Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950330 | sp|Q8L518|CK2_ARATH | 63.914 | 327 | 117 | 1 | 17 | 343 | 20 | 345 | 5.34e-161 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950330 | B7FI98 | 96.210 | 343 | 13 | 0 | 1 | 343 | 1 | 343 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa0950330 | 0.821853 | 3.236479e-53 | -8.615850e-47 |
| Msa0015130 | Msa0950330 | 0.817020 | 4.094413e-52 | -8.615850e-47 |
| Msa0049910 | Msa0950330 | 0.827236 | 1.748794e-54 | -8.615850e-47 |
| Msa0056060 | Msa0950330 | 0.819697 | 1.013474e-52 | -8.615850e-47 |
| Msa0189030 | Msa0950330 | 0.806465 | 8.118005e-50 | -8.615850e-47 |
| Msa0913080 | Msa0950330 | 0.866955 | 1.952266e-65 | -8.615850e-47 |
| Msa0950330 | Msa1355890 | 0.814120 | 1.811204e-51 | -8.615850e-47 |
| Msa0950330 | Msa1388830 | 0.809895 | 1.509431e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950330 | MtrunA17_Chr6g0466631 | 96.210 | 343 | 13 | 0 | 1 | 343 | 1 | 343 | 0.0 | 697 |
| Msa0950330 | MtrunA17_Chr1g0201341 | 77.193 | 342 | 78 | 0 | 1 | 342 | 1 | 342 | 0.0 | 575 |
| Msa0950330 | MtrunA17_Chr3g0081621 | 66.463 | 328 | 109 | 1 | 16 | 343 | 127 | 453 | 1.20e-169 | 481 |
| Msa0950330 | MtrunA17_Chr8g0354091 | 60.366 | 328 | 122 | 2 | 16 | 343 | 36 | 355 | 1.29e-150 | 428 |
| Msa0950330 | MtrunA17_Chr2g0307011 | 34.675 | 323 | 188 | 6 | 29 | 343 | 59 | 366 | 1.28e-56 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950330 | AT1G74320.1 | 63.914 | 327 | 117 | 1 | 17 | 343 | 20 | 345 | 5.43e-162 | 457 |
| Msa0950330 | AT4G09760.1 | 59.012 | 344 | 138 | 3 | 1 | 343 | 1 | 342 | 2.32e-158 | 447 |
| Msa0950330 | AT4G09760.2 | 59.012 | 344 | 138 | 3 | 1 | 343 | 1 | 342 | 2.32e-158 | 447 |
| Msa0950330 | AT1G71697.1 | 59.012 | 344 | 139 | 2 | 1 | 342 | 1 | 344 | 2.53e-156 | 442 |
| Msa0950330 | AT4G09760.3 | 55.111 | 225 | 98 | 3 | 1 | 224 | 1 | 223 | 4.33e-88 | 265 |
| Msa0950330 | AT4G09760.4 | 53.810 | 210 | 94 | 3 | 1 | 209 | 1 | 208 | 2.36e-79 | 241 |
| Msa0950330 | AT2G26830.1 | 36.422 | 313 | 181 | 5 | 35 | 339 | 58 | 360 | 1.06e-59 | 196 |
Find 74 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCAAACCATCTATTT+TGG | 0.099275 | 6_3:+38422092 | Msa0950330:CDS |
| ATCCCCTTTCATTTGGATTT+TGG | 0.109294 | 6_3:+38422803 | Msa0950330:three_prime_UTR |
| GTTAAAGAAGCCTACTTTAT+TGG | 0.134694 | 6_3:+38422628 | Msa0950330:CDS |
| CAAAAGGATATAAAGAATTT+TGG | 0.157757 | 6_3:+38420886 | Msa0950330:CDS |
| CTCTCTCCCCTCTACTTCTT+TGG | 0.223089 | 6_3:+38418053 | Msa0950330:five_prime_UTR |
| ATAAAGTAGGCTTCTTTAAC+TGG | 0.261588 | 6_3:-38422625 | None:intergenic |
| GGTCAGGGTCCGCGACTTCT+TGG | 0.287502 | 6_3:+38419047 | Msa0950330:CDS |
| GCAGCTGTGGCTGTAGATTT+AGG | 0.289983 | 6_3:+38418825 | Msa0950330:CDS |
| GCTATCAACGAAGATATTTC+AGG | 0.295078 | 6_3:-38420676 | None:intergenic |
| TGTCACAATGATCTACAATA+TGG | 0.312751 | 6_3:+38420982 | Msa0950330:CDS |
| CTTTGTAATCCCCTTTCATT+TGG | 0.314612 | 6_3:+38422796 | Msa0950330:three_prime_UTR |
| TGGTCATGTTAGAAGGGTTT+TGG | 0.318564 | 6_3:+38418944 | Msa0950330:CDS |
| TCGACATACACTCAAATGTT+TGG | 0.349159 | 6_3:-38419019 | None:intergenic |
| GTGGAGGTGAATCCCTTAAA+AGG | 0.355232 | 6_3:+38418873 | Msa0950330:CDS |
| TATGCTGCGGGCGTTGTTAT+CGG | 0.369153 | 6_3:+38420936 | Msa0950330:CDS |
| CTTCTTGGTCGGTTCACTAC+TGG | 0.369934 | 6_3:+38419062 | Msa0950330:CDS |
| TGCGAATCATTTCTGTGAAA+TGG | 0.373754 | 6_3:+38421272 | Msa0950330:CDS |
| AAAAGGTGCAATGACAAATC+AGG | 0.389457 | 6_3:+38418890 | Msa0950330:CDS |
| TTCGCAAGGTCAAATGCAAC+TGG | 0.390033 | 6_3:-38421255 | None:intergenic |
