Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242200 | XP_003628192.1 | 94.839 | 155 | 8 | 0 | 1 | 155 | 2 | 156 | 2.05e-103 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242200 | sp|Q941R6|MLP31_ARATH | 38.000 | 150 | 89 | 4 | 2 | 148 | 20 | 168 | 4.28e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242200 | G7L7S7 | 94.839 | 155 | 8 | 0 | 1 | 155 | 2 | 156 | 9.80e-104 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1242200 | Msa1283850 | 0.818525 | 1.873157e-52 | -8.615850e-47 |
| Msa1242200 | Msa1322900 | 0.818053 | 2.395052e-52 | -8.615850e-47 |
| Msa0909130 | Msa1242200 | 0.801509 | 8.705633e-49 | -8.615850e-47 |
| Msa0909160 | Msa1242200 | 0.914276 | 2.317528e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242200 | MtrunA17_Chr8g0355661 | 94.839 | 155 | 8 | 0 | 1 | 155 | 2 | 156 | 1.89e-107 | 303 |
| Msa1242200 | MtrunA17_Chr8g0355741 | 78.846 | 156 | 32 | 1 | 1 | 155 | 2 | 157 | 2.07e-87 | 252 |
| Msa1242200 | MtrunA17_Chr8g0355721 | 76.923 | 156 | 34 | 2 | 1 | 155 | 2 | 156 | 4.07e-86 | 249 |
| Msa1242200 | MtrunA17_Chr8g0355811 | 73.077 | 156 | 40 | 2 | 1 | 155 | 2 | 156 | 2.02e-81 | 237 |
| Msa1242200 | MtrunA17_Chr8g0355781 | 72.185 | 151 | 41 | 1 | 1 | 150 | 2 | 152 | 1.16e-78 | 229 |
| Msa1242200 | MtrunA17_Chr8g0355791 | 73.077 | 156 | 40 | 2 | 1 | 155 | 2 | 156 | 3.56e-78 | 229 |
| Msa1242200 | MtrunA17_Chr8g0355641 | 69.032 | 155 | 47 | 1 | 1 | 154 | 2 | 156 | 4.43e-77 | 226 |
| Msa1242200 | MtrunA17_Chr8g0355801 | 71.154 | 156 | 43 | 2 | 1 | 155 | 2 | 156 | 4.52e-77 | 226 |
| Msa1242200 | MtrunA17_Chr8g0355761 | 70.861 | 151 | 43 | 1 | 1 | 150 | 2 | 152 | 7.32e-77 | 225 |
| Msa1242200 | MtrunA17_Chr8g0355821 | 69.481 | 154 | 45 | 2 | 1 | 153 | 2 | 154 | 9.96e-77 | 225 |
| Msa1242200 | MtrunA17_Chr8g0355771 | 71.154 | 156 | 43 | 2 | 1 | 155 | 2 | 156 | 1.76e-76 | 224 |
| Msa1242200 | MtrunA17_Chr1g0160371 | 40.132 | 152 | 87 | 3 | 1 | 149 | 2 | 152 | 1.14e-35 | 120 |
| Msa1242200 | MtrunA17_Chr1g0160381 | 37.500 | 152 | 91 | 3 | 1 | 149 | 6 | 156 | 1.30e-34 | 118 |
| Msa1242200 | MtrunA17_Chr1g0160391 | 40.000 | 155 | 82 | 6 | 2 | 147 | 3 | 155 | 9.83e-29 | 103 |
| Msa1242200 | MtrunA17_Chr1g0160801 | 38.095 | 147 | 83 | 4 | 6 | 150 | 7 | 147 | 2.11e-26 | 97.1 |
| Msa1242200 | MtrunA17_Chr8g0339261 | 35.862 | 145 | 89 | 4 | 5 | 147 | 8 | 150 | 3.22e-26 | 97.1 |
| Msa1242200 | MtrunA17_Chr1g0160351 | 40.860 | 93 | 52 | 2 | 60 | 149 | 1 | 93 | 3.22e-20 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242200 | AT5G28010.1 | 36.667 | 150 | 91 | 4 | 2 | 148 | 15 | 163 | 3.40e-26 | 97.4 |
| Msa1242200 | AT5G28010.2 | 36.667 | 150 | 91 | 4 | 2 | 148 | 15 | 163 | 3.40e-26 | 97.4 |
| Msa1242200 | AT1G70840.1 | 38.000 | 150 | 89 | 4 | 2 | 148 | 20 | 168 | 4.35e-26 | 97.4 |
| Msa1242200 | AT1G70830.5 | 38.667 | 150 | 88 | 4 | 2 | 148 | 22 | 170 | 1.22e-25 | 96.3 |
