Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909160 | XP_003628192.1 | 91.870 | 123 | 10 | 0 | 4 | 126 | 34 | 156 | 8.15e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909160 | sp|Q941R6|MLP31_ARATH | 38.261 | 115 | 68 | 3 | 7 | 119 | 55 | 168 | 3.33e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0909130 | Msa0909160 | 0.845740 | 3.364297e-59 | -8.615850e-47 |
| Msa0909160 | Msa1242200 | 0.914276 | 2.317528e-84 | -8.615850e-47 |
| Msa0909160 | Msa1283850 | 0.817301 | 3.539921e-52 | -8.615850e-47 |
| Msa0909160 | Msa1322900 | 0.854530 | 1.157759e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909160 | MtrunA17_Chr8g0355661 | 91.870 | 123 | 10 | 0 | 4 | 126 | 34 | 156 | 7.49e-82 | 236 |
| Msa0909160 | MtrunA17_Chr8g0355741 | 77.869 | 122 | 26 | 1 | 6 | 126 | 36 | 157 | 7.45e-66 | 196 |
| Msa0909160 | MtrunA17_Chr8g0355721 | 77.869 | 122 | 25 | 2 | 6 | 126 | 36 | 156 | 2.21e-65 | 195 |
| Msa0909160 | MtrunA17_Chr8g0355781 | 73.504 | 117 | 30 | 1 | 6 | 121 | 36 | 152 | 3.07e-60 | 182 |
| Msa0909160 | MtrunA17_Chr8g0355761 | 72.650 | 117 | 31 | 1 | 6 | 121 | 36 | 152 | 5.55e-60 | 181 |
| Msa0909160 | MtrunA17_Chr8g0355811 | 69.672 | 122 | 35 | 2 | 6 | 126 | 36 | 156 | 1.51e-58 | 177 |
| Msa0909160 | MtrunA17_Chr8g0355791 | 72.131 | 122 | 32 | 2 | 6 | 126 | 36 | 156 | 2.12e-58 | 177 |
| Msa0909160 | MtrunA17_Chr8g0355801 | 69.672 | 122 | 35 | 2 | 6 | 126 | 36 | 156 | 2.84e-57 | 174 |
| Msa0909160 | MtrunA17_Chr8g0355771 | 70.492 | 122 | 34 | 2 | 6 | 126 | 36 | 156 | 3.03e-57 | 174 |
| Msa0909160 | MtrunA17_Chr8g0355641 | 66.116 | 121 | 40 | 1 | 6 | 125 | 36 | 156 | 1.82e-56 | 172 |
| Msa0909160 | MtrunA17_Chr8g0355821 | 67.500 | 120 | 37 | 2 | 6 | 124 | 36 | 154 | 4.01e-56 | 172 |
| Msa0909160 | MtrunA17_Chr1g0160371 | 42.241 | 116 | 63 | 3 | 8 | 120 | 38 | 152 | 1.68e-26 | 96.7 |
| Msa0909160 | MtrunA17_Chr1g0160381 | 38.938 | 113 | 65 | 3 | 11 | 120 | 45 | 156 | 9.18e-25 | 92.4 |
| Msa0909160 | MtrunA17_Chr1g0160801 | 41.026 | 117 | 63 | 3 | 5 | 121 | 37 | 147 | 8.59e-23 | 87.0 |
| Msa0909160 | MtrunA17_Chr1g0160391 | 42.149 | 121 | 60 | 5 | 6 | 118 | 37 | 155 | 2.42e-22 | 86.3 |
| Msa0909160 | MtrunA17_Chr8g0339261 | 41.071 | 112 | 63 | 3 | 8 | 118 | 41 | 150 | 5.09e-22 | 85.1 |
| Msa0909160 | MtrunA17_Chr1g0160351 | 40.860 | 93 | 52 | 2 | 31 | 120 | 1 | 93 | 1.37e-20 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909160 | AT1G70870.1 | 38.542 | 96 | 59 | 0 | 25 | 120 | 43 | 138 | 1.72e-21 | 83.6 |
| Msa0909160 | AT1G23120.1 | 31.034 | 116 | 79 | 1 | 4 | 119 | 31 | 145 | 4.77e-20 | 80.1 |
