Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0910670 | XP_013451833.1 | 89.055 | 667 | 44 | 8 | 1 | 659 | 1 | 646 | 0.0 | 813 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0910670 | sp|Q9C6K3|DF1_ARATH | 56.173 | 324 | 96 | 6 | 43 | 359 | 49 | 333 | 7.69e-92 | 300 |
Msa0910670 | sp|Q9C6K3|DF1_ARATH | 65.584 | 154 | 38 | 3 | 458 | 598 | 382 | 533 | 3.62e-59 | 212 |
Msa0910670 | sp|Q9C6K3|DF1_ARATH | 46.739 | 92 | 48 | 1 | 50 | 140 | 403 | 494 | 3.35e-18 | 92.4 |
Msa0910670 | sp|Q9C6K3|DF1_ARATH | 47.253 | 91 | 47 | 1 | 479 | 569 | 60 | 149 | 6.03e-18 | 91.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0910670 | TF | Trihelix |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0627030 | Msa0910670 | 0.805609 | 1.228972e-49 | -8.615850e-47 |
Msa0229940 | Msa0910670 | 0.814505 | 1.489192e-51 | -8.615850e-47 |
Msa0910670 | Msa0959960 | 0.944675 | 1.261282e-103 | -8.615850e-47 |
Msa0910670 | Msa0985550 | 0.931610 | 2.926754e-94 | -8.615850e-47 |
Msa0910670 | Msa1438450 | 0.803554 | 3.297690e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0910670 | MtrunA17_Chr6g0463941 | 89.055 | 667 | 44 | 8 | 1 | 659 | 1 | 646 | 0.0 | 813 |
Msa0910670 | MtrunA17_Chr1g0201941 | 55.132 | 682 | 228 | 19 | 1 | 655 | 1 | 631 | 0.0 | 594 |
Msa0910670 | MtrunA17_Chr1g0201911 | 41.791 | 603 | 238 | 14 | 2 | 600 | 3 | 496 | 1.45e-125 | 383 |
Msa0910670 | MtrunA17_Chr1g0198171 | 52.756 | 127 | 55 | 2 | 54 | 175 | 113 | 239 | 7.24e-35 | 139 |
Msa0910670 | MtrunA17_Chr1g0198171 | 45.652 | 92 | 48 | 2 | 476 | 566 | 110 | 200 | 3.16e-19 | 91.3 |
Msa0910670 | MtrunA17_Chr2g0290511 | 31.597 | 288 | 145 | 7 | 281 | 568 | 115 | 350 | 9.01e-35 | 135 |
Msa0910670 | MtrunA17_Chr2g0290511 | 39.796 | 98 | 56 | 2 | 54 | 149 | 261 | 357 | 1.35e-16 | 82.4 |
Msa0910670 | MtrunA17_Chr7g0265831 | 62.500 | 104 | 33 | 3 | 46 | 145 | 108 | 209 | 3.96e-33 | 133 |
Msa0910670 | MtrunA17_Chr7g0265831 | 44.330 | 97 | 52 | 2 | 476 | 571 | 111 | 206 | 1.09e-18 | 89.7 |
Msa0910670 | MtrunA17_Chr7g0265831 | 42.500 | 80 | 46 | 0 | 277 | 356 | 285 | 364 | 4.19e-12 | 68.9 |
Msa0910670 | MtrunA17_Chr1g0179191 | 64.583 | 96 | 31 | 2 | 46 | 140 | 124 | 217 | 4.37e-32 | 130 |
Msa0910670 | MtrunA17_Chr1g0179191 | 46.237 | 93 | 48 | 2 | 476 | 567 | 127 | 218 | 3.22e-19 | 91.7 |
Msa0910670 | MtrunA17_Chr1g0179191 | 37.383 | 107 | 67 | 0 | 251 | 357 | 264 | 370 | 3.03e-14 | 75.9 |
Msa0910670 | MtrunA17_Chr7g0273941 | 57.000 | 100 | 34 | 2 | 480 | 570 | 381 | 480 | 1.77e-28 | 119 |
Msa0910670 | MtrunA17_Chr7g0273941 | 41.837 | 98 | 47 | 2 | 55 | 142 | 381 | 478 | 5.98e-16 | 81.3 |
Msa0910670 | MtrunA17_Chr1g0190851 | 59.783 | 92 | 35 | 1 | 480 | 569 | 418 | 509 | 1.26e-26 | 114 |
Msa0910670 | MtrunA17_Chr1g0190851 | 39.785 | 93 | 53 | 2 | 53 | 142 | 416 | 508 | 4.89e-14 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0910670 | AT1G76880.1 | 56.173 | 324 | 96 | 6 | 43 | 359 | 49 | 333 | 7.82e-93 | 300 |
Msa0910670 | AT1G76880.1 | 65.584 | 154 | 38 | 3 | 458 | 598 | 382 | 533 | 3.68e-60 | 212 |
Msa0910670 | AT1G76880.1 | 46.739 | 92 | 48 | 1 | 50 | 140 | 403 | 494 | 3.40e-19 | 92.4 |
Msa0910670 | AT1G76880.1 | 47.253 | 91 | 47 | 1 | 479 | 569 | 60 | 149 | 6.12e-19 | 91.7 |
Msa0910670 | AT1G76890.2 | 48.750 | 320 | 131 | 7 | 52 | 357 | 38 | 338 | 1.28e-81 | 269 |
Msa0910670 | AT1G76890.2 | 64.029 | 139 | 40 | 3 | 459 | 597 | 378 | 506 | 4.23e-49 | 181 |
Msa0910670 | AT1G76890.2 | 44.565 | 92 | 50 | 1 | 52 | 142 | 394 | 485 | 1.77e-19 | 93.2 |
Msa0910670 | AT1G76890.2 | 43.182 | 88 | 49 | 1 | 479 | 566 | 40 | 126 | 5.39e-17 | 85.1 |
Msa0910670 | AT5G28300.1 | 36.789 | 299 | 139 | 9 | 281 | 569 | 300 | 558 | 2.62e-44 | 168 |
Msa0910670 | AT5G28300.1 | 41.667 | 108 | 52 | 4 | 48 | 144 | 452 | 559 | 2.39e-15 | 80.1 |
Msa0910670 | AT5G03680.1 | 34.202 | 307 | 142 | 7 | 55 | 356 | 119 | 370 | 7.55e-44 | 166 |
Msa0910670 | AT5G03680.1 | 44.211 | 95 | 51 | 2 | 480 | 573 | 119 | 212 | 4.98e-19 | 91.7 |
Msa0910670 | AT1G33240.3 | 59.649 | 114 | 35 | 1 | 54 | 167 | 61 | 163 | 1.76e-38 | 151 |
Msa0910670 | AT1G33240.1 | 59.649 | 114 | 35 | 1 | 54 | 167 | 61 | 163 | 3.55e-38 | 151 |
Msa0910670 | AT3G10000.1 | 57.143 | 105 | 43 | 2 | 38 | 140 | 71 | 175 | 1.55e-30 | 126 |
Msa0910670 | AT3G10000.1 | 44.086 | 93 | 51 | 1 | 476 | 567 | 84 | 176 | 1.59e-20 | 95.9 |
Msa0910670 | AT3G10000.2 | 53.846 | 104 | 38 | 2 | 38 | 140 | 71 | 165 | 8.73e-27 | 114 |
Msa0910670 | AT3G10000.2 | 41.304 | 92 | 45 | 1 | 476 | 567 | 84 | 166 | 2.11e-17 | 85.9 |
Msa0910670 | AT5G47660.1 | 51.685 | 89 | 41 | 1 | 480 | 568 | 303 | 389 | 8.45e-22 | 98.6 |
Msa0910670 | AT5G47660.1 | 47.059 | 85 | 40 | 3 | 55 | 137 | 303 | 384 | 4.72e-14 | 75.1 |
Msa0910670 | AT1G33240.2 | 54.430 | 79 | 25 | 1 | 89 | 167 | 57 | 124 | 1.28e-18 | 90.5 |
Msa0910670 | AT1G33240.2 | 37.815 | 119 | 72 | 2 | 55 | 171 | 396 | 514 | 2.09e-18 | 89.7 |
Find 228 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAAAGATGCAAGTGTTAA+AGG | 0.172516 | 6_2:+15523736 | Msa0910670:CDS |
TTCAGGTTTGATGAAGAAAA+TGG | 0.194543 | 6_2:+15526099 | Msa0910670:CDS |
CCATTATGGGAGGAGATTTC+AGG | 0.224552 | 6_2:+15526082 | Msa0910670:CDS |
TTTACCACCTCTTCCTTCTT+TGG | 0.238671 | 6_2:-15524913 | None:intergenic |
CATGTTTAAGATGTTGTAAA+TGG | 0.243597 | 6_2:+15526909 | Msa0910670:three_prime_UTR |
ATGGACCTAAAGGGCCATTA+TGG | 0.251711 | 6_2:+15526068 | Msa0910670:CDS |
TCGGTGTCGGTGTTGGTGTT+GGG | 0.265380 | 6_2:-15525718 | None:intergenic |
GATATGAAGTACCAAGAAAA+TGG | 0.297874 | 6_2:+15526049 | Msa0910670:CDS |
GGACATGTCTTTGAATCTTC+TGG | 0.297895 | 6_2:-15526211 | None:intergenic |
TCCTCCCATAATGGCCCTTT+AGG | 0.309914 | 6_2:-15526073 | None:intergenic |
GTTGTTGTTGATGATGGTAT+TGG | 0.315589 | 6_2:-15525200 | None:intergenic |
AACAGGCGCCACCAGCAGCC+AGG | 0.316128 | 6_2:+15526365 | Msa0910670:CDS |
CAACAGTCCATGCACTCTTT+TGG | 0.333863 | 6_2:-15526595 | None:intergenic |
AATATATACATAGGGGTAGA+AGG | 0.335502 | 6_2:+15526694 | Msa0910670:three_prime_UTR |
GGTGGTGGTGGATCAATTTC+AGG | 0.335799 | 6_2:+15523586 | Msa0910670:CDS |
GGAGTTGCACAAGAGGTTCT+TGG | 0.339414 | 6_2:+15525448 | Msa0910670:CDS |
