AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0229940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229940 MtrunA17_Chr7g0254631 98.856 699 8 0 1 699 3 701 0.0 1441
Msa0229940 MtrunA17_Chr3g0131131 45.962 681 343 12 30 696 55 724 0.0 599
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229940 AT2G40980.1 74.847 489 120 3 210 698 131 616 0.0 778
Msa0229940 AT2G40980.1 68.702 131 39 1 1 129 1 131 4.50e-39 153

Find 221 sgRNAs with CRISPR-Local

Find 504 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCATATGTCATAGTTTA+TGG 0.113224 2_2:+1717260 None:intergenic
CAGCCTTCTTTACCAGTTCT+AGG 0.227719 2_2:-1718671 Msa0229940:CDS
GAGTAGACTGAGTTTCTTTC+CGG 0.235522 2_2:-1718603 Msa0229940:CDS
CTTGGGAAGATATGAATTTA+TGG 0.240828 2_2:-1717953 Msa0229940:CDS
AGGGCTTGTGGGAGGCATTT+TGG 0.243026 2_2:-1718916 Msa0229940:CDS
ACAATGAACACGATAAAATA+AGG 0.245067 2_2:+1716679 None:intergenic
AATGCAAACTGGGGAGATAT+TGG 0.248944 2_2:-1718398 Msa0229940:CDS
CATTCGTTTGTAAAGATAAT+AGG 0.250132 2_2:-1716797 Msa0229940:three_prime_UTR
TTTCTCCAATTTATAGAATC+TGG 0.256024 2_2:-1718433 Msa0229940:CDS
TTGTTCCAGATTCTATAAAT+TGG 0.266022 2_2:+1718428 None:intergenic
CCCCGAGATTGTCGAAGTTC+AGG 0.286254 2_2:-1718186 Msa0229940:CDS
TACAAACAAGCCGCAGAAAA+AGG 0.289452 2_2:+1718875 None:intergenic
TTTGGGCGGTGAATAAAATA+TGG 0.290513 2_2:-1717099 Msa0229940:three_prime_UTR
ATGTCATAGTTTATGGGATA+TGG 0.306516 2_2:+1717267 None:intergenic
ACAAACTTGGGAATGCAAAC+TGG 0.315758 2_2:-1718409 Msa0229940:CDS
TCCCAGACCCAATTGATTCC+TGG 0.316498 2_2:+1719254 None:intergenic
TTTAAACCTTGAGACTCTAT+TGG 0.319507 2_2:-1716956 Msa0229940:three_prime_UTR
ATGGTAGAGGCAGGCCGATT+TGG 0.323100 2_2:-1717726 Msa0229940:CDS
TTTCTACATGCTGGTATTAA+GGG 0.332290 2_2:-1718935 Msa0229940:CDS
CTGCCTCAATTAATTGCCTT+TGG 0.334524 2_2:-1717864 Msa0229940:CDS
ATGCAAACTGGGGAGATATT+GGG 0.336399 2_2:-1718397 Msa0229940:CDS
ACTCTATTGGTGACATCTTT+CGG 0.336660 2_2:-1716943 Msa0229940:three_prime_UTR
CACCCAATTAGAACAAAATA+AGG 0.345190 2_2:+1717576 None:intergenic
AAAATTTGATTATGCATTAG+AGG 0.346390 2_2:-1719053 Msa0229940:CDS
CCTGAGATTCATGCAGTTGC+AGG 0.346692 2_2:-1716761 Msa0229940:three_prime_UTR
CTCATCTACTTACGCACTTC+AGG 0.350347 2_2:-1717502 Msa0229940:CDS
CTAGACATCCTCATGGGAAA+TGG 0.355262 2_2:-1718760 Msa0229940:CDS
AGATATGAATTTATGGTATC+AGG 0.357593 2_2:-1717946 Msa0229940:CDS
GACCCAATTGATTCCTGGTC+TGG 0.365674 2_2:+1719259 None:intergenic
CTACGCTGCTGGTATTGAAA+TGG 0.366488 2_2:+1718215 None:intergenic
TTCTAACTTCATTGACTCCT+TGG 0.366501 2_2:+1718142 None:intergenic
TCCTGAACTTCGACAATCTC+GGG 0.370817 2_2:+1718185 None:intergenic
TGCAGTGTGTACCATTTATA+TGG 0.379213 2_2:+1716730 None:intergenic
TCTGCAACTGTTTCACCAAT+TGG 0.382568 2_2:+1717750 None:intergenic
GTGTTTCTCATTGCAGTGAT+TGG 0.383884 2_2:-1717125 Msa0229940:three_prime_UTR
TCAATACTTTGGTCTGCCTC+TGG 0.385140 2_2:+1717922 None:intergenic
TGCTAACATGAAGTTCTATC+AGG 0.386975 2_2:-1718849 Msa0229940:CDS
CCTGATCTAGATTCAGTAGA+AGG 0.389502 2_2:-1717405 Msa0229940:CDS
GGGAGATATTGGGGCTCTAC+AGG 0.390148 2_2:-1718387 Msa0229940:CDS
CTCCCAGCTGGAACCAGCTT+GGG 0.390262 2_2:-1717970 Msa0229940:CDS
TGGTGAAACAGTTGCAGAAA+TGG 0.392973 2_2:-1717745 Msa0229940:CDS
CACATGCTAGGATTTCCAAC+TGG 0.395603 2_2:-1717184 Msa0229940:exon
CTTCATTATTGTCAATACTT+TGG 0.395680 2_2:+1717911 None:intergenic
CATGCGTTTGTATTCATTGA+AGG 0.398231 2_2:-1717050 Msa0229940:three_prime_UTR
CTTCTAGTTGATTCTCAGTA+CGG 0.400065 2_2:-1718560 Msa0229940:CDS
AGGGTTGAATACCATATAAA+TGG 0.403524 2_2:-1716741 Msa0229940:three_prime_UTR
TATAGAATCTGGAACAAACT+TGG 0.403612 2_2:-1718422 Msa0229940:CDS
CCTGCAACTGCATGAATCTC+AGG 0.405313 2_2:+1716761 None:intergenic
GACCAGGAATCAATTGGGTC+TGG 0.408789 2_2:-1719256 Msa0229940:CDS
TCCCCAGACCAGGAATCAAT+TGG 0.410170 2_2:-1719262 Msa0229940:CDS
GCTGAAAATGCTATCGCTAA+TGG 0.419287 2_2:-1718827 Msa0229940:CDS
AGAAGAATCGAGAGGCAGTT+AGG 0.419787 2_2:-1718266 Msa0229940:CDS
GGAAGGCTTGGAGGTCTTTG+TGG 0.422738 2_2:-1718806 Msa0229940:CDS
AACAGATCTGTTTCTATATG+TGG 0.425148 2_2:-1718003 Msa0229940:CDS
ATACAAGAAGTAATCAAAAC+TGG 0.426658 2_2:-1718068 Msa0229940:CDS
ACCCAATTGATTCCTGGTCT+GGG 0.427381 2_2:+1719260 None:intergenic
TTATGCTATTCGAATGTTGT+TGG 0.428240 2_2:-1718636 Msa0229940:CDS
ATCATAATTGCCATTGGTGC+AGG 0.428659 2_2:-1716997 Msa0229940:three_prime_UTR
AACAGCTAGACCTCTGATAT+CGG 0.430946 2_2:+1718706 None:intergenic
AACAGAGTGCTTGGGCATTC+CGG 0.431857 2_2:+1718328 None:intergenic
TGAAGTTCAACCAACTCAAA+TGG 0.433013 2_2:+1719076 None:intergenic
TTCTAGTTGATTCTCAGTAC+GGG 0.438562 2_2:-1718559 Msa0229940:CDS
TAGAAGAAGGGTCTATGTTA+TGG 0.439703 2_2:-1718124 Msa0229940:CDS
CTTGGAGGTCTTTGTGGCAC+TGG 0.440275 2_2:-1718800 Msa0229940:CDS
TAAATCTTCAACAGAGTGCT+TGG 0.441724 2_2:+1718319 None:intergenic
CTAACACAGATCACGTTCTC+TGG 0.441774 2_2:+1717615 None:intergenic
TTCTTAGAAGCGTTAATTCA+AGG 0.443007 2_2:+1718729 None:intergenic
CTTCCCAAGCTGGTTCCAGC+TGG 0.444255 2_2:+1717967 None:intergenic
TGCTGGTATTAAGGGCTTGT+GGG 0.446395 2_2:-1718927 Msa0229940:CDS
CAGAGAACGTGATCTGTGTT+AGG 0.451934 2_2:-1717614 Msa0229940:CDS
CTCAATTAATTGCCTTTGGA+AGG 0.452788 2_2:-1717860 Msa0229940:CDS
AATAGAGCTTCTCCTAGAAC+TGG 0.453416 2_2:+1718659 None:intergenic
TGTCATCTGGTGGTAGGTCT+CGG 0.453644 2_2:-1719216 Msa0229940:CDS
ACTCGTCAAGAACAATGAAA+TGG 0.455292 2_2:+1716851 None:intergenic
TACGCTGCTGGTATTGAAAT+GGG 0.457919 2_2:+1718216 None:intergenic
ATCCCATAAACTATGACATA+TGG 0.458143 2_2:-1717263 Msa0229940:CDS
GTCACAATTTCCACCAGAGC+TGG 0.460018 2_2:+1717809 None:intergenic
CAATGAACACGATAAAATAA+GGG 0.465716 2_2:+1716680 None:intergenic
GGGCTCTCATCCCTCCCAGC+TGG 0.467042 2_2:-1717982 Msa0229940:CDS
TAGACATCCTCATGGGAAAT+GGG 0.467130 2_2:-1718759 Msa0229940:CDS
ACAAATACTGTGCTAGGATC+CGG 0.468978 2_2:+1718584 None:intergenic
AACTGTTAAAACTCATGTCT+TGG 0.469481 2_2:+1716880 None:intergenic
GCTATCGCTAATGGAAGGCT+TGG 0.469516 2_2:-1718818 Msa0229940:CDS
GGAGGATTCAGATGGACAAA+AGG 0.470591 2_2:-1718099 Msa0229940:CDS
TATAAATTTGTTGATAGTGA+CGG 0.471295 2_2:-1719175 Msa0229940:CDS
ACCACCAGAGTGAATGGAAA+TGG 0.473208 2_2:-1718239 Msa0229940:CDS
CACTGTATTATGCAATATGC+CGG 0.475591 2_2:-1718347 Msa0229940:CDS
GTATTCATTGAAGGATTGGT+TGG 0.476169 2_2:-1717041 Msa0229940:three_prime_UTR
TATGGGAAGTGGGAACGAAC+TGG 0.476814 2_2:+1716622 None:intergenic
GGAGATACCACCAGAGTGAA+TGG 0.479369 2_2:-1718245 Msa0229940:CDS
CAAGCTGGTTCCAGCTGGGA+GGG 0.480689 2_2:+1717972 None:intergenic
ATTGGACTGATCACAAGAAC+AGG 0.480991 2_2:+1717768 None:intergenic
AAGAGGTCCAGTGTGTCATC+TGG 0.482225 2_2:-1719229 Msa0229940:CDS
CTCTCAACTGCTACATCGGC+TGG 0.483404 2_2:-1717660 Msa0229940:CDS
CCTCCCAGCTGGAACCAGCT+TGG 0.487865 2_2:-1717971 Msa0229940:CDS
ATCCTGAACTTCGACAATCT+CGG 0.488114 2_2:+1718184 None:intergenic
TATAGAAACAGATCTGTTCC+TGG 0.488142 2_2:+1718008 None:intergenic
AGCCATATGTCATAGTTTAT+GGG 0.488169 2_2:+1717261 None:intergenic
CCTTCTACTGAATCTAGATC+AGG 0.491986 2_2:+1717405 None:intergenic
AATATTCATGAAGATGATCA+TGG 0.492106 2_2:-1717222 Msa0229940:CDS
GTTCTTGTGATCAGTCCAAT+TGG 0.498107 2_2:-1717765 Msa0229940:CDS