| Msa0909160 | AT1G23120.2 | 31.034 | 116 | 79 | 1 | 4 | 119 | 81 | 195 | 9.12e-20 | 80.9 |
| Msa0909160 | AT1G70840.1 | 38.261 | 115 | 68 | 3 | 7 | 119 | 55 | 168 | 3.39e-19 | 78.6 |
| Msa0909160 | AT5G28010.1 | 36.842 | 114 | 69 | 3 | 8 | 119 | 51 | 163 | 1.11e-18 | 77.4 |
| Msa0909160 | AT5G28010.2 | 36.842 | 114 | 69 | 3 | 8 | 119 | 51 | 163 | 1.11e-18 | 77.4 |
| Msa0909160 | AT1G70830.5 | 37.719 | 114 | 68 | 3 | 8 | 119 | 58 | 170 | 1.13e-17 | 74.7 |
| Msa0909160 | AT1G14930.1 | 33.898 | 118 | 77 | 1 | 8 | 125 | 39 | 155 | 1.59e-17 | 73.9 |
| Msa0909160 | AT1G70830.3 | 37.719 | 114 | 68 | 3 | 8 | 119 | 58 | 170 | 1.62e-17 | 75.1 |
| Msa0909160 | AT1G70890.1 | 36.522 | 115 | 70 | 3 | 7 | 119 | 42 | 155 | 3.00e-17 | 73.2 |
| Msa0909160 | AT1G70830.4 | 37.719 | 114 | 68 | 3 | 8 | 119 | 173 | 285 | 5.48e-17 | 75.1 |
| Msa0909160 | AT1G70830.4 | 35.484 | 93 | 58 | 2 | 29 | 119 | 31 | 123 | 4.01e-12 | 61.6 |
| Msa0909160 | AT1G70830.2 | 37.719 | 114 | 68 | 3 | 8 | 119 | 58 | 170 | 7.33e-17 | 74.3 |
| Msa0909160 | AT1G70850.3 | 37.719 | 114 | 68 | 3 | 8 | 119 | 201 | 313 | 7.91e-17 | 74.7 |
| Msa0909160 | AT1G70850.3 | 35.965 | 114 | 70 | 3 | 8 | 119 | 45 | 157 | 3.32e-15 | 70.5 |
| Msa0909160 | AT1G70850.1 | 37.719 | 114 | 68 | 3 | 8 | 119 | 201 | 313 | 7.91e-17 | 74.7 |
| Msa0909160 | AT1G70850.1 | 35.965 | 114 | 70 | 3 | 8 | 119 | 45 | 157 | 3.32e-15 | 70.5 |
| Msa0909160 | AT5G28000.1 | 36.752 | 117 | 71 | 3 | 5 | 119 | 46 | 161 | 9.52e-17 | 72.0 |
| Msa0909160 | AT1G70830.1 | 37.719 | 114 | 68 | 3 | 8 | 119 | 58 | 170 | 9.64e-17 | 74.7 |
| Msa0909160 | AT1G70830.1 | 37.719 | 114 | 68 | 3 | 8 | 119 | 220 | 332 | 1.75e-16 | 73.9 |
| Msa0909160 | AT1G23130.1 | 34.211 | 114 | 72 | 3 | 8 | 119 | 45 | 157 | 1.00e-16 | 72.0 |
| Msa0909160 | AT4G23670.1 | 35.780 | 109 | 69 | 1 | 13 | 121 | 44 | 151 | 1.35e-16 | 71.6 |
| Msa0909160 | AT1G70850.2 | 35.652 | 115 | 71 | 3 | 8 | 120 | 45 | 158 | 2.07e-15 | 70.1 |
| Msa0909160 | AT2G01520.1 | 30.702 | 114 | 78 | 1 | 8 | 121 | 39 | 151 | 2.91e-15 | 68.2 |
| Msa0909160 | AT4G14060.1 | 30.702 | 114 | 78 | 1 | 8 | 121 | 39 | 151 | 1.08e-14 | 66.6 |
| Msa0909160 | AT1G14950.1 | 30.508 | 118 | 81 | 1 | 8 | 125 | 39 | 155 | 1.60e-14 | 66.2 |
| Msa0909160 | AT2G01530.1 | 29.825 | 114 | 79 | 1 | 8 | 121 | 39 | 151 | 1.19e-13 | 63.9 |
| Msa0909160 | AT1G14940.1 | 30.508 | 118 | 81 | 1 | 8 | 125 | 39 | 155 | 1.61e-13 | 63.5 |
| Msa0909160 | AT1G70880.1 | 31.579 | 114 | 75 | 3 | 8 | 119 | 44 | 156 | 1.62e-13 | 63.5 |
| Msa0909160 | AT1G35260.1 | 30.435 | 115 | 76 | 3 | 8 | 119 | 36 | 149 | 1.92e-13 | 63.2 |
| Msa0909160 | AT4G23680.1 | 30.088 | 113 | 78 | 1 | 8 | 120 | 39 | 150 | 1.33e-12 | 61.2 |
