Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283850 | sp|Q941R6|MLP31_ARATH | 38.000 | 150 | 89 | 4 | 3 | 149 | 20 | 168 | 2.81e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283850 | G7L7S7 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 6.26e-106 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1242200 | Msa1283850 | 0.818525 | 1.873157e-52 | -8.615850e-47 |
| Msa1283850 | Msa1322900 | 0.922669 | 7.276482e-89 | -8.615850e-47 |
| Msa0909130 | Msa1283850 | 0.915190 | 7.900363e-85 | -8.615850e-47 |
| Msa0909160 | Msa1283850 | 0.817301 | 3.539921e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283850 | MtrunA17_Chr8g0355661 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 1.21e-109 | 308 |
| Msa1283850 | MtrunA17_Chr8g0355741 | 79.618 | 157 | 31 | 1 | 1 | 156 | 1 | 157 | 1.63e-89 | 257 |
| Msa1283850 | MtrunA17_Chr8g0355721 | 77.707 | 157 | 33 | 2 | 1 | 156 | 1 | 156 | 1.96e-88 | 254 |
| Msa1283850 | MtrunA17_Chr8g0355811 | 73.885 | 157 | 39 | 2 | 1 | 156 | 1 | 156 | 1.52e-83 | 242 |
| Msa1283850 | MtrunA17_Chr8g0355781 | 73.026 | 152 | 40 | 1 | 1 | 151 | 1 | 152 | 9.26e-81 | 235 |
| Msa1283850 | MtrunA17_Chr8g0355791 | 73.885 | 157 | 39 | 2 | 1 | 156 | 1 | 156 | 2.28e-80 | 234 |
| Msa1283850 | MtrunA17_Chr8g0355641 | 69.872 | 156 | 46 | 1 | 1 | 155 | 1 | 156 | 2.26e-79 | 232 |
| Msa1283850 | MtrunA17_Chr8g0355801 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 3.06e-79 | 231 |
| Msa1283850 | MtrunA17_Chr8g0355761 | 71.711 | 152 | 42 | 1 | 1 | 151 | 1 | 152 | 6.88e-79 | 230 |
| Msa1283850 | MtrunA17_Chr8g0355821 | 70.323 | 155 | 44 | 2 | 1 | 154 | 1 | 154 | 8.13e-79 | 230 |
| Msa1283850 | MtrunA17_Chr8g0355771 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 1.29e-78 | 230 |
| Msa1283850 | MtrunA17_Chr1g0160371 | 41.176 | 153 | 86 | 3 | 1 | 150 | 1 | 152 | 5.96e-38 | 127 |
| Msa1283850 | MtrunA17_Chr1g0160381 | 38.562 | 153 | 90 | 3 | 1 | 150 | 5 | 156 | 6.09e-37 | 124 |
| Msa1283850 | MtrunA17_Chr1g0160391 | 40.127 | 157 | 83 | 6 | 1 | 148 | 1 | 155 | 5.85e-30 | 107 |
| Msa1283850 | MtrunA17_Chr1g0160801 | 38.776 | 147 | 82 | 4 | 7 | 151 | 7 | 147 | 3.78e-28 | 101 |
| Msa1283850 | MtrunA17_Chr8g0339261 | 35.862 | 145 | 89 | 4 | 6 | 148 | 8 | 150 | 3.16e-26 | 97.1 |
| Msa1283850 | MtrunA17_Chr1g0160351 | 40.860 | 93 | 52 | 2 | 61 | 150 | 1 | 93 | 3.57e-20 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283850 | AT5G28010.1 | 36.667 | 150 | 91 | 4 | 3 | 149 | 15 | 163 | 1.27e-26 | 99.0 |
| Msa1283850 | AT5G28010.2 | 36.667 | 150 | 91 | 4 | 3 | 149 | 15 | 163 | 1.27e-26 | 99.0 |
| Msa1283850 | AT1G70840.1 | 38.000 | 150 | 89 | 4 | 3 | 149 | 20 | 168 | 2.86e-26 | 98.2 |
| Msa1283850 | AT1G70830.5 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 7.19e-26 | 97.1 |
| Msa1283850 | AT1G70830.3 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 1.29e-25 | 97.1 |
| Msa1283850 | AT1G70890.1 | 37.333 | 150 | 90 | 4 | 3 | 149 | 7 | 155 | 2.97e-25 | 95.1 |
