Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056060 | sp|Q6YXX9|GG2_ORYSJ | 40.625 | 96 | 55 | 1 | 29 | 124 | 49 | 142 | 1.68e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056060 | A0A072VNS6 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 1.44e-85 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa0056060 | 0.982690 | 9.584309e-156 | -8.615850e-47 |
| Msa0007510 | Msa0056060 | 0.912011 | 3.172692e-83 | -8.615850e-47 |
| Msa0015090 | Msa0056060 | 0.807110 | 5.931847e-50 | -8.615850e-47 |
| Msa0017320 | Msa0056060 | 0.802204 | 6.267270e-49 | -8.615850e-47 |
| Msa0049910 | Msa0056060 | 0.994430 | 3.431684e-207 | -8.615850e-47 |
| Msa0056060 | Msa0073870 | 0.828630 | 8.078888e-55 | -8.615850e-47 |
| Msa0056060 | Msa0118540 | 0.808055 | 3.738180e-50 | -8.615850e-47 |
| Msa0056060 | Msa0121840 | 0.834768 | 2.475777e-56 | -8.615850e-47 |
| Msa0056060 | Msa0130520 | 0.811995 | 5.295188e-51 | -8.615850e-47 |
| Msa0056060 | Msa0135410 | 0.802784 | 4.760460e-49 | -8.615850e-47 |
| Msa0056060 | Msa0138020 | 0.820780 | 5.723695e-53 | -8.615850e-47 |
| Msa0056060 | Msa0150230 | 0.801121 | 1.045655e-48 | -8.615850e-47 |
| Msa0056060 | Msa0152560 | 0.800961 | 1.127283e-48 | -8.615850e-47 |
| Msa0056060 | Msa0155340 | 0.802544 | 5.334768e-49 | -8.615850e-47 |
| Msa0056060 | Msa0166730 | 0.855775 | 5.029221e-62 | -8.615850e-47 |
| Msa0056060 | Msa0189030 | 0.815427 | 9.297544e-52 | -8.615850e-47 |
| Msa0056060 | Msa0244190 | 0.803302 | 3.720143e-49 | -8.615850e-47 |
| Msa0056060 | Msa0256330 | 0.803627 | 3.185720e-49 | -8.615850e-47 |
| Msa0056060 | Msa0257500 | 0.812764 | 3.597011e-51 | -8.615850e-47 |
| Msa0056060 | Msa0282720 | 0.807195 | 5.690970e-50 | -8.615850e-47 |
| Msa0056060 | Msa0295330 | 0.808081 | 3.690257e-50 | -8.615850e-47 |
| Msa0056060 | Msa0299660 | 0.827492 | 1.518103e-54 | -8.615850e-47 |
| Msa0056060 | Msa0309270 | 0.815598 | 8.515017e-52 | -8.615850e-47 |
| Msa0056060 | Msa0347750 | 0.815288 | 9.981047e-52 | -8.615850e-47 |
| Msa0056060 | Msa0394470 | 0.823786 | 1.148171e-53 | -8.615850e-47 |
| Msa0056060 | Msa0482180 | 0.817667 | 2.928421e-52 | -8.615850e-47 |
| Msa0056060 | Msa0485490 | 0.801194 | 1.010291e-48 | -8.615850e-47 |
| Msa0056060 | Msa0507610 | 0.805288 | 1.434935e-49 | -8.615850e-47 |
| Msa0056060 | Msa0518170 | 0.807810 | 4.213443e-50 | -8.615850e-47 |
| Msa0056060 | Msa0521740 | 0.804326 | 2.279436e-49 | -8.615850e-47 |
| Msa0056060 | Msa0545290 | 0.802600 | 5.194332e-49 | -8.615850e-47 |
| Msa0056060 | Msa0587030 | 0.803922 | 2.766582e-49 | -8.615850e-47 |
| Msa0056060 | Msa0600890 | 0.803521 | 3.350396e-49 | -8.615850e-47 |
| Msa0056060 | Msa0610130 | 0.800847 | 1.189410e-48 | -8.615850e-47 |
| Msa0056060 | Msa0643320 | 0.823222 | 1.556078e-53 | -8.615850e-47 |
| Msa0056060 | Msa0654620 | 0.820435 | 6.869642e-53 | -8.615850e-47 |
| Msa0056060 | Msa0667740 | 0.802603 | 5.187598e-49 | -8.615850e-47 |
| Msa0056060 | Msa0679810 | 0.801218 | 9.986873e-49 | -8.615850e-47 |
| Msa0056060 | Msa0683140 | 0.826552 | 2.547870e-54 | -8.615850e-47 |
| Msa0056060 | Msa0683600 | 0.827276 | 1.710348e-54 | -8.615850e-47 |
| Msa0056060 | Msa0689780 | 0.826691 | 2.361176e-54 | -8.615850e-47 |