| Msa0909160 | AT1G30990.1 | 31.250 | 112 | 75 | 2 | 8 | 119 | 39 | 148 | 4.53e-11 | 57.0 |
| Msa0909160 | AT3G26450.1 | 28.696 | 115 | 80 | 2 | 8 | 121 | 39 | 152 | 7.84e-11 | 56.6 |
Find 26 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 6_2:+10331138 | None:intergenic |
| AACATTAGCGAAAGAGTTCC+TGG | 0.390706 | 6_2:-10331163 | Msa0909160:intron |
| AACAAGTCCATCCAGCCATT+TGG | 0.409540 | 6_2:+10330588 | None:intergenic |
| ATCATTGAAGTAATTGATAA+TGG | 0.438898 | 6_2:-10330675 | Msa0909160:CDS |
| ATGGCAGTGGAGCTGCAAAA+TGG | 0.452179 | 6_2:-10330650 | Msa0909160:CDS |
| AAACTCACTTTCAAGCTCTT+CGG | 0.455962 | 6_2:-10330735 | Msa0909160:CDS |
| AATGGCTGGATGGACTTGTT+AGG | 0.459576 | 6_2:-10330585 | Msa0909160:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 6_2:-10331094 | Msa0909160:intron |
| CCTTCATGAAGTTTGGCACC+AGG | 0.490652 | 6_2:+10331145 | None:intergenic |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 6_2:-10331135 | Msa0909160:CDS |
| AGACATTGATGAGCACTATA+AGG | 0.495099 | 6_2:-10330709 | Msa0909160:CDS |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 6_2:-10331119 | Msa0909160:CDS |
| ATATTGACCCTCCAAATGGC+TGG | 0.527845 | 6_2:-10330599 | Msa0909160:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.539495 | 6_2:-10330603 | Msa0909160:CDS |
| AAGTCCATCCAGCCATTTGG+AGG | 0.551025 | 6_2:+10330591 | None:intergenic |
| CTCACTTTCAAGCTCTTCGG+TGG | 0.553344 | 6_2:-10330732 | Msa0909160:CDS |
| TGACATCACAACAGATGGTA+AGG | 0.554203 | 6_2:-10330802 | Msa0909160:intron |
| ATTGATAATGGTGATGGCAG+TGG | 0.556824 | 6_2:-10330663 | Msa0909160:CDS |
| TGACCCTCCAAATGGCTGGA+TGG | 0.557517 | 6_2:-10330595 | Msa0909160:CDS |
| ATTGATCTTCTCATATTCAA+CGG | 0.576809 | 6_2:+10330626 | None:intergenic |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 6_2:-10330546 | Msa0909160:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 6_2:-10331108 | Msa0909160:CDS |
| GAAGTAATTGATAATGGTGA+TGG | 0.618480 | 6_2:-10330669 | Msa0909160:CDS |
| CCTGGTGCCAAACTTCATGA+AGG | 0.632238 | 6_2:-10331145 | Msa0909160:CDS |
| AGTCCATCCAGCCATTTGGA+GGG | 0.644461 | 6_2:+10330592 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.699788 | 6_2:-10330622 | Msa0909160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAATTTAATTAA+TGG | - | chr6_2:10331717-10331736 | Msa0909160:intron | 0.0% |
| !!! | TAACAATTTTTTTTGAATAA+TGG | + | chr6_2:10330839-10330858 | None:intergenic | 10.0% |
| !! | TTTCATAAAAAAAGATAAAA+TGG | + | chr6_2:10330866-10330885 | None:intergenic | 10.0% |
| !!! | TATTAGATATACTATTTTGT+TGG | + | chr6_2:10330889-10330908 | None:intergenic | 15.0% |
