATAGTCTTGAGGCCAGGAGC+TGG | 0.527584 | 6_2:+2429727 | None:intergenic |
| ATGGTAGTACGAAGCATTCA+GGG | 0.530476 | 6_2:+2428227 | None:intergenic |
| GTTTGCTGTCAACCCAATGC+TGG | 0.533852 | 6_2:+2429527 | None:intergenic |
| AGTACTTGCATGACTATGCT+GGG | 0.535027 | 6_2:-2429557 | Msa0904660:CDS |
| CCGATGTCAGAGTAAAGACC+TGG | 0.535704 | 6_2:+2431967 | None:intergenic |
| GGAAATAATGTAGTTGCTCT+CGG | 0.543480 | 6_2:-2429477 | Msa0904660:CDS |
| TCAACAACCAACAATGTCAA+AGG | 0.549726 | 6_2:-2431992 | Msa0904660:exon |
| ATTCTTCACCATTTCTGGTG+AGG | 0.552957 | 6_2:-2428022 | Msa0904660:CDS |
| CTAAGAATAGTCTTGAGGCC+AGG | 0.561374 | 6_2:+2429721 | None:intergenic |
| CAACAACCAACAATGTCAAA+GGG | 0.564550 | 6_2:-2431991 | Msa0904660:exon |
| AAAGAAAACACACTCACACT+TGG | 0.565898 | 6_2:-2428144 | Msa0904660:CDS |
| CCAGGTCTTTACTCTGACAT+CGG | 0.570066 | 6_2:-2431967 | Msa0904660:CDS |
| ACTGCCTCAAGTACCAAGAA+AGG | 0.570898 | 6_2:-2430702 | Msa0904660:CDS |
| TTTGGCTCTCAAACCTTGAG+AGG | 0.571180 | 6_2:-2427956 | Msa0904660:exon |
| AAGCTTCGATTCAACAACTT+CGG | 0.572667 | 6_2:-2428087 | Msa0904660:CDS |
| TCGATTCAACAACTTCGGAC+TGG | 0.577522 | 6_2:-2428082 | Msa0904660:CDS |
| TAAAACAGCTGTTGGAGCTG+AGG | 0.577802 | 6_2:-2428187 | Msa0904660:CDS |
| AACAACTTCGGACTGGCAAG+CGG | 0.577860 | 6_2:-2428075 | Msa0904660:CDS |
| GCGGTCTCATCCAGCACGAG+TGG | 0.581180 | 6_2:-2428056 | Msa0904660:CDS |
| TTCTGGTGAGGTGGACACCA+AGG | 0.584182 | 6_2:-2428010 | Msa0904660:CDS |
| GTTGAGGTAGTCATTAGCAA+AGG | 0.591761 | 6_2:-2427917 | Msa0904660:three_prime_UTR |
| TGCTGTCAACCCAATGCTGG+CGG | 0.599470 | 6_2:+2429530 | None:intergenic |
| TAGCCACCATTGCATGACAC+TGG | 0.604924 | 6_2:+2427547 | None:intergenic |
| CATCCAGTGTCATGCAATGG+TGG | 0.611538 | 6_2:-2427550 | Msa0904660:three_prime_UTR |
| GTGTTCACAAGACTTAATGC+TGG | 0.612270 | 6_2:-2429423 | Msa0904660:CDS |
| CCAACAATGTCAAAGGGTCC+AGG | 0.613260 | 6_2:-2431985 | Msa0904660:exon |
| ACCTGAACTAAAGTCTGGAA+AGG | 0.619670 | 6_2:-2429683 | Msa0904660:intron |
| CTCTTGGATCCATATTCATG+GGG | 0.622127 | 6_2:+2427668 | None:intergenic |
| AGGCATTAATATCACAAAGG+AGG | 0.650482 | 6_2:+2427510 | None:intergenic |
| TGAAGCTAAGAATAGTCTTG+AGG | 0.655550 | 6_2:+2429716 | None:intergenic |
| TAAAGGCATTAATATCACAA+AGG | 0.673320 | 6_2:+2427507 | None:intergenic |
| TTTGTTATTATTGTGTTACG+TGG | 0.674331 | 6_2:-2427696 | Msa0904660:three_prime_UTR |
| CAAGATGTAGCACCAGTTTG+GGG | 0.680110 | 6_2:-2427644 | Msa0904660:three_prime_UTR |
| GGTCATCCAGTGTCATGCAA+TGG | 0.695116 | 6_2:-2427553 | Msa0904660:three_prime_UTR |
| AATAATGTAGTTGCTCTCGG+TGG | 0.754602 | 6_2:-2429474 | Msa0904660:CDS |
| TGTCACTACTGATATCAAGG+TGG | 0.758087 | 6_2:-2430634 | Msa0904660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATTGGATT+CGG | + | chr6_2:2427597-2427616 | None:intergenic | 10.0% |
| !!! | GAAAAATAAAAGATTTTTTT+GGG | - | chr6_2:2427885-2427904 | Msa0904660:three_prime_UTR | 10.0% |
| !! | TCTATATAATGATTAATAAT+TGG | - | chr6_2:2429655-2429674 | Msa0904660:intron | 10.0% |
| !!! | ATTTTTTATAGGATATAAAA+TGG | + | chr6_2:2431905-2431924 | None:intergenic | 10.0% |
| !!! | TTATTTGTTATTTGAGTAAT+TGG | - | chr6_2:2427838-2427857 | Msa0904660:three_prime_UTR | 15.0% |
| !!! | TATTTGTTATTTGAGTAATT+GGG | - | chr6_2:2427839-2427858 | Msa0904660:three_prime_UTR | 15.0% |
| !!! | GGAAAAATAAAAGATTTTTT+TGG | - | chr6_2:2427884-2427903 | Msa0904660:three_prime_UTR | 15.0% |
| !!! | TGTATTATTGATTATTATAG+TGG | - | chr6_2:2427917-2427936 | Msa0904660:three_prime_UTR | 15.0% |