| Msa0056060 | Msa0703910 | 0.805625 | 1.219409e-49 | -8.615850e-47 |
| Msa0056060 | Msa0711150 | 0.815836 | 7.539288e-52 | -8.615850e-47 |
| Msa0056060 | Msa0742150 | 0.806254 | 8.993311e-50 | -8.615850e-47 |
| Msa0056060 | Msa0750850 | 0.825687 | 4.091994e-54 | -8.615850e-47 |
| Msa0056060 | Msa0767370 | 0.802210 | 6.250798e-49 | -8.615850e-47 |
| Msa0056060 | Msa0775560 | 0.822192 | 2.702002e-53 | -8.615850e-47 |
| Msa0056060 | Msa0805920 | 0.817360 | 3.433142e-52 | -8.615850e-47 |
| Msa0056060 | Msa0812950 | 0.825436 | 4.692100e-54 | -8.615850e-47 |
| Msa0056060 | Msa0853440 | 0.822726 | 2.030819e-53 | -8.615850e-47 |
| Msa0056060 | Msa0861470 | 0.824202 | 9.170902e-54 | -8.615850e-47 |
| Msa0056060 | Msa0861570 | 0.817895 | 2.600414e-52 | -8.615850e-47 |
| Msa0056060 | Msa0876360 | 0.838515 | 2.747464e-57 | -8.615850e-47 |
| Msa0056060 | Msa0888260 | 0.809453 | 1.878010e-50 | -8.615850e-47 |
| Msa0056060 | Msa0894710 | 0.811196 | 7.901244e-51 | -8.615850e-47 |
| Msa0056060 | Msa0901320 | 0.829254 | 5.703947e-55 | -8.615850e-47 |
| Msa0056060 | Msa0904640 | 0.812904 | 3.353219e-51 | -8.615850e-47 |
| Msa0056060 | Msa0913080 | 0.806538 | 7.835008e-50 | -8.615850e-47 |
| Msa0056060 | Msa0921420 | 0.804977 | 1.667219e-49 | -8.615850e-47 |
| Msa0056060 | Msa0935770 | 0.807681 | 4.488168e-50 | -8.615850e-47 |
| Msa0056060 | Msa0950330 | 0.819697 | 1.013474e-52 | -8.615850e-47 |
| Msa0056060 | Msa0970480 | 0.819113 | 1.377313e-52 | -8.615850e-47 |
| Msa0056060 | Msa0978700 | 0.818696 | 1.713216e-52 | -8.615850e-47 |
| Msa0056060 | Msa0994370 | 0.806972 | 6.343266e-50 | -8.615850e-47 |
| Msa0056060 | Msa1023300 | 0.804550 | 2.047233e-49 | -8.615850e-47 |
| Msa0056060 | Msa1023310 | 0.813396 | 2.614059e-51 | -8.615850e-47 |
| Msa0056060 | Msa1025080 | 0.808559 | 2.918200e-50 | -8.615850e-47 |
| Msa0056060 | Msa1026410 | 0.803349 | 3.637794e-49 | -8.615850e-47 |
| Msa0056060 | Msa1026940 | 0.806351 | 8.582497e-50 | -8.615850e-47 |
| Msa0056060 | Msa1050410 | 0.814128 | 1.803627e-51 | -8.615850e-47 |
| Msa0056060 | Msa1062030 | 0.814544 | 1.459569e-51 | -8.615850e-47 |
| Msa0056060 | Msa1071320 | 0.816469 | 5.442206e-52 | -8.615850e-47 |
| Msa0056060 | Msa1100930 | 0.804573 | 2.024581e-49 | -8.615850e-47 |
| Msa0056060 | Msa1107190 | 0.855959 | 4.443590e-62 | -8.615850e-47 |
| Msa0056060 | Msa1107200 | 0.823238 | 1.542838e-53 | -8.615850e-47 |
| Msa0056060 | Msa1109090 | 0.802762 | 4.809179e-49 | -8.615850e-47 |
| Msa0056060 | Msa1111870 | 0.826289 | 2.943038e-54 | -8.615850e-47 |
| Msa0056060 | Msa1133230 | 0.801272 | 9.735056e-49 | -8.615850e-47 |
| Msa0056060 | Msa1138530 | 0.806298 | 8.802951e-50 | -8.615850e-47 |
| Msa0056060 | Msa1150780 | 0.809904 | 1.502602e-50 | -8.615850e-47 |
| Msa0056060 | Msa1150790 | 0.838185 | 3.340610e-57 | -8.615850e-47 |
| Msa0056060 | Msa1152920 | 0.802285 | 6.032904e-49 | -8.615850e-47 |
| Msa0056060 | Msa1177780 | 0.826101 | 3.262428e-54 | -8.615850e-47 |
| Msa0056060 | Msa1200250 | 0.808902 | 2.465120e-50 | -8.615850e-47 |
| Msa0056060 | Msa1202660 | 0.805346 | 1.395811e-49 | -8.615850e-47 |
| Msa0056060 | Msa1207310 | 0.807043 | 6.128000e-50 | -8.615850e-47 |