| TCGGAAGAAAATCAAGAGAT+TGG | 0.401817 | 6_3:+38420955 | Msa0950330:CDS |
| AAAGTGATGGTCATGTTAGA+AGG | 0.403264 | 6_3:+38418937 | Msa0950330:CDS |
| CCCACAAGCCCCAAAATAGA+TGG | 0.429365 | 6_3:-38422102 | None:intergenic |
| GTGCAAAGAAGGCTCAGATT+TGG | 0.434338 | 6_3:+38420737 | Msa0950330:CDS |
| TGAATATTTGAGTCTTAAAG+AGG | 0.434548 | 6_3:-38418250 | None:intergenic |
| ATCCCAAAATCCAAATGAAA+GGG | 0.450829 | 6_3:-38422806 | None:intergenic |
| AAGACATTTGAATTATTGAA+AGG | 0.469355 | 6_3:+38418768 | Msa0950330:CDS |
| AGACATTTGAATTATTGAAA+GGG | 0.472249 | 6_3:+38418769 | Msa0950330:CDS |
| TCATATGCCTGGTGCAAAGA+AGG | 0.476216 | 6_3:+38420726 | Msa0950330:CDS |
| ATCTGAGCCTTCTTTGCACC+AGG | 0.486876 | 6_3:-38420733 | None:intergenic |
| GAACAGACCAAAGAAGTAGA+GGG | 0.488935 | 6_3:-38418060 | None:intergenic |
| TAAAAGTTTATGCTCGCAAA+AGG | 0.492692 | 6_3:+38420870 | Msa0950330:CDS |
| TTTCACAATCTTCATATGCC+TGG | 0.492944 | 6_3:+38420715 | Msa0950330:CDS |
| GTGTATGTCGAAGAATGGTC+AGG | 0.494787 | 6_3:+38419031 | Msa0950330:CDS |
| TGAAGAGTTCATTCATGCTC+GGG | 0.495805 | 6_3:+38419091 | Msa0950330:CDS |
| TATACATACTTGAGTTCTGA+AGG | 0.510778 | 6_3:+38421482 | Msa0950330:CDS |
| AGCAATTATGCCAATAAAGT+AGG | 0.516378 | 6_3:-38422638 | None:intergenic |
| CTCAGATTTGGCAGAGAATG+AGG | 0.517306 | 6_3:+38420749 | Msa0950330:CDS |
| AATCCCAAAATCCAAATGAA+AGG | 0.521684 | 6_3:-38422807 | None:intergenic |
| TATTTCAGGGTCGCGGAGGT+CGG | 0.525048 | 6_3:-38420662 | None:intergenic |
| AAAGCCAAGTGATGCTGAAG+TGG | 0.528186 | 6_3:+38422039 | Msa0950330:CDS |
| TTGAAGAGTTCATTCATGCT+CGG | 0.528831 | 6_3:+38419090 | Msa0950330:CDS |
| TACAATTGACTTTGACTACA+AGG | 0.531304 | 6_3:+38422574 | Msa0950330:CDS |
| TGATCCACTTCAGCATCACT+TGG | 0.550037 | 6_3:-38422043 | None:intergenic |
| ACAATATGGTAACATCATGA+TGG | 0.554878 | 6_3:+38420996 | Msa0950330:CDS |
| TTTGAGTGTATGTCGAAGAA+TGG | 0.556398 | 6_3:+38419026 | Msa0950330:CDS |
| CAGATCTTGAGGAGCGTCGA+AGG | 0.559496 | 6_3:+38421453 | Msa0950330:intron |
| AGAACAGACCAAAGAAGTAG+AGG | 0.564883 | 6_3:-38418061 | None:intergenic |
| ATTATATGGCGAAGGAGTTG+AGG | 0.566600 | 6_3:+38418971 | Msa0950330:CDS |
| AAGTGATGGTCATGTTAGAA+GGG | 0.567355 | 6_3:+38418938 | Msa0950330:CDS |
| CTATCAACGAAGATATTTCA+GGG | 0.568554 | 6_3:-38420675 | None:intergenic |
| TAATGGTCTACCAGATCTTG+AGG | 0.574039 | 6_3:+38421442 | Msa0950330:intron |
| ACAAGGAGTTCTCAAGGCAG+AGG | 0.574763 | 6_3:+38422591 | Msa0950330:CDS |
| TGTTGAGTTAAGTATGCTGC+GGG | 0.576947 | 6_3:+38420924 | Msa0950330:CDS |
| TTGGTTCGATTATATGGCGA+AGG | 0.583342 | 6_3:+38418963 | Msa0950330:CDS |
| TTGACTACAAGGAGTTCTCA+AGG | 0.595449 | 6_3:+38422585 | Msa0950330:CDS |
| GTCAAGAACATGAGGCGTGT+CGG | 0.599809 | 6_3:-38421310 | None:intergenic |
| ACGAAGATATTTCAGGGTCG+CGG | 0.603740 | 6_3:-38420669 | None:intergenic |
| CTTGACTACAGTAAATATCC+CGG | 0.613111 | 6_3:+38421327 | Msa0950330:CDS |
| TTTCACAGAAATGATTCGCA+AGG | 0.613220 | 6_3:-38421269 | None:intergenic |
| AATGAAAGTTCTTGCAGCTG+TGG | 0.613557 | 6_3:+38418812 | Msa0950330:CDS |
| AAGATATTTCAGGGTCGCGG+AGG | 0.619917 | 6_3:-38420666 | None:intergenic |
| GAACATGAGGCGTGTCGGTG+TGG | 0.622313 | 6_3:-38421305 | None:intergenic |
| TCCCAAAATCCAAATGAAAG+GGG | 0.623632 | 6_3:-38422805 | None:intergenic |
| GGATCAGTTAGCGAATCTTG+TGG | 0.624605 | 6_3:+38422060 | Msa0950330:CDS |
| AACAGACCAAAGAAGTAGAG+GGG | 0.627469 | 6_3:-38418059 | None:intergenic |
| AATTGGCCGACGAAAAGTGA+TGG | 0.634847 | 6_3:+38418924 | Msa0950330:CDS |
| GAATCATTTCTGTGAAATGG+CGG | 0.647449 | 6_3:+38421275 | Msa0950330:CDS |
| TCGCAAGGTCAAATGCAACT+GGG | 0.649429 | 6_3:-38421254 | None:intergenic |
