Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914400 | XP_003602740.1 | 96.923 | 65 | 2 | 0 | 2 | 66 | 95 | 159 | 1.25e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220740 | Msa0914400 | 0.800216 | 1.599480e-48 | -8.615850e-47 |
| Msa0907070 | Msa0914400 | 0.800746 | 1.246968e-48 | -8.615850e-47 |
| Msa0914400 | Msa1014540 | 0.811434 | 7.015838e-51 | -8.615850e-47 |
| Msa0914400 | Msa1249490 | 0.807864 | 4.103631e-50 | -8.615850e-47 |
| Msa0914400 | Msa1452240 | 0.813283 | 2.768786e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914400 | MtrunA17_Chr3g0131571 | 96.923 | 65 | 2 | 0 | 2 | 66 | 95 | 159 | 1.15e-40 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914400 | AT5G51010.1 | 71.875 | 64 | 18 | 0 | 2 | 65 | 90 | 153 | 1.62e-28 | 99.8 |
Find 14 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCAGTTGCTTCATCTCTT+TGG | 0.255641 | 6_2:-28415732 | None:intergenic |
| GTGGGAGTTGTAGTTCTTGC+AGG | 0.375454 | 6_2:+28415878 | Msa0914400:CDS |
| ACTCCCACGGCAACTGCAAT+AGG | 0.395621 | 6_2:-28415863 | None:intergenic |
| CTCCAAAGAGATGAAGCAAC+TGG | 0.406224 | 6_2:+28415730 | Msa0914400:CDS |
| TAGGGCTTAAACCTTCGTTT+AGG | 0.424611 | 6_2:-28415646 | None:intergenic |
| TTTGTTGACATCTGTTGCAT+AGG | 0.431914 | 6_2:-28415665 | None:intergenic |
| TTGTTGACATCTGTTGCATA+GGG | 0.437509 | 6_2:-28415664 | None:intergenic |
| AAATGAAACAGATGTTAGAA+AGG | 0.526185 | 6_2:+28415693 | Msa0914400:CDS |
| ACTTCCTATTGCAGTTGCCG+TGG | 0.541016 | 6_2:+28415859 | Msa0914400:CDS |
| CTTCCTATTGCAGTTGCCGT+GGG | 0.547663 | 6_2:+28415860 | Msa0914400:CDS |
| TCAAACATTCAGCTAAAATG+TGG | 0.608477 | 6_2:-28415921 | None:intergenic |
| TCCAAAGAGATGAAGCAACT+GGG | 0.610366 | 6_2:+28415731 | Msa0914400:CDS |
| TGCAAGAACTACAACTCCCA+CGG | 0.635141 | 6_2:-28415876 | None:intergenic |
| TTTGTGGTGCTCCTAAACGA+AGG | 0.648339 | 6_2:+28415635 | Msa0914400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAGATAATAATATAAAAA+AGG | + | chr6_2:28413964-28413983 | Msa0914400:intron | 10.0% |
| !! | ACTAGATAATAATATAAAAA+AGG | + | chr6_2:28413964-28413983 | Msa0914400:intron | 10.0% |
| !! | AGAACTTTCTATTATTATTT+CGG | + | chr6_2:28414468-28414487 | Msa0914400:intron | 15.0% |
| !! | TAATATTATACTGATAAGAA+AGG | + | chr6_2:28415530-28415549 | Msa0914400:intron | 15.0% |
| !! | AGAACTTTCTATTATTATTT+CGG | + | chr6_2:28414468-28414487 | Msa0914400:intron | 15.0% |
| !! | TAATATTATACTGATAAGAA+AGG | + | chr6_2:28415530-28415549 | Msa0914400:intron | 15.0% |