| !!! | TTTTTCTTTTAATTTGTTGT+TGG | - | chr6_2:2428333-2428352 | Msa0904660:intron | 15.0% |
| !!! | TTTTCTTTTAATTTGTTGTT+GGG | - | chr6_2:2428334-2428353 | Msa0904660:intron | 15.0% |
| !!! | TGTTTATTGTTATTGTTATT+TGG | - | chr6_2:2428360-2428379 | Msa0904660:intron | 15.0% |
| !! | TTATAAAACAATAAAAACTG+TGG | + | chr6_2:2429005-2429024 | None:intergenic | 15.0% |
| !! | CAAATAAAAAATAATACACA+AGG | + | chr6_2:2429567-2429586 | None:intergenic | 15.0% |
| !! | AATAAAGATACAAATAGAAT+GGG | + | chr6_2:2429688-2429707 | None:intergenic | 15.0% |
| !! | AAATAAAGATACAAATAGAA+TGG | + | chr6_2:2429689-2429708 | None:intergenic | 15.0% |
| !!! | TAAATTTTAGATATTCTACA+GGG | + | chr6_2:2431102-2431121 | None:intergenic | 15.0% |
| !!! | TTAAATTTTAGATATTCTAC+AGG | + | chr6_2:2431103-2431122 | None:intergenic | 15.0% |
| !! | AAACTGATTAAAATTTGTAT+GGG | - | chr6_2:2431214-2431233 | Msa0904660:intron | 15.0% |
| !!! | AGAAATTTTGACTAATATTG+TGG | - | chr6_2:2427634-2427653 | Msa0904660:three_prime_UTR | 20.0% |
| !!! | TTTTAGGATGATTGTTTTAT+TGG | - | chr6_2:2427863-2427882 | Msa0904660:three_prime_UTR | 20.0% |
| !!! | AAATAAAAGATTTTTTTGGG+TGG | - | chr6_2:2427888-2427907 | Msa0904660:three_prime_UTR | 20.0% |
| !! | TAAGCTAAAAAATAAGTCAA+TGG | - | chr6_2:2428163-2428182 | Msa0904660:CDS | 20.0% |
| !! | GATAAAAAAAATCCAACAAT+TGG | + | chr6_2:2428219-2428238 | None:intergenic | 20.0% |
| !!! | TTTCTTTTAATTTGTTGTTG+GGG | - | chr6_2:2428335-2428354 | Msa0904660:intron | 20.0% |
| !! | AAATGTAGAGATTAATGATT+TGG | - | chr6_2:2428404-2428423 | Msa0904660:intron | 20.0% |
| !!! | TAATGATTTGGATTGAAATA+TGG | - | chr6_2:2428416-2428435 | Msa0904660:intron | 20.0% |
| !!! | AATGATTTGGATTGAAATAT+GGG | - | chr6_2:2428417-2428436 | Msa0904660:intron | 20.0% |
| !!! | AATTTGAAATTTAAGCTAGA+AGG | - | chr6_2:2429152-2429171 | Msa0904660:intron | 20.0% |
| !! | AGTTATAGTGCAATAAATAT+TGG | + | chr6_2:2429468-2429487 | None:intergenic | 20.0% |
| !!! | ATTGCACTATAACTATTTTT+AGG | - | chr6_2:2429474-2429493 | Msa0904660:CDS | 20.0% |
| !! | TTGTTTATCAAATTAGTGAA+TGG | + | chr6_2:2429897-2429916 | None:intergenic | 20.0% |
| !! | AAAAAAAAACACTGATAAAC+AGG | + | chr6_2:2430811-2430830 | None:intergenic | 20.0% |
| !!! | TAAAAGTGAAGTTTTATTGA+AGG | + | chr6_2:2430836-2430855 | None:intergenic | 20.0% |
| !!! | AAAATGAAATTCACTTTTGA+AGG | + | chr6_2:2431050-2431069 | None:intergenic | 20.0% |
| !!! | AAATTTTAGATATTCTACAG+GGG | + | chr6_2:2431101-2431120 | None:intergenic | 20.0% |
| !! | CAAAATCACTTTATTCTAAT+CGG | + | chr6_2:2431147-2431166 | None:intergenic | 20.0% |
| !! | GAAACTGATTAAAATTTGTA+TGG | - | chr6_2:2431213-2431232 | Msa0904660:intron | 20.0% |
| !! | AACTGATTAAAATTTGTATG+GGG | - | chr6_2:2431215-2431234 | Msa0904660:intron | 20.0% |
| !!! | CTATGATGAGAATTTTTTAT+AGG | + | chr6_2:2431916-2431935 | None:intergenic | 20.0% |
| !! | CTATAAAAAATTCTCATCAT+AGG | - | chr6_2:2431914-2431933 | Msa0904660:intron | 20.0% |
| !! | TCATCATAGGTAAATTAATA+TGG | - | chr6_2:2431927-2431946 | Msa0904660:intron | 20.0% |
| !!! | TTCAAATGTAGTATTCTTTT+TGG | - | chr6_2:2432028-2432047 | Msa0904660:five_prime_UTR | 20.0% |
| !! | ATTTGAGTAATTGGGTTTTT+AGG | - | chr6_2:2427847-2427866 | Msa0904660:three_prime_UTR | 25.0% |
| ! | AAAAATCCAACAATTGGAAA+GGG | + | chr6_2:2428213-2428232 | None:intergenic | 25.0% |
| ! | AAAAAATCCAACAATTGGAA+AGG | + | chr6_2:2428214-2428233 | None:intergenic | 25.0% |