| !!! | TATAGAGAATATATGATTTT+GGG | + | chr6_2:10331001-10331020 | None:intergenic | 15.0% |
| !!! | ATATAGAGAATATATGATTT+TGG | + | chr6_2:10331002-10331021 | None:intergenic | 15.0% |
| !! | TATAGAGAAAAAAATGTTTA+AGG | - | chr6_2:10331541-10331560 | Msa0909160:intron | 15.0% |
| !! | AAAATGTTTAAGGATATAAT+TGG | - | chr6_2:10331551-10331570 | Msa0909160:intron | 15.0% |
| !! | AAATTAGATCTCATTAAAAT+AGG | + | chr6_2:10331657-10331676 | None:intergenic | 15.0% |
| !!! | TAAAGAAATTAAAATTTTGG+AGG | - | chr6_2:10331938-10331957 | Msa0909160:intron | 15.0% |
| !!! | AAAGAAATTAAAATTTTGGA+GGG | - | chr6_2:10331939-10331958 | Msa0909160:intron | 15.0% |
| !! | TATAAATAAACAAGATGATA+TGG | + | chr6_2:10332527-10332546 | None:intergenic | 15.0% |
| !! | ATAGAGTAATGAAAAATATA+TGG | + | chr6_2:10332705-10332724 | None:intergenic | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+TGG | - | chr6_2:10332725-10332744 | Msa0909160:intron | 15.0% |
| !!! | TTTGATCTGTTTTTCTTTTA+AGG | - | chr6_2:10330534-10330553 | Msa0909160:CDS | 20.0% |
| !! | CATTAACATAATAAACAAAG+AGG | + | chr6_2:10330780-10330799 | None:intergenic | 20.0% |
| !!! | ATAGAGAATATATGATTTTG+GGG | + | chr6_2:10331000-10331019 | None:intergenic | 20.0% |
| !!! | ATTATCTAGAATGTATATGA+AGG | + | chr6_2:10331609-10331628 | None:intergenic | 20.0% |
| !! | GAATATTACATTAGAATAAG+AGG | + | chr6_2:10331635-10331654 | None:intergenic | 20.0% |
| !! | AAATATAATCTAACTCACTA+TGG | - | chr6_2:10331813-10331832 | Msa0909160:intron | 20.0% |
| !!! | ACAATTTTAGATTGTTGTTT+TGG | + | chr6_2:10332071-10332090 | None:intergenic | 20.0% |
| !!! | ATTGTTGCTAAAAGTATTTA+AGG | - | chr6_2:10332086-10332105 | Msa0909160:intron | 20.0% |
| !!! | TTGTTGCTAAAAGTATTTAA+GGG | - | chr6_2:10332087-10332106 | Msa0909160:intron | 20.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | + | chr6_2:10332557-10332576 | None:intergenic | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | - | chr6_2:10332558-10332577 | Msa0909160:intron | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | - | chr6_2:10332559-10332578 | Msa0909160:intron | 20.0% |
| !! | CATAATCTTCATATAAAGTA+TGG | + | chr6_2:10332586-10332605 | None:intergenic | 20.0% |
| !! | ACTTTATCTTTATCATCTTT+AGG | + | chr6_2:10332610-10332629 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | - | chr6_2:10332888-10332907 | Msa0909160:intron | 20.0% |
| ! | TATATATACTAGCGAAAAGA+CGG | - | chr6_2:10331017-10331036 | Msa0909160:intron | 25.0% |
| ! | TAACGTTTGAAAATTTGGAA+CGG | - | chr6_2:10331084-10331103 | Msa0909160:intron | 25.0% |