| !! | GAAATATTTCAAATAGGAAA+AGG | + | chr6_2:28414076-28414095 | Msa0914400:intron | 20.0% |
| !! | TCTTTATCAAAATTAGAACT+CGG | + | chr6_2:28414350-28414369 | Msa0914400:intron | 20.0% |
| !! | AGCATATATTTCAAACTTAT+CGG | - | chr6_2:28414833-28414852 | None:intergenic | 20.0% |
| !!! | ATGTTTATTTTTGGCAAAAT+CGG | + | chr6_2:28415161-28415180 | Msa0914400:intron | 20.0% |
| !! | ATGTCAAAAACAGAAATAAT+TGG | - | chr6_2:28415809-28415828 | None:intergenic | 20.0% |
| !! | GAAATATTTCAAATAGGAAA+AGG | + | chr6_2:28414076-28414095 | Msa0914400:intron | 20.0% |
| !! | TCTTTATCAAAATTAGAACT+CGG | + | chr6_2:28414350-28414369 | Msa0914400:intron | 20.0% |
| !! | AGCATATATTTCAAACTTAT+CGG | - | chr6_2:28414833-28414852 | None:intergenic | 20.0% |
| !!! | ATGTTTATTTTTGGCAAAAT+CGG | + | chr6_2:28415161-28415180 | Msa0914400:intron | 20.0% |
| !! | ATGTCAAAAACAGAAATAAT+TGG | - | chr6_2:28415809-28415828 | None:intergenic | 20.0% |
| ! | ACAACCTTAGATAAATCATA+TGG | + | chr6_2:28414019-28414038 | Msa0914400:intron | 25.0% |
| ! | TGAACCATATGATTTATCTA+AGG | - | chr6_2:28414026-28414045 | None:intergenic | 25.0% |
| ! | CAAGCTGAAATATTTCAAAT+AGG | + | chr6_2:28414070-28414089 | Msa0914400:intron | 25.0% |
| ! | ATCATGTTGTGACTATTTAA+AGG | - | chr6_2:28414154-28414173 | None:intergenic | 25.0% |
| ! | CTTTATCAAAATTAGAACTC+GGG | + | chr6_2:28414351-28414370 | Msa0914400:intron | 25.0% |
| ! | TTTATCAAAATTAGAACTCG+GGG | + | chr6_2:28414352-28414371 | Msa0914400:intron | 25.0% |
| ! | TAACTTTATCATATTTGCCA+AGG | + | chr6_2:28414787-28414806 | Msa0914400:intron | 25.0% |
| ! | TTAATGTGTTACAATAATGC+TGG | + | chr6_2:28414912-28414931 | Msa0914400:intron | 25.0% |
| !!! | TATATGTTTAGTTGGTTTTG+TGG | + | chr6_2:28415189-28415208 | Msa0914400:intron | 25.0% |
| ! | AAAATGTATTGCCTAAATTG+CGG | - | chr6_2:28415393-28415412 | None:intergenic | 25.0% |
| ! | TTAGAGTTTCGATAAAATCA+TGG | + | chr6_2:28415411-28415430 | Msa0914400:intron | 25.0% |
| ! | TACTGATAAGAAAGGAAAAA+TGG | + | chr6_2:28415538-28415557 | Msa0914400:intron | 25.0% |
| ! | ACTGATAAGAAAGGAAAAAT+GGG | + | chr6_2:28415539-28415558 | Msa0914400:intron | 25.0% |
| ! | TTGTAAGAAGCAAAAGAAAT+AGG | + | chr6_2:28415567-28415586 | Msa0914400:intron | 25.0% |
| ! | TGTAAGAAGCAAAAGAAATA+GGG | + | chr6_2:28415568-28415587 | Msa0914400:intron | 25.0% |
| !! | TGCATTATGATTTCTGAAAA+TGG | + | chr6_2:28415602-28415621 | Msa0914400:intron | 25.0% |