| Msa1283850 | AT1G70830.2 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 6.08e-25 | 96.7 |
| Msa1283850 | AT1G70830.1 | 38.667 | 150 | 88 | 4 | 3 | 149 | 22 | 170 | 1.75e-24 | 97.1 |
| Msa1283850 | AT1G70830.1 | 38.000 | 150 | 89 | 4 | 3 | 149 | 184 | 332 | 1.36e-23 | 94.7 |
| Msa1283850 | AT1G70830.4 | 38.000 | 150 | 89 | 4 | 3 | 149 | 137 | 285 | 2.97e-24 | 95.5 |
| Msa1283850 | AT1G70830.4 | 35.484 | 93 | 58 | 2 | 59 | 149 | 31 | 123 | 8.36e-12 | 62.0 |
| Msa1283850 | AT5G28000.1 | 35.333 | 150 | 93 | 4 | 3 | 149 | 13 | 161 | 2.46e-23 | 90.1 |
| Msa1283850 | AT1G70850.2 | 36.667 | 150 | 91 | 4 | 3 | 149 | 9 | 157 | 1.47e-22 | 90.1 |
| Msa1283850 | AT1G23120.1 | 28.859 | 149 | 102 | 2 | 1 | 149 | 1 | 145 | 1.83e-22 | 87.4 |
| Msa1283850 | AT1G23120.2 | 29.371 | 143 | 97 | 2 | 7 | 149 | 57 | 195 | 4.19e-22 | 87.8 |
| Msa1283850 | AT1G70850.3 | 36.667 | 150 | 91 | 4 | 3 | 149 | 9 | 157 | 4.39e-22 | 90.1 |
| Msa1283850 | AT1G70850.3 | 36.429 | 140 | 85 | 4 | 13 | 149 | 175 | 313 | 2.27e-20 | 85.5 |
| Msa1283850 | AT1G70850.1 | 36.667 | 150 | 91 | 4 | 3 | 149 | 9 | 157 | 4.39e-22 | 90.1 |
| Msa1283850 | AT1G70850.1 | 36.429 | 140 | 85 | 4 | 13 | 149 | 175 | 313 | 2.27e-20 | 85.5 |
| Msa1283850 | AT1G70870.1 | 38.542 | 96 | 59 | 0 | 55 | 150 | 43 | 138 | 2.58e-21 | 84.3 |
| Msa1283850 | AT1G14930.1 | 30.769 | 156 | 106 | 2 | 1 | 155 | 1 | 155 | 4.06e-21 | 84.3 |
| Msa1283850 | AT1G23130.1 | 31.544 | 149 | 99 | 3 | 3 | 149 | 10 | 157 | 4.48e-21 | 84.3 |
| Msa1283850 | AT4G23670.1 | 32.895 | 152 | 100 | 2 | 1 | 151 | 1 | 151 | 5.42e-21 | 84.0 |
| Msa1283850 | AT2G01520.1 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 6.12e-20 | 81.3 |
| Msa1283850 | AT4G14060.1 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 1.34e-18 | 77.8 |
| Msa1283850 | AT2G01530.1 | 29.605 | 152 | 105 | 2 | 1 | 151 | 1 | 151 | 3.50e-18 | 76.6 |
| Msa1283850 | AT1G70880.1 | 30.667 | 150 | 100 | 4 | 3 | 149 | 8 | 156 | 4.67e-18 | 76.6 |
| Msa1283850 | AT1G14940.1 | 28.846 | 156 | 109 | 2 | 1 | 155 | 1 | 155 | 4.90e-18 | 76.3 |
| Msa1283850 | AT4G23680.1 | 29.139 | 151 | 105 | 2 | 1 | 150 | 1 | 150 | 1.46e-17 | 75.1 |
| Msa1283850 | AT1G30990.1 | 30.000 | 150 | 102 | 3 | 1 | 149 | 1 | 148 | 5.10e-17 | 73.6 |
| Msa1283850 | AT1G14950.1 | 28.846 | 156 | 109 | 2 | 1 | 155 | 1 | 155 | 5.81e-17 | 73.6 |
| Msa1283850 | AT1G35260.1 | 30.137 | 146 | 97 | 4 | 7 | 149 | 6 | 149 | 7.65e-17 | 73.2 |
| Msa1283850 | AT3G26450.1 | 28.105 | 153 | 107 | 3 | 1 | 151 | 1 | 152 | 6.29e-15 | 68.2 |
| Msa1283850 | AT1G14960.1 | 28.477 | 151 | 106 | 2 | 1 | 150 | 1 | 150 | 1.72e-14 | 67.0 |
| Msa1283850 | AT3G26460.1 | 27.451 | 153 | 108 | 3 | 1 | 151 | 1 | 152 | 6.94e-14 | 65.5 |
| Msa1283850 | AT1G35310.1 | 27.338 | 139 | 97 | 4 | 13 | 149 | 12 | 148 | 1.70e-13 | 64.3 |
| Msa1283850 | AT1G24020.1 | 30.263 | 152 | 103 | 3 | 1 | 150 | 1 | 151 | 3.97e-12 | 60.8 |
| Msa1283850 | AT1G24020.2 | 30.263 | 152 | 103 | 3 | 1 | 150 | 1 | 151 | 3.97e-12 | 60.8 |