ATCGCTAATGGAAGGCTTGG+AGG 0.498607 2_2:-1718815 Msa0229940:CDS
GAGAAATGAAGATTCATAGC+AGG 0.501345 2_2:+1717522 None:intergenic
CAAACTTGGGAATGCAAACT+GGG 0.501616 2_2:-1718408 Msa0229940:CDS
TACAATGGAGAGAGACATCT+TGG 0.502840 2_2:-1717377 Msa0229940:CDS
GAGTCAATGAAGTTAGAAGA+AGG 0.503840 2_2:-1718137 Msa0229940:CDS
CTGCAATGAGAAACACGTTA+AGG 0.507140 2_2:+1717132 None:intergenic
TGTCGAAGGCCCAGCTCTGG+TGG 0.510024 2_2:-1717819 Msa0229940:CDS
CATTGTCGAAGGCCCAGCTC+TGG 0.510153 2_2:-1717822 Msa0229940:CDS
GTCTTGGCTCCTCAAAATGA+AGG 0.510740 2_2:+1716896 None:intergenic
ACCAGGAATCAATTGGGTCT+GGG 0.511267 2_2:-1719255 Msa0229940:CDS
AGATTAATTCAGCAGAAGCT+TGG 0.511891 2_2:-1717348 Msa0229940:CDS
ATAGAATCTGGAACAAACTT+GGG 0.512068 2_2:-1718421 Msa0229940:CDS
AAATTTGATTATGCATTAGA+GGG 0.512978 2_2:-1719052 Msa0229940:CDS
CTTCCAAAGGCAATTAATTG+AGG 0.514234 2_2:+1717861 None:intergenic
CTGGGCCTTCGACAATGACC+AGG 0.517442 2_2:+1717828 None:intergenic
ATGCTGGTATTAAGGGCTTG+TGG 0.519513 2_2:-1718928 Msa0229940:CDS
TAGCGTCATCTGAACCAAAT+CGG 0.519610 2_2:+1717712 None:intergenic
AGAAGGGTCTATGTTATGGC+TGG 0.520096 2_2:-1718120 Msa0229940:CDS
AAATCTTCAACAGAGTGCTT+GGG 0.521067 2_2:+1718320 None:intergenic
TTCCCAAGCTGGTTCCAGCT+GGG 0.522150 2_2:+1717968 None:intergenic
TGCAAACTGGGGAGATATTG+GGG 0.525094 2_2:-1718396 Msa0229940:CDS
GTTTGTATTCATTGAAGGAT+TGG 0.525738 2_2:-1717045 Msa0229940:three_prime_UTR
GCCATTTCCATTCACTCTGG+TGG 0.525891 2_2:+1718238 None:intergenic
GTAGAAGCATGAACAGCATT+AGG 0.525938 2_2:+1719001 None:intergenic
AGAAGAACAAATACTGTGCT+AGG 0.527370 2_2:+1718578 None:intergenic
TTTCAGGAATTGGACCCAGT+TGG 0.530146 2_2:+1717169 None:intergenic
AGCACTCTCAACTGCTACAT+CGG 0.531267 2_2:-1717664 Msa0229940:CDS
AAATTCATATCTTCCCAAGC+TGG 0.531371 2_2:+1717957 None:intergenic
GTGGAAATTGTGACCACCCT+TGG 0.533087 2_2:-1717800 Msa0229940:CDS
CTAGAACTGGTAAAGAAGGC+TGG 0.534693 2_2:+1718672 None:intergenic
TCTCCTAGAACTGGTAAAGA+AGG 0.536896 2_2:+1718668 None:intergenic
TGGTTGGTGTATTTCATCAA+AGG 0.537499 2_2:-1717025 Msa0229940:three_prime_UTR
AACGTGATCTGTGTTAGGTC+TGG 0.538417 2_2:-1717609 Msa0229940:CDS
CCCCAGACCAGGAATCAATT+GGG 0.540792 2_2:-1719261 Msa0229940:CDS
GGAAATTGACAGCACATGCT+AGG 0.541219 2_2:-1717196 Msa0229940:exon
CCAGTGTGTCATCTGGTGGT+AGG 0.544409 2_2:-1719222 Msa0229940:CDS
CTGAGATTCATGCAGTTGCA+GGG 0.545808 2_2:-1716760 Msa0229940:three_prime_UTR
AGCAGTCCAACCTGCACCAA+TGG 0.546777 2_2:+1716987 None:intergenic
CCAAGCTGGTTCCAGCTGGG+AGG 0.553218 2_2:+1717971 None:intergenic
AGTGGGAACGAACTGGAGAC+AGG 0.557059 2_2:+1716629 None:intergenic
GTTGCAGAAATGGTAGAGGC+AGG 0.557961 2_2:-1717735 Msa0229940:CDS
AGTCAATGAAGTTAGAAGAA+GGG 0.558174 2_2:-1718136 Msa0229940:CDS
GACTACGGCATGGAGACATC+AGG 0.558917 2_2:-1717638 Msa0229940:CDS
GAGCATATCATAATTGCCAT+TGG 0.559030 2_2:-1717003 Msa0229940:three_prime_UTR
CAATACAACTTACTTTGACA+AGG 0.559105 2_2:+1716827 None:intergenic
ACTATGACATATGGCTGAGA+AGG 0.559490 2_2:-1717254 Msa0229940:CDS
ATTTGATGTGCCATTTGAGT+TGG 0.560840 2_2:-1719086 Msa0229940:CDS
CTGCTACATCGGCTGGACTA+CGG 0.560902 2_2:-1717653 Msa0229940:CDS
TAATTGCCATTGGTGCAGGT+TGG 0.561254 2_2:-1716993 Msa0229940:three_prime_UTR
ATGCTTTATTATTCATGCGG+TGG 0.561436 2_2:-1717435 Msa0229940:CDS
TTGAAGACGTGAACTATGAT+CGG 0.562266 2_2:+1718292 None:intergenic
AGAGTGCTGATAAGCAATCA+TGG 0.566608 2_2:+1717679 None:intergenic
GAGGATTCAGATGGACAAAA+GGG 0.570645 2_2:-1718098 Msa0229940:CDS
TCAAGAACAATGAAATGGAA+AGG 0.571054 2_2:+1716856 None:intergenic
ACAGATCTGTTTCTATATGT+GGG 0.571974 2_2:-1718002 Msa0229940:CDS
CTGGTGGTAGGTCTCGGAAT+CGG 0.574466 2_2:-1719210 Msa0229940:CDS
CAGTAGAAGGAGCGCTACAA+TGG 0.582919 2_2:-1717392 Msa0229940:CDS
TTGACAATAATGAAGCAGAA+AGG 0.586050 2_2:-1717903 Msa0229940:CDS
TATATGCTTTATTATTCATG+CGG 0.586795 2_2:-1717438 Msa0229940:CDS
AACAGTTGCAGAAATGGTAG+AGG 0.587170 2_2:-1717739 Msa0229940:CDS
CTATTCGAATGTTGTTGGCA+AGG 0.588289 2_2:-1718631 Msa0229940:CDS
TTATGAATGTGCTGCTGAGT+GGG 0.588709 2_2:-1718480 Msa0229940:CDS
TCACAATTTCCACCAGAGCT+GGG 0.590244 2_2:+1717810 None:intergenic
TGGGCCATTTCCATTCACTC+TGG 0.590821 2_2:+1718235 None:intergenic
ATATTGCATAATACAGTGAA+AGG 0.591146 2_2:+1718352 None:intergenic
GGAGAGAGACATCTTGGTCA+AGG 0.592311 2_2:-1717371 Msa0229940:CDS
ACATGCTAGGATTTCCAACT+GGG 0.592467 2_2:-1717183 Msa0229940:exon
AATAATTCTAGACATCCTCA+TGG 0.597418 2_2:-1718767 Msa0229940:CDS
TTATGTCAAGGTCGATTCCA+AGG 0.598570 2_2:-1718159 Msa0229940:CDS
ACATATGGCTGAGAAGGTTG+AGG 0.598573 2_2:-1717248 Msa0229940:CDS
GATATCAGAGGTCTAGCTGT+TGG 0.599351 2_2:-1718704 Msa0229940:CDS
AATTGTGACCACCCTTGGTG+TGG 0.602605 2_2:-1717795 Msa0229940:CDS
ATAAATGGTACACACTGCAC+AGG 0.602620 2_2:-1716726 Msa0229940:three_prime_UTR
ATAGAAACAGATCTGTTCCT+GGG 0.603573 2_2:+1718009 None:intergenic
TGTAGGTAGATCCCCAGACC+AGG 0.603796 2_2:-1719272 Msa0229940:intron
TACACCCTGGTCATTGTCGA+AGG 0.604163 2_2:-1717833 Msa0229940:CDS
GATTATGTCGACAGTCTATG+TGG 0.604719 2_2:-1717294 Msa0229940:CDS
CCTGAACTTCGACAATCTCG+GGG 0.605553 2_2:+1718186 None:intergenic
TCATGAAGATGATCATGGAA+AGG 0.606776 2_2:-1717217 Msa0229940:CDS
GCATCTTATGTTGAAGACCC+AGG 0.608281 2_2:-1718026 Msa0229940:CDS
AATAATAAAGCATATAGACT+AGG 0.609211 2_2:+1717445 None:intergenic
TCTAGTTGATTCTCAGTACG+GGG 0.609471 2_2:-1718558 Msa0229940:CDS
AGAAATGAAGATTCATAGCA+GGG 0.610581 2_2:+1717523 None:intergenic
CCCAATTGATTCCTGGTCTG+GGG 0.612377 2_2:+1719261 None:intergenic
TGGTAGGTCTCGGAATCGGA+AGG 0.614968 2_2:-1719206 Msa0229940:CDS
CTCTATCTTCAAGAATAGCA+TGG 0.617992 2_2:+1717550 None:intergenic
ATAATTCTAGACATCCTCAT+GGG 0.619776 2_2:-1718766 Msa0229940:CDS
AGGGTCTATGTTATGGCTGG+AGG 0.620896 2_2:-1718117 Msa0229940:CDS
ACATCGGCTGGACTACGGCA+TGG 0.621645 2_2:-1717648 Msa0229940:CDS
TTATGGCTGGAGGATTCAGA+TGG 0.622574 2_2:-1718107 Msa0229940:CDS
CAATTGGGTCTGGGACAAAG+AGG 0.627588 2_2:-1719246 Msa0229940:CDS
ATTGTGACCACCCTTGGTGT+GGG 0.628764 2_2:-1717794 Msa0229940:CDS
ATGTCACCAATAGAGTCTCA+AGG 0.631365 2_2:+1716950 None:intergenic
AAAATGCTATCGCTAATGGA+AGG 0.633589 2_2:-1718823 Msa0229940:CDS
CTGCAACTGCATGAATCTCA+GGG 0.636483 2_2:+1716762 None:intergenic
TGGTATTAAGGGCTTGTGGG+AGG 0.641546 2_2:-1718924 Msa0229940:CDS
AGGGTGTATGAGCCTTCCAA+AGG 0.645844 2_2:+1717848 None:intergenic
GAACAGGAGTCCCACACCAA+GGG 0.647420 2_2:+1717784 None:intergenic
TCTACTTACGCACTTCAGGA+AGG 0.648241 2_2:-1717498 Msa0229940:CDS
AGGTCCAGTGTGTCATCTGG+TGG 0.648424 2_2:-1719226 Msa0229940:CDS
TAGGCTTTCTGCATCAGATG+CGG 0.649383 2_2:+1717464 None:intergenic
AATTTGATTATGCATTAGAG+GGG 0.649477 2_2:-1719051 Msa0229940:CDS
CAGGAGTCCCACACCAAGGG+TGG 0.654864 2_2:+1717787 None:intergenic
AGCAAAAGCTTTCAGCACAG+TGG 0.657474 2_2:+1717317 None:intergenic
AGTTCAGGATGATTATGTCA+AGG 0.662091 2_2:-1718171 Msa0229940:CDS
CTAGTTGATTCTCAGTACGG+GGG 0.666070 2_2:-1718557 Msa0229940:CDS
ATTTATGGTATCAGGTCCAG+AGG 0.666301 2_2:-1717938 Msa0229940:CDS
TTTATGAATGTGCTGCTGAG+TGG 0.667528 2_2:-1718481 Msa0229940:CDS
TTTGGAAGGCTCATACACCC+TGG 0.667640 2_2:-1717846 Msa0229940:CDS
AGAACAGGAGTCCCACACCA+AGG 0.677710 2_2:+1717783 None:intergenic
ATTATGTCGACAGTCTATGT+GGG 0.678690 2_2:-1717293 Msa0229940:CDS