| Msa1242200 | AT1G70830.3 | 38.667 | 150 | 88 | 4 | 2 | 148 | 22 | 170 | 2.55e-25 | 96.3 |
| Msa1242200 | AT1G70830.2 | 38.667 | 150 | 88 | 4 | 2 | 148 | 22 | 170 | 1.06e-24 | 95.9 |
| Msa1242200 | AT1G70830.1 | 38.667 | 150 | 88 | 4 | 2 | 148 | 22 | 170 | 3.15e-24 | 96.3 |
| Msa1242200 | AT1G70830.1 | 38.000 | 150 | 89 | 4 | 2 | 148 | 184 | 332 | 2.20e-23 | 94.0 |
| Msa1242200 | AT1G70890.1 | 36.667 | 150 | 91 | 4 | 2 | 148 | 7 | 155 | 6.27e-24 | 91.7 |
| Msa1242200 | AT1G70830.4 | 38.000 | 150 | 89 | 4 | 2 | 148 | 137 | 285 | 6.30e-24 | 94.7 |
| Msa1242200 | AT1G70830.4 | 35.484 | 93 | 58 | 2 | 58 | 148 | 31 | 123 | 9.58e-12 | 61.6 |
| Msa1242200 | AT5G28000.1 | 35.333 | 150 | 93 | 4 | 2 | 148 | 13 | 161 | 7.94e-23 | 89.0 |
| Msa1242200 | AT1G70850.2 | 36.667 | 150 | 91 | 4 | 2 | 148 | 9 | 157 | 2.24e-22 | 89.4 |
| Msa1242200 | AT1G23120.1 | 29.371 | 143 | 97 | 2 | 6 | 148 | 7 | 145 | 3.50e-22 | 86.7 |
| Msa1242200 | AT1G70850.3 | 36.667 | 150 | 91 | 4 | 2 | 148 | 9 | 157 | 6.50e-22 | 89.7 |
| Msa1242200 | AT1G70850.3 | 37.063 | 143 | 80 | 5 | 12 | 148 | 175 | 313 | 2.73e-20 | 85.5 |
| Msa1242200 | AT1G70850.1 | 36.667 | 150 | 91 | 4 | 2 | 148 | 9 | 157 | 6.50e-22 | 89.7 |
| Msa1242200 | AT1G70850.1 | 37.063 | 143 | 80 | 5 | 12 | 148 | 175 | 313 | 2.73e-20 | 85.5 |
| Msa1242200 | AT1G23120.2 | 29.371 | 143 | 97 | 2 | 6 | 148 | 57 | 195 | 9.34e-22 | 87.0 |
| Msa1242200 | AT1G70870.1 | 38.542 | 96 | 59 | 0 | 54 | 149 | 43 | 138 | 2.79e-21 | 84.3 |
| Msa1242200 | AT1G23130.1 | 31.544 | 149 | 99 | 3 | 2 | 148 | 10 | 157 | 1.36e-20 | 83.2 |
| Msa1242200 | AT1G14930.1 | 30.323 | 155 | 106 | 2 | 1 | 154 | 2 | 155 | 4.50e-20 | 81.6 |
| Msa1242200 | AT4G23670.1 | 32.886 | 149 | 98 | 2 | 3 | 150 | 4 | 151 | 4.60e-20 | 81.3 |
| Msa1242200 | AT2G01520.1 | 30.201 | 149 | 102 | 2 | 3 | 150 | 4 | 151 | 6.77e-19 | 78.6 |
| Msa1242200 | AT1G70880.1 | 30.667 | 150 | 100 | 4 | 2 | 148 | 8 | 156 | 6.61e-18 | 75.9 |
| Msa1242200 | AT4G14060.1 | 29.530 | 149 | 103 | 2 | 3 | 150 | 4 | 151 | 1.08e-17 | 75.1 |
| Msa1242200 | AT2G01530.1 | 29.530 | 149 | 103 | 2 | 3 | 150 | 4 | 151 | 3.57e-17 | 73.9 |
| Msa1242200 | AT1G14940.1 | 28.387 | 155 | 109 | 2 | 1 | 154 | 2 | 155 | 5.49e-17 | 73.6 |
| Msa1242200 | AT1G35260.1 | 30.137 | 146 | 97 | 4 | 6 | 148 | 6 | 149 | 9.84e-17 | 72.8 |
| Msa1242200 | AT4G23680.1 | 29.054 | 148 | 103 | 2 | 3 | 149 | 4 | 150 | 1.71e-16 | 72.0 |
| Msa1242200 | AT1G14950.1 | 28.758 | 153 | 107 | 2 | 3 | 154 | 4 | 155 | 4.97e-16 | 70.9 |
| Msa1242200 | AT1G30990.1 | 29.530 | 149 | 102 | 3 | 1 | 148 | 2 | 148 | 6.33e-16 | 70.9 |
| Msa1242200 | AT3G26450.1 | 28.000 | 150 | 105 | 3 | 3 | 150 | 4 | 152 | 5.44e-14 | 65.5 |
| Msa1242200 | AT1G14960.1 | 28.188 | 149 | 105 | 2 | 2 | 149 | 3 | 150 | 1.28e-13 | 64.7 |
| Msa1242200 | AT1G35310.1 | 27.338 | 139 | 97 | 4 | 12 | 148 | 12 | 148 | 3.11e-13 | 63.5 |
