Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909130 | XP_003628192.1 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 1.55e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909130 | sp|Q941R6|MLP31_ARATH | 38.000 | 150 | 89 | 4 | 3 | 149 | 20 | 168 | 2.37e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0909130 | Msa0909160 | 0.845740 | 3.364297e-59 | -8.615850e-47 |
| Msa0909130 | Msa1242200 | 0.801509 | 8.705633e-49 | -8.615850e-47 |
| Msa0909130 | Msa1283850 | 0.915190 | 7.900363e-85 | -8.615850e-47 |
| Msa0909130 | Msa1322900 | 0.942378 | 7.993475e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909130 | MtrunA17_Chr8g0355661 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 1.42e-108 | 305 |
| Msa0909130 | MtrunA17_Chr8g0355741 | 79.618 | 157 | 31 | 1 | 1 | 156 | 1 | 157 | 3.47e-89 | 256 |
| Msa0909130 | MtrunA17_Chr8g0355721 | 77.070 | 157 | 34 | 2 | 1 | 156 | 1 | 156 | 3.70e-87 | 251 |
| Msa0909130 | MtrunA17_Chr8g0355811 | 73.885 | 157 | 39 | 2 | 1 | 156 | 1 | 156 | 2.00e-83 | 242 |
| Msa0909130 | MtrunA17_Chr8g0355791 | 73.885 | 157 | 39 | 2 | 1 | 156 | 1 | 156 | 1.91e-80 | 234 |
| Msa0909130 | MtrunA17_Chr8g0355781 | 73.026 | 152 | 40 | 1 | 1 | 151 | 1 | 152 | 2.20e-80 | 234 |
| Msa0909130 | MtrunA17_Chr8g0355801 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 3.57e-79 | 231 |
| Msa0909130 | MtrunA17_Chr8g0355641 | 69.872 | 156 | 46 | 1 | 1 | 155 | 1 | 156 | 4.26e-79 | 231 |
| Msa0909130 | MtrunA17_Chr8g0355821 | 70.323 | 155 | 44 | 2 | 1 | 154 | 1 | 154 | 8.59e-79 | 230 |
| Msa0909130 | MtrunA17_Chr8g0355771 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 1.45e-78 | 229 |
| Msa0909130 | MtrunA17_Chr8g0355761 | 71.711 | 152 | 42 | 1 | 1 | 151 | 1 | 152 | 2.56e-78 | 229 |
| Msa0909130 | MtrunA17_Chr1g0160371 | 41.176 | 153 | 86 | 3 | 1 | 150 | 1 | 152 | 6.57e-38 | 126 |
| Msa0909130 | MtrunA17_Chr1g0160381 | 38.562 | 153 | 90 | 3 | 1 | 150 | 5 | 156 | 7.49e-37 | 124 |
| Msa0909130 | MtrunA17_Chr1g0160391 | 40.127 | 157 | 83 | 6 | 1 | 148 | 1 | 155 | 1.64e-29 | 105 |
| Msa0909130 | MtrunA17_Chr1g0160801 | 38.776 | 147 | 82 | 4 | 7 | 151 | 7 | 147 | 3.58e-28 | 101 |
| Msa0909130 | MtrunA17_Chr8g0339261 | 35.862 | 145 | 89 | 4 | 6 | 148 | 8 | 150 | 3.37e-26 | 97.1 |
| Msa0909130 | MtrunA17_Chr1g0160351 | 40.860 | 93 | 52 | 2 | 61 | 150 | 1 | 93 | 9.66e-20 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909130 | AT1G70840.1 | 38.000 | 150 | 89 | 4 | 3 | 149 | 20 | 168 | 2.40e-26 | 98.2 |
| Msa0909130 | AT5G28010.1 | 36.667 | 150 | 91 | 4 | 3 | 149 | 15 | 163 | 2.54e-26 | 98.2 |
| Msa0909130 | AT5G28010.2 | 36.667 | 150 | 91 | 4 | 3 | 149 | 15 | 163 | 2.54e-26 | 98.2 |
| Msa0909130 | AT1G70830.5 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 6.25e-26 | 97.1 |