| !!! | TGGATTTTTTTTATCTGAGT+TGG | - | chr6_2:2428224-2428243 | Msa0904660:CDS | 25.0% |
| !!! | GGATTTTTTTTATCTGAGTT+GGG | - | chr6_2:2428225-2428244 | Msa0904660:CDS | 25.0% |
| ! | CTTGATTGTATTCAATTTGT+GGG | - | chr6_2:2428516-2428535 | Msa0904660:intron | 25.0% |
| !! | CCTGAATTAATTTGAGAAAA+TGG | + | chr6_2:2428731-2428750 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATTAATTC+AGG | - | chr6_2:2428728-2428747 | Msa0904660:intron | 25.0% |
| !!! | TTTTTTATTCACTGTTCTGT+TGG | - | chr6_2:2428943-2428962 | Msa0904660:intron | 25.0% |
| ! | ATTAAGTAGTTAAACTAGCA+CGG | + | chr6_2:2429135-2429154 | None:intergenic | 25.0% |
| ! | CATCAATTAGTAAATGATGT+TGG | + | chr6_2:2429217-2429236 | None:intergenic | 25.0% |
| ! | CATCATTTACTAATTGATGA+TGG | - | chr6_2:2429218-2429237 | Msa0904660:intron | 25.0% |
| ! | ATTTGTAGCCAGTTAATAAT+TGG | - | chr6_2:2429582-2429601 | Msa0904660:intron | 25.0% |
| ! | TTACATTGCCAATTATTAAC+TGG | + | chr6_2:2429593-2429612 | None:intergenic | 25.0% |
| ! | TCTACTTACTTAAATAGCAT+TGG | + | chr6_2:2430434-2430453 | None:intergenic | 25.0% |
| ! | TCGTACAATTACAAATGAAT+TGG | - | chr6_2:2430596-2430615 | Msa0904660:intron | 25.0% |
| !!! | TTCATCATTTTTTACCTTGA+AGG | - | chr6_2:2430863-2430882 | Msa0904660:intron | 25.0% |
| ! | TCAATAAAATTCTCTTGCTT+AGG | - | chr6_2:2431181-2431200 | Msa0904660:intron | 25.0% |
| ! | TTAAAATTTGTATGGGGATA+TGG | - | chr6_2:2431221-2431240 | Msa0904660:intron | 25.0% |
| !!! | AATTTTGAGCAAATTTGTTG+AGG | - | chr6_2:2431568-2431587 | Msa0904660:intron | 25.0% |
| !! | TTTTCTATCAAGACTGAATT+TGG | - | chr6_2:2431612-2431631 | Msa0904660:intron | 25.0% |
| !!! | TTTGTTATTATTGTGTTACG+TGG | - | chr6_2:2431805-2431824 | Msa0904660:CDS | 25.0% |
| !!! | TAAAGGCATTAATATCACAA+AGG | + | chr6_2:2431997-2432016 | None:intergenic | 25.0% |
| ! | TTTGAATCATAATCAGGTAA+AGG | + | chr6_2:2432014-2432033 | None:intergenic | 25.0% |
| ! | ACTACATTTGAATCATAATC+AGG | + | chr6_2:2432020-2432039 | None:intergenic | 25.0% |
| !!! | AATTAGGGTTTTGAAGTGAA+CGG | + | chr6_2:2427457-2427476 | None:intergenic | 30.0% |
| AAGAAGAAGAAGAGGAATTA+GGG | + | chr6_2:2427472-2427491 | None:intergenic | 30.0% | |
| TATTGCAGATCTTCTTTACA+AGG | - | chr6_2:2427672-2427691 | Msa0904660:three_prime_UTR | 30.0% | |
| AAAAAACTCACAATTCCAGT+AGG | + | chr6_2:2427739-2427758 | None:intergenic | 30.0% | |
| TATTATAGTGGTAGCAATGT+CGG | - | chr6_2:2427929-2427948 | Msa0904660:three_prime_UTR | 30.0% | |
| TTATGTTCATAAGCTTGTCA+AGG | - | chr6_2:2428037-2428056 | Msa0904660:CDS | 30.0% | |
| !!! | TTTTTTCCCTTTCCAATTGT+TGG | - | chr6_2:2428204-2428223 | Msa0904660:CDS | 30.0% |
| ! | AGTTGGGATGATTTTTGTAT+TGG | - | chr6_2:2428241-2428260 | Msa0904660:CDS | 30.0% |
| AAGATTTGTAGATGCATGAA+AGG | - | chr6_2:2428264-2428283 | Msa0904660:intron | 30.0% | |
| !!! | TGTTGTGATTTTTTGTGAAG+TGG | - | chr6_2:2428294-2428313 | Msa0904660:intron | 30.0% |
| TGGGTTATGATAGAACATTA+TGG | - | chr6_2:2428436-2428455 | Msa0904660:intron | 30.0% | |
| GCTTGATTGTATTCAATTTG+TGG | - | chr6_2:2428515-2428534 | Msa0904660:intron | 30.0% | |
| GACATGATACTTTAGATTGA+AGG | - | chr6_2:2428629-2428648 | Msa0904660:intron | 30.0% | |
| GTAAGTTCATGATTCTTTCT+CGG | - | chr6_2:2428904-2428923 | Msa0904660:intron | 30.0% | |
| !!! | GTTTTCTGTTTAACTTGTCA+TGG | - | chr6_2:2428965-2428984 | Msa0904660:intron | 30.0% |
| !! | TGCGTATTTGTTATACAGTT+GGG | - | chr6_2:2429076-2429095 | Msa0904660:intron | 30.0% |