| Msa0056060 | Msa1208380 | 0.809025 | 2.319993e-50 | -8.615850e-47 |
| Msa0056060 | Msa1258370 | 0.800736 | 1.253109e-48 | -8.615850e-47 |
| Msa0056060 | Msa1270660 | 0.811320 | 7.424844e-51 | -8.615850e-47 |
| Msa0056060 | Msa1279480 | 0.827063 | 1.924214e-54 | -8.615850e-47 |
| Msa0056060 | Msa1285260 | 0.802748 | 4.843269e-49 | -8.615850e-47 |
| Msa0056060 | Msa1295330 | 0.824974 | 6.033938e-54 | -8.615850e-47 |
| Msa0056060 | Msa1328520 | 0.804590 | 2.007666e-49 | -8.615850e-47 |
| Msa0056060 | Msa1335230 | 0.813739 | 2.197339e-51 | -8.615850e-47 |
| Msa0056060 | Msa1355890 | 0.880408 | 5.624577e-70 | -8.615850e-47 |
| Msa0056060 | Msa1380220 | 0.802153 | 6.421296e-49 | -8.615850e-47 |
| Msa0056060 | Msa1388830 | 0.964043 | 7.841829e-123 | -8.615850e-47 |
| Msa0056060 | Msa1420270 | 0.828094 | 1.088317e-54 | -8.615850e-47 |
| Msa0056060 | Msa1421210 | 0.825421 | 4.731644e-54 | -8.615850e-47 |
| Msa0056060 | Msa1423820 | 0.800501 | 1.399411e-48 | -8.615850e-47 |
| Msa0056060 | Msa1430130 | 0.822228 | 2.649589e-53 | -8.615850e-47 |
| Msa0056060 | Msa1438840 | 0.800106 | 1.683681e-48 | -8.615850e-47 |
| Msa0056060 | Msa1457160 | 0.812056 | 5.137767e-51 | -8.615850e-47 |
| Msa0056060 | Msa1460750 | 0.822621 | 2.148152e-53 | -8.615850e-47 |
| Msa0056060 | Msa1462360 | 0.805102 | 1.569366e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056060 | MtrunA17_Chr1g0148341 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 2.78e-89 | 254 |
| Msa0056060 | MtrunA17_Chr1g0184941 | 34.951 | 103 | 62 | 2 | 23 | 125 | 11 | 108 | 2.39e-17 | 72.0 |
| Msa0056060 | MtrunA17_Chr1g0188161 | 38.393 | 112 | 61 | 2 | 14 | 125 | 4 | 107 | 1.44e-13 | 62.0 |
| Msa0056060 | MtrunA17_Chr1g0188131 | 43.902 | 82 | 43 | 2 | 45 | 125 | 29 | 108 | 1.28e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056060 | AT3G63420.1 | 36.170 | 94 | 56 | 2 | 32 | 125 | 8 | 97 | 4.31e-16 | 68.6 |
| Msa0056060 | AT3G63420.2 | 36.170 | 94 | 56 | 2 | 32 | 125 | 8 | 97 | 4.31e-16 | 68.6 |
| Msa0056060 | AT3G63420.3 | 39.759 | 83 | 46 | 2 | 32 | 114 | 48 | 126 | 4.58e-16 | 69.7 |
| Msa0056060 | AT3G22942.1 | 44.000 | 75 | 40 | 1 | 45 | 119 | 21 | 93 | 1.95e-11 | 57.0 |
Find 35 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTTCCCTGGCTTCTA+TGG | 0.223765 | 1_2:+11540032 | Msa0056060:CDS |
| CTGGTTCTGGTTGGGATAGA+TGG | 0.293101 | 1_2:+11540922 | Msa0056060:CDS |
| AACCTTGTTACTAAGTAATT+AGG | 0.299524 | 1_2:-11539893 | None:intergenic |
| TAACATGCTTGCAGGATTAA+AGG | 0.337522 | 1_2:+11540888 | Msa0056060:intron |
| TCTGGTTGGGATAGATGGTT+TGG | 0.341402 | 1_2:+11540927 | Msa0056060:CDS |
| GGTCCAGTTGATGCTGGTTC+TGG | 0.360151 | 1_2:+11540909 | Msa0056060:CDS |
| TGACCTGGAGAATATTGATT+TGG | 0.373161 | 1_2:-11540094 | None:intergenic |
| GAAAAGGTTTAATAATGATA+TGG | 0.379479 | 1_2:-11539805 | None:intergenic |
| TTTAACATTTATAAAGAGAA+AGG | 0.384919 | 1_2:+11541048 | Msa0056060:three_prime_UTR |
| GTTGGAACTGTTTCTTTCCC+TGG | 0.413466 | 1_2:+11540023 | Msa0056060:CDS |
| GAATATTGATTTGGTTATTG+AGG | 0.423057 | 1_2:-11540085 | None:intergenic |
| TTGGTTATTGAGGTTAGATA+TGG | 0.427698 | 1_2:-11540075 | None:intergenic |
| CAACCAGAACCAGCATCAAC+TGG | 0.434691 | 1_2:-11540912 | None:intergenic |
