Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607610 | XP_003607364.1 | 97.449 | 392 | 3 | 5 | 1 | 389 | 1 | 388 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607610 | sp|Q94CJ5|RER4_ARATH | 76.512 | 281 | 66 | 0 | 109 | 389 | 103 | 383 | 2.39e-163 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037410 | Msa0607610 | 0.805079 | 1.587275e-49 | -8.615850e-47 |
| Msa0607610 | Msa0687870 | 0.932230 | 1.163246e-94 | -8.615850e-47 |
| Msa0607610 | Msa0709780 | 0.811984 | 5.324390e-51 | -8.615850e-47 |
| Msa0607610 | Msa0717380 | 0.807508 | 4.883776e-50 | -8.615850e-47 |
| Msa0607610 | Msa0867060 | 0.825709 | 4.043612e-54 | -8.615850e-47 |
| Msa0607610 | Msa0904660 | 0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0607610 | Msa1133540 | 0.815556 | 8.700708e-52 | -8.615850e-47 |
| Msa0607610 | Msa1266060 | 0.828148 | 1.055868e-54 | -8.615850e-47 |
| Msa0607610 | Msa1360960 | 0.804648 | 1.952791e-49 | -8.615850e-47 |
| Msa0607610 | Msa1373170 | 0.812884 | 3.386842e-51 | -8.615850e-47 |
| Msa0607610 | Msa1401390 | 0.928703 | 1.983736e-92 | -8.615850e-47 |
| Msa0607610 | Msa1410440 | 0.831017 | 2.117912e-55 | -8.615850e-47 |
| Msa0178120 | Msa0607610 | 0.809823 | 1.563791e-50 | -8.615850e-47 |
| Msa0427780 | Msa0607610 | 0.806944 | 6.431155e-50 | -8.615850e-47 |
| Msa0435370 | Msa0607610 | 0.801472 | 8.861501e-49 | -8.615850e-47 |
| Msa0435420 | Msa0607610 | 0.803523 | 3.346652e-49 | -8.615850e-47 |
| Msa0435570 | Msa0607610 | 0.819296 | 1.251488e-52 | -8.615850e-47 |
| Msa0478870 | Msa0607610 | 0.802581 | 5.240990e-49 | -8.615850e-47 |
| Msa0553560 | Msa0607610 | 0.880465 | 5.368718e-70 | -8.615850e-47 |
| Msa0573090 | Msa0607610 | 0.813065 | 3.090589e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607610 | MtrunA17_Chr4g0039291 | 97.449 | 392 | 3 | 5 | 1 | 389 | 1 | 388 | 0.0 | 748 |
| Msa0607610 | MtrunA17_Chr4g0020011 | 72.954 | 281 | 76 | 0 | 109 | 389 | 97 | 377 | 1.31e-153 | 438 |
| Msa0607610 | MtrunA17_Chr3g0090071 | 64.516 | 279 | 97 | 1 | 111 | 389 | 111 | 387 | 5.59e-132 | 384 |
| Msa0607610 | MtrunA17_Chr3g0114241 | 34.828 | 290 | 176 | 5 | 110 | 389 | 430 | 716 | 3.98e-49 | 177 |
| Msa0607610 | MtrunA17_Chr2g0320711 | 31.502 | 273 | 174 | 5 | 125 | 389 | 168 | 435 | 2.43e-34 | 132 |
| Msa0607610 | MtrunA17_Chr7g0240091 | 31.884 | 276 | 171 | 7 | 124 | 389 | 180 | 448 | 1.15e-30 | 122 |
| Msa0607610 | MtrunA17_Chr7g0245291 | 30.472 | 233 | 145 | 4 | 159 | 389 | 108 | 325 | 7.46e-25 | 103 |
| Msa0607610 | MtrunA17_Chr7g0245261 | 31.633 | 196 | 123 | 3 | 159 | 352 | 101 | 287 | 1.85e-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607610 | AT5G12470.1 | 76.512 | 281 | 66 | 0 | 109 | 389 | 103 | 383 | 2.42e-164 | 466 |
| Msa0607610 | AT3G56140.2 | 35.211 | 284 | 175 | 4 | 114 | 389 | 207 | 489 | 4.17e-53 | 184 |
| Msa0607610 | AT3G56140.1 | 35.714 | 280 | 171 | 4 | 118 | 389 | 430 | 708 | 8.73e-52 | 184 |
| Msa0607610 | AT3G56140.3 | 35.714 | 280 | 171 | 4 | 118 | 389 | 430 | 708 | 8.73e-52 | 184 |
| Msa0607610 | AT2G40400.2 | 34.375 | 288 | 180 | 4 | 110 | 389 | 413 | 699 | 1.77e-51 | 183 |
| Msa0607610 | AT2G40400.1 | 34.375 | 288 | 180 | 4 | 110 | 389 | 413 | 699 | 1.77e-51 | 183 |
| Msa0607610 | AT2G40400.3 | 34.034 | 238 | 149 | 3 | 110 | 339 | 413 | 650 | 2.14e-38 | 146 |
| Msa0607610 | AT5G22790.1 | 30.035 | 283 | 188 | 5 | 114 | 389 | 154 | 433 | 4.54e-32 | 125 |
| Msa0607610 | AT2G37860.3 | 29.964 | 277 | 175 | 7 | 124 | 389 | 164 | 432 | 2.79e-29 | 118 |
| Msa0607610 | AT2G37860.4 | 29.964 | 277 | 175 | 7 | 124 | 389 | 164 | 432 | 2.79e-29 | 118 |
| Msa0607610 | AT3G08640.1 | 29.752 | 242 | 155 | 5 | 150 | 389 | 94 | 322 | 9.17e-22 | 95.5 |
| Msa0607610 | AT3G08630.1 | 28.879 | 232 | 144 | 5 | 163 | 389 | 104 | 319 | 2.96e-21 | 94.4 |
| Msa0607610 | AT2G37860.2 | 26.984 | 189 | 124 | 4 | 124 | 303 | 164 | 347 | 8.79e-13 | 69.3 |
| Msa0607610 | AT2G37860.1 | 26.984 | 189 | 124 | 4 | 124 | 303 | 164 | 347 | 8.79e-13 | 69.3 |
Find 127 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAACCGGCAATACGTATT+TGG | 0.115303 | 4_2:-54533869 | Msa0607610:CDS |
| GATAGGTACCAAGTTCTTTC+TGG | 0.185122 | 4_2:-54533967 | Msa0607610:intron |
| CTTCCACAGGTTGCTCTCTC+TGG | 0.204802 | 4_2:-54535454 | Msa0607610:intron |
| CCAAGTCATTATCTTTGTTT+TGG | 0.213638 | 4_2:+54533707 | None:intergenic |
| AGCAGCACTGGTAGAAAATA+TGG | 0.239676 | 4_2:+54534307 | None:intergenic |
| AAGGAATGGGGATGGGTTTC+AGG | 0.239677 | 4_2:+54533357 | None:intergenic |
| TGCAAAGAAGGCTGTTAATA+AGG | 0.245873 | 4_2:-54534357 | Msa0607610:CDS |
| AAGACCTGGAATGCATTATC+TGG | 0.259642 | 4_2:+54535569 | None:intergenic |
| AATTATTGAACAGAGGCTTT+TGG | 0.323263 | 4_2:-54533944 | Msa0607610:CDS |
| CGAACCGGCAATACGTATTT+GGG | 0.327044 | 4_2:-54533868 | Msa0607610:CDS |
| TGGATTATGCACGTTGGATA+GGG | 0.345466 | 4_2:-54533741 | Msa0607610:CDS |
| TTGTTGTTGTTGGCGCAAGC+GGG | 0.349863 | 4_2:-54537429 | Msa0607610:CDS |
| CTGCCCAGATAATGCATTCC+AGG | 0.359487 | 4_2:-54535573 | Msa0607610:intron |
| GTTACCTTGCACAGCGTAAT+GGG | 0.387864 | 4_2:-54535310 | Msa0607610:intron |
| TGCTGCTTATGGTGTTTATA+TGG | 0.391910 | 4_2:-54534291 | Msa0607610:CDS |
| CTTTGCTTTGCTGTTCGAAC+CGG | 0.402782 | 4_2:-54533883 | Msa0607610:CDS |
| GAGAATGAGAAGAAAGAGAA+TGG | 0.416969 | 4_2:+54537724 | None:intergenic |
| TGAAGCAACCACCGCATAAA+CGG | 0.426527 | 4_2:+54537306 | None:intergenic |