| Msa1283850 | AT1G14940.2 | 25.641 | 156 | 98 | 2 | 1 | 155 | 1 | 139 | 6.72e-11 | 57.4 |
Find 41 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGCAATTTCTATTTAA+AGG | 0.165201 | 8_3:+25677993 | Msa1283850:five_prime_UTR |
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 8_3:-25678215 | None:intergenic |
| GGTTGATATTATGATGAAAC+TGG | 0.396131 | 8_3:-25678029 | None:intergenic |
| AAGTTCAGTACTAAGTTTAC+CGG | 0.399540 | 8_3:-25678104 | None:intergenic |
| AACATTAGCGAAAGAGTTCA+TGG | 0.404572 | 8_3:+25678190 | Msa1283850:CDS |
| AACAAGTCCATCCAGCCATT+TGG | 0.409540 | 8_3:-25678764 | None:intergenic |
| CAATTTCTATTTAAAGGCAT+GGG | 0.424203 | 8_3:+25677999 | Msa1283850:five_prime_UTR |
| GAAATAGAAGAAAGAAACTA+GGG | 0.428379 | 8_3:-25678050 | None:intergenic |
| ATCATTGAAGTAATTGATAA+TGG | 0.438898 | 8_3:+25678677 | Msa1283850:CDS |
| GCAATTTCTATTTAAAGGCA+TGG | 0.443301 | 8_3:+25677998 | Msa1283850:five_prime_UTR |
| ATGGCAGTGGAGCTGCAAAA+TGG | 0.452179 | 8_3:+25678702 | Msa1283850:CDS |
| AAACTCACTTTCAAGCTCTT+CGG | 0.455962 | 8_3:+25678617 | Msa1283850:CDS |
| AATGGCTGGATGGACTTGTT+AGG | 0.459576 | 8_3:+25678767 | Msa1283850:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8_3:+25678259 | Msa1283850:CDS |
| TGATCTTAGTTTGAATGTGC+TGG | 0.474089 | 8_3:+25678952 | Msa1283850:three_prime_UTR |
| AGAAATAGAAGAAAGAAACT+AGG | 0.481456 | 8_3:-25678051 | None:intergenic |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8_3:+25678218 | Msa1283850:CDS |
| AGACATTGATGAGCACTATA+AGG | 0.495099 | 8_3:+25678643 | Msa1283850:CDS |
| AAGTAACAAATATGTTGTAA+TGG | 0.503472 | 8_3:+25678858 | Msa1283850:three_prime_UTR |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8_3:+25678234 | Msa1283850:CDS |
| ATATTGACCCTCCAAATGGC+TGG | 0.527845 | 8_3:+25678753 | Msa1283850:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.539495 | 8_3:+25678749 | Msa1283850:CDS |
| GGTAAACTTAGTACTGAACT+TGG | 0.549891 | 8_3:+25678106 | Msa1283850:CDS |
| AAGTCCATCCAGCCATTTGG+AGG | 0.551025 | 8_3:-25678761 | None:intergenic |
| CTCACTTTCAAGCTCTTCGG+TGG | 0.553344 | 8_3:+25678620 | Msa1283850:CDS |
| TCACATCACAACAGATGGTA+AGG | 0.554203 | 8_3:+25678550 | Msa1283850:intron |
| CATTCAGAAATGGTGCTCGC+CGG | 0.555555 | 8_3:+25678085 | Msa1283850:exon |
| ATTGATAATGGTGATGGCAG+TGG | 0.556824 | 8_3:+25678689 | Msa1283850:CDS |
| TGACCCTCCAAATGGCTGGA+TGG | 0.557517 | 8_3:+25678757 | Msa1283850:CDS |
| ATTGATCTTCTCATATTCAA+CGG | 0.576809 | 8_3:-25678726 | None:intergenic |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 8_3:+25678806 | Msa1283850:CDS |
| AATTTCTATTTAAAGGCATG+GGG | 0.609757 | 8_3:+25678000 | Msa1283850:five_prime_UTR |
| ATATTCGTAAAAGCATACAT+TGG | 0.610956 | 8_3:+25678922 | Msa1283850:three_prime_UTR |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8_3:+25678245 | Msa1283850:CDS |
| GAAGTAATTGATAATGGTGA+TGG | 0.618480 | 8_3:+25678683 | Msa1283850:CDS |
| TAGTTTGAAGAACTTGTCGA+CGG | 0.618944 | 8_3:-25678140 | None:intergenic |