AGATGATCCCATTTCCCATG+AGG 0.683325 2_2:+1718752 None:intergenic
CTTCTAAGAACCGATATCAG+AGG 0.684653 2_2:-1718716 Msa0229940:CDS
CCTACCACCAGATGACACAC+TGG 0.697213 2_2:+1719222 None:intergenic
TTCAAACAAGAAGAATCGAG+AGG 0.700685 2_2:-1718274 Msa0229940:CDS
TCTGTGTTAGGTCTGGTGTG+AGG 0.703035 2_2:-1717602 Msa0229940:CDS
TGGGCCTTCGACAATGACCA+GGG 0.704817 2_2:+1717829 None:intergenic
GAACTGGTAAAGAAGGCTGG+CGG 0.719336 2_2:+1718675 None:intergenic
CTGAACTTCGACAATCTCGG+GGG 0.725557 2_2:+1718187 None:intergenic
AAACTTGGGAATGCAAACTG+GGG 0.727261 2_2:-1718407 Msa0229940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTATTTCTCAATT+TGG - chr2_2:1716801-1716820 Msa0229940:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTTTTTGG+AGG - chr2_2:1717123-1717142 Msa0229940:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTTTTGGA+GGG - chr2_2:1717124-1717143 Msa0229940:three_prime_UTR 10.0%
!!! TTTTTTTTTAAGACTATAAT+AGG - chr2_2:1717287-1717306 Msa0229940:CDS 10.0%
!! CATTAAATAATTTATGTATT+TGG - chr2_2:1717568-1717587 Msa0229940:CDS 10.0%
!!! ATAAATTTTAAACAATAATC+GGG - chr2_2:1718876-1718895 Msa0229940:CDS 10.0%
!! TATAAATTTATAATTGATAC+TGG - chr2_2:1719520-1719539 Msa0229940:intron 10.0%
!! ATAAATTTATAATTGATACT+GGG - chr2_2:1719521-1719540 Msa0229940:intron 10.0%
!!! TTTTTTTTTTTTTTTTGGAG+GGG - chr2_2:1717125-1717144 Msa0229940:three_prime_UTR 15.0%
!!! CTAATTATTTGATTTTTTTC+TGG + chr2_2:1717444-1717463 None:intergenic 15.0%
!! ATATCTATTTAGTTAAATAG+CGG + chr2_2:1718209-1718228 None:intergenic 15.0%
!!! AAAAGTATTGTAGTTATTTT+AGG - chr2_2:1718616-1718635 Msa0229940:CDS 15.0%
!! TAAATTTATAATTGATACTG+GGG - chr2_2:1719522-1719541 Msa0229940:intron 15.0%
!!! ATGTAATGACTTTTTTTTTT+AGG - chr2_2:1719626-1719645 Msa0229940:intron 15.0%
!! ATATACTGATATATTAAATC+TGG - chr2_2:1720237-1720256 Msa0229940:intron 15.0%
!! TATACTGATATATTAAATCT+GGG - chr2_2:1720238-1720257 Msa0229940:intron 15.0%
!!! TATAATGATTATTCCTTTTT+AGG + chr2_2:1720600-1720619 None:intergenic 15.0%
!!! TCACAAAATTTTAGGAATTT+AGG - chr2_2:1716929-1716948 Msa0229940:three_prime_UTR 20.0%
!!! CACAAAATTTTAGGAATTTA+GGG - chr2_2:1716930-1716949 Msa0229940:three_prime_UTR 20.0%
!! AGTTATTTAACGAGAATATA+AGG + chr2_2:1717785-1717804 None:intergenic 20.0%
!! ATTCTGAATGAATCAAAAAT+AGG + chr2_2:1718544-1718563 None:intergenic 20.0%
!!! ACAAAGATAACTTTTTGAAA+AGG + chr2_2:1718695-1718714 None:intergenic 20.0%
!! TCAAAAACAAAAAAACATAG+AGG - chr2_2:1718763-1718782 Msa0229940:CDS 20.0%
!!! TTGAATTTATTGCTTTTAGT+TGG - chr2_2:1718827-1718846 Msa0229940:CDS 20.0%
!!! TTTTACAAAAGACTCAATTT+AGG - chr2_2:1719290-1719309 Msa0229940:intron 20.0%
!! TTTACAAAAGACTCAATTTA+GGG - chr2_2:1719291-1719310 Msa0229940:intron 20.0%
!! TTTACAGTAAAAATAAGTCA+GGG + chr2_2:1719416-1719435 None:intergenic 20.0%
!! ATTTACAGTAAAAATAAGTC+AGG + chr2_2:1719417-1719436 None:intergenic 20.0%
!!! ATTTTTACTGTAAATTGTAC+TGG - chr2_2:1719422-1719441 Msa0229940:intron 20.0%
!!! ATACTTATGTCTATTTTTGT+AGG + chr2_2:1719715-1719734 None:intergenic 20.0%
!! AAACAAAACACATGTATATT+AGG - chr2_2:1719851-1719870 Msa0229940:intron 20.0%
!! ATATACTGCTATATATTGAT+AGG - chr2_2:1720201-1720220 Msa0229940:intron 20.0%
!! CACTTCAATATAATATATAG+TGG - chr2_2:1720413-1720432 Msa0229940:intron 20.0%
!! AATATAATATATAGTGGTTG+CGG - chr2_2:1720419-1720438 Msa0229940:intron 20.0%
!!! TATAAATTTGTTGATAGTGA+CGG - chr2_2:1720745-1720764 Msa0229940:intron 20.0%
!! AAAATTTGATTATGCATTAG+AGG - chr2_2:1720867-1720886 Msa0229940:intron 20.0%
!! AAATTTGATTATGCATTAGA+GGG - chr2_2:1720868-1720887 Msa0229940:intron 20.0%
!!! AACCTTATTTTGTTCTAATT+GGG - chr2_2:1722342-1722361 Msa0229940:intron 20.0%
!! AATAATAAAGCATATAGACT+AGG + chr2_2:1722478-1722497 None:intergenic 20.0%
!!! TATATGCTTTATTATTCATG+CGG - chr2_2:1722482-1722501 Msa0229940:intron 20.0%
!! TGCATTTTTAATAAGCTATC+TGG + chr2_2:1716653-1716672 None:intergenic 25.0%
! GATAGCTTATTAAAAATGCA+AGG - chr2_2:1716653-1716672 Msa0229940:three_prime_UTR 25.0%
!! CGAATGTTTCACAAAATTTT+AGG - chr2_2:1716921-1716940 Msa0229940:three_prime_UTR 25.0%
!!! TTTCATTTTGCGTTGTTTTT+GGG - chr2_2:1717033-1717052 Msa0229940:three_prime_UTR 25.0%
!!! AAGTTTTGACTCTAAAATGT+AGG - chr2_2:1717175-1717194 Msa0229940:three_prime_UTR 25.0%
! GTAAATTGTCTCTTGTAAAT+AGG + chr2_2:1717538-1717557 None:intergenic 25.0%
! GGATATAACAATTGTTCTTA+AGG - chr2_2:1717705-1717724 Msa0229940:CDS 25.0%
!!! TGCTTTTGTTTAACAATATG+CGG - chr2_2:1718286-1718305 Msa0229940:CDS 25.0%
! ACAAAAATATCGATGAAGTT+TGG + chr2_2:1718349-1718368 None:intergenic 25.0%
! AAAAAGTTCAATATTTCTCC+AGG - chr2_2:1718449-1718468 Msa0229940:CDS 25.0%
! AAAAGTTCAATATTTCTCCA+GGG - chr2_2:1718450-1718469 Msa0229940:CDS 25.0%
!! AAATCCATTTGACTCTAAAA+AGG - chr2_2:1718658-1718677 Msa0229940:CDS 25.0%
! TTTAAACAATAATCGGGTTA+AGG - chr2_2:1718882-1718901 Msa0229940:CDS 25.0%
! AGAAAAAAGGATTAAGGTTT+CGG + chr2_2:1719131-1719150 None:intergenic 25.0%
!!! TGATTTGTTTTGAGATATAC+TGG - chr2_2:1719206-1719225 Msa0229940:CDS 25.0%
! CATAAAAACATAGAAGTTAC+TGG + chr2_2:1719266-1719285 None:intergenic 25.0%
! AAAACAAAAATGAGTTGTGT+TGG - chr2_2:1719378-1719397 Msa0229940:intron 25.0%
! AAACAAAAATGAGTTGTGTT+GGG - chr2_2:1719379-1719398 Msa0229940:intron 25.0%
!! ATATCATGTTTGTGATTTTC+TGG - chr2_2:1719766-1719785 Msa0229940:intron 25.0%
!! ACTTTAAGAAAGCAATTTGT+GGG + chr2_2:1719878-1719897 None:intergenic 25.0%
!! TACTTTAAGAAAGCAATTTG+TGG + chr2_2:1719879-1719898 None:intergenic 25.0%
! ACAAATTGCTTTCTTAAAGT+AGG - chr2_2:1719878-1719897 Msa0229940:intron 25.0%
!!! ATTGTTTTTGCACATATGTT+AGG - chr2_2:1720027-1720046 Msa0229940:intron 25.0%
! GATTTCTTTAAGTAGACATA+TGG - chr2_2:1720093-1720112 Msa0229940:intron 25.0%
!!! TCTTGGTTTTTTTTTTCTTC+TGG - chr2_2:1720134-1720153 Msa0229940:intron 25.0%
! TTAAATTTACCAGCAAAGAA+GGG - chr2_2:1720282-1720301 Msa0229940:intron 25.0%
! ATATAATATATAGTGGTTGC+GGG - chr2_2:1720420-1720439 Msa0229940:intron 25.0%
! CATCTAACTATAAGTGATTA+AGG - chr2_2:1720449-1720468 Msa0229940:intron 25.0%
! TGACAATAGAAATTCAACAA+AGG + chr2_2:1720483-1720502 None:intergenic 25.0%
! TGAAAATTCAGAGATAAGAA+AGG + chr2_2:1720518-1720537 None:intergenic 25.0%
!!! AATGATTATTCCTTTTTAGG+AGG + chr2_2:1720597-1720616 None:intergenic 25.0%
! TGAATGAAAAACTTGTAGAT+TGG - chr2_2:1720770-1720789 Msa0229940:intron 25.0%
! AATTTGATTATGCATTAGAG+GGG - chr2_2:1720869-1720888 Msa0229940:intron 25.0%
! TTTCTCCAATTTATAGAATC+TGG - chr2_2:1721487-1721506 Msa0229940:intron 25.0%
! TTGTTCCAGATTCTATAAAT+TGG + chr2_2:1721495-1721514 None:intergenic 25.0%
! ATATTGCATAATACAGTGAA+AGG + chr2_2:1721571-1721590 None:intergenic 25.0%
! ATACAAGAAGTAATCAAAAC+TGG - chr2_2:1721852-1721871 Msa0229940:intron 25.0%
! AGATATGAATTTATGGTATC+AGG - chr2_2:1721974-1721993 Msa0229940:intron 25.0%
! CTTCATTATTGTCAATACTT+TGG + chr2_2:1722012-1722031 None:intergenic 25.0%
!!! CAACCTTATTTTGTTCTAAT+TGG - chr2_2:1722341-1722360 Msa0229940:intron 25.0%
!!! TTATTTTGTTCTAATTGGGT+GGG - chr2_2:1722346-1722365 Msa0229940:intron 25.0%
! AATATTCATGAAGATGATCA+TGG - chr2_2:1722698-1722717 Msa0229940:intron 25.0%