| Msa1242200 | AT3G26460.1 | 27.333 | 150 | 106 | 3 | 3 | 150 | 4 | 152 | 5.21e-13 | 63.2 |
| Msa1242200 | AT1G24020.1 | 29.814 | 161 | 88 | 5 | 2 | 149 | 3 | 151 | 1.16e-11 | 59.7 |
| Msa1242200 | AT1G24020.2 | 29.814 | 161 | 88 | 5 | 2 | 149 | 3 | 151 | 1.16e-11 | 59.7 |
Find 32 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 8_2:-26307798 | None:intergenic |
| AACATTAGCGAAAGAGTTCC+TGG | 0.390706 | 8_2:+26307773 | Msa1242200:CDS |
| AAGTTCAGTACTAAGTTTAC+CGG | 0.399540 | 8_2:-26307687 | None:intergenic |
| AACAAGTCCATCCAGCCATT+TGG | 0.409540 | 8_2:-26308348 | None:intergenic |
| ATCATTGAAGTAATTGATAA+TGG | 0.438898 | 8_2:+26308261 | Msa1242200:CDS |
| ATGGCAGTGGAGCTGCAAAA+TGG | 0.452179 | 8_2:+26308286 | Msa1242200:CDS |
| AAACTCACTTTCAAGCTCTT+CGG | 0.455962 | 8_2:+26308201 | Msa1242200:CDS |
| AATGGCTGGATGGACTTGTT+AGG | 0.459576 | 8_2:+26308351 | Msa1242200:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8_2:+26307842 | Msa1242200:CDS |
| CCTTCATGAAGTTTGGCACC+AGG | 0.490652 | 8_2:-26307791 | None:intergenic |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8_2:+26307801 | Msa1242200:CDS |
| AGACATTGATGAGCACTATA+AGG | 0.495099 | 8_2:+26308227 | Msa1242200:CDS |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8_2:+26307817 | Msa1242200:CDS |
| ATATTGACCCTCCAAATGGC+TGG | 0.527845 | 8_2:+26308337 | Msa1242200:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.539495 | 8_2:+26308333 | Msa1242200:CDS |
| GGTAAACTTAGTACTGAACT+TGG | 0.549891 | 8_2:+26307689 | Msa1242200:CDS |
| AAGTCCATCCAGCCATTTGG+AGG | 0.551025 | 8_2:-26308345 | None:intergenic |
| CTCACTTTCAAGCTCTTCGG+TGG | 0.553344 | 8_2:+26308204 | Msa1242200:CDS |
| TGACATCACAACAGATGGTA+AGG | 0.554203 | 8_2:+26308134 | Msa1242200:intron |
| ATTGATAATGGTGATGGCAG+TGG | 0.556824 | 8_2:+26308273 | Msa1242200:CDS |
| TGACCCTCCAAATGGCTGGA+TGG | 0.557517 | 8_2:+26308341 | Msa1242200:CDS |
| ATTGATCTTCTCATATTCAA+CGG | 0.576809 | 8_2:-26308310 | None:intergenic |
| AAATGGTGTAGTGTGCTCGC+CGG | 0.594337 | 8_2:+26307668 | None:intergenic |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 8_2:+26308390 | Msa1242200:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8_2:+26307828 | Msa1242200:CDS |
| GAAGTAATTGATAATGGTGA+TGG | 0.618480 | 8_2:+26308267 | Msa1242200:CDS |
| TAGTTTGAAGAACTTGTCGA+CGG | 0.618944 | 8_2:-26307723 | None:intergenic |
| GTAAACTTAGTACTGAACTT+GGG | 0.625486 | 8_2:+26307690 | Msa1242200:CDS |
| AGTTTGAAGAACTTGTCGAC+GGG | 0.627390 | 8_2:-26307722 | None:intergenic |
| CCTGGTGCCAAACTTCATGA+AGG | 0.632238 | 8_2:+26307791 | Msa1242200:CDS |
| AGTCCATCCAGCCATTTGGA+GGG | 0.644461 | 8_2:-26308344 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.699788 | 8_2:+26308314 | Msa1242200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATAAACAAGATGATA+TGG | - | chr8_2:26307900-26307919 | None:intergenic | 15.0% |