| !! | TATTTGTTATACAGTTGGGT+TGG | - | chr6_2:2429080-2429099 | Msa0904660:intron | 30.0% |
| !! | ATTTGTTATACAGTTGGGTT+GGG | - | chr6_2:2429081-2429100 | Msa0904660:intron | 30.0% |
| GGTAACCTAATCAAAATTGA+GGG | + | chr6_2:2429113-2429132 | None:intergenic | 30.0% | |
| TTAAGTAGTTAAACTAGCAC+GGG | + | chr6_2:2429134-2429153 | None:intergenic | 30.0% | |
| ! | TCTATTTTACATCTGCCATA+TGG | + | chr6_2:2429179-2429198 | None:intergenic | 30.0% |
| AAAGTATGTCACTGCAAAAT+TGG | - | chr6_2:2429269-2429288 | Msa0904660:intron | 30.0% | |
| GAGAGACATACTATAAAGTA+GGG | + | chr6_2:2429350-2429369 | None:intergenic | 30.0% | |
| AGAGAGACATACTATAAAGT+AGG | + | chr6_2:2429351-2429370 | None:intergenic | 30.0% | |
| ATAATTGGCAATGTAAAGCA+CGG | - | chr6_2:2429597-2429616 | Msa0904660:intron | 30.0% | |
| AACAAATTACCGTATGAAAC+AGG | - | chr6_2:2429912-2429931 | Msa0904660:intron | 30.0% | |
| TGTTAAACAACAACACATGT+TGG | - | chr6_2:2430493-2430512 | Msa0904660:intron | 30.0% | |
| AAACAGACAACTCAGAAAAT+AGG | + | chr6_2:2430714-2430733 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTACCTTGAAGGA+CGG | - | chr6_2:2430867-2430886 | Msa0904660:intron | 30.0% |
| !! | CTTCATATTTTAAGCAGCTT+TGG | + | chr6_2:2430977-2430996 | None:intergenic | 30.0% |
| TATTCTAATCGGTAACAAAC+AGG | + | chr6_2:2431136-2431155 | None:intergenic | 30.0% | |
| ! | GAAATGGTGAAGAATGATTT+TGG | + | chr6_2:2431474-2431493 | None:intergenic | 30.0% |
| AAATCATTCTTCACCATTTC+TGG | - | chr6_2:2431474-2431493 | Msa0904660:intron | 30.0% | |
| !!! | ACTGAATTTGGTGTTTTTTG+AGG | - | chr6_2:2431624-2431643 | Msa0904660:intron | 30.0% |
| !!! | AATTTGGTGTTTTTTGAGGT+TGG | - | chr6_2:2431628-2431647 | Msa0904660:intron | 30.0% |
| !! | TTTGAGGTTGGTTCTATTAT+TGG | - | chr6_2:2431640-2431659 | Msa0904660:intron | 30.0% |
| ! | TGGGGCATTATTCAATAATT+TGG | - | chr6_2:2431875-2431894 | Msa0904660:intron | 30.0% |
| ! | GGGGCATTATTCAATAATTT+GGG | - | chr6_2:2431876-2431895 | Msa0904660:intron | 30.0% |
| GAAGAAGAAGAAGAGGAATT+AGG | + | chr6_2:2427473-2427492 | None:intergenic | 35.0% | |
| GTTGGTTGTTGAGAGAAAAT+TGG | + | chr6_2:2427501-2427520 | None:intergenic | 35.0% | |
| TCAACAACCAACAATGTCAA+AGG | - | chr6_2:2427509-2427528 | Msa0904660:three_prime_UTR | 35.0% | |
| CAACAACCAACAATGTCAAA+GGG | - | chr6_2:2427510-2427529 | Msa0904660:three_prime_UTR | 35.0% | |
| TGTGGTGTAAGTGAGATTAT+AGG | - | chr6_2:2427953-2427972 | Msa0904660:exon | 35.0% | |
| AGTGAGATTATAGGTCTGTT+TGG | - | chr6_2:2427962-2427981 | Msa0904660:CDS | 35.0% | |
| GATTATAGGTCTGTTTGGAT+CGG | - | chr6_2:2427967-2427986 | Msa0904660:CDS | 35.0% | |
| ACAACATTGCTATCACTTAG+GGG | + | chr6_2:2428485-2428504 | None:intergenic | 35.0% | |
| CACAACATTGCTATCACTTA+GGG | + | chr6_2:2428486-2428505 | None:intergenic | 35.0% | |
| TCAATTTGTGGGTGTGTTTA+TGG | - | chr6_2:2428527-2428546 | Msa0904660:intron | 35.0% | |
| ! | ATGCTTGATTGATAGCAATG+CGG | - | chr6_2:2428581-2428600 | Msa0904660:intron | 35.0% |
| CATAAACAGCCACAAAAAGA+GGG | + | chr6_2:2428770-2428789 | None:intergenic | 35.0% | |
| CAAAAAAAGCTCACCTTTCT+TGG | + | chr6_2:2428815-2428834 | None:intergenic | 35.0% | |
| !!! | CAAGAAAGGTGAGCTTTTTT+TGG | - | chr6_2:2428813-2428832 | Msa0904660:intron | 35.0% |
| GAATGTCACTACTGATATCA+AGG | - | chr6_2:2428864-2428883 | Msa0904660:intron | 35.0% | |
| !! | GTGCGTATTTGTTATACAGT+TGG | - | chr6_2:2429075-2429094 | Msa0904660:intron | 35.0% |
| GGGTAACCTAATCAAAATTG+AGG | + | chr6_2:2429114-2429133 | None:intergenic | 35.0% | |