| CCTACTTCATTTGCACAAGT+TGG | 0.435219 | 1_2:+11540005 | Msa0056060:CDS |
| TTAACATTTATAAAGAGAAA+GGG | 0.449199 | 1_2:+11541049 | Msa0056060:three_prime_UTR |
| GAAGTAACAGATTCAGAAGA+TGG | 0.451442 | 1_2:+11539942 | Msa0056060:CDS |
| TCCATAAAGCAATTGAGAAA+AGG | 0.455217 | 1_2:-11539821 | None:intergenic |
| TACCATGGAAGCATAGGATC+TGG | 0.459697 | 1_2:-11540568 | None:intergenic |
| GGTTGGGATAGATGGTTTGG+AGG | 0.467119 | 1_2:+11540930 | Msa0056060:CDS |
| AGTTGATGCTGGTTCTGGTT+GGG | 0.472706 | 1_2:+11540914 | Msa0056060:CDS |
| TATGATAATGCAGGAAGAGT+TGG | 0.480511 | 1_2:+11540377 | Msa0056060:intron |
| ATTCATTGAAAAGAAAGAAA+AGG | 0.487861 | 1_2:+11539980 | Msa0056060:CDS |
| TATTGATTGCTGTCTATCCA+TGG | 0.496767 | 1_2:-11539919 | None:intergenic |
| CAGTTGATGCTGGTTCTGGT+TGG | 0.505214 | 1_2:+11540913 | Msa0056060:CDS |
| ATTAAAGGTCCAGTTGATGC+TGG | 0.509550 | 1_2:+11540903 | Msa0056060:CDS |
| CCAACTTGTGCAAATGAAGT+AGG | 0.510578 | 1_2:-11540005 | None:intergenic |
| TAACCAAATCAATATTCTCC+AGG | 0.514948 | 1_2:+11540091 | Msa0056060:CDS |
| TAATTAGGTATTATGAAAGA+AGG | 0.537826 | 1_2:-11539878 | None:intergenic |
| TGCCAGATCCTATGCTTCCA+TGG | 0.550978 | 1_2:+11540566 | Msa0056060:CDS |
| ACTCTCGAAATCATAAGCGC+TGG | 0.564148 | 1_2:+11540961 | Msa0056060:CDS |
| TGGAAGCATAGGATCTGGCA+TGG | 0.601609 | 1_2:-11540563 | None:intergenic |
| TTAGTAACAAGGTTGTGCCA+TGG | 0.605768 | 1_2:+11539902 | Msa0056060:exon |
| TGCTTACTCATTGCAGACCG+TGG | 0.621212 | 1_2:-11540427 | None:intergenic |
| AACAATAGGTGAATCTTCCA+CGG | 0.624066 | 1_2:+11540410 | Msa0056060:CDS |
| TACCTAATTACTTAGTAACA+AGG | 0.626109 | 1_2:+11539891 | Msa0056060:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGATATAGTTTTTTTT+GGG | - | chr1_2:11540256-11540275 | None:intergenic | 10.0% |
| !!! | AAATTAGATATAGTTTTTTT+TGG | - | chr1_2:11540257-11540276 | None:intergenic | 10.0% |
| !! | TAATTTACATGTTATATATA+TGG | + | chr1_2:11540314-11540333 | Msa0056060:intron | 10.0% |
| !!! | AAAACAAATACTTTTTAAAT+TGG | + | chr1_2:11540461-11540480 | Msa0056060:intron | 10.0% |
| !!! | TATAGTTATATACATATTTT+CGG | + | chr1_2:11541001-11541020 | Msa0056060:three_prime_UTR | 10.0% |
| !!! | AATTAGATATAGTTTTTTTT+GGG | - | chr1_2:11540256-11540275 | None:intergenic | 10.0% |
| !!! | AAATTAGATATAGTTTTTTT+TGG | - | chr1_2:11540257-11540276 | None:intergenic | 10.0% |
| !! | TAATTTACATGTTATATATA+TGG | + | chr1_2:11540314-11540333 | Msa0056060:intron | 10.0% |
| !!! | AAAACAAATACTTTTTAAAT+TGG | + | chr1_2:11540461-11540480 | Msa0056060:intron | 10.0% |
| !!! | TATAGTTATATACATATTTT+CGG | + | chr1_2:11541001-11541020 | Msa0056060:three_prime_UTR | 10.0% |
| !!! | AAATACTTTTTAAATTGGAT+TGG | + | chr1_2:11540466-11540485 | Msa0056060:intron | 15.0% |
| !!! | ATTGTTGTGTATTTTTTAAA+CGG | + | chr1_2:11540646-11540665 | Msa0056060:intron | 15.0% |
| !!! | ATAGTTATATACATATTTTC+GGG | + | chr1_2:11541002-11541021 | Msa0056060:three_prime_UTR | 15.0% |
| !! | TTTAACATTTATAAAGAGAA+AGG | + | chr1_2:11541048-11541067 | Msa0056060:three_prime_UTR | 15.0% |
| !! | TTAACATTTATAAAGAGAAA+GGG | + | chr1_2:11541049-11541068 | Msa0056060:three_prime_UTR | 15.0% |
| !!! | AAATACTTTTTAAATTGGAT+TGG | + | chr1_2:11540466-11540485 | Msa0056060:intron | 15.0% |