| Msa0909130 | AT1G70830.3 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 1.22e-25 | 97.1 |
| Msa0909130 | AT1G70890.1 | 37.333 | 150 | 90 | 4 | 3 | 149 | 7 | 155 | 2.72e-25 | 95.1 |
| Msa0909130 | AT1G70830.2 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 5.35e-25 | 96.7 |
| Msa0909130 | AT1G70830.1 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 1.60e-24 | 97.1 |
| Msa0909130 | AT1G70830.1 | 38.000 | 150 | 89 | 4 | 3 | 149 | 184 | 332 | 1.28e-23 | 94.7 |
| Msa0909130 | AT1G70830.4 | 38.000 | 150 | 89 | 4 | 3 | 149 | 137 | 285 | 3.13e-24 | 95.5 |
| Msa0909130 | AT1G70830.4 | 35.484 | 93 | 58 | 2 | 59 | 149 | 31 | 123 | 8.87e-12 | 61.6 |
| Msa0909130 | AT5G28000.1 | 35.333 | 150 | 93 | 4 | 3 | 149 | 13 | 161 | 4.94e-23 | 89.4 |
| Msa0909130 | AT1G23120.1 | 28.859 | 149 | 102 | 2 | 1 | 149 | 1 | 145 | 9.00e-23 | 88.2 |
| Msa0909130 | AT1G70850.2 | 36.667 | 150 | 91 | 4 | 3 | 149 | 9 | 157 | 1.27e-22 | 90.1 |
| Msa0909130 | AT1G23120.2 | 29.371 | 143 | 97 | 2 | 7 | 149 | 57 | 195 | 2.19e-22 | 88.6 |
| Msa0909130 | AT1G70850.3 | 36.667 | 150 | 91 | 4 | 3 | 149 | 9 | 157 | 3.88e-22 | 90.5 |
| Msa0909130 | AT1G70850.3 | 36.429 | 140 | 85 | 4 | 13 | 149 | 175 | 313 | 2.05e-20 | 85.9 |
| Msa0909130 | AT1G70850.1 | 36.667 | 150 | 91 | 4 | 3 | 149 | 9 | 157 | 3.88e-22 | 90.5 |
| Msa0909130 | AT1G70850.1 | 36.429 | 140 | 85 | 4 | 13 | 149 | 175 | 313 | 2.05e-20 | 85.9 |
| Msa0909130 | AT1G70870.1 | 38.542 | 96 | 59 | 0 | 55 | 150 | 43 | 138 | 3.17e-21 | 84.0 |
| Msa0909130 | AT1G14930.1 | 30.769 | 156 | 106 | 2 | 1 | 155 | 1 | 155 | 3.20e-21 | 84.7 |
| Msa0909130 | AT4G23670.1 | 32.895 | 152 | 100 | 2 | 1 | 151 | 1 | 151 | 4.97e-21 | 84.0 |
| Msa0909130 | AT1G23130.1 | 31.544 | 149 | 99 | 3 | 3 | 149 | 10 | 157 | 9.80e-21 | 83.6 |
| Msa0909130 | AT2G01520.1 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 6.05e-20 | 81.3 |
| Msa0909130 | AT4G14060.1 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 1.37e-18 | 77.8 |
| Msa0909130 | AT2G01530.1 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 3.50e-18 | 76.6 |
| Msa0909130 | AT1G70880.1 | 30.667 | 150 | 100 | 4 | 3 | 149 | 8 | 156 | 3.58e-18 | 76.6 |
| Msa0909130 | AT1G14940.1 | 28.846 | 156 | 109 | 2 | 1 | 155 | 1 | 155 | 4.13e-18 | 76.6 |
| Msa0909130 | AT4G23680.1 | 29.139 | 151 | 105 | 2 | 1 | 150 | 1 | 150 | 1.37e-17 | 75.1 |
| Msa0909130 | AT1G30990.1 | 30.000 | 150 | 102 | 3 | 1 | 149 | 1 | 148 | 1.68e-17 | 74.7 |
| Msa0909130 | AT1G14950.1 | 28.846 | 156 | 109 | 2 | 1 | 155 | 1 | 155 | 5.45e-17 | 73.6 |
| Msa0909130 | AT1G35260.1 | 30.137 | 146 | 97 | 4 | 7 | 149 | 6 | 149 | 9.98e-17 | 72.8 |
| Msa0909130 | AT1G14960.1 | 28.477 | 151 | 106 | 2 | 1 | 150 | 1 | 150 | 5.71e-15 | 68.2 |
| Msa0909130 | AT3G26450.1 | 28.105 | 153 | 107 | 3 | 1 | 151 | 1 | 152 | 6.09e-15 | 68.2 |