| TGTATGTCGAAGAATGGTCA+GGG | 0.649491 | 6_3:+38419032 | Msa0950330:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.665640 | 6_3:-38421318 | None:intergenic |
| ATGTTGAGTTAAGTATGCTG+CGG | 0.667897 | 6_3:+38420923 | Msa0950330:CDS |
| TGATGATGTGAGTACTGTGG+AGG | 0.681411 | 6_3:+38418857 | Msa0950330:CDS |
| GTGAACCGACCAAGAAGTCG+CGG | 0.686133 | 6_3:-38419056 | None:intergenic |
| AATTGATGATGTGAGTACTG+TGG | 0.696750 | 6_3:+38418854 | Msa0950330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATTAAAAATTTTAAT+TGG | - | chr6_3:38418330-38418349 | None:intergenic | 0.0% |
| !!! | TAATTTTTTTAATCAAAAAG+TGG | - | chr6_3:38418593-38418612 | None:intergenic | 10.0% |
| !!! | TTGTTTTATATACAAATAAA+AGG | + | chr6_3:38419863-38419882 | Msa0950330:intron | 10.0% |
| !!! | TTTTTATCTTTTTCTTCAAA+AGG | + | chr6_3:38418535-38418554 | Msa0950330:intron | 15.0% |
| !!! | TTTTATCTTTTTCTTCAAAA+GGG | + | chr6_3:38418536-38418555 | Msa0950330:intron | 15.0% |
| !! | TAAAATTCAATAAAGCAAAA+GGG | - | chr6_3:38419629-38419648 | None:intergenic | 15.0% |
| !! | AAATAAACTATAACAATTGT+AGG | - | chr6_3:38420390-38420409 | None:intergenic | 15.0% |
| !! | TAAAAATAAATTCAAAGTTG+TGG | + | chr6_3:38420491-38420510 | Msa0950330:intron | 15.0% |
| !! | ATTTGAGTAAGTATAATAAT+TGG | + | chr6_3:38420517-38420536 | Msa0950330:intron | 15.0% |
| !! | AAGTAAGCTTAAAAATATAA+TGG | - | chr6_3:38421177-38421196 | None:intergenic | 15.0% |
| !! | ATTGAAAATAAATGTAATTG+AGG | - | chr6_3:38421380-38421399 | None:intergenic | 15.0% |
| !! | CTAACAATAAAATTTATTGT+CGG | - | chr6_3:38421535-38421554 | None:intergenic | 15.0% |
| !!! | TAAAATTATAAGTTGATATG+TGG | - | chr6_3:38422426-38422445 | None:intergenic | 15.0% |
| !! | AGATTAAGTGAATGATAAAA+TGG | - | chr6_3:38418490-38418509 | None:intergenic | 20.0% |
| !! | AAGACATTTGAATTATTGAA+AGG | + | chr6_3:38418768-38418787 | Msa0950330:CDS | 20.0% |
| !! | AGACATTTGAATTATTGAAA+GGG | + | chr6_3:38418769-38418788 | Msa0950330:CDS | 20.0% |
| !!! | TGTTTTCTTTAATAAGTCAA+AGG | + | chr6_3:38419135-38419154 | Msa0950330:intron | 20.0% |
| !!! | TGTTACTTTGTTAGTTTATT+TGG | + | chr6_3:38419329-38419348 | Msa0950330:intron | 20.0% |
| !! | TTAATTCCATTAGTAATGTT+TGG | + | chr6_3:38419370-38419389 | Msa0950330:intron | 20.0% |
| !! | CTAAAATTCAATAAAGCAAA+AGG | - | chr6_3:38419630-38419649 | None:intergenic | 20.0% |
| !! | TAAAATACAATAAAGCAAAG+TGG | - | chr6_3:38419704-38419723 | None:intergenic | 20.0% |
| !!! | ACATTTTCAATTTGAAGTAT+CGG | + | chr6_3:38420574-38420593 | Msa0950330:intron | 20.0% |
| !!! | ATTTTTCTTCTTCTTGTTTT+TGG | + | chr6_3:38420618-38420637 | Msa0950330:intron | 20.0% |
| !!! | CAAAAGGATATAAAGAATTT+TGG | + | chr6_3:38420886-38420905 | Msa0950330:CDS | 20.0% |
| !! | TGAAACAACTATTAGAAAAA+TGG | - | chr6_3:38421620-38421639 | None:intergenic | 20.0% |
| !! | AAGTGAACTAAAAGTTAATA+AGG | + | chr6_3:38421701-38421720 | Msa0950330:intron | 20.0% |
| !! | TGTATAGTATTAGAATGAAT+GGG | - | chr6_3:38422304-38422323 | None:intergenic | 20.0% |
| !! | TTGTATAGTATTAGAATGAA+TGG | - | chr6_3:38422305-38422324 | None:intergenic | 20.0% |
| !! | ATATAACTAAAAATGTGTGA+TGG | + | chr6_3:38422736-38422755 | Msa0950330:three_prime_UTR | 20.0% |
| ! | TGAATATTTGAGTCTTAAAG+AGG | - | chr6_3:38418253-38418272 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTTCTGCTTCAA+AGG | + | chr6_3:38418272-38418291 | Msa0950330:five_prime_UTR | 25.0% |
| !!! | ATGGTTTGAATTTGTTACAA+TGG | - | chr6_3:38418471-38418490 | None:intergenic | 25.0% |
| ! | TTGTTCTTAATTATGTTGCA+TGG | + | chr6_3:38418680-38418699 | Msa0950330:intron | 25.0% |