GTCGGTGTCGGTGTTGGTGT+TGG | 0.352301 | 6_2:-15525719 | None:intergenic |
GTCACATCCGCCCTGGCTGC+TGG | 0.353901 | 6_2:-15526376 | None:intergenic |
TACTTTGGCTAATAGGAAAA+TGG | 0.355696 | 6_2:+15524815 | Msa0910670:intron |
GTTGAAGATAAGGTCTGATA+TGG | 0.365393 | 6_2:+15523705 | Msa0910670:CDS |
AGAGGGTTATTAGTATTTGT+AGG | 0.377717 | 6_2:-15525230 | None:intergenic |
TACTAAAGATGCTGCTGTTA+TGG | 0.378392 | 6_2:+15525589 | Msa0910670:CDS |
GCTAAATAAATAAGTTCATA+AGG | 0.379541 | 6_2:+15526804 | Msa0910670:three_prime_UTR |
AAAGCAACTGTTTCTTGTCT+TGG | 0.384139 | 6_2:-15523682 | None:intergenic |
TCAGGTTTGATGAAGAAAAT+GGG | 0.384923 | 6_2:+15526100 | Msa0910670:CDS |
AATAGGAAAATGGCAGATCT+TGG | 0.385060 | 6_2:+15524825 | Msa0910670:intron |
CAAGTGTTAAAGGTCCCTTA+TGG | 0.386222 | 6_2:+15523746 | Msa0910670:CDS |
TTGAGGTGGTGGTGGTTTGT+TGG | 0.387596 | 6_2:-15526515 | None:intergenic |
ACTGGCAATGGTGCTGCTGC+TGG | 0.390612 | 6_2:-15525743 | None:intergenic |
GCAATGGCCTCCACAACAAC+AGG | 0.393419 | 6_2:+15526348 | Msa0910670:CDS |
TGAAGAAAATGGGGTACAAT+AGG | 0.394111 | 6_2:+15526110 | Msa0910670:CDS |
ACAGCAGCAAGTGACGAATA+TGG | 0.394354 | 6_2:+15525922 | Msa0910670:CDS |
TGCAAAGGATTAATAGAGAA+AGG | 0.396339 | 6_2:+15525534 | Msa0910670:CDS |
CAAAGAGGTGCAAAGAGAAA+TGG | 0.396790 | 6_2:+15526137 | Msa0910670:CDS |
AGAAATGAAGCTGTAGTTGT+AGG | 0.397339 | 6_2:-15525071 | None:intergenic |
ACATTGGTGGTAGGTGGTGG+TGG | 0.399332 | 6_2:+15526655 | Msa0910670:three_prime_UTR |
CCTGAAATCTCCTCCCATAA+TGG | 0.399545 | 6_2:-15526082 | None:intergenic |
AACGATGATGGCACCGTTGA+TGG | 0.403172 | 6_2:+15526312 | Msa0910670:CDS |
GTCGGTGTTGGTGTTGGGGT+TGG | 0.406448 | 6_2:-15525713 | None:intergenic |
CCACCTACCACCAATGTTGC+CGG | 0.409689 | 6_2:-15526649 | None:intergenic |
CAGTTGCTTTGTTGAAGATA+AGG | 0.412788 | 6_2:+15523695 | Msa0910670:CDS |
GACTCAACAGTGTTGGGAAC+AGG | 0.413588 | 6_2:+15523523 | Msa0910670:CDS |
GAAATGAAGCTGTAGTTGTA+GGG | 0.418405 | 6_2:-15525070 | None:intergenic |
CCTTGAAACTTCATCCCATA+AGG | 0.419165 | 6_2:-15523761 | None:intergenic |
GGAACAGGAGGAGGCAGCTC+AGG | 0.420665 | 6_2:+15523538 | Msa0910670:CDS |
ACAGTACATAACATTATTCA+AGG | 0.420806 | 6_2:-15526868 | None:intergenic |
GAGGGTGTGGATAGAAGTTT+TGG | 0.422223 | 6_2:+15523646 | Msa0910670:CDS |
AAGTTCGTCTTCGACTTCTT+CGG | 0.423944 | 6_2:+15525322 | Msa0910670:CDS |
GTAATAGTAATTTGAGGAAG+AGG | 0.435660 | 6_2:-15525248 | None:intergenic |
TGTGTGTAAGACATTGGAAT+TGG | 0.436193 | 6_2:-15525155 | None:intergenic |
ACCAACTTGATGCTCTATAC+AGG | 0.438141 | 6_2:+15526242 | Msa0910670:CDS |
AGGGGTGGGAATAGTACTAA+TGG | 0.438142 | 6_2:-15525051 | None:intergenic |
ATGTTTAAGATGTTGTAAAT+GGG | 0.443404 | 6_2:+15526910 | Msa0910670:three_prime_UTR |
TGGACCTAAAGGGCCATTAT+GGG | 0.446325 | 6_2:+15526069 | Msa0910670:CDS |
AATGGGAGAAACCATTGATT+GGG | 0.446514 | 6_2:+15526927 | Msa0910670:three_prime_UTR |
TGTGTTTGTGTTTGAGTTGG+TGG | 0.448747 | 6_2:-15525023 | None:intergenic |
GGTATTGCTGGTATTGGTAT+TGG | 0.450653 | 6_2:-15525782 | None:intergenic |
ACGGTGTTGTTGTTCAATAC+AGG | 0.451355 | 6_2:-15525653 | None:intergenic |
AAATGGGAGAAACCATTGAT+TGG | 0.451715 | 6_2:+15526926 | Msa0910670:three_prime_UTR |
AAGTGTTAAAGGTCCCTTAT+GGG | 0.453094 | 6_2:+15523747 | Msa0910670:CDS |
GACGGAAGAGGAAGAGGAAA+TGG | 0.453743 | 6_2:+15525378 | Msa0910670:CDS |
GTTTGTGTTTGTGTTTGAGT+TGG | 0.456148 | 6_2:-15525026 | None:intergenic |
CGAATCGACGGAAGAGGAAG+AGG | 0.460674 | 6_2:+15525372 | Msa0910670:CDS |
GGTGTAGGTATTGCTGGTAT+TGG | 0.461156 | 6_2:-15525788 | None:intergenic |
AGCTGCTGCGTCGAGGCCTG+AGG | 0.462044 | 6_2:+15526288 | Msa0910670:CDS |
GTTGGTGGTGGTGTTATTGA+AGG | 0.463101 | 6_2:-15525008 | None:intergenic |
AAAGAAATAACATATAATCT+TGG | 0.464341 | 6_2:-15526749 | None:intergenic |
AATGGTGCTGCTGCTGGTGT+CGG | 0.467443 | 6_2:-15525737 | None:intergenic |
GCTGCTGCTGGTGTCGGTGT+CGG | 0.467777 | 6_2:-15525731 | None:intergenic |
CCTTATGGGATGAAGTTTCA+AGG | 0.471695 | 6_2:+15523761 | Msa0910670:CDS |
GCATCAAGTTGGTGAAAGTA+AGG | 0.472098 | 6_2:-15526232 | None:intergenic |
CTAGGGGACTCAACAGTGTT+GGG | 0.473609 | 6_2:+15523517 | Msa0910670:CDS |
TGTGGAGGCCATTGCTGCTC+CGG | 0.474042 | 6_2:-15526340 | None:intergenic |
GGCAATGGTACTGCTGGTAC+TGG | 0.477694 | 6_2:-15525761 | None:intergenic |
TGGAAGTAGTAGAAATGAAG+AGG | 0.480126 | 6_2:+15523627 | Msa0910670:CDS |
GCAAAGGATTAATAGAGAAA+GGG | 0.481748 | 6_2:+15525535 | Msa0910670:CDS |
TACCAAGAAAATGGACCTAA+AGG | 0.481995 | 6_2:+15526058 | Msa0910670:CDS |
GCTGGTGGCGCCTGTTGTTG+TGG | 0.482373 | 6_2:-15526358 | None:intergenic |
TTTCTTTGAGAGACTAATGA+AGG | 0.482390 | 6_2:+15525406 | Msa0910670:CDS |
CTTGAAACTTCATCCCATAA+GGG | 0.483873 | 6_2:-15523760 | None:intergenic |
TAGTAGAAATGAAGAGGGTG+TGG | 0.484511 | 6_2:+15523633 | Msa0910670:CDS |
GAGGGTTATTAGTATTTGTA+GGG | 0.485687 | 6_2:-15525229 | None:intergenic |
TGGTGGAAAATGTGTAGGGT+TGG | 0.486037 | 6_2:-15525180 | None:intergenic |
AAATAAGTTCATAAGGGAGA+TGG | 0.486341 | 6_2:+15526811 | Msa0910670:three_prime_UTR |
CGGTGTCGGTGTTGGTGTTG+GGG | 0.486815 | 6_2:-15525717 | None:intergenic |
GGAAACGACAACAATGGAAG+GGG | 0.487557 | 6_2:+15525346 | Msa0910670:CDS |
AATAAGTTCATAAGGGAGAT+GGG | 0.488356 | 6_2:+15526812 | Msa0910670:three_prime_UTR |
CTCCATGGTCACATCCGCCC+TGG | 0.491677 | 6_2:-15526383 | None:intergenic |
ATAGGAAAATGGCAGATCTT+GGG | 0.492836 | 6_2:+15524826 | Msa0910670:intron |
ACCAAGAAAATGGACCTAAA+GGG | 0.493139 | 6_2:+15526059 | Msa0910670:CDS |
ACATCAGCAGCAGCAACAAC+AGG | 0.496241 | 6_2:+15525889 | Msa0910670:CDS |
GCAGCAGCAACAACAGGTTC+AGG | 0.497898 | 6_2:+15525895 | Msa0910670:CDS |
GCTGGTGTCGGTGTCGGTGT+TGG | 0.501369 | 6_2:-15525725 | None:intergenic |
GGCAGCTCAGGAGATGGAGC+AGG | 0.501746 | 6_2:+15523550 | Msa0910670:CDS |
GGGGATCGAATCGACGGAAG+AGG | 0.501747 | 6_2:+15525366 | Msa0910670:CDS |
GGAATTGGAAGTGTAGTTGA+TGG | 0.503022 | 6_2:-15525140 | None:intergenic |
TGTTGCGGTGTAGGTATTGC+TGG | 0.503047 | 6_2:-15525794 | None:intergenic |
TAAGATAAAGAAAATAATAG+AGG | 0.504671 | 6_2:+15526839 | Msa0910670:three_prime_UTR |
GCAACATTGGTGGTAGGTGG+TGG | 0.504677 | 6_2:+15526652 | Msa0910670:three_prime_UTR |