| GTAAACTTAGTACTGAACTT+GGG | 0.625486 | 8_3:+25678107 | Msa1283850:CDS |
| AGTTTGAAGAACTTGTCGAC+GGG | 0.627390 | 8_3:-25678139 | None:intergenic |
| CATGGTGCCAAACTTCATGA+AGG | 0.632424 | 8_3:+25678208 | Msa1283850:CDS |
| AGTCCATCCAGCCATTTGGA+GGG | 0.644461 | 8_3:-25678760 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.699788 | 8_3:+25678730 | Msa1283850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATAAACAAGATGATA+TGG | - | chr8_3:25678317-25678336 | None:intergenic | 15.0% |
| !! | ATAGAGTTATGAAAAATATA+TGG | - | chr8_3:25678494-25678513 | None:intergenic | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+TGG | + | chr8_3:25678514-25678533 | Msa1283850:intron | 15.0% |
| !! | TATAAATAAACAAGATGATA+TGG | - | chr8_3:25678317-25678336 | None:intergenic | 15.0% |
| !! | ATAGAGTTATGAAAAATATA+TGG | - | chr8_3:25678494-25678513 | None:intergenic | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+TGG | + | chr8_3:25678514-25678533 | Msa1283850:intron | 15.0% |
| !! | GTAATGCAATTTCTATTTAA+AGG | + | chr8_3:25677993-25678012 | Msa1283850:five_prime_UTR | 20.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | - | chr8_3:25678347-25678366 | None:intergenic | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | + | chr8_3:25678348-25678367 | Msa1283850:intron | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | + | chr8_3:25678349-25678368 | Msa1283850:intron | 20.0% |
| !! | CATAATCTTCATATAAAGTA+TGG | - | chr8_3:25678376-25678395 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | + | chr8_3:25678677-25678696 | Msa1283850:CDS | 20.0% |
| !! | AAGTAACAAATATGTTGTAA+TGG | + | chr8_3:25678858-25678877 | Msa1283850:three_prime_UTR | 20.0% |
| !! | GTAATGCAATTTCTATTTAA+AGG | + | chr8_3:25677993-25678012 | Msa1283850:five_prime_UTR | 20.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | - | chr8_3:25678347-25678366 | None:intergenic | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | + | chr8_3:25678348-25678367 | Msa1283850:intron | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | + | chr8_3:25678349-25678368 | Msa1283850:intron | 20.0% |
| !! | CATAATCTTCATATAAAGTA+TGG | - | chr8_3:25678376-25678395 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | + | chr8_3:25678677-25678696 | Msa1283850:CDS | 20.0% |
| !! | AAGTAACAAATATGTTGTAA+TGG | + | chr8_3:25678858-25678877 | Msa1283850:three_prime_UTR | 20.0% |
| !! | CAATTTCTATTTAAAGGCAT+GGG | + | chr8_3:25677999-25678018 | Msa1283850:five_prime_UTR | 25.0% |
| !! | AATTTCTATTTAAAGGCATG+GGG | + | chr8_3:25678000-25678019 | Msa1283850:five_prime_UTR | 25.0% |
| ! | GAAATAGAAGAAAGAAACTA+GGG | - | chr8_3:25678053-25678072 | None:intergenic | 25.0% |
| ! | AGAAATAGAAGAAAGAAACT+AGG | - | chr8_3:25678054-25678073 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTCATTCAGAAA+TGG | + | chr8_3:25678075-25678094 | Msa1283850:exon | 25.0% |
| ! | AATAAACAAGATGATATGGA+GGG | - | chr8_3:25678313-25678332 | None:intergenic | 25.0% |