| !!! | GTGAAACATCATTTTAATTC+CGG | + | chr6_3:38419201-38419220 | Msa0950330:intron | 25.0% |
| !! | AGCATAAACTTTTCTTATAC+CGG | - | chr6_3:38419236-38419255 | None:intergenic | 25.0% |
| !! | TCTTGTGTTTTTCTATTCAT+TGG | + | chr6_3:38419291-38419310 | Msa0950330:intron | 25.0% |
| !! | GTATTTTCTATTAAACAGAG+AGG | - | chr6_3:38420013-38420032 | None:intergenic | 25.0% |
| ! | ACACATACATAATTGAGAAA+AGG | + | chr6_3:38420070-38420089 | Msa0950330:intron | 25.0% |
| ! | ACTGTCATGATTTGATATAA+AGG | - | chr6_3:38420417-38420436 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTCAGTTACTTA+AGG | + | chr6_3:38420467-38420486 | Msa0950330:intron | 25.0% |
| !! | GTTTCTTTTCAGTTACTTAA+GGG | + | chr6_3:38420468-38420487 | Msa0950330:intron | 25.0% |
| !! | TTATGCTTGCATATTTTACT+AGG | + | chr6_3:38420830-38420849 | Msa0950330:intron | 25.0% |
| !! | TTGCATATTTTACTAGGAAA+TGG | + | chr6_3:38420836-38420855 | Msa0950330:intron | 25.0% |
| ! | TACAAGATTAATTTCGACTA+CGG | - | chr6_3:38421121-38421140 | None:intergenic | 25.0% |
| ! | AGTGATGGTATAAACTATAA+CGG | - | chr6_3:38421148-38421167 | None:intergenic | 25.0% |
| ! | TTTCTACTTATCAATGATAC+AGG | + | chr6_3:38421209-38421228 | Msa0950330:intron | 25.0% |
| !!! | TTGAGACATAAACTTGTTAA+TGG | + | chr6_3:38421425-38421444 | Msa0950330:intron | 25.0% |
| ! | TAGAGAAAAAAATCCAAATC+AGG | - | chr6_3:38421562-38421581 | None:intergenic | 25.0% |
| !!! | ATAGTTTGCTTGATTTTATG+TGG | + | chr6_3:38421581-38421600 | Msa0950330:intron | 25.0% |
| ! | TTAATTGTAAACTTGTACAC+AGG | + | chr6_3:38422013-38422032 | Msa0950330:intron | 25.0% |
| !!! | GCTTTTTCTTTTCACTTTTA+TGG | + | chr6_3:38422140-38422159 | Msa0950330:intron | 25.0% |
| !!! | CCTTGAATTATTTTGAGATT+CGG | + | chr6_3:38422397-38422416 | Msa0950330:intron | 25.0% |
| !! | TATGATGTCATTCTGAAACT+TGG | + | chr6_3:38418151-38418170 | Msa0950330:intron | 30.0% |
| ACACAGAAAATTGTTGCAAA+TGG | - | chr6_3:38418410-38418429 | None:intergenic | 30.0% | |
| ! | TTTGTCATTGCACCTTTTAA+GGG | - | chr6_3:38418888-38418907 | None:intergenic | 30.0% |
| ! | ATTTGTCATTGCACCTTTTA+AGG | - | chr6_3:38418889-38418908 | None:intergenic | 30.0% |
| ! | AATGACAAATCAGGTTTTTG+AGG | + | chr6_3:38418899-38418918 | Msa0950330:CDS | 30.0% |
| AAAGTTTATGCTTCGATAGA+AGG | + | chr6_3:38419244-38419263 | Msa0950330:intron | 30.0% | |
| TCCATTAGTAATGTTTGGTT+CGG | + | chr6_3:38419375-38419394 | Msa0950330:intron | 30.0% | |
| ! | TAGTCCAAAAAGCTTTTCTT+TGG | + | chr6_3:38419647-38419666 | Msa0950330:intron | 30.0% |
| ! | AGAACCAAAGAAAAGCTTTT+TGG | - | chr6_3:38419654-38419673 | None:intergenic | 30.0% |
| !! | GAAAAATGCTTAGCTTTGAA+AGG | + | chr6_3:38419792-38419811 | Msa0950330:intron | 30.0% |
| AGTTTCTGTCTATCAATATG+AGG | - | chr6_3:38419975-38419994 | None:intergenic | 30.0% | |
| GATCTATTGTCATGTTATCA+TGG | - | chr6_3:38420318-38420337 | None:intergenic | 30.0% | |
| TTAGAAAGACACAGAAAAAC+AGG | + | chr6_3:38420364-38420383 | Msa0950330:intron | 30.0% | |
| ACTGAAAAGAAACATGAACT+TGG | - | chr6_3:38420461-38420480 | None:intergenic | 30.0% | |
| CTATCAACGAAGATATTTCA+GGG | - | chr6_3:38420678-38420697 | None:intergenic | 30.0% | |
| TAAAAGTTTATGCTCGCAAA+AGG | + | chr6_3:38420870-38420889 | Msa0950330:CDS | 30.0% | |
| !!! | GGATATAAAGAATTTTGGCT+TGG | + | chr6_3:38420891-38420910 | Msa0950330:CDS | 30.0% |
| TGTCACAATGATCTACAATA+TGG | + | chr6_3:38420982-38421001 | Msa0950330:CDS | 30.0% | |
| ACAATATGGTAACATCATGA+TGG | + | chr6_3:38420996-38421015 | Msa0950330:CDS | 30.0% | |
| GTAGTCGAAATTAATCTTGT+AGG | + | chr6_3:38421120-38421139 | Msa0950330:intron | 30.0% | |