| !! | ATAGAGTAATGAAAAATATA+TGG | - | chr8_2:26308078-26308097 | None:intergenic | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+TGG | + | chr8_2:26308098-26308117 | Msa1242200:intron | 15.0% |
| !! | TATAAATAAACAAGATGATA+TGG | - | chr8_2:26307900-26307919 | None:intergenic | 15.0% |
| !! | ATAGAGTAATGAAAAATATA+TGG | - | chr8_2:26308078-26308097 | None:intergenic | 15.0% |
| !!! | ATACACTGTTTTAATTTAAT+TGG | + | chr8_2:26308098-26308117 | Msa1242200:intron | 15.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | - | chr8_2:26307930-26307949 | None:intergenic | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | + | chr8_2:26307931-26307950 | Msa1242200:intron | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | + | chr8_2:26307932-26307951 | Msa1242200:intron | 20.0% |
| !! | CATAATCTTCATATAAAGTA+TGG | - | chr8_2:26307959-26307978 | None:intergenic | 20.0% |
| !! | ACTTTATCTTTATCATCTTT+AGG | - | chr8_2:26307983-26308002 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | + | chr8_2:26308261-26308280 | Msa1242200:CDS | 20.0% |
| !! | TGCTCTTATTAATTGAATTA+AGG | - | chr8_2:26307930-26307949 | None:intergenic | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | + | chr8_2:26307931-26307950 | Msa1242200:intron | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | + | chr8_2:26307932-26307951 | Msa1242200:intron | 20.0% |
| !! | CATAATCTTCATATAAAGTA+TGG | - | chr8_2:26307959-26307978 | None:intergenic | 20.0% |
| !! | ACTTTATCTTTATCATCTTT+AGG | - | chr8_2:26307983-26308002 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | + | chr8_2:26308261-26308280 | Msa1242200:CDS | 20.0% |
| ! | AATAAACAAGATGATATGGA+GGG | - | chr8_2:26307896-26307915 | None:intergenic | 25.0% |
| ! | AAATAAACAAGATGATATGG+AGG | - | chr8_2:26307897-26307916 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | - | chr8_2:26308313-26308332 | None:intergenic | 25.0% |
| ! | AATAAACAAGATGATATGGA+GGG | - | chr8_2:26307896-26307915 | None:intergenic | 25.0% |
| ! | AAATAAACAAGATGATATGG+AGG | - | chr8_2:26307897-26307916 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | - | chr8_2:26308313-26308332 | None:intergenic | 25.0% |
| AAGTTCAGTACTAAGTTTAC+CGG | - | chr8_2:26307690-26307709 | None:intergenic | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | + | chr8_2:26307690-26307709 | Msa1242200:CDS | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | + | chr8_2:26308267-26308286 | Msa1242200:CDS | 30.0% |
| TGAATATGAGAAGATCAATG+AGG | + | chr8_2:26308314-26308333 | Msa1242200:CDS | 30.0% | |
| AAGTTCAGTACTAAGTTTAC+CGG | - | chr8_2:26307690-26307709 | None:intergenic | 30.0% | |
| ! | GTAAACTTAGTACTGAACTT+GGG | + | chr8_2:26307690-26307709 | Msa1242200:CDS | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | + | chr8_2:26308267-26308286 | Msa1242200:CDS | 30.0% |
| TGAATATGAGAAGATCAATG+AGG | + | chr8_2:26308314-26308333 | Msa1242200:CDS | 30.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | + | chr8_2:26307689-26307708 | Msa1242200:CDS | 35.0% |