| ! | AAATAAACAAGATGATATGG+AGG | - | chr8_3:25678314-25678333 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | - | chr8_3:25678729-25678748 | None:intergenic | 25.0% |
| !! | ATATTCGTAAAAGCATACAT+TGG | + | chr8_3:25678922-25678941 | Msa1283850:three_prime_UTR | 25.0% |
| !! | ATTTTTGTAACAACCAATAC+TGG | + | chr8_3:25679063-25679082 | Msa1283850:three_prime_UTR | 25.0% |
| !! | CAATTTCTATTTAAAGGCAT+GGG | + | chr8_3:25677999-25678018 | Msa1283850:five_prime_UTR | 25.0% |
| !! | AATTTCTATTTAAAGGCATG+GGG | + | chr8_3:25678000-25678019 | Msa1283850:five_prime_UTR | 25.0% |
| ! | GAAATAGAAGAAAGAAACTA+GGG | - | chr8_3:25678053-25678072 | None:intergenic | 25.0% |
| ! | AGAAATAGAAGAAAGAAACT+AGG | - | chr8_3:25678054-25678073 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTCATTCAGAAA+TGG | + | chr8_3:25678075-25678094 | Msa1283850:exon | 25.0% |
| ! | AATAAACAAGATGATATGGA+GGG | - | chr8_3:25678313-25678332 | None:intergenic | 25.0% |
| ! | AAATAAACAAGATGATATGG+AGG | - | chr8_3:25678314-25678333 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | - | chr8_3:25678729-25678748 | None:intergenic | 25.0% |
| !! | ATATTCGTAAAAGCATACAT+TGG | + | chr8_3:25678922-25678941 | Msa1283850:three_prime_UTR | 25.0% |
| !! | ATTTTTGTAACAACCAATAC+TGG | + | chr8_3:25679063-25679082 | Msa1283850:three_prime_UTR | 25.0% |
| GCAATTTCTATTTAAAGGCA+TGG | + | chr8_3:25677998-25678017 | Msa1283850:five_prime_UTR | 30.0% | |
| ! | GGTTGATATTATGATGAAAC+TGG | - | chr8_3:25678032-25678051 | None:intergenic | 30.0% |
| AAGTTCAGTACTAAGTTTAC+CGG | - | chr8_3:25678107-25678126 | None:intergenic | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | + | chr8_3:25678107-25678126 | Msa1283850:CDS | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | + | chr8_3:25678683-25678702 | Msa1283850:CDS | 30.0% |
| TGAATATGAGAAGATCAATG+AGG | + | chr8_3:25678730-25678749 | Msa1283850:CDS | 30.0% | |
| !!! | CAATACTGGTGTTTTTTTCT+CGG | + | chr8_3:25679077-25679096 | Msa1283850:three_prime_UTR | 30.0% |
| GCAATTTCTATTTAAAGGCA+TGG | + | chr8_3:25677998-25678017 | Msa1283850:five_prime_UTR | 30.0% | |
| ! | GGTTGATATTATGATGAAAC+TGG | - | chr8_3:25678032-25678051 | None:intergenic | 30.0% |
| AAGTTCAGTACTAAGTTTAC+CGG | - | chr8_3:25678107-25678126 | None:intergenic | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | + | chr8_3:25678107-25678126 | Msa1283850:CDS | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | + | chr8_3:25678683-25678702 | Msa1283850:CDS | 30.0% |
| TGAATATGAGAAGATCAATG+AGG | + | chr8_3:25678730-25678749 | Msa1283850:CDS | 30.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | + | chr8_3:25678106-25678125 | Msa1283850:CDS | 35.0% |
| TAGTTTGAAGAACTTGTCGA+CGG | - | chr8_3:25678143-25678162 | None:intergenic | 35.0% | |
| AACATTAGCGAAAGAGTTCA+TGG | + | chr8_3:25678190-25678209 | Msa1283850:CDS | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8_3:25678218-25678237 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8_3:25678218-25678237 | Msa1283850:CDS | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr8_3:25678259-25678278 | Msa1283850:CDS | 35.0% | |