| ATATAATGGTACGTTAGTGA+TGG | - | chr6_3:38421163-38421182 | None:intergenic | 30.0% | |
| TGTATGAGCAATTCATTTAC+CGG | - | chr6_3:38421349-38421368 | None:intergenic | 30.0% | |
| ! | TATACATACTTGAGTTCTGA+AGG | + | chr6_3:38421482-38421501 | Msa0950330:CDS | 30.0% |
| TATTGTTAGAGATCCTGATT+TGG | + | chr6_3:38421546-38421565 | Msa0950330:intron | 30.0% | |
| CTTATGTGCTTGAAATTTGA+GGG | - | chr6_3:38421684-38421703 | None:intergenic | 30.0% | |
| ACTTATGTGCTTGAAATTTG+AGG | - | chr6_3:38421685-38421704 | None:intergenic | 30.0% | |
| TTCACATGTCTCTTCAATTT+CGG | + | chr6_3:38421727-38421746 | Msa0950330:intron | 30.0% | |
| GACCTTGTAACTTCAATAAA+TGG | + | chr6_3:38421862-38421881 | Msa0950330:intron | 30.0% | |
| CTCCATTTATTGAAGTTACA+AGG | - | chr6_3:38421867-38421886 | None:intergenic | 30.0% | |
| AAATGGAGTTCAAATATCCT+CGG | + | chr6_3:38421879-38421898 | Msa0950330:intron | 30.0% | |
| ! | TAAAGAGTGCATAAACATCT+TGG | - | chr6_3:38421949-38421968 | None:intergenic | 30.0% |
| ! | TCTTGCAAACCATCTATTTT+GGG | + | chr6_3:38422093-38422112 | Msa0950330:CDS | 30.0% |
| TTCAAAATAGATACACAACC+GGG | - | chr6_3:38422274-38422293 | None:intergenic | 30.0% | |
| GTTCAAAATAGATACACAAC+CGG | - | chr6_3:38422275-38422294 | None:intergenic | 30.0% | |
| ACGAAGTTGACAAAAAGAAA+TGG | - | chr6_3:38422343-38422362 | None:intergenic | 30.0% | |
| CCGAATCTCAAAATAATTCA+AGG | - | chr6_3:38422400-38422419 | None:intergenic | 30.0% | |
| ! | TACAATTGACTTTGACTACA+AGG | + | chr6_3:38422574-38422593 | Msa0950330:CDS | 30.0% |
| ATAAAGTAGGCTTCTTTAAC+TGG | - | chr6_3:38422628-38422647 | None:intergenic | 30.0% | |
| GTTAAAGAAGCCTACTTTAT+TGG | + | chr6_3:38422628-38422647 | Msa0950330:CDS | 30.0% | |
| AGCAATTATGCCAATAAAGT+AGG | - | chr6_3:38422641-38422660 | None:intergenic | 30.0% | |
| ATCCCAAAATCCAAATGAAA+GGG | - | chr6_3:38422809-38422828 | None:intergenic | 30.0% | |
| AATCCCAAAATCCAAATGAA+AGG | - | chr6_3:38422810-38422829 | None:intergenic | 30.0% | |
| TCATGTATTCTTCATTGCAG+TGG | + | chr6_3:38418207-38418226 | Msa0950330:intron | 35.0% | |
| !! | AATTGATGATGTGAGTACTG+TGG | + | chr6_3:38418854-38418873 | Msa0950330:CDS | 35.0% |
| ! | AAAAGGTGCAATGACAAATC+AGG | + | chr6_3:38418890-38418909 | Msa0950330:CDS | 35.0% |
| !!! | ATCAGGTTTTTGAGGTGAAT+TGG | + | chr6_3:38418907-38418926 | Msa0950330:CDS | 35.0% |
| AAAGTGATGGTCATGTTAGA+AGG | + | chr6_3:38418937-38418956 | Msa0950330:CDS | 35.0% | |
| AAGTGATGGTCATGTTAGAA+GGG | + | chr6_3:38418938-38418957 | Msa0950330:CDS | 35.0% | |
| !!! | AGGGTTTTGGTTCGATTATA+TGG | + | chr6_3:38418957-38418976 | Msa0950330:CDS | 35.0% |
| ! | AGTTGAGGTTTTCTTCGATA+GGG | + | chr6_3:38418986-38419005 | Msa0950330:CDS | 35.0% |
| TCGACATACACTCAAATGTT+TGG | - | chr6_3:38419022-38419041 | None:intergenic | 35.0% | |
| TTTGAGTGTATGTCGAAGAA+TGG | + | chr6_3:38419026-38419045 | Msa0950330:CDS | 35.0% | |
| TTGAAGAGTTCATTCATGCT+CGG | + | chr6_3:38419090-38419109 | Msa0950330:CDS | 35.0% | |
| TTAATTCCGGTACAAGATTC+CGG | + | chr6_3:38419214-38419233 | Msa0950330:intron | 35.0% | |
| ACCGAACCAAACATTACTAA+TGG | - | chr6_3:38419379-38419398 | None:intergenic | 35.0% | |
| TGATGATTACATTAGACCTG+TGG | + | chr6_3:38419557-38419576 | Msa0950330:intron | 35.0% | |
| ATTACATTAGACCTGTGGAT+GGG | + | chr6_3:38419562-38419581 | Msa0950330:intron | 35.0% | |
| ! | TACCAAACACTATTGAGTTG+TGG | + | chr6_3:38419945-38419964 | Msa0950330:intron | 35.0% |
| TTCCACAACTCAATAGTGTT+TGG | - | chr6_3:38419950-38419969 | None:intergenic | 35.0% | |
| ! | AACAGTAGAAAGACTTGCTT+GGG | - | chr6_3:38420193-38420212 | None:intergenic | 35.0% |