GGCACCGTTGATGGTTCAGC+CGG | 0.506059 | 6_2:+15526321 | Msa0910670:CDS |
TGTTGCTGCTGCTGATGTTG+TGG | 0.506243 | 6_2:-15525884 | None:intergenic |
GAAGGTGATTGATGCATTGA+AGG | 0.506401 | 6_2:-15524990 | None:intergenic |
AAAGAGGTGCAAAGAGAAAT+GGG | 0.507157 | 6_2:+15526138 | Msa0910670:CDS |
CTAAATAAATAAGTTCATAA+GGG | 0.509862 | 6_2:+15526805 | Msa0910670:three_prime_UTR |
GTTTGAACTTGTTGCGGTGT+AGG | 0.516119 | 6_2:-15525803 | None:intergenic |
CACTCCTATGCAGCTATGCT+AGG | 0.516756 | 6_2:+15523499 | Msa0910670:exon |
GGCAACGACACCGGCAACAT+TGG | 0.518399 | 6_2:+15526639 | Msa0910670:three_prime_UTR |
AACAGCACCGGTCATTCCTC+AGG | 0.519741 | 6_2:+15525850 | Msa0910670:CDS |
CACCACCACCTCAATAAAAG+AGG | 0.521765 | 6_2:+15526524 | Msa0910670:exon |
GGTGCCATCATCGTTCCCTC+AGG | 0.524674 | 6_2:-15526304 | None:intergenic |
ACTCCTATGCAGCTATGCTA+GGG | 0.525198 | 6_2:+15523500 | Msa0910670:exon |
GAGGTGCTAGAGAAGAAGCT+TGG | 0.525337 | 6_2:+15525498 | Msa0910670:CDS |
GAGAAAAGAGAAAGAGAGAG+AGG | 0.527477 | 6_2:+15525479 | Msa0910670:CDS |
TGGTTCAGCCGGAGCAGCAA+TGG | 0.528420 | 6_2:+15526332 | Msa0910670:CDS |
GCTAGGGGACTCAACAGTGT+TGG | 0.529101 | 6_2:+15523516 | Msa0910670:CDS |
ACAGTGTTGGGAACAGGAGG+AGG | 0.532710 | 6_2:+15523529 | Msa0910670:CDS |
TTGAATGAGGCTCTAGGTGG+GGG | 0.533373 | 6_2:+15526572 | Msa0910670:three_prime_UTR |
TGATGCATGCAAGTTCATCT+AGG | 0.535689 | 6_2:+15525978 | Msa0910670:CDS |
AACAAGAGGAGTTGCACAAG+AGG | 0.535913 | 6_2:+15525441 | Msa0910670:CDS |
GAAATATTAGCGAATGAAGA+TGG | 0.536488 | 6_2:-15525278 | None:intergenic |
TGTTGTTGCACTGTTACAGT+TGG | 0.536680 | 6_2:-15525827 | None:intergenic |
GCTGCTGCGTCGAGGCCTGA+GGG | 0.536821 | 6_2:+15526289 | Msa0910670:CDS |
GCTTACCATGATGGTGGTGG+TGG | 0.537546 | 6_2:+15523574 | Msa0910670:CDS |
AACGACACCGGCAACATTGG+TGG | 0.538181 | 6_2:+15526642 | Msa0910670:three_prime_UTR |
ACATCCGCCCTGGCTGCTGG+TGG | 0.538679 | 6_2:-15526373 | None:intergenic |
GGGGTGGGAATAGTACTAAT+GGG | 0.539998 | 6_2:-15525050 | None:intergenic |
TGCTCCGGCTGAACCATCAA+CGG | 0.540154 | 6_2:-15526325 | None:intergenic |
TAATAGTAATTTGAGGAAGA+GGG | 0.542471 | 6_2:-15525247 | None:intergenic |
GGTATTGGTGGAAAATGTGT+AGG | 0.543430 | 6_2:-15525185 | None:intergenic |
GGCGAAGCCTGAGGAATGAC+CGG | 0.543584 | 6_2:-15525857 | None:intergenic |
GAGGCCTGAGGGAACGATGA+TGG | 0.544953 | 6_2:+15526300 | Msa0910670:CDS |
GGAGGAGGCAGCTCAGGAGA+TGG | 0.546943 | 6_2:+15523544 | Msa0910670:CDS |
GGAGGTGTAGAGTTTAACAA+TGG | 0.547437 | 6_2:-15525104 | None:intergenic |
TGGAGGATGCTGAGAATGAT+CGG | 0.547559 | 6_2:+15526401 | Msa0910670:CDS |
TGAAGGAAAGCAACAAGAAG+AGG | 0.547925 | 6_2:+15526188 | Msa0910670:CDS |
GTTTGTGTTTGAGTTGGTGG+TGG | 0.548570 | 6_2:-15525020 | None:intergenic |
GGAAGAGGTGGTAAATCAGA+TGG | 0.550653 | 6_2:+15524921 | Msa0910670:CDS |
TTGGATTGTGTGTAAGACAT+TGG | 0.551286 | 6_2:-15525161 | None:intergenic |
ACAGGCGCCACCAGCAGCCA+GGG | 0.555235 | 6_2:+15526366 | Msa0910670:CDS |
GTGCTAGAGAAGAAGCTTGG+AGG | 0.555286 | 6_2:+15525501 | Msa0910670:CDS |
TTGTTGTTGTTGAGGAATGA+CGG | 0.557825 | 6_2:-15525672 | None:intergenic |
TATTAGCGAATGAAGATGGT+GGG | 0.558390 | 6_2:-15525274 | None:intergenic |
GTTGTTGATGATGGTATTGG+TGG | 0.559014 | 6_2:-15525197 | None:intergenic |
CAATCATTGAATGAGGCTCT+AGG | 0.559014 | 6_2:+15526566 | Msa0910670:three_prime_UTR |
ATATATACATAGGGGTAGAA+GGG | 0.559541 | 6_2:+15526695 | Msa0910670:three_prime_UTR |
TGCTGCTGATGTTGTGGCAA+CGG | 0.560332 | 6_2:-15525878 | None:intergenic |
TGAAGCTGTAGTTGTAGGGG+TGG | 0.560356 | 6_2:-15525066 | None:intergenic |
GTAAGCGGCGGCAACGACAC+CGG | 0.561717 | 6_2:+15526630 | Msa0910670:three_prime_UTR |
GAGGAAACGACAACAATGGA+AGG | 0.562272 | 6_2:+15525344 | Msa0910670:CDS |
TGCGGCGCTTGTTGTTGTTG+AGG | 0.562772 | 6_2:-15525680 | None:intergenic |
TCAACAACAACAAGCGCCGC+AGG | 0.568754 | 6_2:+15525682 | Msa0910670:CDS |
ATTAGCGAATGAAGATGGTG+GGG | 0.569029 | 6_2:-15525273 | None:intergenic |
TATCACAAGAGAACCAAAGA+AGG | 0.569305 | 6_2:+15524900 | Msa0910670:CDS |
GGAGGTTGCAAGAGATGCAA+AGG | 0.569352 | 6_2:+15525519 | Msa0910670:CDS |
TGATCGGCCGCGTCGAGATG+AGG | 0.570258 | 6_2:+15526417 | Msa0910670:CDS |
TTTCAGGTGATGATGAAAGA+GGG | 0.571339 | 6_2:+15523602 | Msa0910670:CDS |
TTGATCCACCACCACCATCA+TGG | 0.573497 | 6_2:-15523579 | None:intergenic |
AAGAGAACCAAAGAAGGAAG+AGG | 0.573797 | 6_2:+15524906 | Msa0910670:CDS |
TTCATTCGCTAATATTTCAG+CGG | 0.578885 | 6_2:+15525283 | Msa0910670:CDS |
TTCGTCTTCGACTTCTTCGG+AGG | 0.579514 | 6_2:+15525325 | Msa0910670:CDS |
CAGGCAGAAGAACAAGGTGG+AGG | 0.580136 | 6_2:+15526261 | Msa0910670:CDS |
CAGGTTTGATGAAGAAAATG+GGG | 0.580467 | 6_2:+15526101 | Msa0910670:CDS |
TTGTAATCAATCATTGAATG+AGG | 0.581195 | 6_2:+15526559 | Msa0910670:three_prime_UTR |
GCTGGTATTGGTATTGGCAA+TGG | 0.581527 | 6_2:-15525776 | None:intergenic |
GGTATTGGCAATGGTACTGC+TGG | 0.582926 | 6_2:-15525767 | None:intergenic |
AAATGAAGCTGTAGTTGTAG+GGG | 0.584207 | 6_2:-15525069 | None:intergenic |
GGTACTGCTGGTACTGGCAA+TGG | 0.588980 | 6_2:-15525755 | None:intergenic |
CATTGAATGAGGCTCTAGGT+GGG | 0.589147 | 6_2:+15526570 | Msa0910670:three_prime_UTR |
GGAGCAGGAGCTTACCATGA+TGG | 0.589395 | 6_2:+15523565 | Msa0910670:CDS |
GTCCCCTAGCATAGCTGCAT+AGG | 0.589597 | 6_2:-15523503 | None:intergenic |
ATTTCAGGTGATGATGAAAG+AGG | 0.592121 | 6_2:+15523601 | Msa0910670:CDS |
GGGAGAAACCATTGATTGGG+GGG | 0.594065 | 6_2:+15526930 | Msa0910670:three_prime_UTR |
AGAACCAAAGAAGGAAGAGG+TGG | 0.595193 | 6_2:+15524909 | Msa0910670:CDS |
ATCATTCTCAGCATCCTCCA+TGG | 0.595759 | 6_2:-15526398 | None:intergenic |
ATTGAATGAGGCTCTAGGTG+GGG | 0.596893 | 6_2:+15526571 | Msa0910670:three_prime_UTR |
GATGACGAGGACGAAGATGA+AGG | 0.597081 | 6_2:+15526469 | Msa0910670:CDS |
ATGGGAGAAACCATTGATTG+GGG | 0.597325 | 6_2:+15526928 | Msa0910670:three_prime_UTR |
CATAGGGGTAGAAGGGTGTG+AGG | 0.598113 | 6_2:+15526702 | Msa0910670:three_prime_UTR |
GAATATTATGACGATGATGA+CGG | 0.600596 | 6_2:+15526442 | Msa0910670:CDS |
GGCGCCACCAGCAGCCAGGG+CGG | 0.602641 | 6_2:+15526369 | Msa0910670:CDS |
AGGGTGCAGCTGCTGCGTCG+AGG | 0.603837 | 6_2:+15526281 | Msa0910670:CDS |
GGAAGTAGTAGAAATGAAGA+GGG | 0.606377 | 6_2:+15523628 | Msa0910670:CDS |