| CAATAATTCCAGAAAGAACT+TGG | 0.431709 | 4_2:+54533959 | None:intergenic |
| CTCATGCTAGAGCAAGGAAT+GGG | 0.436391 | 4_2:+54533344 | None:intergenic |
| TGAACCCAAATACGTATTGC+CGG | 0.437016 | 4_2:+54533864 | None:intergenic |
| GACATCAGAGAACAAATTAA+CGG | 0.447455 | 4_2:-54533631 | Msa0607610:three_prime_UTR |
| GAATGAGGCGTTGTTGTTGT+TGG | 0.453993 | 4_2:-54537439 | Msa0607610:CDS |
| GTGGATTATGCACGTTGGAT+AGG | 0.462939 | 4_2:-54533742 | Msa0607610:CDS |
| GGTTACCTTGCACAGCGTAA+TGG | 0.466762 | 4_2:-54535311 | Msa0607610:intron |
| GAAAGAAGGTACGGCGGAAT+CGG | 0.471592 | 4_2:+54537572 | None:intergenic |
| CCACCACTTGGAGTCAGTGC+AGG | 0.480173 | 4_2:-54535620 | Msa0607610:CDS |
| CTTGCTCTAGCATGAGATGC+AGG | 0.481016 | 4_2:-54533337 | Msa0607610:three_prime_UTR |
| TGACTTAGCTTCGGCTATCA+AGG | 0.481342 | 4_2:-54537382 | Msa0607610:CDS |
| AGTTGGATCTGCTTCGTCAC+TGG | 0.485700 | 4_2:-54535273 | Msa0607610:intron |
| TATCAAGGAAGGTAAGATTC+CGG | 0.485810 | 4_2:-54537367 | Msa0607610:CDS |
| TATTCTTTCTTGCAAAGAGT+TGG | 0.485972 | 4_2:-54535424 | Msa0607610:CDS |
| GTTGTTGTTGTTGGCGCAAG+CGG | 0.486703 | 4_2:-54537430 | Msa0607610:CDS |
| GAAGAAAGAGAATGGGAAGA+AGG | 0.488748 | 4_2:+54537732 | None:intergenic |
| GGGAGGGATTTAGGAGTGGA+AGG | 0.490063 | 4_2:+54537702 | None:intergenic |
| AGAATGAGAAGAAAGAGAAT+GGG | 0.491291 | 4_2:+54537725 | None:intergenic |
| ATGCGGTGGTTGCTTCAGTT+TGG | 0.491847 | 4_2:-54537300 | Msa0607610:CDS |
| TTCGACGGTGGAGATTCATT+CGG | 0.496295 | 4_2:-54537552 | Msa0607610:CDS |
| CGGTGGTTGCTTCAGTTTGG+TGG | 0.501146 | 4_2:-54537297 | Msa0607610:CDS |
| GCTGCGCACACGACTCACTC+AGG | 0.502849 | 4_2:+54537810 | None:intergenic |
| GATCTGTGCGGTGGTTGATA+CGG | 0.503940 | 4_2:+54537616 | None:intergenic |
| GAGAAGGAGAAGGAGTGATA+CGG | 0.506494 | 4_2:+54537646 | None:intergenic |
| TGCCGCAATTAATGCAAAGA+AGG | 0.515316 | 4_2:-54534369 | Msa0607610:CDS |
| GCAGCACTGGTAGAAAATAT+GGG | 0.517884 | 4_2:+54534308 | None:intergenic |
| GGCGCAAGCGGGGAGGTCGT+TGG | 0.524312 | 4_2:-54537418 | Msa0607610:CDS |
| ATACGGAGACGGAGGGAAAG+TGG | 0.524321 | 4_2:+54537663 | None:intergenic |
| CGGAAAGAAGGAGAAGGAGA+AGG | 0.527272 | 4_2:+54537636 | None:intergenic |
| GAATCTCCACCGTCGAAAGA+AGG | 0.528306 | 4_2:+54537558 | None:intergenic |
| AGTTTATTTACCTGCACCTA+CGG | 0.529483 | 4_2:-54535654 | Msa0607610:CDS |
| GAAAGAGAATGGGAAGAAGG+AGG | 0.529887 | 4_2:+54537735 | None:intergenic |
| CTAAGAGAAACCGTAGGTGC+AGG | 0.531784 | 4_2:+54535644 | None:intergenic |
| ATGGGAAGAAGGAGGAACGA+AGG | 0.532917 | 4_2:+54537743 | None:intergenic |
| AGAAGGTACGGCGGAATCGG+TGG | 0.534117 | 4_2:+54537575 | None:intergenic |
| CTCGTAACATCAATTGAATG+AGG | 0.540384 | 4_2:+54533518 | None:intergenic |
| GTTGGATTTGAATGCGGCGT+CGG | 0.540654 | 4_2:-54537231 | Msa0607610:CDS |
| TCTCTGATGTCAAGTAATGA+AGG | 0.541604 | 4_2:+54533643 | None:intergenic |
| CTCATTCAATTGATGTTACG+AGG | 0.541710 | 4_2:-54533517 | Msa0607610:three_prime_UTR |
| CACCACTTGGAGTCAGTGCA+GGG | 0.544286 | 4_2:-54535619 | Msa0607610:CDS |
| CACTAAGTACAAGCTTGTGC+TGG | 0.546248 | 4_2:+54533908 | None:intergenic |
| GTACGGCGGAATCGGTGGAA+TGG | 0.550207 | 4_2:+54537580 | None:intergenic |
| TCCGCCGTACCTTCTTTCGA+CGG | 0.557166 | 4_2:-54537567 | Msa0607610:CDS |
| AGAAGGGAGGGATTTAGGAG+TGG | 0.561658 | 4_2:+54537698 | None:intergenic |
| CTGCGCACACGACTCACTCA+GGG | 0.563362 | 4_2:+54537811 | None:intergenic |
| TGGCAGTTTCTAGCAACCTC+AGG | 0.563504 | 4_2:-54534271 | Msa0607610:intron |
| AAAGAGCGGCGGATTGAATG+AGG | 0.564436 | 4_2:-54537454 | Msa0607610:CDS |
| AGCCTTCTTTGCATTAATTG+CGG | 0.566973 | 4_2:+54534367 | None:intergenic |
| CGGTGGTTGATACGGAAAGA+AGG | 0.568152 | 4_2:+54537624 | None:intergenic |
| AGCTTGTGCTGGTGCAACAA+AGG | 0.568917 | 4_2:+54533919 | None:intergenic |
| ATAAACACCATAAGCAGCAC+TGG | 0.569201 | 4_2:+54534295 | None:intergenic |
| GTTTCTCTTAGACCACCACT+TGG | 0.569402 | 4_2:-54535632 | Msa0607610:CDS |
| AGACCTGGAATGCATTATCT+GGG | 0.570627 | 4_2:+54535570 | None:intergenic |
| GGAGGACACGGTGGAGATGA+CGG | 0.571833 | 4_2:-54537531 | Msa0607610:CDS |
| GAGGTCGTTGGAGAGTGTGC+CGG | 0.573713 | 4_2:-54537406 | Msa0607610:CDS |
| CCAAAACAAAGATAATGACT+TGG | 0.576568 | 4_2:-54533707 | Msa0607610:three_prime_UTR |
| GGACATGGACACGGAGGAGA+CGG | 0.576585 | 4_2:-54537495 | Msa0607610:CDS |
| TTCCGGCGTCTGTAGTTGAG+AGG | 0.579757 | 4_2:-54537350 | Msa0607610:CDS |
| TGTTGTTGGCGCAAGCGGGG+AGG | 0.580429 | 4_2:-54537425 | Msa0607610:CDS |
| GGATTATGCACGTTGGATAG+GGG | 0.580434 | 4_2:-54533740 | Msa0607610:CDS |
| TGTTGTTGTTGGCGCAAGCG+GGG | 0.580768 | 4_2:-54537428 | Msa0607610:CDS |
| ATAAGAATAAGCAGAGTGCT+CGG | 0.580986 | 4_2:+54533556 | None:intergenic |
| AGCTTCGTAAGTGAGTGAAA+AGG | 0.583647 | 4_2:-54537790 | Msa0607610:five_prime_UTR |
| GAGAAGGAGTGATACGGAGA+CGG | 0.585406 | 4_2:+54537652 | None:intergenic |
| TGTGCCGGCTGACTTAGCTT+CGG | 0.587224 | 4_2:-54537391 | Msa0607610:CDS |
| TCTCATGCTAGAGCAAGGAA+TGG | 0.588577 | 4_2:+54533343 | None:intergenic |
| GCCGTACCTTCTTTCGACGG+TGG | 0.589280 | 4_2:-54537564 | Msa0607610:CDS |
| GCAAAGAGTTGGTGCAATTG+TGG | 0.590276 | 4_2:-54535413 | Msa0607610:intron |
| GACGGTGGAGATTCATTCGG+AGG | 0.591475 | 4_2:-54537549 | Msa0607610:CDS |
| ATAGCCGAAGCTAAGTCAGC+CGG | 0.591802 | 4_2:+54537387 | None:intergenic |
| CCTGCACTGACTCCAAGTGG+TGG | 0.593747 | 4_2:+54535620 | None:intergenic |