| Msa0909130 | AT3G26460.1 | 27.451 | 153 | 108 | 3 | 1 | 151 | 1 | 152 | 6.65e-14 | 65.5 |
| Msa0909130 | AT1G35310.1 | 27.338 | 139 | 97 | 4 | 13 | 149 | 12 | 148 | 1.47e-13 | 64.7 |
| Msa0909130 | AT1G24020.1 | 30.263 | 152 | 103 | 3 | 1 | 150 | 1 | 151 | 2.87e-12 | 61.2 |
| Msa0909130 | AT1G24020.2 | 30.263 | 152 | 103 | 3 | 1 | 150 | 1 | 151 | 2.87e-12 | 61.2 |
| Msa0909130 | AT1G14940.2 | 25.641 | 156 | 98 | 2 | 1 | 155 | 1 | 139 | 6.05e-11 | 57.4 |
Find 30 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 6_2:+10315454 | None:intergenic |
| AAGTTCAGTACTAAGTTTAC+CGG | 0.399540 | 6_2:+10315565 | None:intergenic |
| AACATTAGCGAAAGAGTTCA+TGG | 0.404572 | 6_2:-10315479 | Msa0909130:CDS |
| AACAAGTCCATCCAGCCATT+TGG | 0.409540 | 6_2:+10314903 | None:intergenic |
| ATCATTGAAGTAATTGATAA+TGG | 0.438898 | 6_2:-10314990 | Msa0909130:CDS |
| ATGGCAGTGGAGCTGCAAAA+TGG | 0.452179 | 6_2:-10314965 | Msa0909130:CDS |
| AAACTCACTTTCAAGCTCTT+CGG | 0.455962 | 6_2:-10315050 | Msa0909130:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 6_2:-10315410 | Msa0909130:intron |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 6_2:-10315451 | Msa0909130:CDS |
| AGACATTGATGAGCACTATA+AGG | 0.495099 | 6_2:-10315024 | Msa0909130:CDS |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 6_2:-10315435 | Msa0909130:CDS |
| ATATTGACCCTCCAAATGGC+TGG | 0.527845 | 6_2:-10314914 | Msa0909130:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.539495 | 6_2:-10314918 | Msa0909130:CDS |
| GGTAAACTTAGTACTGAACT+TGG | 0.549891 | 6_2:-10315563 | Msa0909130:CDS |
| AAGTCCATCCAGCCATTTGG+AGG | 0.551025 | 6_2:+10314906 | None:intergenic |
| CTCACTTTCAAGCTCTTCGG+TGG | 0.553344 | 6_2:-10315047 | Msa0909130:CDS |
| TGACATCACAACAGATGGTA+AGG | 0.554203 | 6_2:-10315117 | Msa0909130:intron |
| CATTCAGAAATGGTGCTCGC+CGG | 0.555555 | 6_2:-10315584 | None:intergenic |
| ATTGATAATGGTGATGGCAG+TGG | 0.556824 | 6_2:-10314978 | Msa0909130:CDS |
| TGACCCTCCAAATGGCTGGA+TGG | 0.557517 | 6_2:-10314910 | Msa0909130:CDS |
| ATTGATCTTCTCATATTCAA+CGG | 0.576809 | 6_2:+10314941 | None:intergenic |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 6_2:-10314861 | Msa0909130:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 6_2:-10315424 | Msa0909130:CDS |
| GAAGTAATTGATAATGGTGA+TGG | 0.618480 | 6_2:-10314984 | Msa0909130:CDS |
| TAGTTTGAAGAACTTGTCGA+CGG | 0.618944 | 6_2:+10315529 | None:intergenic |
| GTAAACTTAGTACTGAACTT+GGG | 0.625486 | 6_2:-10315562 | Msa0909130:CDS |
| AGTTTGAAGAACTTGTCGAC+GGG | 0.627390 | 6_2:+10315530 | None:intergenic |
| CATGGTGCCAAACTTCATGA+AGG | 0.632424 | 6_2:-10315461 | Msa0909130:CDS |
| AGTCCATCCAGCCATTTGGA+GGG | 0.644461 | 6_2:+10314907 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.699788 | 6_2:-10314937 | Msa0909130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATAAACAAGATGATA+TGG | + | chr6_2:10315065-10315084 | None:intergenic | 15.0% |