! CATTCGTTTGTAAAGATAAT+AGG - chr2_2:1723123-1723142 Msa0229940:intron 25.0%
! CAATGAACACGATAAAATAA+GGG + chr2_2:1723243-1723262 None:intergenic 25.0%
! ACAATGAACACGATAAAATA+AGG + chr2_2:1723244-1723263 None:intergenic 25.0%
GTGAAAGAAGAGAGAATTTA+GGG + chr2_2:1716726-1716745 None:intergenic 30.0%
AGTGAAAGAAGAGAGAATTT+AGG + chr2_2:1716727-1716746 None:intergenic 30.0%
AAAACACAGCTTAGAATAGA+CGG + chr2_2:1716764-1716783 None:intergenic 30.0%
!!! TAGTGTTTTCGTTTGTTGTT+TGG - chr2_2:1716875-1716894 Msa0229940:three_prime_UTR 30.0%
!! GTTTCATTTTGCGTTGTTTT+TGG - chr2_2:1717032-1717051 Msa0229940:three_prime_UTR 30.0%
AGAGTCAAAACTTAGTCAAA+GGG + chr2_2:1717168-1717187 None:intergenic 30.0%
TAGAGTCAAAACTTAGTCAA+AGG + chr2_2:1717169-1717188 None:intergenic 30.0%
!! ACTCTAAAATGTAGGTGATT+TGG - chr2_2:1717183-1717202 Msa0229940:exon 30.0%
! TAAAATGTAGGTGATTTGGA+GGG - chr2_2:1717187-1717206 Msa0229940:exon 30.0%
GAGTATATATTAAGGGATCA+CGG + chr2_2:1717507-1717526 None:intergenic 30.0%
GTCAACTTTCTCTTGTAAAT+AGG - chr2_2:1717637-1717656 Msa0229940:CDS 30.0%
CGCAAGTTAAATTGTATGAT+CGG + chr2_2:1717857-1717876 None:intergenic 30.0%
! AAATCAAATGACCGTTTTGA+GGG + chr2_2:1718081-1718100 None:intergenic 30.0%
! AAAATCAAATGACCGTTTTG+AGG + chr2_2:1718082-1718101 None:intergenic 30.0%
CTATACTACAGATCTATTAG+TGG - chr2_2:1718167-1718186 Msa0229940:CDS 30.0%
ATTTAGTTAAATAGCGGCTA+TGG + chr2_2:1718203-1718222 None:intergenic 30.0%
TGATTACAATGTGAAAGTGA+TGG - chr2_2:1718262-1718281 Msa0229940:CDS 30.0%
AAAGTTCAATATTTCTCCAG+GGG - chr2_2:1718451-1718470 Msa0229940:CDS 30.0%
!!! AGTACCTTTTTAGAGTCAAA+TGG + chr2_2:1718665-1718684 None:intergenic 30.0%
! TTTTGAGCAAACAATCTCTA+TGG + chr2_2:1718749-1718768 None:intergenic 30.0%
TGTCTTAACAGTGATAAACA+GGG + chr2_2:1719019-1719038 None:intergenic 30.0%
AAGCATCTGAAAATAACAGA+TGG - chr2_2:1719090-1719109 Msa0229940:CDS 30.0%
CTTGAGAGAAAAAAGGATTA+AGG + chr2_2:1719137-1719156 None:intergenic 30.0%
ATCAAGACTTGAGAGAAAAA+AGG + chr2_2:1719144-1719163 None:intergenic 30.0%
GTTGCATCGAATTTAATGAT+TGG - chr2_2:1719228-1719247 Msa0229940:CDS 30.0%
TTTACTGTAAATTGTACTGG+AGG - chr2_2:1719425-1719444 Msa0229940:intron 30.0%
TTTATAATAAAGGACAAGCC+AGG + chr2_2:1719506-1719525 None:intergenic 30.0%
!!! CTGAAGAAATTGTTTTTTCC+TGG + chr2_2:1719677-1719696 None:intergenic 30.0%
!! TATTTTTGTAGGCCAAGATA+AGG + chr2_2:1719704-1719723 None:intergenic 30.0%
AACATGATATGCAGACATTT+GGG + chr2_2:1719756-1719775 None:intergenic 30.0%
AAACATGATATGCAGACATT+TGG + chr2_2:1719757-1719776 None:intergenic 30.0%
!!! TTGTGATTTTCTGGAACTTT+TGG - chr2_2:1719775-1719794 Msa0229940:intron 30.0%
! TTGGACTGTGTTAATTTTGA+AGG - chr2_2:1719794-1719813 Msa0229940:intron 30.0%
!!! TTTTTTCAGTACCAGAGAAA+GGG + chr2_2:1719834-1719853 None:intergenic 30.0%
! TAACTTTTATGCACCCTATA+AGG - chr2_2:1719971-1719990 Msa0229940:intron 30.0%
GTGTTTATACTTATAGTCGA+CGG - chr2_2:1720156-1720175 Msa0229940:intron 30.0%
GTTAAATTTACCAGCAAAGA+AGG - chr2_2:1720281-1720300 Msa0229940:intron 30.0%
GAGATCAAAATGATCAAACA+TGG + chr2_2:1720394-1720413 None:intergenic 30.0%
! TATCTCTGAATTTTCAGTTC+AGG - chr2_2:1720522-1720541 Msa0229940:intron 30.0%
TTTCTACTATCCTCCTAAAA+AGG - chr2_2:1720584-1720603 Msa0229940:intron 30.0%
! ATTGAAGATTTTCTACATGC+TGG - chr2_2:1720976-1720995 Msa0229940:intron 30.0%
! TTTTCTACATGCTGGTATTA+AGG - chr2_2:1720984-1721003 Msa0229940:intron 30.0%
TTTCTACATGCTGGTATTAA+GGG - chr2_2:1720985-1721004 Msa0229940:intron 30.0%
AATAATTCTAGACATCCTCA+TGG - chr2_2:1721153-1721172 Msa0229940:intron 30.0%
ATAATTCTAGACATCCTCAT+GGG - chr2_2:1721154-1721173 Msa0229940:intron 30.0%
!! TTCTTAGAAGCGTTAATTCA+AGG + chr2_2:1721194-1721213 None:intergenic 30.0%
TTATGCTATTCGAATGTTGT+TGG - chr2_2:1721284-1721303 Msa0229940:intron 30.0%
! TATAGAATCTGGAACAAACT+TGG - chr2_2:1721498-1721517 Msa0229940:intron 30.0%
! ATAGAATCTGGAACAAACTT+GGG - chr2_2:1721499-1721518 Msa0229940:intron 30.0%
AGTCAATGAAGTTAGAAGAA+GGG - chr2_2:1721784-1721803 Msa0229940:intron 30.0%
!! AACAGATCTGTTTCTATATG+TGG - chr2_2:1721917-1721936 Msa0229940:intron 30.0%
!! ACAGATCTGTTTCTATATGT+GGG - chr2_2:1721918-1721937 Msa0229940:intron 30.0%
CTTGGGAAGATATGAATTTA+TGG - chr2_2:1721967-1721986 Msa0229940:intron 30.0%
TTGACAATAATGAAGCAGAA+AGG - chr2_2:1722017-1722036 Msa0229940:intron 30.0%
CACCCAATTAGAACAAAATA+AGG + chr2_2:1722347-1722366 None:intergenic 30.0%
!!! CTTATTTTGTTCTAATTGGG+TGG - chr2_2:1722345-1722364 Msa0229940:intron 30.0%
! TATTTTGTTCTAATTGGGTG+GGG - chr2_2:1722347-1722366 Msa0229940:intron 30.0%
AGAAATGAAGATTCATAGCA+GGG + chr2_2:1722400-1722419 None:intergenic 30.0%
ATGTCATAGTTTATGGGATA+TGG + chr2_2:1722656-1722675 None:intergenic 30.0%
ATCCCATAAACTATGACATA+TGG - chr2_2:1722657-1722676 Msa0229940:intron 30.0%
AGCCATATGTCATAGTTTAT+GGG + chr2_2:1722662-1722681 None:intergenic 30.0%
! AGAGTTTTCATTTCAGGAAT+TGG + chr2_2:1722764-1722783 None:intergenic 30.0%
! GGTTATAGAGTTTTCATTTC+AGG + chr2_2:1722770-1722789 None:intergenic 30.0%
! ATTGCAGTGATTGGATTTTT+GGG - chr2_2:1722804-1722823 Msa0229940:intron 30.0%
GTTTGTATTCATTGAAGGAT+TGG - chr2_2:1722875-1722894 Msa0229940:intron 30.0%
TTTAAACCTTGAGACTCTAT+TGG - chr2_2:1722964-1722983 Msa0229940:intron 30.0%
AACTGTTAAAACTCATGTCT+TGG + chr2_2:1723043-1723062 None:intergenic 30.0%
TCAAGAACAATGAAATGGAA+AGG + chr2_2:1723067-1723086 None:intergenic 30.0%
CAATACAACTTACTTTGACA+AGG + chr2_2:1723096-1723115 None:intergenic 30.0%
AGGGTTGAATACCATATAAA+TGG - chr2_2:1723179-1723198 Msa0229940:intron 30.0%
ATCAAACAGATTCAGCATCA+AGG + chr2_2:1716855-1716874 None:intergenic 35.0%
AATGAAACATCAAGCTTCGT+CGG + chr2_2:1717020-1717039 None:intergenic 35.0%
!!! TTTTGCGTTGTTTTTGGGTT+AGG - chr2_2:1717038-1717057 Msa0229940:three_prime_UTR 35.0%
!!! TTTGCGTTGTTTTTGGGTTA+GGG - chr2_2:1717039-1717058 Msa0229940:three_prime_UTR 35.0%
!!! TTTTTTTGGAGGGGATAGAT+AGG - chr2_2:1717134-1717153 Msa0229940:three_prime_UTR 35.0%
! CTAAAATGTAGGTGATTTGG+AGG - chr2_2:1717186-1717205 Msa0229940:exon 35.0%
!! TGCATTTGAGTTGTACTTAC+CGG + chr2_2:1717333-1717352 None:intergenic 35.0%
TGCCAGGATATTTGATATAC+TGG - chr2_2:1717355-1717374 Msa0229940:CDS 35.0%
GCCAGGATATTTGATATACT+GGG - chr2_2:1717356-1717375 Msa0229940:CDS 35.0%
CCAGGATATTTGATATACTG+GGG - chr2_2:1717357-1717376 Msa0229940:CDS 35.0%
TGATAACATAGGGTTCAAGT+GGG + chr2_2:1717478-1717497 None:intergenic 35.0%
TTGTCTCTTGTAAATAGGAC+CGG + chr2_2:1717533-1717552 None:intergenic 35.0%
CTTTCTCTTGTAAATAGGAC+CGG - chr2_2:1717642-1717661 Msa0229940:CDS 35.0%
GAATTAAAAGATACTCCCTC+CGG + chr2_2:1717664-1717683 None:intergenic 35.0%
ACTTGCGATCTTAACAACAT+TGG - chr2_2:1717870-1717889 Msa0229940:CDS 35.0%
CTTGCGATCTTAACAACATT+GGG - chr2_2:1717871-1717890 Msa0229940:CDS 35.0%
ATGAGTACCATCAGAAACTT+CGG + chr2_2:1718008-1718027 None:intergenic 35.0%
TGATGGTACTCATAGTTATG+TGG - chr2_2:1718015-1718034 Msa0229940:CDS 35.0%
TGCAATGTTATCCATTCACT+TGG + chr2_2:1718050-1718069 None:intergenic 35.0%
CAGATCTATTAGTGGTATTG+AGG - chr2_2:1718175-1718194 Msa0229940:CDS 35.0%
TTTAACAATATGCGGTGACA+AGG - chr2_2:1718294-1718313 Msa0229940:CDS 35.0%