| TTTCTGGAATTATTGAACAG+AGG | 0.594616 | 4_2:-54533951 | Msa0607610:CDS |
| GCTAAGGTTGGATTTGAATG+CGG | 0.594787 | 4_2:-54537237 | Msa0607610:CDS |
| AGAAGTCTCCGTTTATGCGG+TGG | 0.595528 | 4_2:-54537314 | Msa0607610:CDS |
| CTAGAGCAAGGAATGGGGAT+GGG | 0.595641 | 4_2:+54533350 | None:intergenic |
| GCTAGAGCAAGGAATGGGGA+TGG | 0.596037 | 4_2:+54533349 | None:intergenic |
| AACAATGACGGACATGGACA+CGG | 0.598016 | 4_2:-54537504 | Msa0607610:CDS |
| CGGAGACGGAGGGAAAGTGG+AGG | 0.602640 | 4_2:+54537666 | None:intergenic |
| AGCAATGACGGAGGAAAGAG+CGG | 0.605733 | 4_2:-54537468 | Msa0607610:CDS |
| GGAGACGGAGAAAGCAATGA+CGG | 0.605922 | 4_2:-54537480 | Msa0607610:CDS |
| TTGAGAAGTCTCCGTTTATG+CGG | 0.611377 | 4_2:-54537317 | Msa0607610:CDS |
| GGAGACGGAGGGAAAGTGGA+GGG | 0.611726 | 4_2:+54537667 | None:intergenic |
| ATGCATTATCTGGGCAGTTG+TGG | 0.612230 | 4_2:+54535579 | None:intergenic |
| GGAGATTCATTCGGAGGACA+CGG | 0.612633 | 4_2:-54537543 | Msa0607610:CDS |
| TTGATACGGAAAGAAGGAGA+AGG | 0.613206 | 4_2:+54537630 | None:intergenic |
| TCCACCGTCGAAAGAAGGTA+CGG | 0.619051 | 4_2:+54537563 | None:intergenic |
| GGAAATTGTGTTCGCCGATG+TGG | 0.619314 | 4_2:-54536388 | Msa0607610:intron |
| CTGCATCTCATGCTAGAGCA+AGG | 0.621611 | 4_2:+54533338 | None:intergenic |
| AAGGAGTGATACGGAGACGG+AGG | 0.622593 | 4_2:+54537655 | None:intergenic |
| TTAGCTTCGGCTATCAAGGA+AGG | 0.626770 | 4_2:-54537378 | Msa0607610:CDS |
| GCCCCTGCACTGACTCCAAG+TGG | 0.636274 | 4_2:+54535617 | None:intergenic |
| AACCTCTCAACTACAGACGC+CGG | 0.638287 | 4_2:+54537348 | None:intergenic |
| AGGAGTGATACGGAGACGGA+GGG | 0.638317 | 4_2:+54537656 | None:intergenic |
| CTGCTGCTGAGTATGATCGC+CGG | 0.647821 | 4_2:-54536434 | Msa0607610:CDS |
| TGTTAATAAGGATTCTGCAG+AGG | 0.649189 | 4_2:-54534345 | Msa0607610:CDS |
| GTGGAATGGAGAATGAAGAG+AGG | 0.659755 | 4_2:+54537594 | None:intergenic |
| TGAGAATATTCATACCACAT+CGG | 0.668109 | 4_2:+54536374 | None:intergenic |
| GACGGAGAAAGCAATGACGG+AGG | 0.670438 | 4_2:-54537477 | Msa0607610:CDS |
| GATGGGTGGATTATGCACGT+TGG | 0.670645 | 4_2:-54533747 | Msa0607610:CDS |
| TCATGCTAGAGCAAGGAATG+GGG | 0.677655 | 4_2:+54533345 | None:intergenic |
| TGCGCACACGACTCACTCAG+GGG | 0.679931 | 4_2:+54537812 | None:intergenic |
| ACCACTTGGAGTCAGTGCAG+GGG | 0.698840 | 4_2:-54535618 | Msa0607610:CDS |
| GATTCATTCGGAGGACACGG+TGG | 0.704653 | 4_2:-54537540 | Msa0607610:CDS |
| AATGACGGAGGAAAGAGCGG+CGG | 0.719319 | 4_2:-54537465 | Msa0607610:CDS |
| AATGACGGACATGGACACGG+AGG | 0.724089 | 4_2:-54537501 | Msa0607610:CDS |
| TGAAGAGAGGATCTGTGCGG+TGG | 0.732308 | 4_2:+54537607 | None:intergenic |
| GGTGGTCTAAGAGAAACCGT+AGG | 0.739590 | 4_2:+54535638 | None:intergenic |
| ACCGTCGAAAGAAGGTACGG+CGG | 0.744756 | 4_2:+54537566 | None:intergenic |
| GAATGAAGAGAGGATCTGTG+CGG | 0.828823 | 4_2:+54537604 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTAATTTAGTTTCTA+TGG | - | chr4_2:54533975-54533994 | Msa0607610:intron | 10.0% |
| !! | ATATAATGATATAAATGAAT+TGG | - | chr4_2:54535130-54535149 | Msa0607610:intron | 10.0% |
| !!! | ATAAAAAAAAACATTTTCTT+TGG | - | chr4_2:54535177-54535196 | Msa0607610:intron | 10.0% |
| !!! | ATATATACTTTTTTTATCTT+TGG | - | chr4_2:54537657-54537676 | Msa0607610:CDS | 10.0% |
| !!! | TATATACTTTTTTTATCTTT+GGG | - | chr4_2:54537658-54537677 | Msa0607610:CDS | 10.0% |
| !!! | ATGTTTTTTAATTTGAATTG+AGG | - | chr4_2:54534087-54534106 | Msa0607610:intron | 15.0% |
| !!! | TGTTTTTTAATTTGAATTGA+GGG | - | chr4_2:54534088-54534107 | Msa0607610:intron | 15.0% |
| !!! | TTATTTTTAATGTTTCTAGT+AGG | - | chr4_2:54536264-54536283 | Msa0607610:intron | 15.0% |
| !! | AATATATGATATAGATACTT+TGG | + | chr4_2:54536617-54536636 | None:intergenic | 15.0% |
| !! | AGAGATAAAAAAAAACTATT+GGG | + | chr4_2:54537541-54537560 | None:intergenic | 15.0% |
| !! | TAGAGATAAAAAAAAACTAT+TGG | + | chr4_2:54537542-54537561 | None:intergenic | 15.0% |
| !! | CTGAATTAATTTAGTTGTAA+TGG | - | chr4_2:54534035-54534054 | Msa0607610:intron | 20.0% |
| !!! | TTTAGTTATATTGAGTGTTT+TGG | - | chr4_2:54534523-54534542 | Msa0607610:intron | 20.0% |
| !!! | AAAACATTTTCTTTGGTATT+AGG | - | chr4_2:54535184-54535203 | Msa0607610:intron | 20.0% |
| !! | ACTAATTGTTATACAAAATG+TGG | - | chr4_2:54535809-54535828 | Msa0607610:intron | 20.0% |
| !!! | ATCATATACCCATAATTTTA+AGG | + | chr4_2:54536198-54536217 | None:intergenic | 20.0% |
| !!! | AAGAGTTATTTTTCTATTCA+TGG | - | chr4_2:54536316-54536335 | Msa0607610:intron | 20.0% |
| !! | ATATGAAATCATTTATCTAC+TGG | - | chr4_2:54536555-54536574 | Msa0607610:intron | 20.0% |
| !!! | AAATCTTTTATTGAACGAAA+AGG | + | chr4_2:54536644-54536663 | None:intergenic | 20.0% |
| !!! | TTCATTGTTTTAAATGTAAG+TGG | - | chr4_2:54536682-54536701 | Msa0607610:intron | 20.0% |
| !!! | CTCAAACATTTTTAATATGA+TGG | + | chr4_2:54537103-54537122 | None:intergenic | 20.0% |
| !!! | GGATTCATTGTTTTAAATTG+CGG | - | chr4_2:54534109-54534128 | Msa0607610:intron | 25.0% |
| ! | AGTTTGAATATGGTTATTGT+TGG | - | chr4_2:54534492-54534511 | Msa0607610:intron | 25.0% |
| ! | GTTTGAATATGGTTATTGTT+GGG | - | chr4_2:54534493-54534512 | Msa0607610:intron | 25.0% |
| !! | TTATATGTTGATTGACAATC+TGG | - | chr4_2:54534656-54534675 | Msa0607610:intron | 25.0% |
| !! | TATATGTTGATTGACAATCT+GGG | - | chr4_2:54534657-54534676 | Msa0607610:intron | 25.0% |
| ! | AAACATGTCAAAAATAGTCT+GGG | + | chr4_2:54534949-54534968 | None:intergenic | 25.0% |