| ! | AAACAGTAGAAAGACTTGCT+TGG | - | chr6_3:38420194-38420213 | None:intergenic | 35.0% |
| GCTATCAACGAAGATATTTC+AGG | - | chr6_3:38420679-38420698 | None:intergenic | 35.0% | |
| TTTCACAATCTTCATATGCC+TGG | + | chr6_3:38420715-38420734 | Msa0950330:CDS | 35.0% | |
| ATGTTGAGTTAAGTATGCTG+CGG | + | chr6_3:38420923-38420942 | Msa0950330:CDS | 35.0% | |
| TCGGAAGAAAATCAAGAGAT+TGG | + | chr6_3:38420955-38420974 | Msa0950330:CDS | 35.0% | |
| TTTCACAGAAATGATTCGCA+AGG | - | chr6_3:38421272-38421291 | None:intergenic | 35.0% | |
| TGCGAATCATTTCTGTGAAA+TGG | + | chr6_3:38421272-38421291 | Msa0950330:CDS | 35.0% | |
| GAATCATTTCTGTGAAATGG+CGG | + | chr6_3:38421275-38421294 | Msa0950330:CDS | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | - | chr6_3:38421321-38421340 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+CGG | + | chr6_3:38421327-38421346 | Msa0950330:CDS | 35.0% | |
| GTATGAGCAATTCATTTACC+GGG | - | chr6_3:38421348-38421367 | None:intergenic | 35.0% | |
| AGTTCAAATATCCTCGGAAA+CGG | + | chr6_3:38421885-38421904 | Msa0950330:intron | 35.0% | |
| ! | CTCTTGCAAACCATCTATTT+TGG | + | chr6_3:38422092-38422111 | Msa0950330:CDS | 35.0% |
| ! | CTTGCAAACCATCTATTTTG+GGG | + | chr6_3:38422094-38422113 | Msa0950330:CDS | 35.0% |
| ATCTAATCGATATGAAACCC+CGG | + | chr6_3:38422253-38422272 | Msa0950330:intron | 35.0% | |
| TCAAAATAGATACACAACCG+GGG | - | chr6_3:38422273-38422292 | None:intergenic | 35.0% | |
| CTCAAAATAATTCAAGGCTC+AGG | - | chr6_3:38422394-38422413 | None:intergenic | 35.0% | |
| CTTTGTAATCCCCTTTCATT+TGG | + | chr6_3:38422796-38422815 | Msa0950330:three_prime_UTR | 35.0% | |
| ! | ATCCCCTTTCATTTGGATTT+TGG | + | chr6_3:38422803-38422822 | Msa0950330:three_prime_UTR | 35.0% |
| ! | TCCCCTTTCATTTGGATTTT+GGG | + | chr6_3:38422804-38422823 | Msa0950330:three_prime_UTR | 35.0% |
| TCCCAAAATCCAAATGAAAG+GGG | - | chr6_3:38422808-38422827 | None:intergenic | 35.0% | |
| !!! | TGGATTTTGGGATTGAGTTA+AGG | + | chr6_3:38422816-38422835 | Msa0950330:three_prime_UTR | 35.0% |
| AACAGACCAAAGAAGTAGAG+GGG | - | chr6_3:38418062-38418081 | None:intergenic | 40.0% | |
| GAACAGACCAAAGAAGTAGA+GGG | - | chr6_3:38418063-38418082 | None:intergenic | 40.0% | |
| AGAACAGACCAAAGAAGTAG+AGG | - | chr6_3:38418064-38418083 | None:intergenic | 40.0% | |
| AAGTCATCACTTTCTGCATG+TGG | - | chr6_3:38418746-38418765 | None:intergenic | 40.0% | |
| AATGAAAGTTCTTGCAGCTG+TGG | + | chr6_3:38418812-38418831 | Msa0950330:CDS | 40.0% | |
| !! | ACATGACCATCACTTTTCGT+CGG | - | chr6_3:38418933-38418952 | None:intergenic | 40.0% |
| ! | TGGTCATGTTAGAAGGGTTT+TGG | + | chr6_3:38418944-38418963 | Msa0950330:CDS | 40.0% |
| ! | TTGGTTCGATTATATGGCGA+AGG | + | chr6_3:38418963-38418982 | Msa0950330:CDS | 40.0% |
| ATTATATGGCGAAGGAGTTG+AGG | + | chr6_3:38418971-38418990 | Msa0950330:CDS | 40.0% | |
| ! | GAGTTGAGGTTTTCTTCGAT+AGG | + | chr6_3:38418985-38419004 | Msa0950330:CDS | 40.0% |
| TGTATGTCGAAGAATGGTCA+GGG | + | chr6_3:38419032-38419051 | Msa0950330:CDS | 40.0% | |
| TGAAGAGTTCATTCATGCTC+GGG | + | chr6_3:38419091-38419110 | Msa0950330:CDS | 40.0% | |
| CTTATACCGGAATCTTGTAC+CGG | - | chr6_3:38419223-38419242 | None:intergenic | 40.0% | |
| GATTACATTAGACCTGTGGA+TGG | + | chr6_3:38419561-38419580 | Msa0950330:intron | 40.0% | |
| TGTTGAGTTAAGTATGCTGC+GGG | + | chr6_3:38420924-38420943 | Msa0950330:CDS | 40.0% | |
| TAATGGTCTACCAGATCTTG+AGG | + | chr6_3:38421442-38421461 | Msa0950330:intron | 40.0% | |
| GCGTGAATTTGTCAGTGAAA+TGG | - | chr6_3:38421513-38421532 | None:intergenic | 40.0% | |