| TAGTTTGAAGAACTTGTCGA+CGG | - | chr8_2:26307726-26307745 | None:intergenic | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8_2:26307801-26307820 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8_2:26307801-26307820 | Msa1242200:CDS | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr8_2:26307842-26307861 | Msa1242200:CDS | 35.0% | |
| AAACTCACTTTCAAGCTCTT+CGG | + | chr8_2:26308201-26308220 | Msa1242200:CDS | 35.0% | |
| AGACATTGATGAGCACTATA+AGG | + | chr8_2:26308227-26308246 | Msa1242200:CDS | 35.0% | |
| ! | GGTAAACTTAGTACTGAACT+TGG | + | chr8_2:26307689-26307708 | Msa1242200:CDS | 35.0% |
| TAGTTTGAAGAACTTGTCGA+CGG | - | chr8_2:26307726-26307745 | None:intergenic | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8_2:26307801-26307820 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8_2:26307801-26307820 | Msa1242200:CDS | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr8_2:26307842-26307861 | Msa1242200:CDS | 35.0% | |
| AAACTCACTTTCAAGCTCTT+CGG | + | chr8_2:26308201-26308220 | Msa1242200:CDS | 35.0% | |
| AGACATTGATGAGCACTATA+AGG | + | chr8_2:26308227-26308246 | Msa1242200:CDS | 35.0% | |
| AGTTTGAAGAACTTGTCGAC+GGG | - | chr8_2:26307725-26307744 | None:intergenic | 40.0% | |
| AACATTAGCGAAAGAGTTCC+TGG | + | chr8_2:26307773-26307792 | Msa1242200:CDS | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8_2:26307817-26307836 | Msa1242200:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8_2:26307828-26307847 | Msa1242200:CDS | 40.0% |
| ACCATCTGTTGTGATGTCAA+GGG | - | chr8_2:26308133-26308152 | None:intergenic | 40.0% | |
| TACCATCTGTTGTGATGTCA+AGG | - | chr8_2:26308134-26308153 | None:intergenic | 40.0% | |
| TGACATCACAACAGATGGTA+AGG | + | chr8_2:26308134-26308153 | Msa1242200:intron | 40.0% | |
| !! | ATTGATAATGGTGATGGCAG+TGG | + | chr8_2:26308273-26308292 | Msa1242200:CDS | 40.0% |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8_2:26308390-26308409 | Msa1242200:CDS | 40.0% | |
| AGTTTGAAGAACTTGTCGAC+GGG | - | chr8_2:26307725-26307744 | None:intergenic | 40.0% | |
| AACATTAGCGAAAGAGTTCC+TGG | + | chr8_2:26307773-26307792 | Msa1242200:CDS | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8_2:26307817-26307836 | Msa1242200:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8_2:26307828-26307847 | Msa1242200:CDS | 40.0% |
| ACCATCTGTTGTGATGTCAA+GGG | - | chr8_2:26308133-26308152 | None:intergenic | 40.0% | |
| TACCATCTGTTGTGATGTCA+AGG | - | chr8_2:26308134-26308153 | None:intergenic | 40.0% | |
| TGACATCACAACAGATGGTA+AGG | + | chr8_2:26308134-26308153 | Msa1242200:intron | 40.0% | |
| !! | ATTGATAATGGTGATGGCAG+TGG | + | chr8_2:26308273-26308292 | Msa1242200:CDS | 40.0% |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8_2:26308390-26308409 | Msa1242200:CDS | 40.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8_2:26308333-26308352 | Msa1242200:CDS | 45.0% | |