| TTTAAGCTAGAAGGTCCATA+TGG | - | chr6_2:2429161-2429180 | Msa0904660:intron | 35.0% | |
| ATGTCACTGCAAAATTGGAA+TGG | - | chr6_2:2429274-2429293 | Msa0904660:intron | 35.0% | |
| ACTGCAAAATTGGAATGGAA+AGG | - | chr6_2:2429279-2429298 | Msa0904660:intron | 35.0% | |
| ! | TGAAGCTAAGAATAGTCTTG+AGG | + | chr6_2:2429788-2429807 | None:intergenic | 35.0% |
| TCAAGACTATTCTTAGCTTC+AGG | - | chr6_2:2429787-2429806 | Msa0904660:intron | 35.0% | |
| TAGATTCTTTCAGTCTCCAA+TGG | - | chr6_2:2429865-2429884 | Msa0904660:intron | 35.0% | |
| TCCAATAACACCAGAAAAGT+TGG | + | chr6_2:2430007-2430026 | None:intergenic | 35.0% | |
| GGAAATAATGTAGTTGCTCT+CGG | - | chr6_2:2430024-2430043 | Msa0904660:intron | 35.0% | |
| CTTTCTTATGACACCAAAAC+TGG | - | chr6_2:2430054-2430073 | Msa0904660:intron | 35.0% | |
| TACATGAGTCAATGTTGTGT+CGG | - | chr6_2:2430330-2430349 | Msa0904660:intron | 35.0% | |
| ! | GTGCGTTTAATCTGAAATGT+TGG | - | chr6_2:2430525-2430544 | Msa0904660:intron | 35.0% |
| ! | TAGCATTTTGTGAACTTGAG+AGG | - | chr6_2:2430653-2430672 | Msa0904660:CDS | 35.0% |
| ATAAACACACCTAATCCCAT+AGG | - | chr6_2:2430948-2430967 | Msa0904660:intron | 35.0% | |
| ! | TAGTAATGGGATTGACTACA+TGG | + | chr6_2:2431296-2431315 | None:intergenic | 35.0% |
| !!! | CCAACAGCTGTTTTAGTAAT+GGG | + | chr6_2:2431309-2431328 | None:intergenic | 35.0% |
| !!! | TCCAACAGCTGTTTTAGTAA+TGG | + | chr6_2:2431310-2431329 | None:intergenic | 35.0% |
| ! | AAGTGTGAGTGTGTTTTCTT+TGG | + | chr6_2:2431358-2431377 | None:intergenic | 35.0% |
| AAAGAAAACACACTCACACT+TGG | - | chr6_2:2431357-2431376 | Msa0904660:intron | 35.0% | |
| AAGCTTCGATTCAACAACTT+CGG | - | chr6_2:2431414-2431433 | Msa0904660:intron | 35.0% | |
| AATTCTTGCACTCTTCTCAA+TGG | + | chr6_2:2431517-2431536 | None:intergenic | 35.0% | |
| ! | ATTGAGAAGAGTGCAAGAAT+TGG | - | chr6_2:2431516-2431535 | Msa0904660:intron | 35.0% |
| TGCAAGAATTGGAATAGCTT+TGG | - | chr6_2:2431527-2431546 | Msa0904660:intron | 35.0% | |
| TTTGCTCAAAATTCCTCTCA+AGG | + | chr6_2:2431561-2431580 | None:intergenic | 35.0% | |
| ACTCTTGGATCCATATTCAT+GGG | + | chr6_2:2431837-2431856 | None:intergenic | 35.0% | |
| TATTGAATAATGCCCCAAAC+TGG | + | chr6_2:2431872-2431891 | None:intergenic | 35.0% | |
| AGGCATTAATATCACAAAGG+AGG | + | chr6_2:2431994-2432013 | None:intergenic | 35.0% | |
| GGAAGAAGAAGAAGAAGAAG+AGG | + | chr6_2:2427480-2427499 | None:intergenic | 40.0% | |
| AAGTAGTGAGAGTGAACTTC+TGG | + | chr6_2:2427711-2427730 | None:intergenic | 40.0% | |
| CTCACTACTTATTCACCTAC+TGG | - | chr6_2:2427721-2427740 | Msa0904660:three_prime_UTR | 40.0% | |
| GCACAACATTGCTATCACTT+AGG | + | chr6_2:2428487-2428506 | None:intergenic | 40.0% | |
| GTGTTTATGGTTTGACCAGT+TGG | - | chr6_2:2428540-2428559 | Msa0904660:intron | 40.0% | |
| CAGTTCATCACAAAACCAAC+TGG | + | chr6_2:2428558-2428577 | None:intergenic | 40.0% | |
| ! | CTTTAGATTGAAGGTGTGTC+TGG | - | chr6_2:2428638-2428657 | Msa0904660:intron | 40.0% |
| ! | AATTCAGGCTTTGACTCCTT+TGG | - | chr6_2:2428743-2428762 | Msa0904660:intron | 40.0% |
| GCATAAACAGCCACAAAAAG+AGG | + | chr6_2:2428771-2428790 | None:intergenic | 40.0% | |
| ! | CTTTTTGTGGCTGTTTATGC+AGG | - | chr6_2:2428771-2428790 | Msa0904660:intron | 40.0% |
| TGTCACTACTGATATCAAGG+TGG | - | chr6_2:2428867-2428886 | Msa0904660:intron | 40.0% | |
| TTCATGATTCTTTCTCGGCT+GGG | - | chr6_2:2428909-2428928 | Msa0904660:intron | 40.0% | |