| CTTGAAATTTGAGGGTGACA+GGG | - | chr6_3:38421676-38421695 | None:intergenic | 40.0% | |
| AGCTTCACAACAGATAAGGA+AGG | - | chr6_3:38421786-38421805 | None:intergenic | 40.0% | |
| ! | AGCTAGCTTCACAACAGATA+AGG | - | chr6_3:38421790-38421809 | None:intergenic | 40.0% |
| GTCAGCTAAATGCATGTGTT+CGG | + | chr6_3:38422183-38422202 | Msa0950330:intron | 40.0% | |
| CATAACTCTGCAACACACAA+AGG | - | chr6_3:38422550-38422569 | None:intergenic | 40.0% | |
| TTGACTACAAGGAGTTCTCA+AGG | + | chr6_3:38422585-38422604 | Msa0950330:CDS | 40.0% | |
| ! | TGATGATGTGAGTACTGTGG+AGG | + | chr6_3:38418857-38418876 | Msa0950330:CDS | 45.0% |
| GTGGAGGTGAATCCCTTAAA+AGG | + | chr6_3:38418873-38418892 | Msa0950330:CDS | 45.0% | |
| AATTGGCCGACGAAAAGTGA+TGG | + | chr6_3:38418924-38418943 | Msa0950330:CDS | 45.0% | |
| GTGTATGTCGAAGAATGGTC+AGG | + | chr6_3:38419031-38419050 | Msa0950330:CDS | 45.0% | |
| !!! | TGGTTCGGTTTTTCGATGTG+TGG | + | chr6_3:38419390-38419409 | Msa0950330:intron | 45.0% |
| GCATAAATTCTCCCATCCAC+AGG | - | chr6_3:38419576-38419595 | None:intergenic | 45.0% | |
| !! | GCTTAGCTTTGAAAGGCTTC+TGG | + | chr6_3:38419799-38419818 | Msa0950330:intron | 45.0% |
| TTGCTTGGGCATAAGCGTTT+GGG | - | chr6_3:38420179-38420198 | None:intergenic | 45.0% | |
| ACGAAGATATTTCAGGGTCG+CGG | - | chr6_3:38420672-38420691 | None:intergenic | 45.0% | |
| TCATATGCCTGGTGCAAAGA+AGG | + | chr6_3:38420726-38420745 | Msa0950330:CDS | 45.0% | |
| GTGCAAAGAAGGCTCAGATT+TGG | + | chr6_3:38420737-38420756 | Msa0950330:CDS | 45.0% | |
| CTCAGATTTGGCAGAGAATG+AGG | + | chr6_3:38420749-38420768 | Msa0950330:CDS | 45.0% | |
| ! | TTGGCAGAGAATGAGGTACT+AGG | + | chr6_3:38420756-38420775 | Msa0950330:intron | 45.0% |
| TCGCAAGGTCAAATGCAACT+GGG | - | chr6_3:38421257-38421276 | None:intergenic | 45.0% | |
| TTCGCAAGGTCAAATGCAAC+TGG | - | chr6_3:38421258-38421277 | None:intergenic | 45.0% | |
| GCTTGAAATTTGAGGGTGAC+AGG | - | chr6_3:38421677-38421696 | None:intergenic | 45.0% | |
| !! | GCTATTTTCAACCGTTTCCG+AGG | - | chr6_3:38421899-38421918 | None:intergenic | 45.0% |
| AAAGCCAAGTGATGCTGAAG+TGG | + | chr6_3:38422039-38422058 | Msa0950330:CDS | 45.0% | |
| TGATCCACTTCAGCATCACT+TGG | - | chr6_3:38422046-38422065 | None:intergenic | 45.0% | |
| GGATCAGTTAGCGAATCTTG+TGG | + | chr6_3:38422060-38422079 | Msa0950330:CDS | 45.0% | |
| !!! | ACCATCTATTTTGGGGCTTG+TGG | + | chr6_3:38422101-38422120 | Msa0950330:CDS | 45.0% |
| !!! | CCATCTATTTTGGGGCTTGT+GGG | + | chr6_3:38422102-38422121 | Msa0950330:CDS | 45.0% |
| !!! | CATCTATTTTGGGGCTTGTG+GGG | + | chr6_3:38422103-38422122 | Msa0950330:CDS | 45.0% |
| !!! | TTATAATGTTTTTTTTTAAT+AGG | + | chr6_3:38418634-38418653 | Msa0950330:intron | 5.0% |
| !!! | TATAATGTTTTTTTTTAATA+GGG | + | chr6_3:38418635-38418654 | Msa0950330:intron | 5.0% |
| !!! | AAAAAATTAAAAATATCTTT+TGG | + | chr6_3:38419492-38419511 | Msa0950330:intron | 5.0% |
| CTCTCTCCCCTCTACTTCTT+TGG | + | chr6_3:38418053-38418072 | Msa0950330:five_prime_UTR | 50.0% | |
| GCAGCTGTGGCTGTAGATTT+AGG | + | chr6_3:38418825-38418844 | Msa0950330:CDS | 50.0% | |
| ! | CTTCTTGGTCGGTTCACTAC+TGG | + | chr6_3:38419062-38419081 | Msa0950330:CDS | 50.0% |
| AGCGTTTGGGCACATGACTT+AGG | - | chr6_3:38420166-38420185 | None:intergenic | 50.0% | |
| CTTGCTTGGGCATAAGCGTT+TGG | - | chr6_3:38420180-38420199 | None:intergenic | 50.0% | |
| ! | GTCTAGAGTCTGACAACGAC+TGG | - | chr6_3:38420554-38420573 | None:intergenic | 50.0% |
| AAGATATTTCAGGGTCGCGG+AGG | - | chr6_3:38420669-38420688 | None:intergenic | 50.0% | |
| ATCTGAGCCTTCTTTGCACC+AGG | - | chr6_3:38420736-38420755 | None:intergenic | 50.0% | |