| AAACTCACTTTCAAGCTCTT+CGG | + | chr8_3:25678617-25678636 | Msa1283850:CDS | 35.0% | |
| AGACATTGATGAGCACTATA+AGG | + | chr8_3:25678643-25678662 | Msa1283850:CDS | 35.0% | |
| ! | TGATCTTAGTTTGAATGTGC+TGG | + | chr8_3:25678952-25678971 | Msa1283850:three_prime_UTR | 35.0% |
| CGAGAAAAAAACACCAGTAT+TGG | - | chr8_3:25679079-25679098 | None:intergenic | 35.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | + | chr8_3:25678106-25678125 | Msa1283850:CDS | 35.0% |
| TAGTTTGAAGAACTTGTCGA+CGG | - | chr8_3:25678143-25678162 | None:intergenic | 35.0% | |
| AACATTAGCGAAAGAGTTCA+TGG | + | chr8_3:25678190-25678209 | Msa1283850:CDS | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8_3:25678218-25678237 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8_3:25678218-25678237 | Msa1283850:CDS | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr8_3:25678259-25678278 | Msa1283850:CDS | 35.0% | |
| AAACTCACTTTCAAGCTCTT+CGG | + | chr8_3:25678617-25678636 | Msa1283850:CDS | 35.0% | |
| AGACATTGATGAGCACTATA+AGG | + | chr8_3:25678643-25678662 | Msa1283850:CDS | 35.0% | |
| ! | TGATCTTAGTTTGAATGTGC+TGG | + | chr8_3:25678952-25678971 | Msa1283850:three_prime_UTR | 35.0% |
| CGAGAAAAAAACACCAGTAT+TGG | - | chr8_3:25679079-25679098 | None:intergenic | 35.0% | |
| AGTTTGAAGAACTTGTCGAC+GGG | - | chr8_3:25678142-25678161 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8_3:25678234-25678253 | Msa1283850:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8_3:25678245-25678264 | Msa1283850:CDS | 40.0% |
| ACCATCTGTTGTGATGTGAA+GGG | - | chr8_3:25678549-25678568 | None:intergenic | 40.0% | |
| TACCATCTGTTGTGATGTGA+AGG | - | chr8_3:25678550-25678569 | None:intergenic | 40.0% | |
| TCACATCACAACAGATGGTA+AGG | + | chr8_3:25678550-25678569 | Msa1283850:intron | 40.0% | |
| !! | ATTGATAATGGTGATGGCAG+TGG | + | chr8_3:25678689-25678708 | Msa1283850:CDS | 40.0% |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8_3:25678806-25678825 | Msa1283850:CDS | 40.0% | |
| AGTTTGAAGAACTTGTCGAC+GGG | - | chr8_3:25678142-25678161 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8_3:25678234-25678253 | Msa1283850:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8_3:25678245-25678264 | Msa1283850:CDS | 40.0% |
| ACCATCTGTTGTGATGTGAA+GGG | - | chr8_3:25678549-25678568 | None:intergenic | 40.0% | |
| TACCATCTGTTGTGATGTGA+AGG | - | chr8_3:25678550-25678569 | None:intergenic | 40.0% | |
| TCACATCACAACAGATGGTA+AGG | + | chr8_3:25678550-25678569 | Msa1283850:intron | 40.0% | |
| !! | ATTGATAATGGTGATGGCAG+TGG | + | chr8_3:25678689-25678708 | Msa1283850:CDS | 40.0% |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8_3:25678806-25678825 | Msa1283850:CDS | 40.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | + | chr8_3:25678208-25678227 | Msa1283850:CDS | 45.0% |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8_3:25678749-25678768 | Msa1283850:CDS | 45.0% | |