TGTTGCATTTGCACAATGAT+AGG - chr2_2:1718385-1718404 Msa0229940:CDS 35.0%
TGCACAATGATAGGTAGAAA+TGG - chr2_2:1718394-1718413 Msa0229940:CDS 35.0%
CAATGATAGGTAGAAATGGA+AGG - chr2_2:1718398-1718417 Msa0229940:CDS 35.0%
!!! ATAGGCTTTTAAGACATGAC+AGG + chr2_2:1718526-1718545 None:intergenic 35.0%
AAAAAAACATAGAGGCTGAG+TGG - chr2_2:1718771-1718790 Msa0229940:CDS 35.0%
!! TTGCTTTTAGTTGGCATAGA+TGG - chr2_2:1718836-1718855 Msa0229940:CDS 35.0%
GTTTACCATAGGTTGTATGA+TGG - chr2_2:1718913-1718932 Msa0229940:CDS 35.0%
GTTAACCATCATACAACCTA+TGG + chr2_2:1718921-1718940 None:intergenic 35.0%
TGTATGATGGTTAACAATCC+AGG - chr2_2:1718926-1718945 Msa0229940:CDS 35.0%
GTATGATGGTTAACAATCCA+GGG - chr2_2:1718927-1718946 Msa0229940:CDS 35.0%
AAATACTGTCTGCTCTGTTA+GGG - chr2_2:1718954-1718973 Msa0229940:CDS 35.0%
TCTTAACAGTGATAAACAGG+GGG + chr2_2:1719017-1719036 None:intergenic 35.0%
GTCTTAACAGTGATAAACAG+GGG + chr2_2:1719018-1719037 None:intergenic 35.0%
GTGTCTTAACAGTGATAAAC+AGG + chr2_2:1719020-1719039 None:intergenic 35.0%
TTTATCACTGTTAAGACACC+TGG - chr2_2:1719021-1719040 Msa0229940:CDS 35.0%
! TAGCTTTTAGTGGTGAAAAC+AGG - chr2_2:1719451-1719470 Msa0229940:intron 35.0%
! AGCTTTTAGTGGTGAAAACA+GGG - chr2_2:1719452-1719471 Msa0229940:intron 35.0%
TGGTGAAAACAGGGATAATT+TGG - chr2_2:1719461-1719480 Msa0229940:intron 35.0%
GGTGAAAACAGGGATAATTT+GGG - chr2_2:1719462-1719481 Msa0229940:intron 35.0%
GTGAAAACAGGGATAATTTG+GGG - chr2_2:1719463-1719482 Msa0229940:intron 35.0%
TGAAAACAGGGATAATTTGG+GGG - chr2_2:1719464-1719483 Msa0229940:intron 35.0%
! GTTTTCACTTCTACCAAACA+TGG + chr2_2:1719570-1719589 None:intergenic 35.0%
TGTTTGGTAGAAGTGAAAAC+AGG - chr2_2:1719570-1719589 Msa0229940:intron 35.0%
GTTTGGTAGAAGTGAAAACA+GGG - chr2_2:1719571-1719590 Msa0229940:intron 35.0%
AGTGAAAACAGGGATTAATC+TGG - chr2_2:1719581-1719600 Msa0229940:intron 35.0%
GTGAAAACAGGGATTAATCT+GGG - chr2_2:1719582-1719601 Msa0229940:intron 35.0%
TTTCGTAGAAAACGAAATCC+AGG - chr2_2:1719656-1719675 Msa0229940:intron 35.0%
TTCTTCAGTTCTCCTTATCT+TGG - chr2_2:1719689-1719708 Msa0229940:intron 35.0%
ACATGATATGCAGACATTTG+GGG + chr2_2:1719755-1719774 None:intergenic 35.0%
!!! GTTTTTTCAGTACCAGAGAA+AGG + chr2_2:1719835-1719854 None:intergenic 35.0%
GCTTGTAAGTACTAGAGTAA+AGG - chr2_2:1719944-1719963 Msa0229940:intron 35.0%
ATCAGAGTTGTGTCCTTATA+GGG + chr2_2:1719987-1720006 None:intergenic 35.0%
TATTAAATCTGGGCATGCAA+AGG - chr2_2:1720248-1720267 Msa0229940:intron 35.0%
GAGCTTAAGCAGAAATTTCA+AGG - chr2_2:1720343-1720362 Msa0229940:intron 35.0%
!! ATTTGATGTGCCATTTGAGT+TGG - chr2_2:1720834-1720853 Msa0229940:intron 35.0%
TGAAGTTCAACCAACTCAAA+TGG + chr2_2:1720847-1720866 None:intergenic 35.0%
TGCTAACATGAAGTTCTATC+AGG - chr2_2:1721071-1721090 Msa0229940:intron 35.0%
AAAATGCTATCGCTAATGGA+AGG - chr2_2:1721097-1721116 Msa0229940:intron 35.0%
AGAAGAACAAATACTGTGCT+AGG + chr2_2:1721345-1721364 None:intergenic 35.0%
! CTTCTAGTTGATTCTCAGTA+CGG - chr2_2:1721360-1721379 Msa0229940:intron 35.0%
! TTCTAGTTGATTCTCAGTAC+GGG - chr2_2:1721361-1721380 Msa0229940:intron 35.0%
CACTGTATTATGCAATATGC+CGG - chr2_2:1721573-1721592 Msa0229940:intron 35.0%
! AAATCTTCAACAGAGTGCTT+GGG + chr2_2:1721603-1721622 None:intergenic 35.0%
! TAAATCTTCAACAGAGTGCT+TGG + chr2_2:1721604-1721623 None:intergenic 35.0%
TTGAAGACGTGAACTATGAT+CGG + chr2_2:1721631-1721650 None:intergenic 35.0%
TTCAAACAAGAAGAATCGAG+AGG - chr2_2:1721646-1721665 Msa0229940:intron 35.0%
AGTTCAGGATGATTATGTCA+AGG - chr2_2:1721749-1721768 Msa0229940:intron 35.0%
!! TTCTAACTTCATTGACTCCT+TGG + chr2_2:1721781-1721800 None:intergenic 35.0%
GAGTCAATGAAGTTAGAAGA+AGG - chr2_2:1721783-1721802 Msa0229940:intron 35.0%
TAGAAGAAGGGTCTATGTTA+TGG - chr2_2:1721796-1721815 Msa0229940:intron 35.0%
ATAGAAACAGATCTGTTCCT+GGG + chr2_2:1721914-1721933 None:intergenic 35.0%
TATAGAAACAGATCTGTTCC+TGG + chr2_2:1721915-1721934 None:intergenic 35.0%
AAATTCATATCTTCCCAAGC+TGG + chr2_2:1721966-1721985 None:intergenic 35.0%
CTTCCAAAGGCAATTAATTG+AGG + chr2_2:1722062-1722081 None:intergenic 35.0%
CTCAATTAATTGCCTTTGGA+AGG - chr2_2:1722060-1722079 Msa0229940:intron 35.0%
CTCTATCTTCAAGAATAGCA+TGG + chr2_2:1722373-1722392 None:intergenic 35.0%
GAGAAATGAAGATTCATAGC+AGG + chr2_2:1722401-1722420 None:intergenic 35.0%
! ATGCTTTATTATTCATGCGG+TGG - chr2_2:1722485-1722504 Msa0229940:intron 35.0%
AGATTAATTCAGCAGAAGCT+TGG - chr2_2:1722572-1722591 Msa0229940:intron 35.0%
ATTATGTCGACAGTCTATGT+GGG - chr2_2:1722627-1722646 Msa0229940:intron 35.0%
CAGCCATATGTCATAGTTTA+TGG + chr2_2:1722663-1722682 None:intergenic 35.0%
TCATGAAGATGATCATGGAA+AGG - chr2_2:1722703-1722722 Msa0229940:intron 35.0%
! CATTGCAGTGATTGGATTTT+TGG - chr2_2:1722803-1722822 Msa0229940:intron 35.0%
TTTGGGCGGTGAATAAAATA+TGG - chr2_2:1722821-1722840 Msa0229940:intron 35.0%
CATGCGTTTGTATTCATTGA+AGG - chr2_2:1722870-1722889 Msa0229940:intron 35.0%
! GTATTCATTGAAGGATTGGT+TGG - chr2_2:1722879-1722898 Msa0229940:intron 35.0%
! TGGTTGGTGTATTTCATCAA+AGG - chr2_2:1722895-1722914 Msa0229940:intron 35.0%
GAGCATATCATAATTGCCAT+TGG - chr2_2:1722917-1722936 Msa0229940:intron 35.0%
! ACTCTATTGGTGACATCTTT+CGG - chr2_2:1722977-1722996 Msa0229940:intron 35.0%
! TAGTCAGTTCCTTCATTTTG+AGG - chr2_2:1723015-1723034 Msa0229940:intron 35.0%
ACTCGTCAAGAACAATGAAA+TGG + chr2_2:1723072-1723091 None:intergenic 35.0%
TGCAGTGTGTACCATTTATA+TGG + chr2_2:1723193-1723212 None:intergenic 35.0%
CTTCGTCGGCACAATAAAAA+AGG + chr2_2:1717006-1717025 None:intergenic 40.0%
!!! TTGCGTTGTTTTTGGGTTAG+GGG - chr2_2:1717040-1717059 Msa0229940:three_prime_UTR 40.0%
CCCCAGTATATCAAATATCC+TGG + chr2_2:1717360-1717379 None:intergenic 40.0%
GTGATAACATAGGGTTCAAG+TGG + chr2_2:1717479-1717498 None:intergenic 40.0%
ACGGCTACTGTGATAACATA+GGG + chr2_2:1717488-1717507 None:intergenic 40.0%
! CCGGAGGGAGTATATATTAA+GGG + chr2_2:1717514-1717533 None:intergenic 40.0%
CCCTTAATATATACTCCCTC+CGG - chr2_2:1717511-1717530 Msa0229940:CDS 40.0%
! ACCGGAGGGAGTATATATTA+AGG + chr2_2:1717515-1717534 None:intergenic 40.0%
TGAGTACCATCAGAAACTTC+GGG + chr2_2:1718007-1718026 None:intergenic 40.0%
! GGCTTTTATGTCCAAGTGAA+TGG - chr2_2:1718036-1718055 Msa0229940:CDS 40.0%
GCATGATTCTTCCCTCAAAA+CGG - chr2_2:1718067-1718086 Msa0229940:CDS 40.0%
! GTGTTGTTAATCGTGTATCG+CGG - chr2_2:1718119-1718138 Msa0229940:CDS 40.0%
TCTCCAGGGGATAAATGTAT+TGG - chr2_2:1718464-1718483 Msa0229940:CDS 40.0%
ACACCAATACATTTATCCCC+TGG + chr2_2:1718470-1718489 None:intergenic 40.0%
GCAGACTCAGCATTAAATTC+AGG + chr2_2:1718806-1718825 None:intergenic 40.0%
AGGTGCAAGAAGTTTACCAT+AGG - chr2_2:1718902-1718921 Msa0229940:CDS 40.0%
CAAATACTGTCTGCTCTGTT+AGG - chr2_2:1718953-1718972 Msa0229940:CDS 40.0%
CTTAACAGTGATAAACAGGG+GGG + chr2_2:1719016-1719035 None:intergenic 40.0%
!! GACTTGAACTTGCTGATTGA+TGG - chr2_2:1719053-1719072 Msa0229940:CDS 40.0%
TAGACACACACATGCACAAA+GGG + chr2_2:1719335-1719354 None:intergenic 40.0%
ATAGACACACACATGCACAA+AGG + chr2_2:1719336-1719355 None:intergenic 40.0%
ACTTCTACCAAACATGGCAA+CGG + chr2_2:1719564-1719583 None:intergenic 40.0%
GGTCATACATTCTTCACTAG+TGG + chr2_2:1719906-1719925 None:intergenic 40.0%