| !!! | CGCTAACGTTTTAAAAATTT+TGG | + | chr6_2:10331185-10331204 | None:intergenic | 25.0% |
| ! | GTCACTGAAAAAGATAAATA+TGG | + | chr6_2:10331325-10331344 | None:intergenic | 25.0% |
| !! | ATGAAGGTGATATGAATTTT+GGG | + | chr6_2:10331593-10331612 | None:intergenic | 25.0% |
| !! | TATGAAGGTGATATGAATTT+TGG | + | chr6_2:10331594-10331613 | None:intergenic | 25.0% |
| !!! | TTTAGATTGTTGTTTTGGTT+TGG | + | chr6_2:10332066-10332085 | None:intergenic | 25.0% |
| !!! | TGTTGCTAAAAGTATTTAAG+GGG | - | chr6_2:10332088-10332107 | Msa0909160:intron | 25.0% |
| ! | AATAAACAAGATGATATGGA+GGG | + | chr6_2:10332523-10332542 | None:intergenic | 25.0% |
| ! | AAATAAACAAGATGATATGG+AGG | + | chr6_2:10332524-10332543 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | + | chr6_2:10332940-10332959 | None:intergenic | 25.0% |
| ATATATACTAGCGAAAAGAC+GGG | - | chr6_2:10331018-10331037 | Msa0909160:intron | 30.0% | |
| TTCGTAATTTATACGCATTC+TGG | + | chr6_2:10331393-10331412 | None:intergenic | 30.0% | |
| ATGTAGAGAATACATGAGTT+TGG | + | chr6_2:10331765-10331784 | None:intergenic | 30.0% | |
| ATAATCTAACTCACTATGGT+TGG | - | chr6_2:10331817-10331836 | Msa0909160:intron | 30.0% | |
| !!! | GTTGTTTTGGTTTGGATAAA+AGG | + | chr6_2:10332058-10332077 | None:intergenic | 30.0% |
| AGCTGTTGCAAAAATATTTC+TGG | - | chr6_2:10332191-10332210 | Msa0909160:intron | 30.0% | |
| AAGTTCAGTACTAAGTTTAC+CGG | + | chr6_2:10332317-10332336 | None:intergenic | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | - | chr6_2:10332317-10332336 | Msa0909160:intron | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | - | chr6_2:10332894-10332913 | Msa0909160:intron | 30.0% |
| TGAATATGAGAAGATCAATG+AGG | - | chr6_2:10332941-10332960 | Msa0909160:intron | 30.0% | |
| TGCGCTAACGTTTGAAAATT+TGG | - | chr6_2:10331079-10331098 | Msa0909160:intron | 35.0% | |
| ! | AAAGACGAACATGTTTTGCT+TGG | + | chr6_2:10331447-10331466 | None:intergenic | 35.0% |
| ! | GTGGTGTTAGTTTATAACCT+TGG | - | chr6_2:10331844-10331863 | Msa0909160:intron | 35.0% |
| ! | ATCGAATTTGAGATCTTGAG+AGG | + | chr6_2:10331878-10331897 | None:intergenic | 35.0% |
| ! | CTCATCGATGTCAATTTTGA+TGG | - | chr6_2:10331899-10331918 | Msa0909160:intron | 35.0% |
| TACGCAACACTGATGTAATT+TGG | - | chr6_2:10332032-10332051 | Msa0909160:intron | 35.0% | |
| ATCGTCCCCAAAAGTAATTT+AGG | - | chr6_2:10332157-10332176 | Msa0909160:intron | 35.0% | |
| TCGTCCCCAAAAGTAATTTA+GGG | - | chr6_2:10332158-10332177 | Msa0909160:intron | 35.0% | |
| !! | TCGTCCCCTAAATTACTTTT+GGG | + | chr6_2:10332166-10332185 | None:intergenic | 35.0% |
| ! | ATCGTCCCCTAAATTACTTT+TGG | + | chr6_2:10332167-10332186 | None:intergenic | 35.0% |