| ! | TATGCTGCGGGCGTTGTTAT+CGG | + | chr6_3:38420936-38420955 | Msa0950330:CDS | 50.0% |
| GTCAAGAACATGAGGCGTGT+CGG | - | chr6_3:38421313-38421332 | None:intergenic | 50.0% | |
| CCCACAAGCCCCAAAATAGA+TGG | - | chr6_3:38422105-38422124 | None:intergenic | 50.0% | |
| ACAAGGAGTTCTCAAGGCAG+AGG | + | chr6_3:38422591-38422610 | Msa0950330:CDS | 50.0% | |
| GTGAACCGACCAAGAAGTCG+CGG | - | chr6_3:38419059-38419078 | None:intergenic | 55.0% | |
| TATTTCAGGGTCGCGGAGGT+CGG | - | chr6_3:38420665-38420684 | None:intergenic | 55.0% | |
| CTTCGACGCTCCTCAAGATC+TGG | - | chr6_3:38421455-38421474 | None:intergenic | 55.0% | |
| !! | CAGATCTTGAGGAGCGTCGA+AGG | + | chr6_3:38421453-38421472 | Msa0950330:intron | 55.0% |
| AGGGTCCGCGACTTCTTGGT+CGG | + | chr6_3:38419051-38419070 | Msa0950330:CDS | 60.0% | |
| ! | GAACATGAGGCGTGTCGGTG+TGG | - | chr6_3:38421308-38421327 | None:intergenic | 60.0% |
| GGTCAGGGTCCGCGACTTCT+TGG | + | chr6_3:38419047-38419066 | Msa0950330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 38418041 | 38422859 | 38418041 | ID=Msa0950330;Name=Msa0950330 |
| chr6_3 | mRNA | 38418041 | 38422859 | 38418041 | ID=Msa0950330-mRNA-1;Parent=Msa0950330;Name=Msa0950330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=107|1|1|1|0.75|0.66|9|204|343 |
| chr6_3 | exon | 38418041 | 38418074 | 38418041 | ID=Msa0950330-mRNA-1:exon:9385;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38418227 | 38418293 | 38418227 | ID=Msa0950330-mRNA-1:exon:9386;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38418753 | 38419112 | 38418753 | ID=Msa0950330-mRNA-1:exon:9387;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38420649 | 38420770 | 38420649 | ID=Msa0950330-mRNA-1:exon:9388;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38420852 | 38421047 | 38420852 | ID=Msa0950330-mRNA-1:exon:9389;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38421231 | 38421348 | 38421231 | ID=Msa0950330-mRNA-1:exon:9390;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38421456 | 38421503 | 38421456 | ID=Msa0950330-mRNA-1:exon:9391;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38422035 | 38422135 | 38422035 | ID=Msa0950330-mRNA-1:exon:9392;Parent=Msa0950330-mRNA-1 |
| chr6_3 | exon | 38422563 | 38422859 | 38422563 | ID=Msa0950330-mRNA-1:exon:9393;Parent=Msa0950330-mRNA-1 |
| chr6_3 | five_prime_UTR | 38418041 | 38418074 | 38418041 | ID=Msa0950330-mRNA-1:five_prime_utr;Parent=Msa0950330-mRNA-1 |
| chr6_3 | five_prime_UTR | 38418227 | 38418293 | 38418227 | ID=Msa0950330-mRNA-1:five_prime_utr;Parent=Msa0950330-mRNA-1 |
| chr6_3 | five_prime_UTR | 38418753 | 38418758 | 38418753 | ID=Msa0950330-mRNA-1:five_prime_utr;Parent=Msa0950330-mRNA-1 |
| chr6_3 | CDS | 38418759 | 38419112 | 38418759 | ID=Msa0950330-mRNA-1:cds;Parent=Msa0950330-mRNA-1 |
| chr6_3 | CDS | 38420649 | 38420770 | 38420649 | ID=Msa0950330-mRNA-1:cds;Parent=Msa0950330-mRNA-1 |
| chr6_3 | CDS | 38420852 | 38421047 | 38420852 | ID=Msa0950330-mRNA-1:cds;Parent=Msa0950330-mRNA-1 |
| chr6_3 | CDS | 38421231 | 38421348 | 38421231 | ID=Msa0950330-mRNA-1:cds;Parent=Msa0950330-mRNA-1 |
| chr6_3 | CDS | 38421456 | 38421503 | 38421456 | ID=Msa0950330-mRNA-1:cds;Parent=Msa0950330-mRNA-1 |
| chr6_3 | CDS | 38422035 | 38422135 | 38422035 | ID=Msa0950330-mRNA-1:cds;Parent=Msa0950330-mRNA-1 |
| chr6_3 | CDS | 38422563 | 38422655 | 38422563 | ID=Msa0950330-mRNA-1:cds;Parent=Msa0950330-mRNA-1 |
| chr6_3 | three_prime_UTR | 38422656 | 38422859 | 38422656 | ID=Msa0950330-mRNA-1:three_prime_utr;Parent=Msa0950330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