| !! | ATAGAGTTATGAAAAATATA+TGG | + | chr6_2:10315244-10315263 | None:intergenic | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+TGG | - | chr6_2:10315264-10315283 | Msa0909130:intron | 15.0% |
| !! | TATAAATAAACAAGATGATA+TGG | + | chr6_2:10315065-10315084 | None:intergenic | 15.0% |
| !! | ATAGAGTTATGAAAAATATA+TGG | + | chr6_2:10315244-10315263 | None:intergenic | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+TGG | - | chr6_2:10315264-10315283 | Msa0909130:intron | 15.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | + | chr6_2:10315095-10315114 | None:intergenic | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | - | chr6_2:10315096-10315115 | Msa0909130:CDS | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | - | chr6_2:10315097-10315116 | Msa0909130:CDS | 20.0% |
| !! | CATAATCTTCTTATAAAGTA+TGG | + | chr6_2:10315124-10315143 | None:intergenic | 20.0% |
| !! | ACTTTATCTTTATCATCTTT+AGG | + | chr6_2:10315148-10315167 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | - | chr6_2:10315427-10315446 | Msa0909130:CDS | 20.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | + | chr6_2:10315095-10315114 | None:intergenic | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | - | chr6_2:10315096-10315115 | Msa0909130:CDS | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | - | chr6_2:10315097-10315116 | Msa0909130:CDS | 20.0% |
| !! | CATAATCTTCTTATAAAGTA+TGG | + | chr6_2:10315124-10315143 | None:intergenic | 20.0% |
| !! | ACTTTATCTTTATCATCTTT+AGG | + | chr6_2:10315148-10315167 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | - | chr6_2:10315427-10315446 | Msa0909130:CDS | 20.0% |
| ! | AATAAACAAGATGATATGGA+GGG | + | chr6_2:10315061-10315080 | None:intergenic | 25.0% |
| ! | AAATAAACAAGATGATATGG+AGG | + | chr6_2:10315062-10315081 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | + | chr6_2:10315479-10315498 | None:intergenic | 25.0% |
| ! | AATAAACAAGATGATATGGA+GGG | + | chr6_2:10315061-10315080 | None:intergenic | 25.0% |
| ! | AAATAAACAAGATGATATGG+AGG | + | chr6_2:10315062-10315081 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | + | chr6_2:10315479-10315498 | None:intergenic | 25.0% |
| AAGTTCAGTACTAAGTTTAC+CGG | + | chr6_2:10314855-10314874 | None:intergenic | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | - | chr6_2:10314855-10314874 | Msa0909130:CDS | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | - | chr6_2:10315433-10315452 | Msa0909130:CDS | 30.0% |
| TGAATATGAGAAGATCAATG+AGG | - | chr6_2:10315480-10315499 | Msa0909130:CDS | 30.0% | |
| AAGTTCAGTACTAAGTTTAC+CGG | + | chr6_2:10314855-10314874 | None:intergenic | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | - | chr6_2:10314855-10314874 | Msa0909130:CDS | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | - | chr6_2:10315433-10315452 | Msa0909130:CDS | 30.0% |