| ATATTGACCCTCCAAATGGC+TGG | + | chr8_2:26308337-26308356 | Msa1242200:CDS | 45.0% | |
| AACAAGTCCATCCAGCCATT+TGG | - | chr8_2:26308351-26308370 | None:intergenic | 45.0% | |
| ! | AATGGCTGGATGGACTTGTT+AGG | + | chr8_2:26308351-26308370 | Msa1242200:CDS | 45.0% |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8_2:26308333-26308352 | Msa1242200:CDS | 45.0% | |
| ATATTGACCCTCCAAATGGC+TGG | + | chr8_2:26308337-26308356 | Msa1242200:CDS | 45.0% | |
| AACAAGTCCATCCAGCCATT+TGG | - | chr8_2:26308351-26308370 | None:intergenic | 45.0% | |
| ! | AATGGCTGGATGGACTTGTT+AGG | + | chr8_2:26308351-26308370 | Msa1242200:CDS | 45.0% |
| CCTTCATGAAGTTTGGCACC+AGG | - | chr8_2:26307794-26307813 | None:intergenic | 50.0% | |
| ! | CCTGGTGCCAAACTTCATGA+AGG | + | chr8_2:26307791-26307810 | Msa1242200:CDS | 50.0% |
| GCCCTTGACATCACAACAGA+TGG | + | chr8_2:26308129-26308148 | Msa1242200:intron | 50.0% | |
| CTCACTTTCAAGCTCTTCGG+TGG | + | chr8_2:26308204-26308223 | Msa1242200:CDS | 50.0% | |
| ATGGCAGTGGAGCTGCAAAA+TGG | + | chr8_2:26308286-26308305 | Msa1242200:CDS | 50.0% | |
| AGTCCATCCAGCCATTTGGA+GGG | - | chr8_2:26308347-26308366 | None:intergenic | 50.0% | |
| AAGTCCATCCAGCCATTTGG+AGG | - | chr8_2:26308348-26308367 | None:intergenic | 50.0% | |
| CCTTCATGAAGTTTGGCACC+AGG | - | chr8_2:26307794-26307813 | None:intergenic | 50.0% | |
| ! | CCTGGTGCCAAACTTCATGA+AGG | + | chr8_2:26307791-26307810 | Msa1242200:CDS | 50.0% |
| GCCCTTGACATCACAACAGA+TGG | + | chr8_2:26308129-26308148 | Msa1242200:intron | 50.0% | |
| CTCACTTTCAAGCTCTTCGG+TGG | + | chr8_2:26308204-26308223 | Msa1242200:CDS | 50.0% | |
| ATGGCAGTGGAGCTGCAAAA+TGG | + | chr8_2:26308286-26308305 | Msa1242200:CDS | 50.0% | |
| AGTCCATCCAGCCATTTGGA+GGG | - | chr8_2:26308347-26308366 | None:intergenic | 50.0% | |
| AAGTCCATCCAGCCATTTGG+AGG | - | chr8_2:26308348-26308367 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTGGA+TGG | + | chr8_2:26308341-26308360 | Msa1242200:CDS | 55.0% | |
| TGACCCTCCAAATGGCTGGA+TGG | + | chr8_2:26308341-26308360 | Msa1242200:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 26307680 | 26308428 | 26307680 | ID=Msa1242200;Name=Msa1242200 |
| chr8_2 | mRNA | 26307680 | 26308428 | 26307680 | ID=Msa1242200-mRNA-1;Parent=Msa1242200;Name=Msa1242200-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|1|0.5|1|1|0.5|2|0|155 |
| chr8_2 | exon | 26307680 | 26307863 | 26307680 | ID=Msa1242200-mRNA-1:exon:9275;Parent=Msa1242200-mRNA-1 |
| chr8_2 | exon | 26308148 | 26308428 | 26308148 | ID=Msa1242200-mRNA-1:exon:9276;Parent=Msa1242200-mRNA-1 |
| chr8_2 | CDS | 26307680 | 26307863 | 26307680 | ID=Msa1242200-mRNA-1:cds;Parent=Msa1242200-mRNA-1 |
| chr8_2 | CDS | 26308148 | 26308428 | 26308148 | ID=Msa1242200-mRNA-1:cds;Parent=Msa1242200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