| !!! | ATTGTTGTGTATTTTTTAAA+CGG | + | chr1_2:11540646-11540665 | Msa0056060:intron | 15.0% |
| !!! | ATAGTTATATACATATTTTC+GGG | + | chr1_2:11541002-11541021 | Msa0056060:three_prime_UTR | 15.0% |
| !! | TTTAACATTTATAAAGAGAA+AGG | + | chr1_2:11541048-11541067 | Msa0056060:three_prime_UTR | 15.0% |
| !! | TTAACATTTATAAAGAGAAA+GGG | + | chr1_2:11541049-11541068 | Msa0056060:three_prime_UTR | 15.0% |
| !! | AATAATGATATGGTCAAAAA+AGG | - | chr1_2:11539798-11539817 | None:intergenic | 20.0% |
| !! | GAAAAGGTTTAATAATGATA+TGG | - | chr1_2:11539808-11539827 | None:intergenic | 20.0% |
| !! | TAATTAGGTATTATGAAAGA+AGG | - | chr1_2:11539881-11539900 | None:intergenic | 20.0% |
| !! | ATTCATTGAAAAGAAAGAAA+AGG | + | chr1_2:11539980-11539999 | Msa0056060:CDS | 20.0% |
| !! | CAAAAACTTATATATCTTCT+TGG | + | chr1_2:11540176-11540195 | Msa0056060:intron | 20.0% |
| !!! | TTAATTAAAAGCACAATGAA+TGG | - | chr1_2:11540516-11540535 | None:intergenic | 20.0% |
| !!! | ACTCACAATATTACATTTTA+AGG | + | chr1_2:11540617-11540636 | Msa0056060:intron | 20.0% |
| !!! | TTGTTGTGTATTTTTTAAAC+GGG | + | chr1_2:11540647-11540666 | Msa0056060:intron | 20.0% |
| !!! | TAGTTATATACATATTTTCG+GGG | + | chr1_2:11541003-11541022 | Msa0056060:three_prime_UTR | 20.0% |
| !! | AATAATGATATGGTCAAAAA+AGG | - | chr1_2:11539798-11539817 | None:intergenic | 20.0% |
| !! | GAAAAGGTTTAATAATGATA+TGG | - | chr1_2:11539808-11539827 | None:intergenic | 20.0% |
| !! | TAATTAGGTATTATGAAAGA+AGG | - | chr1_2:11539881-11539900 | None:intergenic | 20.0% |
| !! | ATTCATTGAAAAGAAAGAAA+AGG | + | chr1_2:11539980-11539999 | Msa0056060:CDS | 20.0% |
| !! | CAAAAACTTATATATCTTCT+TGG | + | chr1_2:11540176-11540195 | Msa0056060:intron | 20.0% |
| !!! | TTAATTAAAAGCACAATGAA+TGG | - | chr1_2:11540516-11540535 | None:intergenic | 20.0% |
| !!! | ACTCACAATATTACATTTTA+AGG | + | chr1_2:11540617-11540636 | Msa0056060:intron | 20.0% |
| !!! | TTGTTGTGTATTTTTTAAAC+GGG | + | chr1_2:11540647-11540666 | Msa0056060:intron | 20.0% |
| !!! | TAGTTATATACATATTTTCG+GGG | + | chr1_2:11541003-11541022 | Msa0056060:three_prime_UTR | 20.0% |
| ! | TACCTAATTACTTAGTAACA+AGG | + | chr1_2:11539891-11539910 | Msa0056060:five_prime_UTR | 25.0% |
| ! | AACCTTGTTACTAAGTAATT+AGG | - | chr1_2:11539896-11539915 | None:intergenic | 25.0% |
| !!! | GAATATTGATTTGGTTATTG+AGG | - | chr1_2:11540088-11540107 | None:intergenic | 25.0% |
| !! | ATTTGAACTTATGATAATGC+AGG | + | chr1_2:11540368-11540387 | Msa0056060:intron | 25.0% |
| ! | TTGGAAAAACTTGAAACAAT+AGG | + | chr1_2:11540396-11540415 | Msa0056060:CDS | 25.0% |
| !!! | TGCTATTTTTCATCATTGAA+TGG | + | chr1_2:11540489-11540508 | Msa0056060:intron | 25.0% |
| !! | AGATGATCTTAATTTTACCA+TGG | - | chr1_2:11540586-11540605 | None:intergenic | 25.0% |
| ! | TTACATGTTATCAACTCATA+TGG | - | chr1_2:11540871-11540890 | None:intergenic | 25.0% |
| ! | TACCTAATTACTTAGTAACA+AGG | + | chr1_2:11539891-11539910 | Msa0056060:five_prime_UTR | 25.0% |
| ! | AACCTTGTTACTAAGTAATT+AGG | - | chr1_2:11539896-11539915 | None:intergenic | 25.0% |
| !!! | GAATATTGATTTGGTTATTG+AGG | - | chr1_2:11540088-11540107 | None:intergenic | 25.0% |