| CCTAATCAAAATTGAGGGAG+TGG | + | chr6_2:2429108-2429127 | None:intergenic | 40.0% | |
| !!! | CCACTCCCTCAATTTTGATT+AGG | - | chr6_2:2429105-2429124 | Msa0904660:intron | 40.0% |
| ! | AAATTGGAATGGAAAGGCGT+TGG | - | chr6_2:2429285-2429304 | Msa0904660:intron | 40.0% |
| AGATGCAAACAGTCGAGATA+AGG | - | chr6_2:2429505-2429524 | Msa0904660:CDS | 40.0% | |
| GATGCAAACAGTCGAGATAA+GGG | - | chr6_2:2429506-2429525 | Msa0904660:CDS | 40.0% | |
| ATGCAAACAGTCGAGATAAG+GGG | - | chr6_2:2429507-2429526 | Msa0904660:CDS | 40.0% | |
| GATCGACAGATATTGATGTG+TGG | + | chr6_2:2429637-2429656 | None:intergenic | 40.0% | |
| ACCTGAACTAAAGTCTGGAA+AGG | - | chr6_2:2429818-2429837 | Msa0904660:intron | 40.0% | |
| ! | ACCTTTCCAGACTTTAGTTC+AGG | + | chr6_2:2429822-2429841 | None:intergenic | 40.0% |
| TAGTGAATGGTGCTTTCCAT+TGG | + | chr6_2:2429884-2429903 | None:intergenic | 40.0% | |
| GAACTTCAGCCTGTTTCATA+CGG | + | chr6_2:2429924-2429943 | None:intergenic | 40.0% | |
| AGTACTTGCATGACTATGCT+GGG | - | chr6_2:2429944-2429963 | Msa0904660:intron | 40.0% | |
| ! | AACCCAATTGCCAACTTTTC+TGG | - | chr6_2:2429994-2430013 | Msa0904660:intron | 40.0% |
| CACCAGAAAAGTTGGCAATT+GGG | + | chr6_2:2429999-2430018 | None:intergenic | 40.0% | |
| ACACCAGAAAAGTTGGCAAT+TGG | + | chr6_2:2430000-2430019 | None:intergenic | 40.0% | |
| !!! | GCCAACTTTTCTGGTGTTAT+TGG | - | chr6_2:2430003-2430022 | Msa0904660:intron | 40.0% |
| AATAATGTAGTTGCTCTCGG+TGG | - | chr6_2:2430027-2430046 | Msa0904660:intron | 40.0% | |
| GTGTTCACAAGACTTAATGC+TGG | - | chr6_2:2430078-2430097 | Msa0904660:intron | 40.0% | |
| CGAAGCAATCAAATCGTCTT+TGG | + | chr6_2:2430115-2430134 | None:intergenic | 40.0% | |
| ACATGTAAATGCTAGTGTCG+TGG | + | chr6_2:2430406-2430425 | None:intergenic | 40.0% | |
| TACACGAGTCAATGTTGTGT+CGG | - | chr6_2:2430470-2430489 | Msa0904660:intron | 40.0% | |
| CAACCTTACCTAGTTAGATG+TGG | - | chr6_2:2430743-2430762 | Msa0904660:intron | 40.0% | |
| ATGCCACATCTAACTAGGTA+AGG | + | chr6_2:2430749-2430768 | None:intergenic | 40.0% | |
| CTGTAATGCCACATCTAACT+AGG | + | chr6_2:2430754-2430773 | None:intergenic | 40.0% | |
| ! | ATGGTAGTACGAAGCATTCA+GGG | + | chr6_2:2431277-2431296 | None:intergenic | 40.0% |
| CCCATTACTAAAACAGCTGT+TGG | - | chr6_2:2431306-2431325 | Msa0904660:intron | 40.0% | |
| !! | ATTCTTCACCATTTCTGGTG+AGG | - | chr6_2:2431479-2431498 | Msa0904660:intron | 40.0% |
| GTTGAGGTAGTCATTAGCAA+AGG | - | chr6_2:2431584-2431603 | Msa0904660:intron | 40.0% | |
| CTCTTGGATCCATATTCATG+GGG | + | chr6_2:2431836-2431855 | None:intergenic | 40.0% | |
| GACTCTTGGATCCATATTCA+TGG | + | chr6_2:2431838-2431857 | None:intergenic | 40.0% | |
| TCAAGATGTAGCACCAGTTT+GGG | - | chr6_2:2431856-2431875 | Msa0904660:intron | 40.0% | |
| CCAGGTCTTTACTCTGACAT+CGG | - | chr6_2:2427534-2427553 | Msa0904660:three_prime_UTR | 45.0% | |
| GTGATAGCAATGTTGTGCTG+TGG | - | chr6_2:2428489-2428508 | Msa0904660:intron | 45.0% | |
| ! | TAGATTGAAGGTGTGTCTGG+TGG | - | chr6_2:2428641-2428660 | Msa0904660:intron | 45.0% |
| ! | TCCTTTGGACCCTCTTTTTG+TGG | - | chr6_2:2428758-2428777 | Msa0904660:intron | 45.0% |
| ACTGCCTCAAGTACCAAGAA+AGG | - | chr6_2:2428799-2428818 | Msa0904660:intron | 45.0% | |
| CTCACCTTTCTTGGTACTTG+AGG | + | chr6_2:2428806-2428825 | None:intergenic | 45.0% | |
| GTTCATGATTCTTTCTCGGC+TGG | - | chr6_2:2428908-2428927 | Msa0904660:intron | 45.0% | |
| GCTTTACTACCGTTGCAAAG+CGG | - | chr6_2:2429029-2429048 | Msa0904660:intron | 45.0% | |