| TGAATATGAGAAGATCAATG+AGG | - | chr6_2:10315480-10315499 | Msa0909130:CDS | 30.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | - | chr6_2:10314854-10314873 | Msa0909130:CDS | 35.0% |
| TAGTTTGAAGAACTTGTCGA+CGG | + | chr6_2:10314891-10314910 | None:intergenic | 35.0% | |
| AACATTAGCGAAAGAGTTCA+TGG | - | chr6_2:10314938-10314957 | Msa0909130:CDS | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | + | chr6_2:10314966-10314985 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | chr6_2:10314966-10314985 | Msa0909130:CDS | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | - | chr6_2:10315007-10315026 | Msa0909130:CDS | 35.0% | |
| AAACTCACTTTCAAGCTCTT+CGG | - | chr6_2:10315367-10315386 | Msa0909130:intron | 35.0% | |
| AGACATTGATGAGCACTATA+AGG | - | chr6_2:10315393-10315412 | Msa0909130:intron | 35.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | - | chr6_2:10314854-10314873 | Msa0909130:CDS | 35.0% |
| TAGTTTGAAGAACTTGTCGA+CGG | + | chr6_2:10314891-10314910 | None:intergenic | 35.0% | |
| AACATTAGCGAAAGAGTTCA+TGG | - | chr6_2:10314938-10314957 | Msa0909130:CDS | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | + | chr6_2:10314966-10314985 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | chr6_2:10314966-10314985 | Msa0909130:CDS | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | - | chr6_2:10315007-10315026 | Msa0909130:CDS | 35.0% | |
| AAACTCACTTTCAAGCTCTT+CGG | - | chr6_2:10315367-10315386 | Msa0909130:intron | 35.0% | |
| AGACATTGATGAGCACTATA+AGG | - | chr6_2:10315393-10315412 | Msa0909130:intron | 35.0% | |
| AGTTTGAAGAACTTGTCGAC+GGG | + | chr6_2:10314890-10314909 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | - | chr6_2:10314982-10315001 | Msa0909130:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | - | chr6_2:10314993-10315012 | Msa0909130:CDS | 40.0% |
| ACCATCTGTTGTGATGTCAA+GGG | + | chr6_2:10315299-10315318 | None:intergenic | 40.0% | |
| TACCATCTGTTGTGATGTCA+AGG | + | chr6_2:10315300-10315319 | None:intergenic | 40.0% | |
| TGACATCACAACAGATGGTA+AGG | - | chr6_2:10315300-10315319 | Msa0909130:intron | 40.0% | |
| !! | ATTGATAATGGTGATGGCAG+TGG | - | chr6_2:10315439-10315458 | Msa0909130:CDS | 40.0% |
| GTTGATGCTCATCTTGTCAA+AGG | - | chr6_2:10315556-10315575 | Msa0909130:CDS | 40.0% | |
| AGTTTGAAGAACTTGTCGAC+GGG | + | chr6_2:10314890-10314909 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | - | chr6_2:10314982-10315001 | Msa0909130:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | - | chr6_2:10314993-10315012 | Msa0909130:CDS | 40.0% |
| ACCATCTGTTGTGATGTCAA+GGG | + | chr6_2:10315299-10315318 | None:intergenic | 40.0% | |
| TACCATCTGTTGTGATGTCA+AGG | + | chr6_2:10315300-10315319 | None:intergenic | 40.0% | |