TTCGGAGGAAACGACAACAA+TGG | 0.607000 | 6_2:+15525340 | Msa0910670:CDS |
GGAGGTTGTTGAGAAACAAG+AGG | 0.607799 | 6_2:+15525427 | Msa0910670:CDS |
CTTTGAGAGACTAATGAAGG+AGG | 0.607887 | 6_2:+15525409 | Msa0910670:CDS |
GAAGCTGTAGTTGTAGGGGT+GGG | 0.608375 | 6_2:-15525065 | None:intergenic |
GCCTGTATAGAGCATCAAGT+TGG | 0.608740 | 6_2:-15526243 | None:intergenic |
GAAGAGGAAGAGGAAATGGA+AGG | 0.609651 | 6_2:+15525382 | Msa0910670:CDS |
TTAGCGAATGAAGATGGTGG+GGG | 0.612373 | 6_2:-15525272 | None:intergenic |
CAAGTATTTCAAGAAAGTGA+AGG | 0.613019 | 6_2:+15526171 | Msa0910670:CDS |
GTTGATGGAACAGTGGTGGT+AGG | 0.616670 | 6_2:-15525125 | None:intergenic |
GTATTGGTGGAAAATGTGTA+GGG | 0.617041 | 6_2:-15525184 | None:intergenic |
AAGGTGATTGATGCATTGAA+GGG | 0.619014 | 6_2:-15524989 | None:intergenic |
TCAACAGTGTTGGGAACAGG+AGG | 0.620361 | 6_2:+15523526 | Msa0910670:CDS |
GATGGAACAGTGGTGGTAGG+AGG | 0.624878 | 6_2:-15525122 | None:intergenic |
TCTATACAGGCAGAAGAACA+AGG | 0.628687 | 6_2:+15526255 | Msa0910670:CDS |
ATATTAGCGAATGAAGATGG+TGG | 0.629833 | 6_2:-15525275 | None:intergenic |
TGGGAGAAACCATTGATTGG+GGG | 0.629834 | 6_2:+15526929 | Msa0910670:three_prime_UTR |
ACCTAAAGGGCCATTATGGG+AGG | 0.631216 | 6_2:+15526072 | Msa0910670:CDS |
TGTGGCAACGGCGAAGCCTG+AGG | 0.633518 | 6_2:-15525866 | None:intergenic |
TTCAGGTGATGATGAAAGAG+GGG | 0.634874 | 6_2:+15523603 | Msa0910670:CDS |
AGCCAGGGCGGATGTGACCA+TGG | 0.636181 | 6_2:+15526381 | Msa0910670:CDS |
TCATTGAATGAGGCTCTAGG+TGG | 0.636284 | 6_2:+15526569 | Msa0910670:three_prime_UTR |
GGTGTAGAGTTTAACAATGG+AGG | 0.640467 | 6_2:-15525101 | None:intergenic |
CTCCTATGCAGCTATGCTAG+GGG | 0.640615 | 6_2:+15523501 | Msa0910670:exon |
AGGAAACGACAACAATGGAA+GGG | 0.641866 | 6_2:+15525345 | Msa0910670:CDS |
CCGGCAACATTGGTGGTAGG+TGG | 0.643227 | 6_2:+15526649 | Msa0910670:three_prime_UTR |
AGGCAGAAGAACAAGGTGGA+GGG | 0.643787 | 6_2:+15526262 | Msa0910670:CDS |
GTTGGAGTTTGAACTTGTTG+CGG | 0.644658 | 6_2:-15525809 | None:intergenic |
GGAGCTTACCATGATGGTGG+TGG | 0.649488 | 6_2:+15523571 | Msa0910670:CDS |
GTGTTGTTGTTCAATACAGG+AGG | 0.651178 | 6_2:-15525650 | None:intergenic |
AGTGCAACAACAAACAGCAC+CGG | 0.652497 | 6_2:+15525838 | Msa0910670:CDS |
ACACCGGCAACATTGGTGGT+AGG | 0.652854 | 6_2:+15526646 | Msa0910670:three_prime_UTR |
GGGGTTGGTGTAGTTTCCTG+CGG | 0.653086 | 6_2:-15525698 | None:intergenic |
GGTGGCGCCTGTTGTTGTGG+AGG | 0.655534 | 6_2:-15526355 | None:intergenic |
TCAGGTGATGATGAAAGAGG+GGG | 0.658562 | 6_2:+15523604 | Msa0910670:CDS |
GAAACGACAACAATGGAAGG+GGG | 0.686144 | 6_2:+15525347 | Msa0910670:CDS |
TGCATGCAAGTTCATCTAGG+TGG | 0.686396 | 6_2:+15525981 | Msa0910670:CDS |
GCAGGAGCTTACCATGATGG+TGG | 0.707615 | 6_2:+15523568 | Msa0910670:CDS |
GTTGCGAAAAGTGACAACAA+TGG | 0.712598 | 6_2:+15525947 | Msa0910670:CDS |
AAGTGTAGTTGATGGAACAG+TGG | 0.713309 | 6_2:-15525132 | None:intergenic |
AGGTAGTGACAATTATGAAG+TGG | 0.722373 | 6_2:+15526489 | Msa0910670:CDS |
GGTACAATAGGAATGCAAAG+AGG | 0.724275 | 6_2:+15526122 | Msa0910670:CDS |
TGTAGTTGATGGAACAGTGG+TGG | 0.725823 | 6_2:-15525129 | None:intergenic |
CAGGGCGGATGTGACCATGG+AGG | 0.727693 | 6_2:+15526384 | Msa0910670:CDS |
ATACAGGCAGAAGAACAAGG+TGG | 0.746845 | 6_2:+15526258 | Msa0910670:CDS |
TATTCTTCCTCATCTCGACG+CGG | 0.761362 | 6_2:-15526424 | None:intergenic |
TGATGACGGTGATGATGACG+AGG | 0.768255 | 6_2:+15526456 | Msa0910670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATTAAAAATATACATGA+GGG | - | chr6_2:15524174-15524193 | None:intergenic | 10.0% |
!! | TTAAATTAAAAATATACATG+AGG | - | chr6_2:15524175-15524194 | None:intergenic | 10.0% |
!! | AAAGAAAAAAATAAAATTTC+AGG | - | chr6_2:15524770-15524789 | None:intergenic | 10.0% |
!!! | ATTAATTTTGTCTTTATTTT+TGG | + | chr6_2:15524791-15524810 | Msa0910670:intron | 10.0% |
!!! | TTAATTTTGTCTTTATTTTT+GGG | + | chr6_2:15524792-15524811 | Msa0910670:intron | 10.0% |
!!! | AAATTTTTGAATATATACAT+AGG | + | chr6_2:15526685-15526704 | Msa0910670:three_prime_UTR | 10.0% |
!!! | AATTTTTGAATATATACATA+GGG | + | chr6_2:15526686-15526705 | Msa0910670:three_prime_UTR | 10.0% |
!! | AAAAAATAATTAATAGTTTC+CGG | - | chr6_2:15526782-15526801 | None:intergenic | 10.0% |
!!! | TTACATTTAACTTTATTTTT+TGG | + | chr6_2:15526969-15526988 | Msa0910670:three_prime_UTR | 10.0% |
!! | CAAATCAAAGATAAAAAAAT+AGG | - | chr6_2:15524083-15524102 | None:intergenic | 15.0% |
!!! | CTATTTTTTTATCTTTGATT+TGG | + | chr6_2:15524081-15524100 | Msa0910670:intron | 15.0% |
!!! | TATTTTTCAACACTAAAAAT+GGG | - | chr6_2:15524407-15524426 | None:intergenic | 15.0% |
!!! | TTATTTTTCAACACTAAAAA+TGG | - | chr6_2:15524408-15524427 | None:intergenic | 15.0% |
!! | GTTGAAAAATAAAAATATGA+TGG | + | chr6_2:15524416-15524435 | Msa0910670:intron | 15.0% |
!! | CATAAGATAATAAATGAATT+GGG | - | chr6_2:15524698-15524717 | None:intergenic | 15.0% |
!!! | AAATTTTTCTTTGCATTTTT+TGG | - | chr6_2:15524865-15524884 | None:intergenic | 15.0% |
!!! | ATTTTTGAATATATACATAG+GGG | + | chr6_2:15526687-15526706 | Msa0910670:three_prime_UTR | 15.0% |
!! | AAAGAAATAACATATAATCT+TGG | - | chr6_2:15526752-15526771 | None:intergenic | 15.0% |
!! | CTAAATAAATAAGTTCATAA+GGG | + | chr6_2:15526805-15526824 | Msa0910670:three_prime_UTR | 15.0% |
!! | TAAGATAAAGAAAATAATAG+AGG | + | chr6_2:15526839-15526858 | Msa0910670:three_prime_UTR | 15.0% |
!!! | TTTTTTTTTCAGATTTCTGA+AGG | - | chr6_2:15523872-15523891 | None:intergenic | 20.0% |
!! | TAAATTAATAAATGGGATTG+AGG | - | chr6_2:15523959-15523978 | None:intergenic | 20.0% |
!!! | TTCAAGTTTGTAACTTTATT+TGG | - | chr6_2:15524337-15524356 | None:intergenic | 20.0% |
!!! | ATTAAAAAGTTTGTTTCTCA+TGG | - | chr6_2:15524484-15524503 | None:intergenic | 20.0% |
!!! | TATATCAAAGTTGATGTAAT+TGG | - | chr6_2:15524564-15524583 | None:intergenic | 20.0% |
!! | AACTTAAGTGATTAAGATAA+GGG | - | chr6_2:15524609-15524628 | None:intergenic | 20.0% |
!! | TAACTTAAGTGATTAAGATA+AGG | - | chr6_2:15524610-15524629 | None:intergenic | 20.0% |
!! | GCATAAGATAATAAATGAAT+TGG | - | chr6_2:15524699-15524718 | None:intergenic | 20.0% |
!! | TCTTATCTCATTAAATCTTT+AGG | - | chr6_2:15524742-15524761 | None:intergenic | 20.0% |