AGCATGTGCAAGTGTGTTAA+GGG + chr2_2:1719927-1719946 None:intergenic 40.0%
AAGCATGTGCAAGTGTGTTA+AGG + chr2_2:1719928-1719947 None:intergenic 40.0%
GATCAGAGTTGTGTCCTTAT+AGG + chr2_2:1719988-1720007 None:intergenic 40.0%
ATTTACCAGCAAAGAAGGGA+AGG - chr2_2:1720286-1720305 Msa0229940:intron 40.0%
TTTACCAGCAAAGAAGGGAA+GGG - chr2_2:1720287-1720306 Msa0229940:intron 40.0%
ATCAAACATGGTGCATCCTA+GGG + chr2_2:1720382-1720401 None:intergenic 40.0%
! GTAGAAGCATGAACAGCATT+AGG + chr2_2:1720922-1720941 None:intergenic 40.0%
TACAAACAAGCCGCAGAAAA+AGG + chr2_2:1721048-1721067 None:intergenic 40.0%
GCTGAAAATGCTATCGCTAA+TGG - chr2_2:1721093-1721112 Msa0229940:intron 40.0%
TAGACATCCTCATGGGAAAT+GGG - chr2_2:1721161-1721180 Msa0229940:intron 40.0%
! CTTCTAAGAACCGATATCAG+AGG - chr2_2:1721204-1721223 Msa0229940:intron 40.0%
AACAGCTAGACCTCTGATAT+CGG + chr2_2:1721217-1721236 None:intergenic 40.0%
TCTCCTAGAACTGGTAAAGA+AGG + chr2_2:1721255-1721274 None:intergenic 40.0%
AATAGAGCTTCTCCTAGAAC+TGG + chr2_2:1721264-1721283 None:intergenic 40.0%
CTATTCGAATGTTGTTGGCA+AGG - chr2_2:1721289-1721308 Msa0229940:intron 40.0%
GAGTAGACTGAGTTTCTTTC+CGG - chr2_2:1721317-1721336 Msa0229940:intron 40.0%
ACAAATACTGTGCTAGGATC+CGG + chr2_2:1721339-1721358 None:intergenic 40.0%
! TCTAGTTGATTCTCAGTACG+GGG - chr2_2:1721362-1721381 Msa0229940:intron 40.0%
! TTTATGAATGTGCTGCTGAG+TGG - chr2_2:1721439-1721458 Msa0229940:intron 40.0%
! TTATGAATGTGCTGCTGAGT+GGG - chr2_2:1721440-1721459 Msa0229940:intron 40.0%
ACAAACTTGGGAATGCAAAC+TGG - chr2_2:1721511-1721530 Msa0229940:intron 40.0%
CAAACTTGGGAATGCAAACT+GGG - chr2_2:1721512-1721531 Msa0229940:intron 40.0%
AAACTTGGGAATGCAAACTG+GGG - chr2_2:1721513-1721532 Msa0229940:intron 40.0%
AATGCAAACTGGGGAGATAT+TGG - chr2_2:1721522-1721541 Msa0229940:intron 40.0%
ATGCAAACTGGGGAGATATT+GGG - chr2_2:1721523-1721542 Msa0229940:intron 40.0%
! TACGCTGCTGGTATTGAAAT+GGG + chr2_2:1721707-1721726 None:intergenic 40.0%
ATCCTGAACTTCGACAATCT+CGG + chr2_2:1721739-1721758 None:intergenic 40.0%
! TTATGTCAAGGTCGATTCCA+AGG - chr2_2:1721761-1721780 Msa0229940:intron 40.0%
GAGGATTCAGATGGACAAAA+GGG - chr2_2:1721822-1721841 Msa0229940:intron 40.0%
ATTTATGGTATCAGGTCCAG+AGG - chr2_2:1721982-1722001 Msa0229940:intron 40.0%
CTGCCTCAATTAATTGCCTT+TGG - chr2_2:1722056-1722075 Msa0229940:intron 40.0%
ATTGGACTGATCACAAGAAC+AGG + chr2_2:1722155-1722174 None:intergenic 40.0%
GTTCTTGTGATCAGTCCAAT+TGG - chr2_2:1722155-1722174 Msa0229940:intron 40.0%
TCTGCAACTGTTTCACCAAT+TGG + chr2_2:1722173-1722192 None:intergenic 40.0%
TGGTGAAACAGTTGCAGAAA+TGG - chr2_2:1722175-1722194 Msa0229940:intron 40.0%
AACAGTTGCAGAAATGGTAG+AGG - chr2_2:1722181-1722200 Msa0229940:intron 40.0%
TAGCGTCATCTGAACCAAAT+CGG + chr2_2:1722211-1722230 None:intergenic 40.0%
!! AGAGTGCTGATAAGCAATCA+TGG + chr2_2:1722244-1722263 None:intergenic 40.0%
CCTTCTACTGAATCTAGATC+AGG + chr2_2:1722518-1722537 None:intergenic 40.0%
CCTGATCTAGATTCAGTAGA+AGG - chr2_2:1722515-1722534 Msa0229940:intron 40.0%
TACAATGGAGAGAGACATCT+TGG - chr2_2:1722543-1722562 Msa0229940:intron 40.0%
GATTATGTCGACAGTCTATG+TGG - chr2_2:1722626-1722645 Msa0229940:intron 40.0%
ACTATGACATATGGCTGAGA+AGG - chr2_2:1722666-1722685 Msa0229940:intron 40.0%
ACATGCTAGGATTTCCAACT+GGG - chr2_2:1722737-1722756 Msa0229940:intron 40.0%
CTGCAATGAGAAACACGTTA+AGG + chr2_2:1722791-1722810 None:intergenic 40.0%
GTGTTTCTCATTGCAGTGAT+TGG - chr2_2:1722795-1722814 Msa0229940:intron 40.0%
ATCATAATTGCCATTGGTGC+AGG - chr2_2:1722923-1722942 Msa0229940:intron 40.0%
ATGTCACCAATAGAGTCTCA+AGG + chr2_2:1722973-1722992 None:intergenic 40.0%
ATAAATGGTACACACTGCAC+AGG - chr2_2:1723194-1723213 Msa0229940:intron 40.0%
!!! TGCGTTGTTTTTGGGTTAGG+GGG - chr2_2:1717041-1717060 Msa0229940:three_prime_UTR 45.0%
TTAGGGGGAAATGCAAGACA+TGG - chr2_2:1717056-1717075 Msa0229940:three_prime_UTR 45.0%
TAGGGGGAAATGCAAGACAT+GGG - chr2_2:1717057-1717076 Msa0229940:three_prime_UTR 45.0%
! TGATTAGCTCTTCTCCTGAC+CGG - chr2_2:1717311-1717330 Msa0229940:CDS 45.0%
! TTGAGTTGTACTTACCGGTC+AGG + chr2_2:1717328-1717347 None:intergenic 45.0%
TCACACACGTTGAGAATTGC+AGG + chr2_2:1717397-1717416 None:intergenic 45.0%
! TCTGGTTCAAAACAGCCTAG+TGG + chr2_2:1717426-1717445 None:intergenic 45.0%
ACATAGGGTTCAAGTGGGAT+GGG + chr2_2:1717473-1717492 None:intergenic 45.0%
AACATAGGGTTCAAGTGGGA+TGG + chr2_2:1717474-1717493 None:intergenic 45.0%
CACGGCTACTGTGATAACAT+AGG + chr2_2:1717489-1717508 None:intergenic 45.0%
CTCTTGTAAATAGGACCGGA+GGG + chr2_2:1717646-1717665 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG + chr2_2:1717645-1717664 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr2_2:1717645-1717664 Msa0229940:CDS 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr2_2:1717646-1717665 Msa0229940:CDS 45.0%
CAAAACTGCACGAATTGCAG+AGG + chr2_2:1717686-1717705 None:intergenic 45.0%
! CTCTGCAATTCGTGCAGTTT+TGG - chr2_2:1717684-1717703 Msa0229940:CDS 45.0%
ATTGCCAACTGGATGAAGGA+GGG + chr2_2:1717747-1717766 None:intergenic 45.0%
AATTGCCAACTGGATGAAGG+AGG + chr2_2:1717748-1717767 None:intergenic 45.0%
TCCTTCATCCAGTTGGCAAT+TGG - chr2_2:1717747-1717766 Msa0229940:CDS 45.0%
TCGATCTCAGTGATCATCCA+AGG - chr2_2:1717808-1717827 Msa0229940:CDS 45.0%
CGATCTCAGTGATCATCCAA+GGG - chr2_2:1717809-1717828 Msa0229940:CDS 45.0%
GATCTCAGTGATCATCCAAG+GGG - chr2_2:1717810-1717829 Msa0229940:CDS 45.0%
CTTATGATCTTGCTACCCCT+TGG + chr2_2:1717828-1717847 None:intergenic 45.0%
AGTTAGCCCGAAGTTTCTGA+TGG - chr2_2:1717998-1718017 Msa0229940:CDS 45.0%
GTTCAAGTCGTATGCTAACC+AGG + chr2_2:1719042-1719061 None:intergenic 45.0%
CACATGCACAAAGGGATGAA+AGG + chr2_2:1719327-1719346 None:intergenic 45.0%
AACAGGGATAATTTGGGGGT+CGG - chr2_2:1719468-1719487 Msa0229940:intron 45.0%
! TTTAGCTCCGTTGCCATGTT+TGG - chr2_2:1719554-1719573 Msa0229940:intron 45.0%
CAAGACCAGTCTCGTAGAAA+CGG + chr2_2:1720119-1720138 None:intergenic 45.0%
TTACCAGCAAAGAAGGGAAG+GGG - chr2_2:1720288-1720307 Msa0229940:intron 45.0%
TGCTGTGCGGAGTTAATATG+TGG - chr2_2:1720311-1720330 Msa0229940:intron 45.0%
GATCAAACATGGTGCATCCT+AGG + chr2_2:1720383-1720402 None:intergenic 45.0%
CTGGGGATCTACCTACAAAT+AGG + chr2_2:1720645-1720664 None:intergenic 45.0%
! ACCCAATTGATTCCTGGTCT+GGG + chr2_2:1720663-1720682 None:intergenic 45.0%
ACCAGGAATCAATTGGGTCT+GGG - chr2_2:1720665-1720684 Msa0229940:intron 45.0%
ATGCTGGTATTAAGGGCTTG+TGG - chr2_2:1720992-1721011 Msa0229940:intron 45.0%
TGCTGGTATTAAGGGCTTGT+GGG - chr2_2:1720993-1721012 Msa0229940:intron 45.0%
! TGAGCCTATGCCTTTTTCTG+CGG - chr2_2:1721035-1721054 Msa0229940:intron 45.0%
CTAGACATCCTCATGGGAAA+TGG - chr2_2:1721160-1721179 Msa0229940:intron 45.0%
AGATGATCCCATTTCCCATG+AGG + chr2_2:1721171-1721190 None:intergenic 45.0%
GATATCAGAGGTCTAGCTGT+TGG - chr2_2:1721216-1721235 Msa0229940:intron 45.0%
CTAGAACTGGTAAAGAAGGC+TGG + chr2_2:1721251-1721270 None:intergenic 45.0%
CAGCCTTCTTTACCAGTTCT+AGG - chr2_2:1721249-1721268 Msa0229940:intron 45.0%
! CTAGTTGATTCTCAGTACGG+GGG - chr2_2:1721363-1721382 Msa0229940:intron 45.0%
GGGGGAGTTGTAAAAGTTGA+AGG - chr2_2:1721381-1721400 Msa0229940:intron 45.0%
TGCAAACTGGGGAGATATTG+GGG - chr2_2:1721524-1721543 Msa0229940:intron 45.0%