| TCGAGATAAGGGGCAACTTT+AGG | - | chr6_2:2429517-2429536 | Msa0904660:CDS | 45.0% | |
| ! | CTAAGAATAGTCTTGAGGCC+AGG | + | chr6_2:2429783-2429802 | None:intergenic | 45.0% |
| ! | CCAGACTTTAGTTCAGGTTC+AGG | + | chr6_2:2429816-2429835 | None:intergenic | 45.0% |
| CCTGAACCTGAACTAAAGTC+TGG | - | chr6_2:2429813-2429832 | Msa0904660:intron | 45.0% | |
| CAGTACTTGCATGACTATGC+TGG | - | chr6_2:2429943-2429962 | Msa0904660:intron | 45.0% | |
| ! | TCTTGTGAACACGCCAGTTT+TGG | + | chr6_2:2430070-2430089 | None:intergenic | 45.0% |
| TAGTGTCGTGATCAGTGTCA+GGG | + | chr6_2:2430254-2430273 | None:intergenic | 45.0% | |
| TTAGTGTCGTGATCAGTGTC+AGG | + | chr6_2:2430255-2430274 | None:intergenic | 45.0% | |
| ! | AGTCAATGTTGTGTCGGTGT+CGG | - | chr6_2:2430336-2430355 | Msa0904660:intron | 45.0% |
| TGTCGGACAACAACACATGT+TGG | - | chr6_2:2430353-2430372 | Msa0904660:intron | 45.0% | |
| ! | TCTGAAATGTTGGTGCGTTG+TGG | - | chr6_2:2430535-2430554 | Msa0904660:intron | 45.0% |
| TTGTCAGAATCCGTCCTTCA+AGG | + | chr6_2:2430880-2430899 | None:intergenic | 45.0% | |
| CTTTGGACACCTATGGGATT+AGG | + | chr6_2:2430960-2430979 | None:intergenic | 45.0% | |
| !! | AAGCAGCTTTGGACACCTAT+GGG | + | chr6_2:2430966-2430985 | None:intergenic | 45.0% |
| !! | TAAGCAGCTTTGGACACCTA+TGG | + | chr6_2:2430967-2430986 | None:intergenic | 45.0% |
| GGGATATGGTAAATGCATGC+AGG | - | chr6_2:2431235-2431254 | Msa0904660:intron | 45.0% | |
| ! | CATGGTAGTACGAAGCATTC+AGG | + | chr6_2:2431278-2431297 | None:intergenic | 45.0% |
| TAAAACAGCTGTTGGAGCTG+AGG | - | chr6_2:2431314-2431333 | Msa0904660:intron | 45.0% | |
| TCGATTCAACAACTTCGGAC+TGG | - | chr6_2:2431419-2431438 | Msa0904660:intron | 45.0% | |
| !! | TTTGGCTCTCAAACCTTGAG+AGG | - | chr6_2:2431545-2431564 | Msa0904660:intron | 45.0% |
| !! | TGGTGCTACATCTTGACTCT+TGG | + | chr6_2:2431852-2431871 | None:intergenic | 45.0% |
| GTCAAGATGTAGCACCAGTT+TGG | - | chr6_2:2431855-2431874 | Msa0904660:intron | 45.0% | |
| CAAGATGTAGCACCAGTTTG+GGG | - | chr6_2:2431857-2431876 | Msa0904660:intron | 45.0% | |
| !! | TCAAAAAAAAAAAAAAAAAT+TGG | + | chr6_2:2427603-2427622 | None:intergenic | 5.0% |
| CCTGGACCCTTTGACATTGT+TGG | + | chr6_2:2427519-2427538 | None:intergenic | 50.0% | |
| CCAACAATGTCAAAGGGTCC+AGG | - | chr6_2:2427516-2427535 | Msa0904660:three_prime_UTR | 50.0% | |
| CCGATGTCAGAGTAAAGACC+TGG | + | chr6_2:2427537-2427556 | None:intergenic | 50.0% | |
| GACATCGGCAAAAAAGCCAG+AGG | - | chr6_2:2427549-2427568 | Msa0904660:three_prime_UTR | 50.0% | |
| !! | AGTGAGAAAGAGGGTACCTC+TGG | + | chr6_2:2427568-2427587 | None:intergenic | 50.0% |
| CGGAGAGAGAGTGAGAAAGA+GGG | + | chr6_2:2427577-2427596 | None:intergenic | 50.0% | |
| TCGGAGAGAGAGTGAGAAAG+AGG | + | chr6_2:2427578-2427597 | None:intergenic | 50.0% | |
| ! | AGTGGTAGCAATGTCGGTTG+TGG | - | chr6_2:2427935-2427954 | Msa0904660:three_prime_UTR | 50.0% |
| TCACTTAGGGGTCAGCTACA+TGG | + | chr6_2:2428473-2428492 | None:intergenic | 50.0% | |
| GCCACAAAAAGAGGGTCCAA+AGG | + | chr6_2:2428762-2428781 | None:intergenic | 50.0% | |
| ! | ACCGTTGCAAAGCGGCTTTT+TGG | - | chr6_2:2429037-2429056 | Msa0904660:intron | 50.0% |
| ! | GCCAAAAAGCCGCTTTGCAA+CGG | + | chr6_2:2429041-2429060 | None:intergenic | 50.0% |
| ACTGTTAATGAGCCAGCTCC+TGG | - | chr6_2:2429762-2429781 | Msa0904660:intron | 50.0% | |
| !! | GTTTGCTGTCAACCCAATGC+TGG | + | chr6_2:2429977-2429996 | None:intergenic | 50.0% |
| TAGTGTCGTGGTCAGTGTCA+TGG | + | chr6_2:2430394-2430413 | None:intergenic | 50.0% | |