| ! | GGTAAACTTAGTACTGAACT+TGG | - | chr6_2:10332316-10332335 | Msa0909160:intron | 35.0% |
| TAGTTTGAAGAACTTGTCGA+CGG | + | chr6_2:10332353-10332372 | None:intergenic | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | + | chr6_2:10332428-10332447 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | chr6_2:10332428-10332447 | Msa0909160:intron | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | - | chr6_2:10332469-10332488 | Msa0909160:intron | 35.0% | |
| AAACTCACTTTCAAGCTCTT+CGG | - | chr6_2:10332828-10332847 | Msa0909160:intron | 35.0% | |
| AGACATTGATGAGCACTATA+AGG | - | chr6_2:10332854-10332873 | Msa0909160:intron | 35.0% | |
| !! | TACTTTTGGGGACGATTTTG+AGG | + | chr6_2:10332153-10332172 | None:intergenic | 40.0% |
| CGTCCCCAAAAGTAATTTAG+GGG | - | chr6_2:10332159-10332178 | Msa0909160:intron | 40.0% | |
| !! | CGTCCCCTAAATTACTTTTG+GGG | + | chr6_2:10332165-10332184 | None:intergenic | 40.0% |
| ! | ACGTTGCCTAAACGACTTTT+AGG | - | chr6_2:10332227-10332246 | Msa0909160:intron | 40.0% |
| ! | CGTTGCCTAAACGACTTTTA+GGG | - | chr6_2:10332228-10332247 | Msa0909160:intron | 40.0% |
| ! | GTTGCCTAAACGACTTTTAG+GGG | - | chr6_2:10332229-10332248 | Msa0909160:intron | 40.0% |
| TTGTCCCCTAAAAGTCGTTT+AGG | + | chr6_2:10332236-10332255 | None:intergenic | 40.0% | |
| !! | GTCTCTGGCAACACTTTTTA+GGG | + | chr6_2:10332272-10332291 | None:intergenic | 40.0% |
| !! | TGTCTCTGGCAACACTTTTT+AGG | + | chr6_2:10332273-10332292 | None:intergenic | 40.0% |
| !! | ACTACACCATTTGTTGTCTC+TGG | + | chr6_2:10332287-10332306 | None:intergenic | 40.0% |
| AGTTTGAAGAACTTGTCGAC+GGG | + | chr6_2:10332352-10332371 | None:intergenic | 40.0% | |
| AACATTAGCGAAAGAGTTCC+TGG | - | chr6_2:10332400-10332419 | Msa0909160:intron | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | - | chr6_2:10332444-10332463 | Msa0909160:intron | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | - | chr6_2:10332455-10332474 | Msa0909160:intron | 40.0% |
| ACCATCTGTTGTGATGTCAA+GGG | + | chr6_2:10332760-10332779 | None:intergenic | 40.0% | |
| TACCATCTGTTGTGATGTCA+AGG | + | chr6_2:10332761-10332780 | None:intergenic | 40.0% | |
| TGACATCACAACAGATGGTA+AGG | - | chr6_2:10332761-10332780 | Msa0909160:intron | 40.0% | |
| !! | ATTGATAATGGTGATGGCAG+TGG | - | chr6_2:10332900-10332919 | Msa0909160:intron | 40.0% |
| GTTGATGCTCATCTTGTCAA+AGG | - | chr6_2:10333017-10333036 | Msa0909160:intron | 40.0% | |
| !! | ACTCACTATGGTTGGTCTTG+TGG | - | chr6_2:10331825-10331844 | Msa0909160:intron | 45.0% |
| GCGCTACTCAACTATCTCTT+TGG | + | chr6_2:10332131-10332150 | None:intergenic | 45.0% | |