!!! | TGTTATTTCTTTTTCAAAAC+CGG | + | chr6_2:15526760-15526779 | Msa0910670:three_prime_UTR | 20.0% |
!! | GCTAAATAAATAAGTTCATA+AGG | + | chr6_2:15526804-15526823 | Msa0910670:three_prime_UTR | 20.0% |
!!! | ATGTTTAAGATGTTGTAAAT+GGG | + | chr6_2:15526910-15526929 | Msa0910670:three_prime_UTR | 20.0% |
! | TTTAAAGATGCAAGTGTTAA+AGG | + | chr6_2:15523736-15523755 | Msa0910670:CDS | 25.0% |
! | TCAATAATTCAGATTTCTCA+AGG | - | chr6_2:15524023-15524042 | None:intergenic | 25.0% |
! | AAAATGGGTAACTGAAATAA+GGG | - | chr6_2:15524392-15524411 | None:intergenic | 25.0% |
! | AAAAATGGGTAACTGAAATA+AGG | - | chr6_2:15524393-15524412 | None:intergenic | 25.0% |
! | TAGGATAAGAAGCAATTAAT+TGG | - | chr6_2:15524723-15524742 | None:intergenic | 25.0% |
! | TAATAGTAATTTGAGGAAGA+GGG | - | chr6_2:15525250-15525269 | None:intergenic | 25.0% |
! | TTGTAATCAATCATTGAATG+AGG | + | chr6_2:15526559-15526578 | Msa0910670:three_prime_UTR | 25.0% |
! | ACAGTACATAACATTATTCA+AGG | - | chr6_2:15526871-15526890 | None:intergenic | 25.0% |
!! | CATGTTTAAGATGTTGTAAA+TGG | + | chr6_2:15526909-15526928 | Msa0910670:three_prime_UTR | 25.0% |
!!! | TTTTTTCAGATTTCTGAAGG+TGG | - | chr6_2:15523869-15523888 | None:intergenic | 30.0% |
ATAATTCAGATTTCTCAAGG+TGG | - | chr6_2:15524020-15524039 | None:intergenic | 30.0% | |
!! | GGAAGAAAATCTTTGCTTTT+TGG | - | chr6_2:15524368-15524387 | None:intergenic | 30.0% |
CAAAATCTTTGTTCACACTT+TGG | + | chr6_2:15524446-15524465 | Msa0910670:intron | 30.0% | |
AGACAACCAAAGAATTGAAA+TGG | - | chr6_2:15524639-15524658 | None:intergenic | 30.0% | |
!!! | GTCTTTATTTTTGGGTACTT+TGG | + | chr6_2:15524800-15524819 | Msa0910670:intron | 30.0% |
TACTTTGGCTAATAGGAAAA+TGG | + | chr6_2:15524815-15524834 | Msa0910670:intron | 30.0% | |
!! | TTTGTTGTTGTTGTTGATGA+TGG | - | chr6_2:15525209-15525228 | None:intergenic | 30.0% |
GAGGGTTATTAGTATTTGTA+GGG | - | chr6_2:15525232-15525251 | None:intergenic | 30.0% | |
AGAGGGTTATTAGTATTTGT+AGG | - | chr6_2:15525233-15525252 | None:intergenic | 30.0% | |
GTAATAGTAATTTGAGGAAG+AGG | - | chr6_2:15525251-15525270 | None:intergenic | 30.0% | |
GAAATATTAGCGAATGAAGA+TGG | - | chr6_2:15525281-15525300 | None:intergenic | 30.0% | |
TTCATTCGCTAATATTTCAG+CGG | + | chr6_2:15525283-15525302 | Msa0910670:CDS | 30.0% | |
! | TTTCTTTGAGAGACTAATGA+AGG | + | chr6_2:15525406-15525425 | Msa0910670:CDS | 30.0% |
TGCAAAGGATTAATAGAGAA+AGG | + | chr6_2:15525534-15525553 | Msa0910670:CDS | 30.0% | |
GCAAAGGATTAATAGAGAAA+GGG | + | chr6_2:15525535-15525554 | Msa0910670:CDS | 30.0% | |
! | GATATGAAGTACCAAGAAAA+TGG | + | chr6_2:15526049-15526068 | Msa0910670:CDS | 30.0% |
! | TTCAGGTTTGATGAAGAAAA+TGG | + | chr6_2:15526099-15526118 | Msa0910670:CDS | 30.0% |
TCAGGTTTGATGAAGAAAAT+GGG | + | chr6_2:15526100-15526119 | Msa0910670:CDS | 30.0% | |
CAAGTATTTCAAGAAAGTGA+AGG | + | chr6_2:15526171-15526190 | Msa0910670:CDS | 30.0% | |
GAATATTATGACGATGATGA+CGG | + | chr6_2:15526442-15526461 | Msa0910670:CDS | 30.0% | |
! | TATTTGCTCCTCTTTTATTG+AGG | - | chr6_2:15526535-15526554 | None:intergenic | 30.0% |
AATATATACATAGGGGTAGA+AGG | + | chr6_2:15526694-15526713 | Msa0910670:three_prime_UTR | 30.0% | |
ATATATACATAGGGGTAGAA+GGG | + | chr6_2:15526695-15526714 | Msa0910670:three_prime_UTR | 30.0% | |
AAATAAGTTCATAAGGGAGA+TGG | + | chr6_2:15526811-15526830 | Msa0910670:three_prime_UTR | 30.0% | |
AATAAGTTCATAAGGGAGAT+GGG | + | chr6_2:15526812-15526831 | Msa0910670:three_prime_UTR | 30.0% | |
!!! | GTTCTGTGCTGTTTTTTGTA+AGG | + | chr6_2:15523400-15523419 | Msa0910670:five_prime_UTR | 35.0% |
! | ATTTCAGGTGATGATGAAAG+AGG | + | chr6_2:15523601-15523620 | Msa0910670:CDS | 35.0% |
! | TTTCAGGTGATGATGAAAGA+GGG | + | chr6_2:15523602-15523621 | Msa0910670:CDS | 35.0% |
TGGAAGTAGTAGAAATGAAG+AGG | + | chr6_2:15523627-15523646 | Msa0910670:CDS | 35.0% | |
GGAAGTAGTAGAAATGAAGA+GGG | + | chr6_2:15523628-15523647 | Msa0910670:CDS | 35.0% | |
!! | GAAGTTTTGGTGGTAATAGA+TGG | + | chr6_2:15523659-15523678 | Msa0910670:CDS | 35.0% |
! | AAAGCAACTGTTTCTTGTCT+TGG | - | chr6_2:15523685-15523704 | None:intergenic | 35.0% |
! | CAGTTGCTTTGTTGAAGATA+AGG | + | chr6_2:15523695-15523714 | Msa0910670:CDS | 35.0% |
GTTGAAGATAAGGTCTGATA+TGG | + | chr6_2:15523705-15523724 | Msa0910670:CDS | 35.0% | |
AAGTGTTAAAGGTCCCTTAT+GGG | + | chr6_2:15523747-15523766 | Msa0910670:CDS | 35.0% | |
CTTGAAACTTCATCCCATAA+GGG | - | chr6_2:15523763-15523782 | None:intergenic | 35.0% | |
AAGTGATTAAGATAAGGGAG+AGG | - | chr6_2:15524604-15524623 | None:intergenic | 35.0% | |
CTTGCTCCATTTCAATTCTT+TGG | + | chr6_2:15524630-15524649 | Msa0910670:intron | 35.0% | |
!! | TTTTGGGTACTTTGGCTAAT+AGG | + | chr6_2:15524808-15524827 | Msa0910670:intron | 35.0% |
AATAGGAAAATGGCAGATCT+TGG | + | chr6_2:15524825-15524844 | Msa0910670:intron | 35.0% | |
ATAGGAAAATGGCAGATCTT+GGG | + | chr6_2:15524826-15524845 | Msa0910670:intron | 35.0% | |
TATCACAAGAGAACCAAAGA+AGG | + | chr6_2:15524900-15524919 | Msa0910670:CDS | 35.0% | |
!! | CATTGAAGGGTTGTTTTCAA+GGG | - | chr6_2:15524979-15524998 | None:intergenic | 35.0% |
AAGGTGATTGATGCATTGAA+GGG | - | chr6_2:15524992-15525011 | None:intergenic | 35.0% | |
GTTTGTGTTTGTGTTTGAGT+TGG | - | chr6_2:15525029-15525048 | None:intergenic | 35.0% | |
AAATGAAGCTGTAGTTGTAG+GGG | - | chr6_2:15525072-15525091 | None:intergenic | 35.0% | |
GAAATGAAGCTGTAGTTGTA+GGG | - | chr6_2:15525073-15525092 | None:intergenic | 35.0% | |
AGAAATGAAGCTGTAGTTGT+AGG | - | chr6_2:15525074-15525093 | None:intergenic | 35.0% | |
TGTGTGTAAGACATTGGAAT+TGG | - | chr6_2:15525158-15525177 | None:intergenic | 35.0% | |
TTGGATTGTGTGTAAGACAT+TGG | - | chr6_2:15525164-15525183 | None:intergenic | 35.0% | |
! | GTATTGGTGGAAAATGTGTA+GGG | - | chr6_2:15525187-15525206 | None:intergenic | 35.0% |
!! | GTTGTTGTTGATGATGGTAT+TGG | - | chr6_2:15525203-15525222 | None:intergenic | 35.0% |
TATTAGCGAATGAAGATGGT+GGG | - | chr6_2:15525277-15525296 | None:intergenic | 35.0% | |
ATATTAGCGAATGAAGATGG+TGG | - | chr6_2:15525278-15525297 | None:intergenic | 35.0% | |
TACTAAAGATGCTGCTGTTA+TGG | + | chr6_2:15525589-15525608 | Msa0910670:CDS | 35.0% | |
! | TTGTTGTTGTTGAGGAATGA+CGG | - | chr6_2:15525675-15525694 | None:intergenic | 35.0% |