| TTGGTGCGTTGTGGTAGCTT+TGG | - | chr6_2:2430544-2430563 | Msa0904660:intron | 50.0% | |
| !! | AACAACTTCGGACTGGCAAG+CGG | - | chr6_2:2431426-2431445 | Msa0904660:intron | 50.0% |
| !! | CTTCACCATTTCTGGTGAGG+TGG | - | chr6_2:2431482-2431501 | Msa0904660:intron | 50.0% |
| TGCACTCTTCTCAATGGCCT+TGG | + | chr6_2:2431511-2431530 | None:intergenic | 50.0% | |
| GTGGTTGTGCCCCATGAATA+TGG | - | chr6_2:2431824-2431843 | Msa0904660:CDS | 50.0% | |
| GGTCATCCAGTGTCATGCAA+TGG | - | chr6_2:2431948-2431967 | Msa0904660:intron | 50.0% | |
| CATCCAGTGTCATGCAATGG+TGG | - | chr6_2:2431951-2431970 | Msa0904660:intron | 50.0% | |
| TAGCCACCATTGCATGACAC+TGG | + | chr6_2:2431957-2431976 | None:intergenic | 50.0% | |
| ! | ATAGTCTTGAGGCCAGGAGC+TGG | + | chr6_2:2429777-2429796 | None:intergenic | 55.0% |
| CTGGGATTTCCGCCAGCATT+GGG | - | chr6_2:2429962-2429981 | Msa0904660:intron | 55.0% | |
| TGCTGTCAACCCAATGCTGG+CGG | + | chr6_2:2429974-2429993 | None:intergenic | 55.0% | |
| ! | ATTTTGGACGCCACTCGTGC+TGG | + | chr6_2:2431458-2431477 | None:intergenic | 55.0% |
| GGTGTCCACCTCACCAGAAA+TGG | + | chr6_2:2431490-2431509 | None:intergenic | 55.0% | |
| TTCTGGTGAGGTGGACACCA+AGG | - | chr6_2:2431491-2431510 | Msa0904660:intron | 55.0% | |
| GCTGGGATTTCCGCCAGCAT+TGG | - | chr6_2:2429961-2429980 | Msa0904660:intron | 60.0% | |
| GCGGTCTCATCCAGCACGAG+TGG | - | chr6_2:2431445-2431464 | Msa0904660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 2427449 | 2432074 | 2427449 | ID=Msa0904660;Name=Msa0904660 |
| chr6_2 | mRNA | 2427449 | 2432074 | 2427449 | ID=Msa0904660-mRNA-1;Parent=Msa0904660;Name=Msa0904660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=73|1|1|1|0.83|0.71|7|482|278 |
| chr6_2 | exon | 2427449 | 2427587 | 2427449 | ID=Msa0904660-mRNA-1:exon:814;Parent=Msa0904660-mRNA-1 |
| chr6_2 | exon | 2427617 | 2428266 | 2427617 | ID=Msa0904660-mRNA-1:exon:813;Parent=Msa0904660-mRNA-1 |
| chr6_2 | exon | 2429381 | 2429589 | 2429381 | ID=Msa0904660-mRNA-1:exon:812;Parent=Msa0904660-mRNA-1 |
| chr6_2 | exon | 2429684 | 2429776 | 2429684 | ID=Msa0904660-mRNA-1:exon:811;Parent=Msa0904660-mRNA-1 |
| chr6_2 | exon | 2430620 | 2430730 | 2430620 | ID=Msa0904660-mRNA-1:exon:810;Parent=Msa0904660-mRNA-1 |
| chr6_2 | exon | 2431776 | 2431843 | 2431776 | ID=Msa0904660-mRNA-1:exon:809;Parent=Msa0904660-mRNA-1 |
| chr6_2 | exon | 2431953 | 2432074 | 2431953 | ID=Msa0904660-mRNA-1:exon:808;Parent=Msa0904660-mRNA-1 |
| chr6_2 | five_prime_UTR | 2432002 | 2432074 | 2432002 | ID=Msa0904660-mRNA-1:five_prime_utr;Parent=Msa0904660-mRNA-1 |
| chr6_2 | CDS | 2431953 | 2432001 | 2431953 | ID=Msa0904660-mRNA-1:cds;Parent=Msa0904660-mRNA-1 |
| chr6_2 | CDS | 2431776 | 2431843 | 2431776 | ID=Msa0904660-mRNA-1:cds;Parent=Msa0904660-mRNA-1 |
| chr6_2 | CDS | 2430620 | 2430730 | 2430620 | ID=Msa0904660-mRNA-1:cds;Parent=Msa0904660-mRNA-1 |
| chr6_2 | CDS | 2429684 | 2429776 | 2429684 | ID=Msa0904660-mRNA-1:cds;Parent=Msa0904660-mRNA-1 |
| chr6_2 | CDS | 2429381 | 2429589 | 2429381 | ID=Msa0904660-mRNA-1:cds;Parent=Msa0904660-mRNA-1 |
| chr6_2 | CDS | 2427960 | 2428266 | 2427960 | ID=Msa0904660-mRNA-1:cds;Parent=Msa0904660-mRNA-1 |
| chr6_2 | three_prime_UTR | 2427617 | 2427959 | 2427617 | ID=Msa0904660-mRNA-1:three_prime_utr;Parent=Msa0904660-mRNA-1 |
| chr6_2 | three_prime_UTR | 2427449 | 2427587 | 2427449 | ID=Msa0904660-mRNA-1:three_prime_utr;Parent=Msa0904660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