AGAAGAATCGAGAGGCAGTT+AGG - chr2_2:1721654-1721673 Msa0229940:intron 45.0%
ACCACCAGAGTGAATGGAAA+TGG - chr2_2:1721681-1721700 Msa0229940:intron 45.0%
! CTACGCTGCTGGTATTGAAA+TGG + chr2_2:1721708-1721727 None:intergenic 45.0%
TCCTGAACTTCGACAATCTC+GGG + chr2_2:1721738-1721757 None:intergenic 45.0%
AGAAGGGTCTATGTTATGGC+TGG - chr2_2:1721800-1721819 Msa0229940:intron 45.0%
TTATGGCTGGAGGATTCAGA+TGG - chr2_2:1721813-1721832 Msa0229940:intron 45.0%
GGAGGATTCAGATGGACAAA+AGG - chr2_2:1721821-1721840 Msa0229940:intron 45.0%
GCATCTTATGTTGAAGACCC+AGG - chr2_2:1721894-1721913 Msa0229940:intron 45.0%
TCAATACTTTGGTCTGCCTC+TGG + chr2_2:1722001-1722020 None:intergenic 45.0%
TCACAATTTCCACCAGAGCT+GGG + chr2_2:1722113-1722132 None:intergenic 45.0%
AGCACTCTCAACTGCTACAT+CGG - chr2_2:1722256-1722275 Msa0229940:intron 45.0%
CTAACACAGATCACGTTCTC+TGG + chr2_2:1722308-1722327 None:intergenic 45.0%
CAGAGAACGTGATCTGTGTT+AGG - chr2_2:1722306-1722325 Msa0229940:intron 45.0%
AACGTGATCTGTGTTAGGTC+TGG - chr2_2:1722311-1722330 Msa0229940:intron 45.0%
CTCATCTACTTACGCACTTC+AGG - chr2_2:1722418-1722437 Msa0229940:intron 45.0%
TCTACTTACGCACTTCAGGA+AGG - chr2_2:1722422-1722441 Msa0229940:intron 45.0%
TAGGCTTTCTGCATCAGATG+CGG + chr2_2:1722459-1722478 None:intergenic 45.0%
AGCAAAAGCTTTCAGCACAG+TGG + chr2_2:1722606-1722625 None:intergenic 45.0%
ACATATGGCTGAGAAGGTTG+AGG - chr2_2:1722672-1722691 Msa0229940:intron 45.0%
GGAAATTGACAGCACATGCT+AGG - chr2_2:1722724-1722743 Msa0229940:intron 45.0%
CACATGCTAGGATTTCCAAC+TGG - chr2_2:1722736-1722755 Msa0229940:intron 45.0%
TTTCAGGAATTGGACCCAGT+TGG + chr2_2:1722754-1722773 None:intergenic 45.0%
!! GCAGTGATTGGATTTTTGGG+CGG - chr2_2:1722807-1722826 Msa0229940:intron 45.0%
TAATTGCCATTGGTGCAGGT+TGG - chr2_2:1722927-1722946 Msa0229940:intron 45.0%
GTCTTGGCTCCTCAAAATGA+AGG + chr2_2:1723027-1723046 None:intergenic 45.0%
CTGCAACTGCATGAATCTCA+GGG + chr2_2:1723161-1723180 None:intergenic 45.0%
CTGAGATTCATGCAGTTGCA+GGG - chr2_2:1723160-1723179 Msa0229940:intron 45.0%
!!! TGTTTTTTTTTTTTTTTTTT+TGG - chr2_2:1717120-1717139 Msa0229940:three_prime_UTR 5.0%
!!! AATAAATTTTAAACAATAAT+CGG - chr2_2:1718875-1718894 Msa0229940:CDS 5.0%
!! CAATTATAAATTTATAATAA+AGG + chr2_2:1719516-1719535 None:intergenic 5.0%
AGGGGGAAATGCAAGACATG+GGG - chr2_2:1717058-1717077 Msa0229940:three_prime_UTR 50.0%
GGAAATGCAAGACATGGGGA+GGG - chr2_2:1717062-1717081 Msa0229940:three_prime_UTR 50.0%
ACAACTCAAATGCAGCTGCC+AGG - chr2_2:1717339-1717358 Msa0229940:CDS 50.0%
ATTTGATATACTGGGGCGCG+CGG - chr2_2:1717364-1717383 Msa0229940:CDS 50.0%
CGTGTGTGAGTTTCACCACT+AGG - chr2_2:1717408-1717427 Msa0229940:CDS 50.0%
CATAGGGTTCAAGTGGGATG+GGG + chr2_2:1717472-1717491 None:intergenic 50.0%
ATACCCCTCCTTCATCCAGT+TGG - chr2_2:1717740-1717759 Msa0229940:CDS 50.0%
TTGCCAACTGGATGAAGGAG+GGG + chr2_2:1717746-1717765 None:intergenic 50.0%
GCCAATTGCCAACTGGATGA+AGG + chr2_2:1717751-1717770 None:intergenic 50.0%
GCAGACAGTATTTGACTCCC+TGG + chr2_2:1718947-1718966 None:intergenic 50.0%
! CTGGAGGCAGTAGCTTTTAG+TGG - chr2_2:1719441-1719460 Msa0229940:intron 50.0%
TCATGCACACACCCTTTCTC+TGG - chr2_2:1719820-1719839 Msa0229940:intron 50.0%
AGAGCAAAAGAGTAACCGCG+AGG - chr2_2:1720056-1720075 Msa0229940:intron 50.0%
GAGCAAAAGAGTAACCGCGA+GGG - chr2_2:1720057-1720076 Msa0229940:intron 50.0%
AGCAAAAGAGTAACCGCGAG+GGG - chr2_2:1720058-1720077 Msa0229940:intron 50.0%
CACATTCAGTAATCCCCTCG+CGG + chr2_2:1720074-1720093 None:intergenic 50.0%
TATGGCCGTTTCTACGAGAC+TGG - chr2_2:1720111-1720130 Msa0229940:intron 50.0%
!! CGTTTCTACGAGACTGGTCT+TGG - chr2_2:1720117-1720136 Msa0229940:intron 50.0%
TGGTGCATCCTAGGGAAGTT+GGG + chr2_2:1720374-1720393 None:intergenic 50.0%
ATGGTGCATCCTAGGGAAGT+TGG + chr2_2:1720375-1720394 None:intergenic 50.0%
TCCCCAGACCAGGAATCAAT+TGG - chr2_2:1720658-1720677 Msa0229940:intron 50.0%
! CCCAATTGATTCCTGGTCTG+GGG + chr2_2:1720662-1720681 None:intergenic 50.0%
CCCCAGACCAGGAATCAATT+GGG - chr2_2:1720659-1720678 Msa0229940:intron 50.0%
! GACCCAATTGATTCCTGGTC+TGG + chr2_2:1720664-1720683 None:intergenic 50.0%
GACCAGGAATCAATTGGGTC+TGG - chr2_2:1720664-1720683 Msa0229940:intron 50.0%
! TCCCAGACCCAATTGATTCC+TGG + chr2_2:1720669-1720688 None:intergenic 50.0%
! CAATTGGGTCTGGGACAAAG+AGG - chr2_2:1720674-1720693 Msa0229940:intron 50.0%
AAGAGGTCCAGTGTGTCATC+TGG - chr2_2:1720691-1720710 Msa0229940:intron 50.0%
TGTCATCTGGTGGTAGGTCT+CGG - chr2_2:1720704-1720723 Msa0229940:intron 50.0%
TGGTATTAAGGGCTTGTGGG+AGG - chr2_2:1720996-1721015 Msa0229940:intron 50.0%
! CAAGCCGCAGAAAAAGGCAT+AGG + chr2_2:1721042-1721061 None:intergenic 50.0%
GCTATCGCTAATGGAAGGCT+TGG - chr2_2:1721102-1721121 Msa0229940:intron 50.0%
ATCGCTAATGGAAGGCTTGG+AGG - chr2_2:1721105-1721124 Msa0229940:intron 50.0%
GAACTGGTAAAGAAGGCTGG+CGG + chr2_2:1721248-1721267 None:intergenic 50.0%
! AACAGAGTGCTTGGGCATTC+CGG + chr2_2:1721595-1721614 None:intergenic 50.0%
GGAGATACCACCAGAGTGAA+TGG - chr2_2:1721675-1721694 Msa0229940:intron 50.0%
GCCATTTCCATTCACTCTGG+TGG + chr2_2:1721685-1721704 None:intergenic 50.0%
TGGGCCATTTCCATTCACTC+TGG + chr2_2:1721688-1721707 None:intergenic 50.0%
CTGAACTTCGACAATCTCGG+GGG + chr2_2:1721736-1721755 None:intergenic 50.0%
CCTGAACTTCGACAATCTCG+GGG + chr2_2:1721737-1721756 None:intergenic 50.0%
AGGGTCTATGTTATGGCTGG+AGG - chr2_2:1721803-1721822 Msa0229940:intron 50.0%
AGGGTGTATGAGCCTTCCAA+AGG + chr2_2:1722075-1722094 None:intergenic 50.0%
TTTGGAAGGCTCATACACCC+TGG - chr2_2:1722074-1722093 Msa0229940:intron 50.0%
TACACCCTGGTCATTGTCGA+AGG - chr2_2:1722087-1722106 Msa0229940:intron 50.0%
GTCACAATTTCCACCAGAGC+TGG + chr2_2:1722114-1722133 None:intergenic 50.0%
GTGGAAATTGTGACCACCCT+TGG - chr2_2:1722120-1722139 Msa0229940:intron 50.0%
AATTGTGACCACCCTTGGTG+TGG - chr2_2:1722125-1722144 Msa0229940:intron 50.0%
! ATTGTGACCACCCTTGGTGT+GGG - chr2_2:1722126-1722145 Msa0229940:intron 50.0%
GTTGCAGAAATGGTAGAGGC+AGG - chr2_2:1722185-1722204 Msa0229940:intron 50.0%
TCTGTGTTAGGTCTGGTGTG+AGG - chr2_2:1722318-1722337 Msa0229940:intron 50.0%
!! CAGTAGAAGGAGCGCTACAA+TGG - chr2_2:1722528-1722547 Msa0229940:intron 50.0%
GGAGAGAGACATCTTGGTCA+AGG - chr2_2:1722549-1722568 Msa0229940:intron 50.0%
CCTGCAACTGCATGAATCTC+AGG + chr2_2:1723162-1723181 None:intergenic 50.0%
CCTGAGATTCATGCAGTTGC+AGG - chr2_2:1723159-1723178 Msa0229940:intron 50.0%
TCTCCCCTTCCCCTTCTTCA+CGG - chr2_2:1716956-1716975 Msa0229940:three_prime_UTR 55.0%
GGGAAATGCAAGACATGGGG+AGG - chr2_2:1717061-1717080 Msa0229940:three_prime_UTR 55.0%
TTTGATATACTGGGGCGCGC+GGG - chr2_2:1717365-1717384 Msa0229940:CDS 55.0%
CGAGCATGCCAATTGCCAAC+TGG + chr2_2:1717758-1717777 None:intergenic 55.0%
CAGATGCTTGTCACAGCGAC+AGG + chr2_2:1719079-1719098 None:intergenic 55.0%
TAAAGGACAAGCCAGGCCGA+TGG + chr2_2:1719499-1719518 None:intergenic 55.0%
AGGAGTCTCCCAACTTCCCT+AGG - chr2_2:1720363-1720382 Msa0229940:intron 55.0%
TGTAGGTAGATCCCCAGACC+AGG - chr2_2:1720648-1720667 Msa0229940:intron 55.0%
AGGTCCAGTGTGTCATCTGG+TGG - chr2_2:1720694-1720713 Msa0229940:intron 55.0%
CCTACCACCAGATGACACAC+TGG + chr2_2:1720701-1720720 None:intergenic 55.0%