| GTGTTGCCAGAGACAACAAA+TGG | - | chr6_2:10332278-10332297 | Msa0909160:intron | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | - | chr6_2:10332960-10332979 | Msa0909160:intron | 45.0% | |
| ATATTGACCCTCCAAATGGC+TGG | - | chr6_2:10332964-10332983 | Msa0909160:intron | 45.0% | |
| AACAAGTCCATCCAGCCATT+TGG | + | chr6_2:10332978-10332997 | None:intergenic | 45.0% | |
| ! | AATGGCTGGATGGACTTGTT+AGG | - | chr6_2:10332978-10332997 | Msa0909160:intron | 45.0% |
| !!! | ATTTAAAGAAATTAAAATTT+TGG | - | chr6_2:10331935-10331954 | Msa0909160:intron | 5.0% |
| ! | CTTGAGAGGAGCACATTCCA+AGG | + | chr6_2:10331864-10331883 | None:intergenic | 50.0% |
| AAATGGTGTAGTGTGCTCGC+CGG | - | chr6_2:10332295-10332314 | Msa0909160:intron | 50.0% | |
| CCTTCATGAAGTTTGGCACC+AGG | + | chr6_2:10332421-10332440 | None:intergenic | 50.0% | |
| ! | CCTGGTGCCAAACTTCATGA+AGG | - | chr6_2:10332418-10332437 | Msa0909160:intron | 50.0% |
| GCCCTTGACATCACAACAGA+TGG | - | chr6_2:10332756-10332775 | Msa0909160:intron | 50.0% | |
| CTCACTTTCAAGCTCTTCGG+TGG | - | chr6_2:10332831-10332850 | Msa0909160:intron | 50.0% | |
| ATGGCAGTGGAGCTGCAAAA+TGG | - | chr6_2:10332913-10332932 | Msa0909160:intron | 50.0% | |
| AGTCCATCCAGCCATTTGGA+GGG | + | chr6_2:10332974-10332993 | None:intergenic | 50.0% | |
| AAGTCCATCCAGCCATTTGG+AGG | + | chr6_2:10332975-10332994 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTGGA+TGG | - | chr6_2:10332968-10332987 | Msa0909160:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 10330527 | 10333058 | 10330527 | ID=Msa0909160;Name=Msa0909160 |
| chr6_2 | mRNA | 10330527 | 10333058 | 10330527 | ID=Msa0909160-mRNA-1;Parent=Msa0909160;Name=Msa0909160-mRNA-1;_AED=0.45;_eAED=0.46;_QI=0|0.33|0|0.5|0.33|0.25|4|0|126 |
| chr6_2 | exon | 10333053 | 10333058 | 10333053 | ID=Msa0909160-mRNA-1:exon:2664;Parent=Msa0909160-mRNA-1 |
| chr6_2 | exon | 10333001 | 10333008 | 10333001 | ID=Msa0909160-mRNA-1:exon:2663;Parent=Msa0909160-mRNA-1 |
| chr6_2 | exon | 10331095 | 10331177 | 10331095 | ID=Msa0909160-mRNA-1:exon:2662;Parent=Msa0909160-mRNA-1 |
| chr6_2 | exon | 10330527 | 10330810 | 10330527 | ID=Msa0909160-mRNA-1:exon:2661;Parent=Msa0909160-mRNA-1 |
| chr6_2 | CDS | 10333053 | 10333058 | 10333053 | ID=Msa0909160-mRNA-1:cds;Parent=Msa0909160-mRNA-1 |
| chr6_2 | CDS | 10333001 | 10333008 | 10333001 | ID=Msa0909160-mRNA-1:cds;Parent=Msa0909160-mRNA-1 |
| chr6_2 | CDS | 10331095 | 10331177 | 10331095 | ID=Msa0909160-mRNA-1:cds;Parent=Msa0909160-mRNA-1 |
| chr6_2 | CDS | 10330527 | 10330810 | 10330527 | ID=Msa0909160-mRNA-1:cds;Parent=Msa0909160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