| TGACATCACAACAGATGGTA+AGG | - | chr6_2:10315300-10315319 | Msa0909130:intron | 40.0% | |
| !! | ATTGATAATGGTGATGGCAG+TGG | - | chr6_2:10315439-10315458 | Msa0909130:CDS | 40.0% |
| GTTGATGCTCATCTTGTCAA+AGG | - | chr6_2:10315556-10315575 | Msa0909130:CDS | 40.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | - | chr6_2:10314956-10314975 | Msa0909130:CDS | 45.0% |
| GAGGATATTGACCCTCCAAA+TGG | - | chr6_2:10315499-10315518 | Msa0909130:CDS | 45.0% | |
| ATATTGACCCTCCAAATGGC+TGG | - | chr6_2:10315503-10315522 | Msa0909130:CDS | 45.0% | |
| AACAAGTCCATCCAGCCATT+TGG | + | chr6_2:10315517-10315536 | None:intergenic | 45.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | - | chr6_2:10314956-10314975 | Msa0909130:CDS | 45.0% |
| GAGGATATTGACCCTCCAAA+TGG | - | chr6_2:10315499-10315518 | Msa0909130:CDS | 45.0% | |
| ATATTGACCCTCCAAATGGC+TGG | - | chr6_2:10315503-10315522 | Msa0909130:CDS | 45.0% | |
| AACAAGTCCATCCAGCCATT+TGG | + | chr6_2:10315517-10315536 | None:intergenic | 45.0% | |
| GCCCTTGACATCACAACAGA+TGG | - | chr6_2:10315295-10315314 | Msa0909130:intron | 50.0% | |
| CTCACTTTCAAGCTCTTCGG+TGG | - | chr6_2:10315370-10315389 | Msa0909130:intron | 50.0% | |
| ATGGCAGTGGAGCTGCAAAA+TGG | - | chr6_2:10315452-10315471 | Msa0909130:CDS | 50.0% | |
| AGTCCATCCAGCCATTTGGA+GGG | + | chr6_2:10315513-10315532 | None:intergenic | 50.0% | |
| AAGTCCATCCAGCCATTTGG+AGG | + | chr6_2:10315514-10315533 | None:intergenic | 50.0% | |
| GCCCTTGACATCACAACAGA+TGG | - | chr6_2:10315295-10315314 | Msa0909130:intron | 50.0% | |
| CTCACTTTCAAGCTCTTCGG+TGG | - | chr6_2:10315370-10315389 | Msa0909130:intron | 50.0% | |
| ATGGCAGTGGAGCTGCAAAA+TGG | - | chr6_2:10315452-10315471 | Msa0909130:CDS | 50.0% | |
| AGTCCATCCAGCCATTTGGA+GGG | + | chr6_2:10315513-10315532 | None:intergenic | 50.0% | |
| AAGTCCATCCAGCCATTTGG+AGG | + | chr6_2:10315514-10315533 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTGGA+TGG | - | chr6_2:10315507-10315526 | Msa0909130:CDS | 55.0% | |
| TGACCCTCCAAATGGCTGGA+TGG | - | chr6_2:10315507-10315526 | Msa0909130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 10314842 | 10315597 | 10314842 | ID=Msa0909130;Name=Msa0909130 |
| chr6_2 | mRNA | 10314842 | 10315597 | 10314842 | ID=Msa0909130-mRNA-1;Parent=Msa0909130;Name=Msa0909130-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|156 |
| chr6_2 | exon | 10315411 | 10315597 | 10315411 | ID=Msa0909130-mRNA-1:exon:2654;Parent=Msa0909130-mRNA-1 |
| chr6_2 | exon | 10314842 | 10315125 | 10314842 | ID=Msa0909130-mRNA-1:exon:2653;Parent=Msa0909130-mRNA-1 |
| chr6_2 | CDS | 10315411 | 10315597 | 10315411 | ID=Msa0909130-mRNA-1:cds;Parent=Msa0909130-mRNA-1 |
| chr6_2 | CDS | 10314842 | 10315125 | 10314842 | ID=Msa0909130-mRNA-1:cds;Parent=Msa0909130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