| !! | ATTTGAACTTATGATAATGC+AGG | + | chr1_2:11540368-11540387 | Msa0056060:intron | 25.0% |
| ! | TTGGAAAAACTTGAAACAAT+AGG | + | chr1_2:11540396-11540415 | Msa0056060:CDS | 25.0% |
| !!! | TGCTATTTTTCATCATTGAA+TGG | + | chr1_2:11540489-11540508 | Msa0056060:intron | 25.0% |
| !! | AGATGATCTTAATTTTACCA+TGG | - | chr1_2:11540586-11540605 | None:intergenic | 25.0% |
| ! | TTACATGTTATCAACTCATA+TGG | - | chr1_2:11540871-11540890 | None:intergenic | 25.0% |
| ATGATATGGTCAAAAAAGGA+GGG | - | chr1_2:11539794-11539813 | None:intergenic | 30.0% | |
| AATGATATGGTCAAAAAAGG+AGG | - | chr1_2:11539795-11539814 | None:intergenic | 30.0% | |
| ! | ACCTTTTCTCAATTGCTTTA+TGG | + | chr1_2:11539820-11539839 | Msa0056060:five_prime_UTR | 30.0% |
| TCCATAAAGCAATTGAGAAA+AGG | - | chr1_2:11539824-11539843 | None:intergenic | 30.0% | |
| TTGGTTATTGAGGTTAGATA+TGG | - | chr1_2:11540078-11540097 | None:intergenic | 30.0% | |
| TAACCAAATCAATATTCTCC+AGG | + | chr1_2:11540091-11540110 | Msa0056060:CDS | 30.0% | |
| TGCAGAACTATATATCTTCT+TGG | + | chr1_2:11540285-11540304 | Msa0056060:intron | 30.0% | |
| !! | TAATTTTACCATGGAAGCAT+AGG | - | chr1_2:11540577-11540596 | None:intergenic | 30.0% |
| !! | TTAAAAAGGGTCTTGTTAAC+CGG | - | chr1_2:11540802-11540821 | None:intergenic | 30.0% |
| TGTTATCAACTCATATGGTT+AGG | - | chr1_2:11540866-11540885 | None:intergenic | 30.0% | |
| ATGATATGGTCAAAAAAGGA+GGG | - | chr1_2:11539794-11539813 | None:intergenic | 30.0% | |
| AATGATATGGTCAAAAAAGG+AGG | - | chr1_2:11539795-11539814 | None:intergenic | 30.0% | |
| ! | ACCTTTTCTCAATTGCTTTA+TGG | + | chr1_2:11539820-11539839 | Msa0056060:five_prime_UTR | 30.0% |
| TCCATAAAGCAATTGAGAAA+AGG | - | chr1_2:11539824-11539843 | None:intergenic | 30.0% | |
| TTGGTTATTGAGGTTAGATA+TGG | - | chr1_2:11540078-11540097 | None:intergenic | 30.0% | |
| TAACCAAATCAATATTCTCC+AGG | + | chr1_2:11540091-11540110 | Msa0056060:CDS | 30.0% | |
| TGCAGAACTATATATCTTCT+TGG | + | chr1_2:11540285-11540304 | Msa0056060:intron | 30.0% | |
| !! | TAATTTTACCATGGAAGCAT+AGG | - | chr1_2:11540577-11540596 | None:intergenic | 30.0% |
| !! | TTAAAAAGGGTCTTGTTAAC+CGG | - | chr1_2:11540802-11540821 | None:intergenic | 30.0% |
| TGTTATCAACTCATATGGTT+AGG | - | chr1_2:11540866-11540885 | None:intergenic | 30.0% | |
| ! | TATTGATTGCTGTCTATCCA+TGG | - | chr1_2:11539922-11539941 | None:intergenic | 35.0% |
| GAAGTAACAGATTCAGAAGA+TGG | + | chr1_2:11539942-11539961 | Msa0056060:CDS | 35.0% | |
| ! | TATGTTTTCCATAGAAGCCA+GGG | - | chr1_2:11540043-11540062 | None:intergenic | 35.0% |
| ! | TGACCTGGAGAATATTGATT+TGG | - | chr1_2:11540097-11540116 | None:intergenic | 35.0% |
| ! | TATGATAATGCAGGAAGAGT+TGG | + | chr1_2:11540377-11540396 | Msa0056060:intron | 35.0% |
| AACAATAGGTGAATCTTCCA+CGG | + | chr1_2:11540410-11540429 | Msa0056060:CDS | 35.0% | |
| ATAACATGTAACATGCTTGC+AGG | + | chr1_2:11540880-11540899 | Msa0056060:intron | 35.0% | |
| TAACATGCTTGCAGGATTAA+AGG | + | chr1_2:11540888-11540907 | Msa0056060:intron | 35.0% | |
| ! | TATTGATTGCTGTCTATCCA+TGG | - | chr1_2:11539922-11539941 | None:intergenic | 35.0% |
| GAAGTAACAGATTCAGAAGA+TGG | + | chr1_2:11539942-11539961 | Msa0056060:CDS | 35.0% | |
| ! | TATGTTTTCCATAGAAGCCA+GGG | - | chr1_2:11540043-11540062 | None:intergenic | 35.0% |