| !! | ATGAAAAACACTCTTTTGTT+TGG | - | chr4_2:54535242-54535261 | Msa0607610:intron | 25.0% |
| !!! | TGAAAAACACTCTTTTGTTT+GGG | - | chr4_2:54535243-54535262 | Msa0607610:intron | 25.0% |
| ! | GTTAACAGACATATGTATTA+AGG | + | chr4_2:54535340-54535359 | None:intergenic | 25.0% |
| !!! | AAACAATTTTGACAACCTAA+TGG | - | chr4_2:54535636-54535655 | Msa0607610:CDS | 25.0% |
| ! | CAATTGTGGTATGTATAATT+TGG | - | chr4_2:54535742-54535761 | Msa0607610:intron | 25.0% |
| ! | TCTCATTTACCTTTAAATCA+TGG | - | chr4_2:54536073-54536092 | Msa0607610:intron | 25.0% |
| ! | GAATTTAAACACTATAAGTC+CGG | + | chr4_2:54536111-54536130 | None:intergenic | 25.0% |
| ! | TCCTGTTAACCTTAAAATTA+TGG | - | chr4_2:54536186-54536205 | Msa0607610:intron | 25.0% |
| ! | CCTGTTAACCTTAAAATTAT+GGG | - | chr4_2:54536187-54536206 | Msa0607610:intron | 25.0% |
| ! | ATATGATATAGATACTTTGG+CGG | + | chr4_2:54536614-54536633 | None:intergenic | 25.0% |
| !! | AGCATTAGTAGATTTTAGAT+TGG | + | chr4_2:54536938-54536957 | None:intergenic | 25.0% |
| !! | TCTAAAATCTACTAATGCTT+CGG | - | chr4_2:54536939-54536958 | Msa0607610:intron | 25.0% |
| ! | TCATAAAACATGAGTTATAC+TGG | + | chr4_2:54537361-54537380 | None:intergenic | 25.0% |
| !!! | CAAGTCATTATCTTTGTTTT+GGG | + | chr4_2:54537436-54537455 | None:intergenic | 25.0% |
| !!! | TTTTTTTATCTTTGGGTACA+AGG | - | chr4_2:54537665-54537684 | Msa0607610:CDS | 25.0% |
| AGAATGAGAAGAAAGAGAAT+GGG | + | chr4_2:54533419-54533438 | None:intergenic | 30.0% | |
| ! | TGATGATCTTTTTCTTGCTA+AGG | - | chr4_2:54533888-54533907 | Msa0607610:CDS | 30.0% |
| ATAGTGTAAGAATGAAACCT+TGG | + | chr4_2:54533944-54533963 | None:intergenic | 30.0% | |
| AATGGAATTAAAGCTTGACA+AGG | - | chr4_2:54534053-54534072 | Msa0607610:intron | 30.0% | |
| !!! | ATTGTTTTAAATTGCGGTTG+CGG | - | chr4_2:54534115-54534134 | Msa0607610:intron | 30.0% |
| ATATGAAGCAGATTGAGATT+TGG | - | chr4_2:54534297-54534316 | Msa0607610:CDS | 30.0% | |
| TATGAAGCAGATTGAGATTT+GGG | - | chr4_2:54534298-54534317 | Msa0607610:CDS | 30.0% | |
| GGGATTGAATAGTTTGAATA+TGG | - | chr4_2:54534482-54534501 | Msa0607610:intron | 30.0% | |
| GAGTTGTATGATTATTGAGT+AGG | - | chr4_2:54534561-54534580 | Msa0607610:intron | 30.0% | |
| TGATTATTGAGTAGGAAGAT+TGG | - | chr4_2:54534569-54534588 | Msa0607610:intron | 30.0% | |
| GATTATTGAGTAGGAAGATT+GGG | - | chr4_2:54534570-54534589 | Msa0607610:intron | 30.0% | |
| TGAGAATATTCATACCACAT+CGG | + | chr4_2:54534770-54534789 | None:intergenic | 30.0% | |
| GTAGTAACTATAACTAAGCA+AGG | + | chr4_2:54534822-54534841 | None:intergenic | 30.0% | |
| TACTACATGTTGTCTTATGA+CGG | - | chr4_2:54534836-54534855 | Msa0607610:intron | 30.0% | |
| CAAAGATGAAAATGCTAACA+AGG | + | chr4_2:54534925-54534944 | None:intergenic | 30.0% | |
| AACATGTCAAAAATAGTCTG+GGG | + | chr4_2:54534948-54534967 | None:intergenic | 30.0% | |
| GAAACATGTCAAAAATAGTC+TGG | + | chr4_2:54534950-54534969 | None:intergenic | 30.0% | |
| TTGACTAGAACTTGAGATAT+CGG | - | chr4_2:54534999-54535018 | Msa0607610:intron | 30.0% | |
| !!! | TTTTTTTCTTCGATTTCCTC+TGG | - | chr4_2:54535031-54535050 | Msa0607610:intron | 30.0% |
| !!! | GGAGAAATTGACAGTTTTTT+TGG | - | chr4_2:54535151-54535170 | Msa0607610:intron | 30.0% |
| !! | ATAGTAGCATCAGAAGTATT+TGG | + | chr4_2:54535211-54535230 | None:intergenic | 30.0% |
| AAGAATACTACATTTCTCTG+TGG | - | chr4_2:54535268-54535287 | Msa0607610:intron | 30.0% | |
| ACCATGTGAAAGTAAGATAT+GGG | + | chr4_2:54535605-54535624 | None:intergenic | 30.0% | |
| AACCATGTGAAAGTAAGATA+TGG | + | chr4_2:54535606-54535625 | None:intergenic | 30.0% | |
| CGTAAGTAAATACTACCATT+AGG | + | chr4_2:54535654-54535673 | None:intergenic | 30.0% | |
| TATTCTTTCTTGCAAAGAGT+TGG | - | chr4_2:54535717-54535736 | Msa0607610:intron | 30.0% | |
| AGTTCTCATTTGCCTAATTA+TGG | - | chr4_2:54535893-54535912 | Msa0607610:intron | 30.0% | |
| TTACCTTTAAATCATGGCTT+TGG | - | chr4_2:54536079-54536098 | Msa0607610:intron | 30.0% | |
| !!! | CCCATAATTTTAAGGTTAAC+AGG | + | chr4_2:54536190-54536209 | None:intergenic | 30.0% |
| GTATTGTTGAAATTCTAGCA+TGG | - | chr4_2:54536234-54536253 | Msa0607610:intron | 30.0% | |
| ATGGTTAAGTTTAATTCAGC+TGG | - | chr4_2:54536382-54536401 | Msa0607610:intron | 30.0% | |
| TGGTTAAGTTTAATTCAGCT+GGG | - | chr4_2:54536383-54536402 | Msa0607610:intron | 30.0% | |
| CAATGAATGCAAATAACACT+CGG | + | chr4_2:54536669-54536688 | None:intergenic | 30.0% | |
| AAATGTAAGTGGAATCAACT+AGG | - | chr4_2:54536693-54536712 | Msa0607610:intron | 30.0% | |
| ! | TTTGCATTTTGCTTTCATTC+AGG | - | chr4_2:54536730-54536749 | Msa0607610:intron | 30.0% |
| !! | ATTTTGCTTTCATTCAGGTT+GGG | - | chr4_2:54536735-54536754 | Msa0607610:intron | 30.0% |
| ! | CACATTATTCTTTTTACCTG+AGG | + | chr4_2:54536889-54536908 | None:intergenic | 30.0% |
| !!! | ACCATTAGTGAGATTTTTTG+AGG | - | chr4_2:54536912-54536931 | Msa0607610:intron | 30.0% |
| ! | ATCTTTTATCACATCATGCA+TGG | - | chr4_2:54537062-54537081 | Msa0607610:intron | 30.0% |
| ! | AAAAATCTGATTTGCCTGAT+AGG | - | chr4_2:54537157-54537176 | Msa0607610:intron | 30.0% |
| CAATAATTCCAGAAAGAACT+TGG | + | chr4_2:54537185-54537204 | None:intergenic | 30.0% | |
| !! | TTTCTGGAATTATTGAACAG+AGG | - | chr4_2:54537190-54537209 | Msa0607610:intron | 30.0% |
| ! | AATTATTGAACAGAGGCTTT+TGG | - | chr4_2:54537197-54537216 | Msa0607610:intron | 30.0% |
| ! | TATGATTTTGCCTTTACAGA+TGG | - | chr4_2:54537376-54537395 | Msa0607610:CDS | 30.0% |