TACCAAGAAAATGGACCTAA+AGG | + | chr6_2:15526058-15526077 | Msa0910670:CDS | 35.0% | |
ACCAAGAAAATGGACCTAAA+GGG | + | chr6_2:15526059-15526078 | Msa0910670:CDS | 35.0% | |
CAGGTTTGATGAAGAAAATG+GGG | + | chr6_2:15526101-15526120 | Msa0910670:CDS | 35.0% | |
TGAAGAAAATGGGGTACAAT+AGG | + | chr6_2:15526110-15526129 | Msa0910670:CDS | 35.0% | |
! | AAAGAGGTGCAAAGAGAAAT+GGG | + | chr6_2:15526138-15526157 | Msa0910670:CDS | 35.0% |
AGGTAGTGACAATTATGAAG+TGG | + | chr6_2:15526489-15526508 | Msa0910670:CDS | 35.0% | |
TTGTAAAAAGTGGCAGTAAG+CGG | + | chr6_2:15526615-15526634 | Msa0910670:three_prime_UTR | 35.0% | |
AAATGGGAGAAACCATTGAT+TGG | + | chr6_2:15526926-15526945 | Msa0910670:three_prime_UTR | 35.0% | |
! | AATGGGAGAAACCATTGATT+GGG | + | chr6_2:15526927-15526946 | Msa0910670:three_prime_UTR | 35.0% |
TAAATAAACCCCCCAATCAA+TGG | - | chr6_2:15526941-15526960 | None:intergenic | 35.0% | |
! | TTCAGGTGATGATGAAAGAG+GGG | + | chr6_2:15523603-15523622 | Msa0910670:CDS | 40.0% |
TAGTAGAAATGAAGAGGGTG+TGG | + | chr6_2:15523633-15523652 | Msa0910670:CDS | 40.0% | |
CAAGTGTTAAAGGTCCCTTA+TGG | + | chr6_2:15523746-15523765 | Msa0910670:CDS | 40.0% | |
CCTTGAAACTTCATCCCATA+AGG | - | chr6_2:15523764-15523783 | None:intergenic | 40.0% | |
CCTTATGGGATGAAGTTTCA+AGG | + | chr6_2:15523761-15523780 | Msa0910670:CDS | 40.0% | |
ATGGGTAACTGAAATAAGGG+AGG | - | chr6_2:15524389-15524408 | None:intergenic | 40.0% | |
AAGAGAACCAAAGAAGGAAG+AGG | + | chr6_2:15524906-15524925 | Msa0910670:CDS | 40.0% | |
TTTACCACCTCTTCCTTCTT+TGG | - | chr6_2:15524916-15524935 | None:intergenic | 40.0% | |
!! | GCATTGAAGGGTTGTTTTCA+AGG | - | chr6_2:15524980-15524999 | None:intergenic | 40.0% |
GAAGGTGATTGATGCATTGA+AGG | - | chr6_2:15524993-15525012 | None:intergenic | 40.0% | |
!! | TGTGTTTGTGTTTGAGTTGG+TGG | - | chr6_2:15525026-15525045 | None:intergenic | 40.0% |
GGTGTAGAGTTTAACAATGG+AGG | - | chr6_2:15525104-15525123 | None:intergenic | 40.0% | |
! | GGAGGTGTAGAGTTTAACAA+TGG | - | chr6_2:15525107-15525126 | None:intergenic | 40.0% |
!! | AAGTGTAGTTGATGGAACAG+TGG | - | chr6_2:15525135-15525154 | None:intergenic | 40.0% |
! | GGAATTGGAAGTGTAGTTGA+TGG | - | chr6_2:15525143-15525162 | None:intergenic | 40.0% |
!! | GGTATTGGTGGAAAATGTGT+AGG | - | chr6_2:15525188-15525207 | None:intergenic | 40.0% |
!! | GTTGTTGATGATGGTATTGG+TGG | - | chr6_2:15525200-15525219 | None:intergenic | 40.0% |
! | GGGGGTGTAATAGTAATTTG+AGG | - | chr6_2:15525257-15525276 | None:intergenic | 40.0% |
ATTAGCGAATGAAGATGGTG+GGG | - | chr6_2:15525276-15525295 | None:intergenic | 40.0% | |
AAGTTCGTCTTCGACTTCTT+CGG | + | chr6_2:15525322-15525341 | Msa0910670:CDS | 40.0% | |
AGGAAACGACAACAATGGAA+GGG | + | chr6_2:15525345-15525364 | Msa0910670:CDS | 40.0% | |
! | CTTTGAGAGACTAATGAAGG+AGG | + | chr6_2:15525409-15525428 | Msa0910670:CDS | 40.0% |
GAGAAAAGAGAAAGAGAGAG+AGG | + | chr6_2:15525479-15525498 | Msa0910670:CDS | 40.0% | |
! | GTGTTGTTGTTCAATACAGG+AGG | - | chr6_2:15525653-15525672 | None:intergenic | 40.0% |
!! | ACGGTGTTGTTGTTCAATAC+AGG | - | chr6_2:15525656-15525675 | None:intergenic | 40.0% |
!! | GGTATTGCTGGTATTGGTAT+TGG | - | chr6_2:15525785-15525804 | None:intergenic | 40.0% |
!! | GTTGGAGTTTGAACTTGTTG+CGG | - | chr6_2:15525812-15525831 | None:intergenic | 40.0% |
TGTTGTTGCACTGTTACAGT+TGG | - | chr6_2:15525830-15525849 | None:intergenic | 40.0% | |
GTTGCGAAAAGTGACAACAA+TGG | + | chr6_2:15525947-15525966 | Msa0910670:CDS | 40.0% | |
TGATGCATGCAAGTTCATCT+AGG | + | chr6_2:15525978-15525997 | Msa0910670:CDS | 40.0% | |
! | AATGCCTCAACCTCAGTTTT+TGG | - | chr6_2:15526007-15526026 | None:intergenic | 40.0% |
GGTACAATAGGAATGCAAAG+AGG | + | chr6_2:15526122-15526141 | Msa0910670:CDS | 40.0% | |
! | CAAAGAGGTGCAAAGAGAAA+TGG | + | chr6_2:15526137-15526156 | Msa0910670:CDS | 40.0% |
TGAAGGAAAGCAACAAGAAG+AGG | + | chr6_2:15526188-15526207 | Msa0910670:CDS | 40.0% | |
GGACATGTCTTTGAATCTTC+TGG | - | chr6_2:15526214-15526233 | None:intergenic | 40.0% | |
!! | GCATCAAGTTGGTGAAAGTA+AGG | - | chr6_2:15526235-15526254 | None:intergenic | 40.0% |
ACCAACTTGATGCTCTATAC+AGG | + | chr6_2:15526242-15526261 | Msa0910670:CDS | 40.0% | |
TCTATACAGGCAGAAGAACA+AGG | + | chr6_2:15526255-15526274 | Msa0910670:CDS | 40.0% | |
! | TTGCTCCTCTTTTATTGAGG+TGG | - | chr6_2:15526532-15526551 | None:intergenic | 40.0% |
CAATCATTGAATGAGGCTCT+AGG | + | chr6_2:15526566-15526585 | Msa0910670:three_prime_UTR | 40.0% | |
! | GCATGGACTGTTGTAAAAAG+TGG | + | chr6_2:15526605-15526624 | Msa0910670:three_prime_UTR | 40.0% |
! | ATGGGAGAAACCATTGATTG+GGG | + | chr6_2:15526928-15526947 | Msa0910670:three_prime_UTR | 40.0% |
ACTCCTATGCAGCTATGCTA+GGG | + | chr6_2:15523500-15523519 | Msa0910670:exon | 45.0% | |
! | TCAGGTGATGATGAAAGAGG+GGG | + | chr6_2:15523604-15523623 | Msa0910670:CDS | 45.0% |
!! | GAGGGTGTGGATAGAAGTTT+TGG | + | chr6_2:15523646-15523665 | Msa0910670:CDS | 45.0% |
!! | GGTGTGGATAGAAGTTTTGG+TGG | + | chr6_2:15523649-15523668 | Msa0910670:CDS | 45.0% |
! | CAGATTTCTGAAGGTGGCAT+TGG | - | chr6_2:15523863-15523882 | None:intergenic | 45.0% |
AGAACCAAAGAAGGAAGAGG+TGG | + | chr6_2:15524909-15524928 | Msa0910670:CDS | 45.0% | |
GGAAGAGGTGGTAAATCAGA+TGG | + | chr6_2:15524921-15524940 | Msa0910670:CDS | 45.0% | |
!! | GTTGGTGGTGGTGTTATTGA+AGG | - | chr6_2:15525011-15525030 | None:intergenic | 45.0% |
!! | GTTTGTGTTTGAGTTGGTGG+TGG | - | chr6_2:15525023-15525042 | None:intergenic | 45.0% |
GGGGTGGGAATAGTACTAAT+GGG | - | chr6_2:15525053-15525072 | None:intergenic | 45.0% | |
AGGGGTGGGAATAGTACTAA+TGG | - | chr6_2:15525054-15525073 | None:intergenic | 45.0% | |
!! | TGTAGTTGATGGAACAGTGG+TGG | - | chr6_2:15525132-15525151 | None:intergenic | 45.0% |
TGGTGGAAAATGTGTAGGGT+TGG | - | chr6_2:15525183-15525202 | None:intergenic | 45.0% | |
! | TTAGCGAATGAAGATGGTGG+GGG | - | chr6_2:15525275-15525294 | None:intergenic | 45.0% |
TTCGGAGGAAACGACAACAA+TGG | + | chr6_2:15525340-15525359 | Msa0910670:CDS | 45.0% | |
GAGGAAACGACAACAATGGA+AGG | + | chr6_2:15525344-15525363 | Msa0910670:CDS | 45.0% | |
GGAAACGACAACAATGGAAG+GGG | + | chr6_2:15525346-15525365 | Msa0910670:CDS | 45.0% | |