| ! | TGACCTGGAGAATATTGATT+TGG | - | chr1_2:11540097-11540116 | None:intergenic | 35.0% |
| ! | TATGATAATGCAGGAAGAGT+TGG | + | chr1_2:11540377-11540396 | Msa0056060:intron | 35.0% |
| AACAATAGGTGAATCTTCCA+CGG | + | chr1_2:11540410-11540429 | Msa0056060:CDS | 35.0% | |
| ATAACATGTAACATGCTTGC+AGG | + | chr1_2:11540880-11540899 | Msa0056060:intron | 35.0% | |
| TAACATGCTTGCAGGATTAA+AGG | + | chr1_2:11540888-11540907 | Msa0056060:intron | 35.0% | |
| ATATGGTCAAAAAAGGAGGG+TGG | - | chr1_2:11539791-11539810 | None:intergenic | 40.0% | |
| TTAGTAACAAGGTTGTGCCA+TGG | + | chr1_2:11539902-11539921 | Msa0056060:exon | 40.0% | |
| CCAACTTGTGCAAATGAAGT+AGG | - | chr1_2:11540008-11540027 | None:intergenic | 40.0% | |
| CCTACTTCATTTGCACAAGT+TGG | + | chr1_2:11540005-11540024 | Msa0056060:CDS | 40.0% | |
| ! | CTATGTTTTCCATAGAAGCC+AGG | - | chr1_2:11540044-11540063 | None:intergenic | 40.0% |
| AAATGAGATGAGAGTTGACC+TGG | - | chr1_2:11540112-11540131 | None:intergenic | 40.0% | |
| ! | ATTAAAGGTCCAGTTGATGC+TGG | + | chr1_2:11540903-11540922 | Msa0056060:CDS | 40.0% |
| ATATGGTCAAAAAAGGAGGG+TGG | - | chr1_2:11539791-11539810 | None:intergenic | 40.0% | |
| TTAGTAACAAGGTTGTGCCA+TGG | + | chr1_2:11539902-11539921 | Msa0056060:exon | 40.0% | |
| CCAACTTGTGCAAATGAAGT+AGG | - | chr1_2:11540008-11540027 | None:intergenic | 40.0% | |
| CCTACTTCATTTGCACAAGT+TGG | + | chr1_2:11540005-11540024 | Msa0056060:CDS | 40.0% | |
| ! | CTATGTTTTCCATAGAAGCC+AGG | - | chr1_2:11540044-11540063 | None:intergenic | 40.0% |
| AAATGAGATGAGAGTTGACC+TGG | - | chr1_2:11540112-11540131 | None:intergenic | 40.0% | |
| ! | ATTAAAGGTCCAGTTGATGC+TGG | + | chr1_2:11540903-11540922 | Msa0056060:CDS | 40.0% |
| ! | GTTGGAACTGTTTCTTTCCC+TGG | + | chr1_2:11540023-11540042 | Msa0056060:CDS | 45.0% |
| GTTTCTTTCCCTGGCTTCTA+TGG | + | chr1_2:11540032-11540051 | Msa0056060:CDS | 45.0% | |
| ! | TACCATGGAAGCATAGGATC+TGG | - | chr1_2:11540571-11540590 | None:intergenic | 45.0% |
| AACTAGTGTCGCGTAAACAC+CGG | + | chr1_2:11540780-11540799 | Msa0056060:intron | 45.0% | |
| !! | AGTTGATGCTGGTTCTGGTT+GGG | + | chr1_2:11540914-11540933 | Msa0056060:CDS | 45.0% |
| TCTGGTTGGGATAGATGGTT+TGG | + | chr1_2:11540927-11540946 | Msa0056060:CDS | 45.0% | |
| ACTCTCGAAATCATAAGCGC+TGG | + | chr1_2:11540961-11540980 | Msa0056060:CDS | 45.0% | |
| ! | GTTGGAACTGTTTCTTTCCC+TGG | + | chr1_2:11540023-11540042 | Msa0056060:CDS | 45.0% |
| GTTTCTTTCCCTGGCTTCTA+TGG | + | chr1_2:11540032-11540051 | Msa0056060:CDS | 45.0% | |
| ! | TACCATGGAAGCATAGGATC+TGG | - | chr1_2:11540571-11540590 | None:intergenic | 45.0% |
| AACTAGTGTCGCGTAAACAC+CGG | + | chr1_2:11540780-11540799 | Msa0056060:intron | 45.0% | |
| !! | AGTTGATGCTGGTTCTGGTT+GGG | + | chr1_2:11540914-11540933 | Msa0056060:CDS | 45.0% |
| TCTGGTTGGGATAGATGGTT+TGG | + | chr1_2:11540927-11540946 | Msa0056060:CDS | 45.0% | |
| ACTCTCGAAATCATAAGCGC+TGG | + | chr1_2:11540961-11540980 | Msa0056060:CDS | 45.0% | |
| !!! | TTATTTATATTTTAGTATTA+TGG | + | chr1_2:11540135-11540154 | Msa0056060:intron | 5.0% |
| !!! | TTATTTGTTATATTTAAAAA+GGG | - | chr1_2:11540815-11540834 | None:intergenic | 5.0% |