| ! | ATGATTTTGCCTTTACAGAT+GGG | - | chr4_2:54537377-54537396 | Msa0607610:CDS | 30.0% |
| !! | CCAAGTCATTATCTTTGTTT+TGG | + | chr4_2:54537437-54537456 | None:intergenic | 30.0% |
| CCAAAACAAAGATAATGACT+TGG | - | chr4_2:54537434-54537453 | Msa0607610:CDS | 30.0% | |
| GACATCAGAGAACAAATTAA+CGG | - | chr4_2:54537510-54537529 | Msa0607610:CDS | 30.0% | |
| !!! | AGAAGCAAGTTTTTTCTTGA+TGG | - | chr4_2:54537738-54537757 | Msa0607610:CDS | 30.0% |
| GAGAATGAGAAGAAAGAGAA+TGG | + | chr4_2:54533420-54533439 | None:intergenic | 35.0% | |
| !! | GATGACGGAAAAAACAATGA+CGG | - | chr4_2:54533625-54533644 | Msa0607610:three_prime_UTR | 35.0% |
| TATCAAGGAAGGTAAGATTC+CGG | - | chr4_2:54533774-54533793 | Msa0607610:intron | 35.0% | |
| ! | GATCTTTTTCTTGCTAAGGT+TGG | - | chr4_2:54533892-54533911 | Msa0607610:CDS | 35.0% |
| ATGAAGCAGATTGAGATTTG+GGG | - | chr4_2:54534299-54534318 | Msa0607610:CDS | 35.0% | |
| CATCGAAAAATTTCTCTCTC+CGG | + | chr4_2:54534729-54534748 | None:intergenic | 35.0% | |
| !! | AGAGAAATTTTTCGATGAGC+TGG | - | chr4_2:54534732-54534751 | Msa0607610:intron | 35.0% |
| AACTAAGCAAGGAAATTCAC+AGG | + | chr4_2:54534811-54534830 | None:intergenic | 35.0% | |
| !! | GTATTTGTTGTCACTTCTTC+TGG | - | chr4_2:54535063-54535082 | Msa0607610:intron | 35.0% |
| AAACGATAGCATGTACAAAG+TGG | + | chr4_2:54535365-54535384 | None:intergenic | 35.0% | |
| GACTACAATACATGTTTCAC+AGG | + | chr4_2:54535404-54535423 | None:intergenic | 35.0% | |
| CAATGCAATAGGGATGTTAT+GGG | + | chr4_2:54535431-54535450 | None:intergenic | 35.0% | |
| ACAATGCAATAGGGATGTTA+TGG | + | chr4_2:54535432-54535451 | None:intergenic | 35.0% | |
| AGTTTATTTACCTGCACCTA+CGG | - | chr4_2:54535487-54535506 | Msa0607610:intron | 35.0% | |
| ATATGGGATATATCAAGACC+TGG | + | chr4_2:54535589-54535608 | None:intergenic | 35.0% | |
| TCCCATATCTTACTTTCACA+TGG | - | chr4_2:54535601-54535620 | Msa0607610:CDS | 35.0% | |
| CATTCTTAATTTCCTTCCAC+AGG | - | chr4_2:54535674-54535693 | Msa0607610:CDS | 35.0% | |
| CCACAGGAAACTAAAAAGAA+AGG | + | chr4_2:54535783-54535802 | None:intergenic | 35.0% | |
| !!! | CCTTTCTTTTTAGTTTCCTG+TGG | - | chr4_2:54535780-54535799 | Msa0607610:intron | 35.0% |
| !! | AGCACAAGAGTACCATAATT+AGG | + | chr4_2:54535908-54535927 | None:intergenic | 35.0% |
| ATAAGAGTAATGTGAAGAGC+AGG | + | chr4_2:54535973-54535992 | None:intergenic | 35.0% | |
| CATTACTCTTATGAGCACTT+TGG | - | chr4_2:54535981-54536000 | Msa0607610:intron | 35.0% | |
| !! | ACTCTGCTTAACTTGTGTTT+CGG | + | chr4_2:54536019-54536038 | None:intergenic | 35.0% |
| GAACCAAAGCCATGATTTAA+AGG | + | chr4_2:54536085-54536104 | None:intergenic | 35.0% | |
| CGTCTCAAGATTTGTATTGT+TGG | + | chr4_2:54536133-54536152 | None:intergenic | 35.0% | |
| !! | CTCTCTACAAGTTTGTTGTA+TGG | - | chr4_2:54536363-54536382 | Msa0607610:intron | 35.0% |
| TTAAGTTTAATTCAGCTGGG+TGG | - | chr4_2:54536386-54536405 | Msa0607610:intron | 35.0% | |
| TAAGTTTAATTCAGCTGGGT+GGG | - | chr4_2:54536387-54536406 | Msa0607610:intron | 35.0% | |
| AAAGCCTAAATCTTGGTCAT+TGG | - | chr4_2:54536443-54536462 | Msa0607610:intron | 35.0% | |
| TCTGAAGAACAAGATAGTGA+AGG | - | chr4_2:54536579-54536598 | Msa0607610:intron | 35.0% | |
| CTGAAGAACAAGATAGTGAA+GGG | - | chr4_2:54536580-54536599 | Msa0607610:intron | 35.0% | |
| ! | CATTTTGCTTTCATTCAGGT+TGG | - | chr4_2:54536734-54536753 | Msa0607610:intron | 35.0% |
| AGCCTTCTTTGCATTAATTG+CGG | + | chr4_2:54536777-54536796 | None:intergenic | 35.0% | |
| TGCAAAGAAGGCTGTTAATA+AGG | - | chr4_2:54536784-54536803 | Msa0607610:intron | 35.0% | |
| TGTTAATAAGGATTCTGCAG+AGG | - | chr4_2:54536796-54536815 | Msa0607610:intron | 35.0% | |
| ! | TGCTGCTTATGGTGTTTATA+TGG | - | chr4_2:54536850-54536869 | Msa0607610:intron | 35.0% |
| GCCTCAAAAAATCTCACTAA+TGG | + | chr4_2:54536916-54536935 | None:intergenic | 35.0% | |
| TCTCTGATGTCAAGTAATGA+AGG | + | chr4_2:54537501-54537520 | None:intergenic | 35.0% | |
| ! | ATAAGAATAAGCAGAGTGCT+CGG | + | chr4_2:54537588-54537607 | None:intergenic | 35.0% |
| CTCGTAACATCAATTGAATG+AGG | + | chr4_2:54537626-54537645 | None:intergenic | 35.0% | |
| CTCATTCAATTGATGTTACG+AGG | - | chr4_2:54537624-54537643 | Msa0607610:CDS | 35.0% | |
| AGCTTCGTAAGTGAGTGAAA+AGG | - | chr4_2:54533351-54533370 | Msa0607610:three_prime_UTR | 40.0% | |
| GAAGAAAGAGAATGGGAAGA+AGG | + | chr4_2:54533412-54533431 | None:intergenic | 40.0% | |
| GAAAAAGAAGGGAGGGATTT+AGG | + | chr4_2:54533451-54533470 | None:intergenic | 40.0% | |
| AGGGAAAGAAAAAGAAGGGA+GGG | + | chr4_2:54533458-54533477 | None:intergenic | 40.0% | |
| GTGGAGGGAAAGAAAAAGAA+GGG | + | chr4_2:54533462-54533481 | None:intergenic | 40.0% | |
| AGTGGAGGGAAAGAAAAAGA+AGG | + | chr4_2:54533463-54533482 | None:intergenic | 40.0% | |
| TTGATACGGAAAGAAGGAGA+AGG | + | chr4_2:54533514-54533533 | None:intergenic | 40.0% | |
| !! | GGAAAAAACAATGACGGACA+TGG | - | chr4_2:54533631-54533650 | Msa0607610:three_prime_UTR | 40.0% |
| ! | GTCTGTAGTTGAGAGGTTTT+TGG | - | chr4_2:54533798-54533817 | Msa0607610:intron | 40.0% |
| TTGAGAAGTCTCCGTTTATG+CGG | - | chr4_2:54533824-54533843 | Msa0607610:intron | 40.0% | |
| GCTAAGGTTGGATTTGAATG+CGG | - | chr4_2:54533904-54533923 | Msa0607610:CDS | 40.0% | |
| AAACTAAGACTCTGCTATGG+TGG | + | chr4_2:54534226-54534245 | None:intergenic | 40.0% | |
| AGCAAACTAAGACTCTGCTA+TGG | + | chr4_2:54534229-54534248 | None:intergenic | 40.0% | |