GAAACGACAACAATGGAAGG+GGG | + | chr6_2:15525347-15525366 | Msa0910670:CDS | 45.0% | |
GAAGAGGAAGAGGAAATGGA+AGG | + | chr6_2:15525382-15525401 | Msa0910670:CDS | 45.0% | |
GGAGGTTGTTGAGAAACAAG+AGG | + | chr6_2:15525427-15525446 | Msa0910670:CDS | 45.0% | |
AACAAGAGGAGTTGCACAAG+AGG | + | chr6_2:15525441-15525460 | Msa0910670:CDS | 45.0% | |
!! | GCTGGTATTGGTATTGGCAA+TGG | - | chr6_2:15525779-15525798 | None:intergenic | 45.0% |
! | GGTGTAGGTATTGCTGGTAT+TGG | - | chr6_2:15525791-15525810 | None:intergenic | 45.0% |
!! | GTTTGAACTTGTTGCGGTGT+AGG | - | chr6_2:15525806-15525825 | None:intergenic | 45.0% |
AGTGCAACAACAAACAGCAC+CGG | + | chr6_2:15525838-15525857 | Msa0910670:CDS | 45.0% | |
ACAGCAGCAAGTGACGAATA+TGG | + | chr6_2:15525922-15525941 | Msa0910670:CDS | 45.0% | |
TGCATGCAAGTTCATCTAGG+TGG | + | chr6_2:15525981-15526000 | Msa0910670:CDS | 45.0% | |
ATCTAGGTGGCCAAAAACTG+AGG | + | chr6_2:15525994-15526013 | Msa0910670:CDS | 45.0% | |
! | GCCCTTTAGGTCCATTTTCT+TGG | - | chr6_2:15526063-15526082 | None:intergenic | 45.0% |
ATGGACCTAAAGGGCCATTA+TGG | + | chr6_2:15526068-15526087 | Msa0910670:CDS | 45.0% | |
TGGACCTAAAGGGCCATTAT+GGG | + | chr6_2:15526069-15526088 | Msa0910670:CDS | 45.0% | |
CCTGAAATCTCCTCCCATAA+TGG | - | chr6_2:15526085-15526104 | None:intergenic | 45.0% | |
CCATTATGGGAGGAGATTTC+AGG | + | chr6_2:15526082-15526101 | Msa0910670:CDS | 45.0% | |
! | GCCTGTATAGAGCATCAAGT+TGG | - | chr6_2:15526246-15526265 | None:intergenic | 45.0% |
ATACAGGCAGAAGAACAAGG+TGG | + | chr6_2:15526258-15526277 | Msa0910670:CDS | 45.0% | |
ATCATTCTCAGCATCCTCCA+TGG | - | chr6_2:15526401-15526420 | None:intergenic | 45.0% | |
TGGAGGATGCTGAGAATGAT+CGG | + | chr6_2:15526401-15526420 | Msa0910670:CDS | 45.0% | |
TATTCTTCCTCATCTCGACG+CGG | - | chr6_2:15526427-15526446 | None:intergenic | 45.0% | |
!! | CTCTTTTATTGAGGTGGTGG+TGG | - | chr6_2:15526526-15526545 | None:intergenic | 45.0% |
CACCACCACCTCAATAAAAG+AGG | + | chr6_2:15526524-15526543 | Msa0910670:exon | 45.0% | |
! | CTCCTCTTTTATTGAGGTGG+TGG | - | chr6_2:15526529-15526548 | None:intergenic | 45.0% |
!! | TCATTGAATGAGGCTCTAGG+TGG | + | chr6_2:15526569-15526588 | Msa0910670:three_prime_UTR | 45.0% |
!! | CATTGAATGAGGCTCTAGGT+GGG | + | chr6_2:15526570-15526589 | Msa0910670:three_prime_UTR | 45.0% |
!! | ATTGAATGAGGCTCTAGGTG+GGG | + | chr6_2:15526571-15526590 | Msa0910670:three_prime_UTR | 45.0% |
! | CAACAGTCCATGCACTCTTT+TGG | - | chr6_2:15526598-15526617 | None:intergenic | 45.0% |
TAAAAAGTGGCAGTAAGCGG+CGG | + | chr6_2:15526618-15526637 | Msa0910670:three_prime_UTR | 45.0% | |
! | TGGGAGAAACCATTGATTGG+GGG | + | chr6_2:15526929-15526948 | Msa0910670:three_prime_UTR | 45.0% |
!! | GAAAAATTAAATTAATAAAT+GGG | - | chr6_2:15523966-15523985 | None:intergenic | 5.0% |
!! | TGAAAAATTAAATTAATAAA+TGG | - | chr6_2:15523967-15523986 | None:intergenic | 5.0% |
CACTCCTATGCAGCTATGCT+AGG | + | chr6_2:15523499-15523518 | Msa0910670:exon | 50.0% | |
CTCCTATGCAGCTATGCTAG+GGG | + | chr6_2:15523501-15523520 | Msa0910670:exon | 50.0% | |
CTAGGGGACTCAACAGTGTT+GGG | + | chr6_2:15523517-15523536 | Msa0910670:CDS | 50.0% | |
! | GACTCAACAGTGTTGGGAAC+AGG | + | chr6_2:15523523-15523542 | Msa0910670:CDS | 50.0% |
! | TCAACAGTGTTGGGAACAGG+AGG | + | chr6_2:15523526-15523545 | Msa0910670:CDS | 50.0% |
TTGATCCACCACCACCATCA+TGG | - | chr6_2:15523582-15523601 | None:intergenic | 50.0% | |
!! | GGTGGTGGTGGATCAATTTC+AGG | + | chr6_2:15523586-15523605 | Msa0910670:CDS | 50.0% |
GAAGCTGTAGTTGTAGGGGT+GGG | - | chr6_2:15525068-15525087 | None:intergenic | 50.0% | |
TGAAGCTGTAGTTGTAGGGG+TGG | - | chr6_2:15525069-15525088 | None:intergenic | 50.0% | |
! | GTTGATGGAACAGTGGTGGT+AGG | - | chr6_2:15525128-15525147 | None:intergenic | 50.0% |
TTCGTCTTCGACTTCTTCGG+AGG | + | chr6_2:15525325-15525344 | Msa0910670:CDS | 50.0% | |
GACGGAAGAGGAAGAGGAAA+TGG | + | chr6_2:15525378-15525397 | Msa0910670:CDS | 50.0% | |
GGAGTTGCACAAGAGGTTCT+TGG | + | chr6_2:15525448-15525467 | Msa0910670:CDS | 50.0% | |
! | GAGGTGCTAGAGAAGAAGCT+TGG | + | chr6_2:15525498-15525517 | Msa0910670:CDS | 50.0% |
GTGCTAGAGAAGAAGCTTGG+AGG | + | chr6_2:15525501-15525520 | Msa0910670:CDS | 50.0% | |
GGAGGTTGCAAGAGATGCAA+AGG | + | chr6_2:15525519-15525538 | Msa0910670:CDS | 50.0% | |
!! | GGTATTGGCAATGGTACTGC+TGG | - | chr6_2:15525770-15525789 | None:intergenic | 50.0% |
! | TGTTGCGGTGTAGGTATTGC+TGG | - | chr6_2:15525797-15525816 | None:intergenic | 50.0% |
TGCTGCTGATGTTGTGGCAA+CGG | - | chr6_2:15525881-15525900 | None:intergenic | 50.0% | |
TGTTGCTGCTGCTGATGTTG+TGG | - | chr6_2:15525887-15525906 | None:intergenic | 50.0% | |
ACATCAGCAGCAGCAACAAC+AGG | + | chr6_2:15525889-15525908 | Msa0910670:CDS | 50.0% | |
GTGGCCAAAAACTGAGGTTG+AGG | + | chr6_2:15526000-15526019 | Msa0910670:CDS | 50.0% | |
ACCTAAAGGGCCATTATGGG+AGG | + | chr6_2:15526072-15526091 | Msa0910670:CDS | 50.0% | |
TCCTCCCATAATGGCCCTTT+AGG | - | chr6_2:15526076-15526095 | None:intergenic | 50.0% | |
AGGCAGAAGAACAAGGTGGA+GGG | + | chr6_2:15526262-15526281 | Msa0910670:CDS | 50.0% | |
! | AACGATGATGGCACCGTTGA+TGG | + | chr6_2:15526312-15526331 | Msa0910670:CDS | 50.0% |
!! | TGATGACGGTGATGATGACG+AGG | + | chr6_2:15526456-15526475 | Msa0910670:CDS | 50.0% |
GATGACGAGGACGAAGATGA+AGG | + | chr6_2:15526469-15526488 | Msa0910670:CDS | 50.0% | |
!! | TTGAGGTGGTGGTGGTTTGT+TGG | - | chr6_2:15526518-15526537 | None:intergenic | 50.0% |
!! | TTGAATGAGGCTCTAGGTGG+GGG | + | chr6_2:15526572-15526591 | Msa0910670:three_prime_UTR | 50.0% |
! | GGGAGAAACCATTGATTGGG+GGG | + | chr6_2:15526930-15526949 | Msa0910670:three_prime_UTR | 50.0% |
GTCCCCTAGCATAGCTGCAT+AGG | - | chr6_2:15523506-15523525 | None:intergenic | 55.0% | |
GCTAGGGGACTCAACAGTGT+TGG | + | chr6_2:15523516-15523535 | Msa0910670:CDS | 55.0% | |
! | ACAGTGTTGGGAACAGGAGG+AGG | + | chr6_2:15523529-15523548 | Msa0910670:CDS | 55.0% |
GGAGCAGGAGCTTACCATGA+TGG | + | chr6_2:15523565-15523584 | Msa0910670:CDS | 55.0% | |
GCAGGAGCTTACCATGATGG+TGG | + | chr6_2:15523568-15523587 | Msa0910670:CDS | 55.0% | |
!! | GGAGCTTACCATGATGGTGG+TGG | + | chr6_2:15523571-15523590 | Msa0910670:CDS | 55.0% |