CCAGTGTGTCATCTGGTGGT+AGG - chr2_2:1720698-1720717 Msa0229940:intron 55.0%
CTGGTGGTAGGTCTCGGAAT+CGG - chr2_2:1720710-1720729 Msa0229940:intron 55.0%
TGGTAGGTCTCGGAATCGGA+AGG - chr2_2:1720714-1720733 Msa0229940:intron 55.0%
!!! AGGGCTTGTGGGAGGCATTT+TGG - chr2_2:1721004-1721023 Msa0229940:intron 55.0%
GGAAGGCTTGGAGGTCTTTG+TGG - chr2_2:1721114-1721133 Msa0229940:intron 55.0%
CTTGGAGGTCTTTGTGGCAC+TGG - chr2_2:1721120-1721139 Msa0229940:intron 55.0%
GGGAGATATTGGGGCTCTAC+AGG - chr2_2:1721533-1721552 Msa0229940:intron 55.0%
CCCCGAGATTGTCGAAGTTC+AGG - chr2_2:1721734-1721753 Msa0229940:intron 55.0%
! TTCCCAAGCTGGTTCCAGCT+GGG + chr2_2:1721955-1721974 None:intergenic 55.0%
TGGGCCTTCGACAATGACCA+GGG + chr2_2:1722094-1722113 None:intergenic 55.0%
GAACAGGAGTCCCACACCAA+GGG + chr2_2:1722139-1722158 None:intergenic 55.0%
AGAACAGGAGTCCCACACCA+AGG + chr2_2:1722140-1722159 None:intergenic 55.0%
ATGGTAGAGGCAGGCCGATT+TGG - chr2_2:1722194-1722213 Msa0229940:intron 55.0%
CTCTCAACTGCTACATCGGC+TGG - chr2_2:1722260-1722279 Msa0229940:intron 55.0%
! CTGCTACATCGGCTGGACTA+CGG - chr2_2:1722267-1722286 Msa0229940:intron 55.0%
GACTACGGCATGGAGACATC+AGG - chr2_2:1722282-1722301 Msa0229940:intron 55.0%
AGCAGTCCAACCTGCACCAA+TGG + chr2_2:1722936-1722955 None:intergenic 55.0%
CTCCCCTTCCCCTTCTTCAC+GGG - chr2_2:1716957-1716976 Msa0229940:three_prime_UTR 60.0%
TCCCCTTCCCCTTCTTCACG+GGG - chr2_2:1716958-1716977 Msa0229940:three_prime_UTR 60.0%
ACCCCGTGAAGAAGGGGAAG+GGG + chr2_2:1716962-1716981 None:intergenic 60.0%
CACCCCGTGAAGAAGGGGAA+GGG + chr2_2:1716963-1716982 None:intergenic 60.0%
!! TTGGGGGTCGGAAGTGCCAT+CGG - chr2_2:1719480-1719499 Msa0229940:intron 60.0%
GCACCCCTTCCCTTCTTTGC+TGG + chr2_2:1720294-1720313 None:intergenic 60.0%
!! AGAAGGGAAGGGGTGCTGTG+CGG - chr2_2:1720298-1720317 Msa0229940:intron 60.0%
! CAAGCTGGTTCCAGCTGGGA+GGG + chr2_2:1721951-1721970 None:intergenic 60.0%
CTCCCAGCTGGAACCAGCTT+GGG - chr2_2:1721950-1721969 Msa0229940:intron 60.0%
! CTTCCCAAGCTGGTTCCAGC+TGG + chr2_2:1721956-1721975 None:intergenic 60.0%
CTGGGCCTTCGACAATGACC+AGG + chr2_2:1722095-1722114 None:intergenic 60.0%
CATTGTCGAAGGCCCAGCTC+TGG - chr2_2:1722098-1722117 Msa0229940:intron 60.0%
! ACATCGGCTGGACTACGGCA+TGG - chr2_2:1722272-1722291 Msa0229940:intron 60.0%
CCACCCCGTGAAGAAGGGGA+AGG + chr2_2:1716964-1716983 None:intergenic 65.0%
CCTTCCCCTTCTTCACGGGG+TGG - chr2_2:1716961-1716980 Msa0229940:three_prime_UTR 65.0%
TCCCCTTCTTCACGGGGTGG+AGG - chr2_2:1716964-1716983 Msa0229940:three_prime_UTR 65.0%
CCCTCCACCCCGTGAAGAAG+GGG + chr2_2:1716968-1716987 None:intergenic 65.0%
CCCCTTCTTCACGGGGTGGA+GGG - chr2_2:1716965-1716984 Msa0229940:three_prime_UTR 65.0%
GCCCTCCACCCCGTGAAGAA+GGG + chr2_2:1716969-1716988 None:intergenic 65.0%
AGCCCTCCACCCCGTGAAGA+AGG + chr2_2:1716970-1716989 None:intergenic 65.0%
CGGGGGAAACACTACGCTGC+TGG + chr2_2:1721719-1721738 None:intergenic 65.0%
! CCAAGCTGGTTCCAGCTGGG+AGG + chr2_2:1721952-1721971 None:intergenic 65.0%
CCTCCCAGCTGGAACCAGCT+TGG - chr2_2:1721949-1721968 Msa0229940:intron 65.0%
! TGTCGAAGGCCCAGCTCTGG+TGG - chr2_2:1722101-1722120 Msa0229940:intron 65.0%
CAGGAGTCCCACACCAAGGG+TGG + chr2_2:1722136-1722155 None:intergenic 65.0%
!! GGTCGGAAGTGCCATCGGCC+TGG - chr2_2:1719485-1719504 Msa0229940:intron 70.0%
GGGCTCTCATCCCTCCCAGC+TGG - chr2_2:1721938-1721957 Msa0229940:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 1716634 1723308 1716634 ID=Msa0229940;Name=Msa0229940
chr2_2 mRNA 1716634 1723308 1716634 ID=Msa0229940-mRNA-1;Parent=Msa0229940;Name=Msa0229940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|0|1|2|563|699
chr2_2 exon 1716634 1719289 1716634 ID=Msa0229940-mRNA-1:exon:635;Parent=Msa0229940-mRNA-1
chr2_2 exon 1723268 1723308 1723268 ID=Msa0229940-mRNA-1:exon:634;Parent=Msa0229940-mRNA-1
chr2_2 five_prime_UTR 1723275 1723308 1723275 ID=Msa0229940-mRNA-1:five_prime_utr;Parent=Msa0229940-mRNA-1
chr2_2 CDS 1723268 1723274 1723268 ID=Msa0229940-mRNA-1:cds;Parent=Msa0229940-mRNA-1
chr2_2 CDS 1717197 1719289 1717197 ID=Msa0229940-mRNA-1:cds;Parent=Msa0229940-mRNA-1
chr2_2 three_prime_UTR 1716634 1717196 1716634 ID=Msa0229940-mRNA-1:three_prime_utr;Parent=Msa0229940-mRNA-1
Gene Sequence

>Msa0229940

ATGCAAGGTAGATCCCCAGACCAGGAATCAATTGGGTCTGGGACAAAGAGGTCCAGTGTGTCATCTGGTGGTAGGTCTCGGAATCGGAAGGAGTTCTTCTATAAATTTGTTGATAGTGACGGTCTGAATGAAAAACTTGTAGATTGGTTTGAATCTGTAACAGAAAAATATACATTGAAACAGCAAGCATTTGATGTGCCATTTGAGTTGGTTGAACTTCAAAAATTTGATTATGCATTAGAGGGGATTTCATTTCAGCAGCTCACACGCATGCCTAATGCTGTTCATGCTTCTACATCTGAAGCTGTAGAAGCAACAGCTTGTCTTGCTATTGAAGATTTTCTACATGCTGGTATTAAGGGCTTGTGGGAGGCATTTTGGAGTCAAGATGAGCCTATGCCTTTTTCTGCGGCTTGTTTGTATAATGCTAACATGAAGTTCTATCAGGCTGAAAATGCTATCGCTAATGGAAGGCTTGGAGGTCTTTGTGGCACTGGTATATTGCTTAATAATTCTAGACATCCTCATGGGAAATGGGATCATCTCCTTGAATTAACGCTTCTAAGAACCGATATCAGAGGTCTAGCTGTTGGCAGTGACCGCCAGCCTTCTTTACCAGTTCTAGGAGAAGCTCTATTTTATGCTATTCGAATGTTGTTGGCAAGGAGTTTGAGTAGACTGAGTTTCTTTCCGGATCCTAGCACAGTATTTGTTCTTCTAGTTGATTCTCAGTACGGGGGAGTTGTAAAAGTTGAAGGAGATGTAAGTAAGCTCAATTTTGATGTGAATAATGTTTATGAATGTGCTGCTGAGTGGGTACAAAATCATTCTAGAATTTCTGTTTCTCCAATTTATAGAATCTGGAACAAACTTGGGAATGCAAACTGGGGAGATATTGGGGCTCTACAGGTTTTATTTGCAACCTTTCACTGTATTATGCAATATGCCGGAATGCCCAAGCACTCTGTTGAAGATTTAGCTGCCGATCATAGTTCACGTCTTCAAACAAGAAGAATCGAGAGGCAGTTAGGAGATACCACCAGAGTGAATGGAAATGGCCCATTTCAATACCAGCAGCGTAGTGTTTCCCCCGAGATTGTCGAAGTTCAGGATGATTATGTCAAGGTCGATTCCAAGGAGTCAATGAAGTTAGAAGAAGGGTCTATGTTATGGCTGGAGGATTCAGATGGACAAAAGGGTTATCAAATACAAGAAGTAATCAAAACTGGTGAATTGACATACTACATTGCATCTTATGTTGAAGACCCAGGAACAGATCTGTTTCTATATGTGGGCTCTCATCCCTCCCAGCTGGAACCAGCTTGGGAAGATATGAATTTATGGTATCAGGTCCAGAGGCAGACCAAAGTATTGACAATAATGAAGCAGAAAGGTCTATCAAGCAAGTATCTGCCTCAATTAATTGCCTTTGGAAGGCTCATACACCCTGGTCATTGTCGAAGGCCCAGCTCTGGTGGAAATTGTGACCACCCTTGGTGTGGGACTCCTGTTCTTGTGATCAGTCCAATTGGTGAAACAGTTGCAGAAATGGTAGAGGCAGGCCGATTTGGTTCAGATGACGCTATCAAATGTTGCCATGATTGCTTATCAGCACTCTCAACTGCTACATCGGCTGGACTACGGCATGGAGACATCAGGCCAGAGAACGTGATCTGTGTTAGGTCTGGTGTGAGGCAACCTTATTTTGTTCTAATTGGGTGGGGCCATGCTATTCTTGAAGATAGAGATCGCCCTGCTATGAATCTTCATTTCTCATCTACTTACGCACTTCAGGAAGGAAAGCTATGTTCCGCATCTGATGCAGAAAGCCTAGTCTATATGCTTTATTATTCATGCGGTGGTGTATTACCTGATCTAGATTCAGTAGAAGGAGCGCTACAATGGAGAGAGACATCTTGGTCAAGGAGATTAATTCAGCAGAAGCTTGGTGATATTTCCACTGTGCTGAAAGCTTTTGCTGATTATGTCGACAGTCTATGTGGGACGCCATATCCCATAAACTATGACATATGGCTGAGAAGGTTGAGGCGAAATATTCATGAAGATGATCATGGAAAGGAAATTGACAGCACATGCTAG
Protein sequence

>Msa0229940

MQGRSPDQESIGSGTKRSSVSSGGRSRNRKEFFYKFVDSDGLNEKLVDWFESVTEKYTLKQQAFDVPFELVELQKFDYALEGISFQQLTRMPNAVHASTSEAVEATACLAIEDFLHAGIKGLWEAFWSQDEPMPFSAACLYNANMKFYQAENAIANGRLGGLCGTGILLNNSRHPHGKWDHLLELTLLRTDIRGLAVGSDRQPSLPVLGEALFYAIRMLLARSLSRLSFFPDPSTVFVLLVDSQYGGVVKVEGDVSKLNFDVNNVYECAAEWVQNHSRISVSPIYRIWNKLGNANWGDIGALQVLFATFHCIMQYAGMPKHSVEDLAADHSSRLQTRRIERQLGDTTRVNGNGPFQYQQRSVSPEIVEVQDDYVKVDSKESMKLEEGSMLWLEDSDGQKGYQIQEVIKTGELTYYIASYVEDPGTDLFLYVGSHPSQLEPAWEDMNLWYQVQRQTKVLTIMKQKGLSSKYLPQLIAFGRLIHPGHCRRPSSGGNCDHPWCGTPVLVISPIGETVAEMVEAGRFGSDDAIKCCHDCLSALSTATSAGLRHGDIRPENVICVRSGVRQPYFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYYSCGGVLPDLDSVEGALQWRETSWSRRLIQQKLGDISTVLKAFADYVDSLCGTPYPINYDIWLRRLRRNIHEDDHGKEIDSTC*