| CTACTGCATCAGCAATATTG+TGG | - | chr4_2:54534439-54534458 | Msa0607610:intron | 40.0% | |
| CAAACTATTCAATCCCTCCA+TGG | + | chr4_2:54534478-54534497 | None:intergenic | 40.0% | |
| CAAATACGACATACAACCAG+AGG | + | chr4_2:54535050-54535069 | None:intergenic | 40.0% | |
| ATCCCTATTGCATTGTTCTC+AGG | - | chr4_2:54535436-54535455 | Msa0607610:CDS | 40.0% | |
| GACCTGAGAACAATGCAATA+GGG | + | chr4_2:54535441-54535460 | None:intergenic | 40.0% | |
| TGACCTGAGAACAATGCAAT+AGG | + | chr4_2:54535442-54535461 | None:intergenic | 40.0% | |
| ATTGCATTGTTCTCAGGTCA+TGG | - | chr4_2:54535442-54535461 | Msa0607610:CDS | 40.0% | |
| AGACCTGGAATGCATTATCT+GGG | + | chr4_2:54535574-54535593 | None:intergenic | 40.0% | |
| AAGACCTGGAATGCATTATC+TGG | + | chr4_2:54535575-54535594 | None:intergenic | 40.0% | |
| AACAATTAGTCACTAGCCAC+AGG | + | chr4_2:54535799-54535818 | None:intergenic | 40.0% | |
| AGATCCAACTGCAAAAAGCT+TGG | + | chr4_2:54535858-54535877 | None:intergenic | 40.0% | |
| TATGGTACTCTTGTGCTTTG+TGG | - | chr4_2:54535911-54535930 | Msa0607610:intron | 40.0% | |
| ! | CAGAGTCATGATTTTGCAGT+GGG | - | chr4_2:54536033-54536052 | Msa0607610:intron | 40.0% |
| ! | AGAGTCATGATTTTGCAGTG+GGG | - | chr4_2:54536034-54536053 | Msa0607610:intron | 40.0% |
| AGTAGGCTGTTTGAATGCTA+TGG | - | chr4_2:54536281-54536300 | Msa0607610:intron | 40.0% | |
| GTAGGCTGTTTGAATGCTAT+GGG | - | chr4_2:54536282-54536301 | Msa0607610:intron | 40.0% | |
| CAAGCCAATGACCAAGATTT+AGG | + | chr4_2:54536450-54536469 | None:intergenic | 40.0% | |
| TGCCGCAATTAATGCAAAGA+AGG | - | chr4_2:54536772-54536791 | Msa0607610:intron | 40.0% | |
| !! | GCAGCACTGGTAGAAAATAT+GGG | + | chr4_2:54536836-54536855 | None:intergenic | 40.0% |
| !! | AGCAGCACTGGTAGAAAATA+TGG | + | chr4_2:54536837-54536856 | None:intergenic | 40.0% |
| !!! | TTTTCTACCAGTGCTGCTTA+TGG | - | chr4_2:54536839-54536858 | Msa0607610:intron | 40.0% |
| ATAAACACCATAAGCAGCAC+TGG | + | chr4_2:54536849-54536868 | None:intergenic | 40.0% | |
| ATGCTTCGGTCAACTAATGT+TGG | - | chr4_2:54536953-54536972 | Msa0607610:intron | 40.0% | |
| GAAAGAACTTGGTACCTATC+AGG | + | chr4_2:54537174-54537193 | None:intergenic | 40.0% | |
| GATAGGTACCAAGTTCTTTC+TGG | - | chr4_2:54537174-54537193 | Msa0607610:intron | 40.0% | |
| TGAACCCAAATACGTATTGC+CGG | + | chr4_2:54537280-54537299 | None:intergenic | 40.0% | |
| ! | ATTTTGCCTTTACAGATGGG+TGG | - | chr4_2:54537380-54537399 | Msa0607610:CDS | 40.0% |
| CATAATCCACCCATCTGTAA+AGG | + | chr4_2:54537389-54537408 | None:intergenic | 40.0% | |
| TGGATTATGCACGTTGGATA+GGG | - | chr4_2:54537400-54537419 | Msa0607610:CDS | 40.0% | |
| GAAAGAGAATGGGAAGAAGG+AGG | + | chr4_2:54533409-54533428 | None:intergenic | 45.0% | |
| GAGGGAAAGAAAAAGAAGGG+AGG | + | chr4_2:54533459-54533478 | None:intergenic | 45.0% | |
| GAGAAGGAGAAGGAGTGATA+CGG | + | chr4_2:54533498-54533517 | None:intergenic | 45.0% | |
| GAATGAAGAGAGGATCTGTG+CGG | + | chr4_2:54533540-54533559 | None:intergenic | 45.0% | |
| GTGGAATGGAGAATGAAGAG+AGG | + | chr4_2:54533550-54533569 | None:intergenic | 45.0% | |
| TTCGACGGTGGAGATTCATT+CGG | - | chr4_2:54533589-54533608 | Msa0607610:three_prime_UTR | 45.0% | |
| !! | AACAATGACGGACATGGACA+CGG | - | chr4_2:54533637-54533656 | Msa0607610:three_prime_UTR | 45.0% |
| !! | GAATGAGGCGTTGTTGTTGT+TGG | - | chr4_2:54533702-54533721 | Msa0607610:three_prime_UTR | 45.0% |
| TGACTTAGCTTCGGCTATCA+AGG | - | chr4_2:54533759-54533778 | Msa0607610:intron | 45.0% | |
| TTAGCTTCGGCTATCAAGGA+AGG | - | chr4_2:54533763-54533782 | Msa0607610:intron | 45.0% | |
| TGAAGCAACCACCGCATAAA+CGG | + | chr4_2:54533838-54533857 | None:intergenic | 45.0% | |
| GTCTATTGCGTTTCCTGATG+TGG | - | chr4_2:54534373-54534392 | Msa0607610:CDS | 45.0% | |
| AACACATGTACGACCACATC+AGG | + | chr4_2:54534389-54534408 | None:intergenic | 45.0% | |
| AGTAGCATTGCACTGCAGTT+GGG | + | chr4_2:54534424-54534443 | None:intergenic | 45.0% | |
| CTGCATCAGCAATATTGTGG+AGG | - | chr4_2:54534442-54534461 | Msa0607610:intron | 45.0% | |
| AGGCAACTTGAAACCATGGA+GGG | - | chr4_2:54534462-54534481 | Msa0607610:intron | 45.0% | |
| TCATACTCAGCAGCAGTCTA+GGG | + | chr4_2:54534703-54534722 | None:intergenic | 45.0% | |
| ATCATACTCAGCAGCAGTCT+AGG | + | chr4_2:54534704-54534723 | None:intergenic | 45.0% | |
| TGCCGTACACTGATGTTCTT+TGG | - | chr4_2:54534878-54534897 | Msa0607610:intron | 45.0% | |
| GCCGTACACTGATGTTCTTT+GGG | - | chr4_2:54534879-54534898 | Msa0607610:intron | 45.0% | |
| CCCCAAAGAACATCAGTGTA+CGG | + | chr4_2:54534883-54534902 | None:intergenic | 45.0% | |
| CCGTACACTGATGTTCTTTG+GGG | - | chr4_2:54534880-54534899 | Msa0607610:intron | 45.0% | |
| GTTTCTCTTAGACCACCACT+TGG | - | chr4_2:54535509-54535528 | Msa0607610:intron | 45.0% | |
| ATGCATTATCTGGGCAGTTG+TGG | + | chr4_2:54535565-54535584 | None:intergenic | 45.0% | |
| !! | GCAAAGAGTTGGTGCAATTG+TGG | - | chr4_2:54535728-54535747 | Msa0607610:intron | 45.0% |
| GTTACCTTGCACAGCGTAAT+GGG | - | chr4_2:54535831-54535850 | Msa0607610:intron | 45.0% | |
| ! | GCAGAGTCATGATTTTGCAG+TGG | - | chr4_2:54536032-54536051 | Msa0607610:intron | 45.0% |
| !! | ATCATGGCTTTGGTTCTAGC+CGG | - | chr4_2:54536089-54536108 | Msa0607610:intron | 45.0% |
| GCACTGCATCATAGACAAAC+TGG | + | chr4_2:54536423-54536442 | None:intergenic | 45.0% | |
| GCAGTGCAAAGCCTAAATCT+TGG | - | chr4_2:54536436-54536455 | Msa0607610:CDS | 45.0% | |