!! | GCTTACCATGATGGTGGTGG+TGG | + | chr6_2:15523574-15523593 | Msa0910670:CDS | 55.0% |
! | GGTGATGATGAAAGAGGGGG+TGG | + | chr6_2:15523607-15523626 | Msa0910670:CDS | 55.0% |
GATGGAACAGTGGTGGTAGG+AGG | - | chr6_2:15525125-15525144 | None:intergenic | 55.0% | |
TGGAAGGGGGATCGAATCGA+CGG | + | chr6_2:15525360-15525379 | Msa0910670:CDS | 55.0% | |
CGAATCGACGGAAGAGGAAG+AGG | + | chr6_2:15525372-15525391 | Msa0910670:CDS | 55.0% | |
!! | TGCGGCGCTTGTTGTTGTTG+AGG | - | chr6_2:15525683-15525702 | None:intergenic | 55.0% |
! | TCAACAACAACAAGCGCCGC+AGG | + | chr6_2:15525682-15525701 | Msa0910670:CDS | 55.0% |
!! | GGGGTTGGTGTAGTTTCCTG+CGG | - | chr6_2:15525701-15525720 | None:intergenic | 55.0% |
!! | TCGGTGTCGGTGTTGGTGTT+GGG | - | chr6_2:15525721-15525740 | None:intergenic | 55.0% |
!! | AATGGTGCTGCTGCTGGTGT+CGG | - | chr6_2:15525740-15525759 | None:intergenic | 55.0% |
!! | GGTACTGCTGGTACTGGCAA+TGG | - | chr6_2:15525758-15525777 | None:intergenic | 55.0% |
GGCAATGGTACTGCTGGTAC+TGG | - | chr6_2:15525764-15525783 | None:intergenic | 55.0% | |
!! | AACAGCACCGGTCATTCCTC+AGG | + | chr6_2:15525850-15525869 | Msa0910670:CDS | 55.0% |
GCAGCAGCAACAACAGGTTC+AGG | + | chr6_2:15525895-15525914 | Msa0910670:CDS | 55.0% | |
CAGGCAGAAGAACAAGGTGG+AGG | + | chr6_2:15526261-15526280 | Msa0910670:CDS | 55.0% | |
TGCTCCGGCTGAACCATCAA+CGG | - | chr6_2:15526328-15526347 | None:intergenic | 55.0% | |
GCAATGGCCTCCACAACAAC+AGG | + | chr6_2:15526348-15526367 | Msa0910670:CDS | 55.0% | |
AACGACACCGGCAACATTGG+TGG | + | chr6_2:15526642-15526661 | Msa0910670:three_prime_UTR | 55.0% | |
! | ACACCGGCAACATTGGTGGT+AGG | + | chr6_2:15526646-15526665 | Msa0910670:three_prime_UTR | 55.0% |
CCACCTACCACCAATGTTGC+CGG | - | chr6_2:15526652-15526671 | None:intergenic | 55.0% | |
! | GCAACATTGGTGGTAGGTGG+TGG | + | chr6_2:15526652-15526671 | Msa0910670:three_prime_UTR | 55.0% |
! | ACATTGGTGGTAGGTGGTGG+TGG | + | chr6_2:15526655-15526674 | Msa0910670:three_prime_UTR | 55.0% |
! | CATAGGGGTAGAAGGGTGTG+AGG | + | chr6_2:15526702-15526721 | Msa0910670:three_prime_UTR | 55.0% |
GGGGATCGAATCGACGGAAG+AGG | + | chr6_2:15525366-15525385 | Msa0910670:CDS | 60.0% | |
!! | GTCGGTGTTGGTGTTGGGGT+TGG | - | chr6_2:15525716-15525735 | None:intergenic | 60.0% |
!! | CGGTGTCGGTGTTGGTGTTG+GGG | - | chr6_2:15525720-15525739 | None:intergenic | 60.0% |
!! | GTCGGTGTCGGTGTTGGTGT+TGG | - | chr6_2:15525722-15525741 | None:intergenic | 60.0% |
!! | ACTGGCAATGGTGCTGCTGC+TGG | - | chr6_2:15525746-15525765 | None:intergenic | 60.0% |
GGCGAAGCCTGAGGAATGAC+CGG | - | chr6_2:15525860-15525879 | None:intergenic | 60.0% | |
GAGGCCTGAGGGAACGATGA+TGG | + | chr6_2:15526300-15526319 | Msa0910670:CDS | 60.0% | |
! | GGTGCCATCATCGTTCCCTC+AGG | - | chr6_2:15526307-15526326 | None:intergenic | 60.0% |
!! | GGCACCGTTGATGGTTCAGC+CGG | + | chr6_2:15526321-15526340 | Msa0910670:CDS | 60.0% |
TGGTTCAGCCGGAGCAGCAA+TGG | + | chr6_2:15526332-15526351 | Msa0910670:CDS | 60.0% | |
TGTGGAGGCCATTGCTGCTC+CGG | - | chr6_2:15526343-15526362 | None:intergenic | 60.0% | |
! | GTGGGGGCCAAAAGAGTGCA+TGG | + | chr6_2:15526588-15526607 | Msa0910670:three_prime_UTR | 60.0% |
GGCAACGACACCGGCAACAT+TGG | + | chr6_2:15526639-15526658 | Msa0910670:three_prime_UTR | 60.0% | |
! | CCGGCAACATTGGTGGTAGG+TGG | + | chr6_2:15526649-15526668 | Msa0910670:three_prime_UTR | 60.0% |
GGAACAGGAGGAGGCAGCTC+AGG | + | chr6_2:15523538-15523557 | Msa0910670:CDS | 65.0% | |
GGAGGAGGCAGCTCAGGAGA+TGG | + | chr6_2:15523544-15523563 | Msa0910670:CDS | 65.0% | |
GGCAGCTCAGGAGATGGAGC+AGG | + | chr6_2:15523550-15523569 | Msa0910670:CDS | 65.0% | |
!! | GCTGGTGTCGGTGTCGGTGT+TGG | - | chr6_2:15525728-15525747 | None:intergenic | 65.0% |
!! | GCTGCTGCTGGTGTCGGTGT+CGG | - | chr6_2:15525734-15525753 | None:intergenic | 65.0% |
TGTGGCAACGGCGAAGCCTG+AGG | - | chr6_2:15525869-15525888 | None:intergenic | 65.0% | |
GGTGGCGCCTGTTGTTGTGG+AGG | - | chr6_2:15526358-15526377 | None:intergenic | 65.0% | |
! | GCTGGTGGCGCCTGTTGTTG+TGG | - | chr6_2:15526361-15526380 | None:intergenic | 65.0% |
AGCCAGGGCGGATGTGACCA+TGG | + | chr6_2:15526381-15526400 | Msa0910670:CDS | 65.0% | |
CTCCATGGTCACATCCGCCC+TGG | - | chr6_2:15526386-15526405 | None:intergenic | 65.0% | |
CAGGGCGGATGTGACCATGG+AGG | + | chr6_2:15526384-15526403 | Msa0910670:CDS | 65.0% | |
TGATCGGCCGCGTCGAGATG+AGG | + | chr6_2:15526417-15526436 | Msa0910670:CDS | 65.0% | |
GTAAGCGGCGGCAACGACAC+CGG | + | chr6_2:15526630-15526649 | Msa0910670:three_prime_UTR | 65.0% | |
AGGGTGCAGCTGCTGCGTCG+AGG | + | chr6_2:15526281-15526300 | Msa0910670:CDS | 70.0% | |
AGCTGCTGCGTCGAGGCCTG+AGG | + | chr6_2:15526288-15526307 | Msa0910670:CDS | 70.0% | |
GCTGCTGCGTCGAGGCCTGA+GGG | + | chr6_2:15526289-15526308 | Msa0910670:CDS | 70.0% | |
AACAGGCGCCACCAGCAGCC+AGG | + | chr6_2:15526365-15526384 | Msa0910670:CDS | 70.0% | |
ACAGGCGCCACCAGCAGCCA+GGG | + | chr6_2:15526366-15526385 | Msa0910670:CDS | 70.0% | |
ACATCCGCCCTGGCTGCTGG+TGG | - | chr6_2:15526376-15526395 | None:intergenic | 70.0% | |
GTCACATCCGCCCTGGCTGC+TGG | - | chr6_2:15526379-15526398 | None:intergenic | 70.0% | |
! | GGCGCCACCAGCAGCCAGGG+CGG | + | chr6_2:15526369-15526388 | Msa0910670:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 15523394 | 15527035 | 15523394 | ID=Msa0910670;Name=Msa0910670 |
chr6_2 | mRNA | 15523394 | 15527035 | 15523394 | ID=Msa0910670-mRNA-1;Parent=Msa0910670;Name=Msa0910670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=120|1|1|1|1|1|2|495|659 |
chr6_2 | exon | 15523394 | 15523782 | 15523394 | ID=Msa0910670-mRNA-1:exon:3432;Parent=Msa0910670-mRNA-1 |
chr6_2 | exon | 15524830 | 15527035 | 15524830 | ID=Msa0910670-mRNA-1:exon:3433;Parent=Msa0910670-mRNA-1 |
chr6_2 | five_prime_UTR | 15523394 | 15523513 | 15523394 | ID=Msa0910670-mRNA-1:five_prime_utr;Parent=Msa0910670-mRNA-1 |
chr6_2 | CDS | 15523514 | 15523782 | 15523514 | ID=Msa0910670-mRNA-1:cds;Parent=Msa0910670-mRNA-1 |
chr6_2 | CDS | 15524830 | 15526540 | 15524830 | ID=Msa0910670-mRNA-1:cds;Parent=Msa0910670-mRNA-1 |
chr6_2 | three_prime_UTR | 15526541 | 15527035 | 15526541 | ID=Msa0910670-mRNA-1:three_prime_utr;Parent=Msa0910670-mRNA-1 |
Gene Sequence |
Protein sequence |