| !!! | ATTATTTGTTATATTTAAAA+AGG | - | chr1_2:11540816-11540835 | None:intergenic | 5.0% |
| !!! | TTATTTATATTTTAGTATTA+TGG | + | chr1_2:11540135-11540154 | Msa0056060:intron | 5.0% |
| !!! | TTATTTGTTATATTTAAAAA+GGG | - | chr1_2:11540815-11540834 | None:intergenic | 5.0% |
| !!! | ATTATTTGTTATATTTAAAA+AGG | - | chr1_2:11540816-11540835 | None:intergenic | 5.0% |
| TGCTTACTCATTGCAGACCG+TGG | - | chr1_2:11540430-11540449 | None:intergenic | 50.0% | |
| ! | TGGAAGCATAGGATCTGGCA+TGG | - | chr1_2:11540566-11540585 | None:intergenic | 50.0% |
| TGCCAGATCCTATGCTTCCA+TGG | + | chr1_2:11540566-11540585 | Msa0056060:CDS | 50.0% | |
| CAACCAGAACCAGCATCAAC+TGG | - | chr1_2:11540915-11540934 | None:intergenic | 50.0% | |
| !! | CAGTTGATGCTGGTTCTGGT+TGG | + | chr1_2:11540913-11540932 | Msa0056060:CDS | 50.0% |
| !! | CTGGTTCTGGTTGGGATAGA+TGG | + | chr1_2:11540922-11540941 | Msa0056060:CDS | 50.0% |
| ! | GGTTGGGATAGATGGTTTGG+AGG | + | chr1_2:11540930-11540949 | Msa0056060:CDS | 50.0% |
| TGCTTACTCATTGCAGACCG+TGG | - | chr1_2:11540430-11540449 | None:intergenic | 50.0% | |
| ! | TGGAAGCATAGGATCTGGCA+TGG | - | chr1_2:11540566-11540585 | None:intergenic | 50.0% |
| TGCCAGATCCTATGCTTCCA+TGG | + | chr1_2:11540566-11540585 | Msa0056060:CDS | 50.0% | |
| CAACCAGAACCAGCATCAAC+TGG | - | chr1_2:11540915-11540934 | None:intergenic | 50.0% | |
| !! | CAGTTGATGCTGGTTCTGGT+TGG | + | chr1_2:11540913-11540932 | Msa0056060:CDS | 50.0% |
| !! | CTGGTTCTGGTTGGGATAGA+TGG | + | chr1_2:11540922-11540941 | Msa0056060:CDS | 50.0% |
| ! | GGTTGGGATAGATGGTTTGG+AGG | + | chr1_2:11540930-11540949 | Msa0056060:CDS | 50.0% |
| !! | GGTCCAGTTGATGCTGGTTC+TGG | + | chr1_2:11540909-11540928 | Msa0056060:CDS | 55.0% |
| !! | GGTCCAGTTGATGCTGGTTC+TGG | + | chr1_2:11540909-11540928 | Msa0056060:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 11539788 | 11541249 | 11539788 | ID=Msa0056060;Name=Msa0056060 |
| chr1_2 | mRNA | 11539788 | 11541249 | 11539788 | ID=Msa0056060-mRNA-1;Parent=Msa0056060;Name=Msa0056060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=133|1|1|1|1|1|4|260|125 |
| chr1_2 | exon | 11539788 | 11540112 | 11539788 | ID=Msa0056060-mRNA-1:exon:4359;Parent=Msa0056060-mRNA-1 |
| chr1_2 | exon | 11540390 | 11540442 | 11540390 | ID=Msa0056060-mRNA-1:exon:4360;Parent=Msa0056060-mRNA-1 |
| chr1_2 | exon | 11540543 | 11540587 | 11540543 | ID=Msa0056060-mRNA-1:exon:4361;Parent=Msa0056060-mRNA-1 |
| chr1_2 | exon | 11540902 | 11541249 | 11540902 | ID=Msa0056060-mRNA-1:exon:4362;Parent=Msa0056060-mRNA-1 |
| chr1_2 | five_prime_UTR | 11539788 | 11539920 | 11539788 | ID=Msa0056060-mRNA-1:five_prime_utr;Parent=Msa0056060-mRNA-1 |
| chr1_2 | CDS | 11539921 | 11540112 | 11539921 | ID=Msa0056060-mRNA-1:cds;Parent=Msa0056060-mRNA-1 |
| chr1_2 | CDS | 11540390 | 11540442 | 11540390 | ID=Msa0056060-mRNA-1:cds;Parent=Msa0056060-mRNA-1 |
| chr1_2 | CDS | 11540543 | 11540587 | 11540543 | ID=Msa0056060-mRNA-1:cds;Parent=Msa0056060-mRNA-1 |
| chr1_2 | CDS | 11540902 | 11540989 | 11540902 | ID=Msa0056060-mRNA-1:cds;Parent=Msa0056060-mRNA-1 |
| chr1_2 | three_prime_UTR | 11540990 | 11541249 | 11540990 | ID=Msa0056060-mRNA-1:three_prime_utr;Parent=Msa0056060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