| CACTAAGTACAAGCTTGTGC+TGG | + | chr4_2:54537236-54537255 | None:intergenic | 45.0% | |
| !! | CTTTGCTTTGCTGTTCGAAC+CGG | - | chr4_2:54537258-54537277 | Msa0607610:CDS | 45.0% |
| TCGAACCGGCAATACGTATT+TGG | - | chr4_2:54537272-54537291 | Msa0607610:CDS | 45.0% | |
| CGAACCGGCAATACGTATTT+GGG | - | chr4_2:54537273-54537292 | Msa0607610:CDS | 45.0% | |
| ! | GTGGATTATGCACGTTGGAT+AGG | - | chr4_2:54537399-54537418 | Msa0607610:CDS | 45.0% |
| GGATTATGCACGTTGGATAG+GGG | - | chr4_2:54537401-54537420 | Msa0607610:CDS | 45.0% | |
| ! | GGGTTTCAGGTCAAAAACAC+AGG | + | chr4_2:54537774-54537793 | None:intergenic | 45.0% |
| TCATGCTAGAGCAAGGAATG+GGG | + | chr4_2:54537799-54537818 | None:intergenic | 45.0% | |
| CTCATGCTAGAGCAAGGAAT+GGG | + | chr4_2:54537800-54537819 | None:intergenic | 45.0% | |
| TCTCATGCTAGAGCAAGGAA+TGG | + | chr4_2:54537801-54537820 | None:intergenic | 45.0% | |
| !!! | TTATTTTTTTTTTTTACTTT+TGG | - | chr4_2:54537008-54537027 | Msa0607610:intron | 5.0% |
| ATGGGAAGAAGGAGGAACGA+AGG | + | chr4_2:54533401-54533420 | None:intergenic | 50.0% | |
| AGAAGGGAGGGATTTAGGAG+TGG | + | chr4_2:54533446-54533465 | None:intergenic | 50.0% | |
| GAGAAGGAGTGATACGGAGA+CGG | + | chr4_2:54533492-54533511 | None:intergenic | 50.0% | |
| CGGAAAGAAGGAGAAGGAGA+AGG | + | chr4_2:54533508-54533527 | None:intergenic | 50.0% | |
| ! | CGGTGGTTGATACGGAAAGA+AGG | + | chr4_2:54533520-54533539 | None:intergenic | 50.0% |
| ! | GATCTGTGCGGTGGTTGATA+CGG | + | chr4_2:54533528-54533547 | None:intergenic | 50.0% |
| ! | GAAAGAAGGTACGGCGGAAT+CGG | + | chr4_2:54533572-54533591 | None:intergenic | 50.0% |
| TCCACCGTCGAAAGAAGGTA+CGG | + | chr4_2:54533581-54533600 | None:intergenic | 50.0% | |
| GAATCTCCACCGTCGAAAGA+AGG | + | chr4_2:54533586-54533605 | None:intergenic | 50.0% | |
| GGAGATTCATTCGGAGGACA+CGG | - | chr4_2:54533598-54533617 | Msa0607610:three_prime_UTR | 50.0% | |
| GGAGACGGAGAAAGCAATGA+CGG | - | chr4_2:54533661-54533680 | Msa0607610:three_prime_UTR | 50.0% | |
| ! | AGCAATGACGGAGGAAAGAG+CGG | - | chr4_2:54533673-54533692 | Msa0607610:three_prime_UTR | 50.0% |
| !! | AAAGAGCGGCGGATTGAATG+AGG | - | chr4_2:54533687-54533706 | Msa0607610:three_prime_UTR | 50.0% |
| ! | GTTGTTGTTGTTGGCGCAAG+CGG | - | chr4_2:54533711-54533730 | Msa0607610:three_prime_UTR | 50.0% |
| ! | TTGTTGTTGTTGGCGCAAGC+GGG | - | chr4_2:54533712-54533731 | Msa0607610:three_prime_UTR | 50.0% |
| ATAGCCGAAGCTAAGTCAGC+CGG | + | chr4_2:54533757-54533776 | None:intergenic | 50.0% | |
| AACCTCTCAACTACAGACGC+CGG | + | chr4_2:54533796-54533815 | None:intergenic | 50.0% | |
| AGAAGTCTCCGTTTATGCGG+TGG | - | chr4_2:54533827-54533846 | Msa0607610:intron | 50.0% | |
| ATGCGGTGGTTGCTTCAGTT+TGG | - | chr4_2:54533841-54533860 | Msa0607610:intron | 50.0% | |
| GTTGGATTTGAATGCGGCGT+CGG | - | chr4_2:54533910-54533929 | Msa0607610:CDS | 50.0% | |
| GTAGCATTGCACTGCAGTTG+GGG | + | chr4_2:54534423-54534442 | None:intergenic | 50.0% | |
| CAGTAGCATTGCACTGCAGT+TGG | + | chr4_2:54534425-54534444 | None:intergenic | 50.0% | |
| GTGGAGGCAACTTGAAACCA+TGG | - | chr4_2:54534458-54534477 | Msa0607610:intron | 50.0% | |
| GAGGCAACTTGAAACCATGG+AGG | - | chr4_2:54534461-54534480 | Msa0607610:intron | 50.0% | |
| ATACTCAGCAGCAGTCTAGG+GGG | + | chr4_2:54534701-54534720 | None:intergenic | 50.0% | |
| CATACTCAGCAGCAGTCTAG+GGG | + | chr4_2:54534702-54534721 | None:intergenic | 50.0% | |
| GGAAATTGTGTTCGCCGATG+TGG | - | chr4_2:54534753-54534772 | Msa0607610:intron | 50.0% | |
| CTAAGAGAAACCGTAGGTGC+AGG | + | chr4_2:54535500-54535519 | None:intergenic | 50.0% | |
| GGTGGTCTAAGAGAAACCGT+AGG | + | chr4_2:54535506-54535525 | None:intergenic | 50.0% | |
| CTGCCCAGATAATGCATTCC+AGG | - | chr4_2:54535568-54535587 | Msa0607610:intron | 50.0% | |
| GGTTACCTTGCACAGCGTAA+TGG | - | chr4_2:54535830-54535849 | Msa0607610:intron | 50.0% | |
| ! | GGGTCCAAGCTTTTTGCAGT+TGG | - | chr4_2:54535851-54535870 | Msa0607610:intron | 50.0% |
| AGTTGGATCTGCTTCGTCAC+TGG | - | chr4_2:54535868-54535887 | Msa0607610:intron | 50.0% | |
| !! | TGGCAGTTTCTAGCAACCTC+AGG | - | chr4_2:54536870-54536889 | Msa0607610:intron | 50.0% |
| ! | AGCTTGTGCTGGTGCAACAA+AGG | + | chr4_2:54537225-54537244 | None:intergenic | 50.0% |
| !! | GATGGGTGGATTATGCACGT+TGG | - | chr4_2:54537394-54537413 | Msa0607610:CDS | 50.0% |
| ! | AAGGAATGGGGATGGGTTTC+AGG | + | chr4_2:54537787-54537806 | None:intergenic | 50.0% |
| CTAGAGCAAGGAATGGGGAT+GGG | + | chr4_2:54537794-54537813 | None:intergenic | 50.0% | |
| CTGCATCTCATGCTAGAGCA+AGG | + | chr4_2:54537806-54537825 | None:intergenic | 50.0% | |
| CTTGCTCTAGCATGAGATGC+AGG | - | chr4_2:54537804-54537823 | Msa0607610:five_prime_UTR | 50.0% | |
| GGGAGGGATTTAGGAGTGGA+AGG | + | chr4_2:54533442-54533461 | None:intergenic | 55.0% | |
| ATACGGAGACGGAGGGAAAG+TGG | + | chr4_2:54533481-54533500 | None:intergenic | 55.0% | |
| AGGAGTGATACGGAGACGGA+GGG | + | chr4_2:54533488-54533507 | None:intergenic | 55.0% | |
| AAGGAGTGATACGGAGACGG+AGG | + | chr4_2:54533489-54533508 | None:intergenic | 55.0% | |
| TGAAGAGAGGATCTGTGCGG+TGG | + | chr4_2:54533537-54533556 | None:intergenic | 55.0% | |
| TCCGCCGTACCTTCTTTCGA+CGG | - | chr4_2:54533574-54533593 | Msa0607610:three_prime_UTR | 55.0% | |
| ! | ACCGTCGAAAGAAGGTACGG+CGG | + | chr4_2:54533578-54533597 | None:intergenic | 55.0% |
| GACGGTGGAGATTCATTCGG+AGG | - | chr4_2:54533592-54533611 | Msa0607610:three_prime_UTR | 55.0% | |