| ATATTGACCCTCCAAATGGC+TGG | + | chr8_3:25678753-25678772 | Msa1283850:CDS | 45.0% | |
| AACAAGTCCATCCAGCCATT+TGG | - | chr8_3:25678767-25678786 | None:intergenic | 45.0% | |
| ! | AATGGCTGGATGGACTTGTT+AGG | + | chr8_3:25678767-25678786 | Msa1283850:CDS | 45.0% |
| ! | CATGGTGCCAAACTTCATGA+AGG | + | chr8_3:25678208-25678227 | Msa1283850:CDS | 45.0% |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8_3:25678749-25678768 | Msa1283850:CDS | 45.0% | |
| ATATTGACCCTCCAAATGGC+TGG | + | chr8_3:25678753-25678772 | Msa1283850:CDS | 45.0% | |
| AACAAGTCCATCCAGCCATT+TGG | - | chr8_3:25678767-25678786 | None:intergenic | 45.0% | |
| ! | AATGGCTGGATGGACTTGTT+AGG | + | chr8_3:25678767-25678786 | Msa1283850:CDS | 45.0% |
| CATTCAGAAATGGTGCTCGC+CGG | + | chr8_3:25678085-25678104 | Msa1283850:exon | 50.0% | |
| GCCCTTCACATCACAACAGA+TGG | + | chr8_3:25678545-25678564 | Msa1283850:intron | 50.0% | |
| CTCACTTTCAAGCTCTTCGG+TGG | + | chr8_3:25678620-25678639 | Msa1283850:CDS | 50.0% | |
| ATGGCAGTGGAGCTGCAAAA+TGG | + | chr8_3:25678702-25678721 | Msa1283850:CDS | 50.0% | |
| AGTCCATCCAGCCATTTGGA+GGG | - | chr8_3:25678763-25678782 | None:intergenic | 50.0% | |
| AAGTCCATCCAGCCATTTGG+AGG | - | chr8_3:25678764-25678783 | None:intergenic | 50.0% | |
| CATTCAGAAATGGTGCTCGC+CGG | + | chr8_3:25678085-25678104 | Msa1283850:exon | 50.0% | |
| GCCCTTCACATCACAACAGA+TGG | + | chr8_3:25678545-25678564 | Msa1283850:intron | 50.0% | |
| CTCACTTTCAAGCTCTTCGG+TGG | + | chr8_3:25678620-25678639 | Msa1283850:CDS | 50.0% | |
| ATGGCAGTGGAGCTGCAAAA+TGG | + | chr8_3:25678702-25678721 | Msa1283850:CDS | 50.0% | |
| AGTCCATCCAGCCATTTGGA+GGG | - | chr8_3:25678763-25678782 | None:intergenic | 50.0% | |
| AAGTCCATCCAGCCATTTGG+AGG | - | chr8_3:25678764-25678783 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTGGA+TGG | + | chr8_3:25678757-25678776 | Msa1283850:CDS | 55.0% | |
| TGACCCTCCAAATGGCTGGA+TGG | + | chr8_3:25678757-25678776 | Msa1283850:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 25677982 | 25679099 | 25677982 | ID=Msa1283850;Name=Msa1283850 |
| chr8_3 | mRNA | 25677982 | 25679099 | 25677982 | ID=Msa1283850-mRNA-1;Parent=Msa1283850;Name=Msa1283850-mRNA-1;_AED=0.26;_eAED=0.26;_QI=112|1|1|1|1|1|2|252|156 |
| chr8_3 | exon | 25677982 | 25678280 | 25677982 | ID=Msa1283850-mRNA-1:exon:9047;Parent=Msa1283850-mRNA-1 |
| chr8_3 | exon | 25678564 | 25679099 | 25678564 | ID=Msa1283850-mRNA-1:exon:9048;Parent=Msa1283850-mRNA-1 |
| chr8_3 | five_prime_UTR | 25677982 | 25678093 | 25677982 | ID=Msa1283850-mRNA-1:five_prime_utr;Parent=Msa1283850-mRNA-1 |
| chr8_3 | CDS | 25678094 | 25678280 | 25678094 | ID=Msa1283850-mRNA-1:cds;Parent=Msa1283850-mRNA-1 |
| chr8_3 | CDS | 25678564 | 25678847 | 25678564 | ID=Msa1283850-mRNA-1:cds;Parent=Msa1283850-mRNA-1 |
| chr8_3 | three_prime_UTR | 25678848 | 25679099 | 25678848 | ID=Msa1283850-mRNA-1:three_prime_utr;Parent=Msa1283850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