| GATTCATTCGGAGGACACGG+TGG | - | chr4_2:54533601-54533620 | Msa0607610:three_prime_UTR | 55.0% | |
| !! | AATGACGGACATGGACACGG+AGG | - | chr4_2:54533640-54533659 | Msa0607610:three_prime_UTR | 55.0% |
| GACGGAGAAAGCAATGACGG+AGG | - | chr4_2:54533664-54533683 | Msa0607610:three_prime_UTR | 55.0% | |
| ! | AATGACGGAGGAAAGAGCGG+CGG | - | chr4_2:54533676-54533695 | Msa0607610:three_prime_UTR | 55.0% |
| ! | TGTTGTTGTTGGCGCAAGCG+GGG | - | chr4_2:54533713-54533732 | Msa0607610:exon | 55.0% |
| !! | TGTGCCGGCTGACTTAGCTT+CGG | - | chr4_2:54533750-54533769 | Msa0607610:intron | 55.0% |
| TTCCGGCGTCTGTAGTTGAG+AGG | - | chr4_2:54533791-54533810 | Msa0607610:intron | 55.0% | |
| CGGTGGTTGCTTCAGTTTGG+TGG | - | chr4_2:54533844-54533863 | Msa0607610:intron | 55.0% | |
| CTGCTGCTGAGTATGATCGC+CGG | - | chr4_2:54534707-54534726 | Msa0607610:intron | 55.0% | |
| CACCACTTGGAGTCAGTGCA+GGG | - | chr4_2:54535522-54535541 | Msa0607610:intron | 55.0% | |
| ACCACTTGGAGTCAGTGCAG+GGG | - | chr4_2:54535523-54535542 | Msa0607610:intron | 55.0% | |
| CAGAGAGAGCAACCTGTGGA+AGG | + | chr4_2:54535689-54535708 | None:intergenic | 55.0% | |
| CTTCCACAGGTTGCTCTCTC+TGG | - | chr4_2:54535687-54535706 | Msa0607610:intron | 55.0% | |
| GATCCAGAGAGAGCAACCTG+TGG | + | chr4_2:54535693-54535712 | None:intergenic | 55.0% | |
| TGGACCCATTACGCTGTGCA+AGG | + | chr4_2:54535838-54535857 | None:intergenic | 55.0% | |
| GCTAGAGCAAGGAATGGGGA+TGG | + | chr4_2:54537795-54537814 | None:intergenic | 55.0% | |
| TGCGCACACGACTCACTCAG+GGG | + | chr4_2:54533332-54533351 | None:intergenic | 60.0% | |
| CTGCGCACACGACTCACTCA+GGG | + | chr4_2:54533333-54533352 | None:intergenic | 60.0% | |
| GGAGACGGAGGGAAAGTGGA+GGG | + | chr4_2:54533477-54533496 | None:intergenic | 60.0% | |
| GTACGGCGGAATCGGTGGAA+TGG | + | chr4_2:54533564-54533583 | None:intergenic | 60.0% | |
| ! | AGAAGGTACGGCGGAATCGG+TGG | + | chr4_2:54533569-54533588 | None:intergenic | 60.0% |
| GCCGTACCTTCTTTCGACGG+TGG | - | chr4_2:54533577-54533596 | Msa0607610:three_prime_UTR | 60.0% | |
| GGAGGACACGGTGGAGATGA+CGG | - | chr4_2:54533610-54533629 | Msa0607610:three_prime_UTR | 60.0% | |
| GGACATGGACACGGAGGAGA+CGG | - | chr4_2:54533646-54533665 | Msa0607610:three_prime_UTR | 60.0% | |
| ! | GAGGTCGTTGGAGAGTGTGC+CGG | - | chr4_2:54533735-54533754 | Msa0607610:CDS | 60.0% |
| TGCGGATGCGAAGCGCATTG+TGG | - | chr4_2:54534133-54534152 | Msa0607610:intron | 60.0% | |
| !! | CCTGCACTGACTCCAAGTGG+TGG | + | chr4_2:54535524-54535543 | None:intergenic | 60.0% |
| CCACCACTTGGAGTCAGTGC+AGG | - | chr4_2:54535521-54535540 | Msa0607610:intron | 60.0% | |
| GCTGCGCACACGACTCACTC+AGG | + | chr4_2:54533334-54533353 | None:intergenic | 65.0% | |
| CGGAGACGGAGGGAAAGTGG+AGG | + | chr4_2:54533478-54533497 | None:intergenic | 65.0% | |
| TGTTGTTGGCGCAAGCGGGG+AGG | - | chr4_2:54533716-54533735 | Msa0607610:exon | 65.0% | |
| !!! | CGGCGTCGGCGTTTTCACCA+AGG | - | chr4_2:54533924-54533943 | Msa0607610:CDS | 65.0% |
| !! | GCCCCTGCACTGACTCCAAG+TGG | + | chr4_2:54535527-54535546 | None:intergenic | 65.0% |
| GGCGCAAGCGGGGAGGTCGT+TGG | - | chr4_2:54533723-54533742 | Msa0607610:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 54533299 | 54537864 | 54533299 | ID=Msa0607610;Name=Msa0607610 |
| chr4_2 | mRNA | 54533299 | 54537864 | 54533299 | ID=Msa0607610-mRNA-1;Parent=Msa0607610;Name=Msa0607610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=80|1|1|1|1|1|8|433|389 |
| chr4_2 | exon | 54533299 | 54533768 | 54533299 | ID=Msa0607610-mRNA-1:exon:13694;Parent=Msa0607610-mRNA-1 |
| chr4_2 | exon | 54533859 | 54533984 | 54533859 | ID=Msa0607610-mRNA-1:exon:13693;Parent=Msa0607610-mRNA-1 |
| chr4_2 | exon | 54534272 | 54534411 | 54534272 | ID=Msa0607610-mRNA-1:exon:13692;Parent=Msa0607610-mRNA-1 |
| chr4_2 | exon | 54535274 | 54535318 | 54535274 | ID=Msa0607610-mRNA-1:exon:13691;Parent=Msa0607610-mRNA-1 |
| chr4_2 | exon | 54535414 | 54535467 | 54535414 | ID=Msa0607610-mRNA-1:exon:13690;Parent=Msa0607610-mRNA-1 |
| chr4_2 | exon | 54535574 | 54535705 | 54535574 | ID=Msa0607610-mRNA-1:exon:13689;Parent=Msa0607610-mRNA-1 |
| chr4_2 | exon | 54536389 | 54536457 | 54536389 | ID=Msa0607610-mRNA-1:exon:13688;Parent=Msa0607610-mRNA-1 |
| chr4_2 | exon | 54537218 | 54537864 | 54537218 | ID=Msa0607610-mRNA-1:exon:13687;Parent=Msa0607610-mRNA-1 |
| chr4_2 | five_prime_UTR | 54537785 | 54537864 | 54537785 | ID=Msa0607610-mRNA-1:five_prime_utr;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54537218 | 54537784 | 54537218 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54536389 | 54536457 | 54536389 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54535574 | 54535705 | 54535574 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54535414 | 54535467 | 54535414 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54535274 | 54535318 | 54535274 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54534272 | 54534411 | 54534272 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54533859 | 54533984 | 54533859 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | CDS | 54533732 | 54533768 | 54533732 | ID=Msa0607610-mRNA-1:cds;Parent=Msa0607610-mRNA-1 |
| chr4_2 | three_prime_UTR | 54533299 | 54533731 | 54533299 | ID=Msa0607610-mRNA-1:three_prime_utr;Parent=Msa0607610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