| ! | AAATGAAACAGATGTTAGAA+AGG | + | chr6_2:28415693-28415712 | Msa0914400:CDS | 25.0% |
| !!! | TTTATTATGCTGATTTCAAC+AGG | + | chr6_2:28415831-28415850 | Msa0914400:intron | 25.0% |
| ! | ACAACCTTAGATAAATCATA+TGG | + | chr6_2:28414019-28414038 | Msa0914400:intron | 25.0% |
| ! | TGAACCATATGATTTATCTA+AGG | - | chr6_2:28414026-28414045 | None:intergenic | 25.0% |
| ! | CAAGCTGAAATATTTCAAAT+AGG | + | chr6_2:28414070-28414089 | Msa0914400:intron | 25.0% |
| ! | ATCATGTTGTGACTATTTAA+AGG | - | chr6_2:28414154-28414173 | None:intergenic | 25.0% |
| ! | CTTTATCAAAATTAGAACTC+GGG | + | chr6_2:28414351-28414370 | Msa0914400:intron | 25.0% |
| ! | TTTATCAAAATTAGAACTCG+GGG | + | chr6_2:28414352-28414371 | Msa0914400:intron | 25.0% |
| ! | TAACTTTATCATATTTGCCA+AGG | + | chr6_2:28414787-28414806 | Msa0914400:intron | 25.0% |
| ! | TTAATGTGTTACAATAATGC+TGG | + | chr6_2:28414912-28414931 | Msa0914400:intron | 25.0% |
| !!! | TATATGTTTAGTTGGTTTTG+TGG | + | chr6_2:28415189-28415208 | Msa0914400:intron | 25.0% |
| ! | AAAATGTATTGCCTAAATTG+CGG | - | chr6_2:28415393-28415412 | None:intergenic | 25.0% |
| ! | TTAGAGTTTCGATAAAATCA+TGG | + | chr6_2:28415411-28415430 | Msa0914400:intron | 25.0% |
| ! | TACTGATAAGAAAGGAAAAA+TGG | + | chr6_2:28415538-28415557 | Msa0914400:intron | 25.0% |
| ! | ACTGATAAGAAAGGAAAAAT+GGG | + | chr6_2:28415539-28415558 | Msa0914400:intron | 25.0% |
| ! | TTGTAAGAAGCAAAAGAAAT+AGG | + | chr6_2:28415567-28415586 | Msa0914400:intron | 25.0% |
| ! | TGTAAGAAGCAAAAGAAATA+GGG | + | chr6_2:28415568-28415587 | Msa0914400:intron | 25.0% |
| !! | TGCATTATGATTTCTGAAAA+TGG | + | chr6_2:28415602-28415621 | Msa0914400:intron | 25.0% |
| ! | AAATGAAACAGATGTTAGAA+AGG | + | chr6_2:28415693-28415712 | Msa0914400:CDS | 25.0% |
| !!! | TTTATTATGCTGATTTCAAC+AGG | + | chr6_2:28415831-28415850 | Msa0914400:intron | 25.0% |
| !! | AATATTTCAGCTTGAGTTGA+GGG | - | chr6_2:28414064-28414083 | None:intergenic | 30.0% |
| ! | AAATATTTCAGCTTGAGTTG+AGG | - | chr6_2:28414065-28414084 | None:intergenic | 30.0% |
| TCAAATAGGAAAAGGTGAAA+TGG | + | chr6_2:28414084-28414103 | Msa0914400:intron | 30.0% | |
| AGACTTTACAATTCCAACAA+TGG | + | chr6_2:28414278-28414297 | Msa0914400:intron | 30.0% | |
| GACTTTACAATTCCAACAAT+GGG | + | chr6_2:28414279-28414298 | Msa0914400:intron | 30.0% | |
| ! | CCTATCAAAATAAGGGTTTT+CGG | - | chr6_2:28414604-28414623 | None:intergenic | 30.0% |
| CGACAAACCTATCAAAATAA+GGG | - | chr6_2:28414611-28414630 | None:intergenic | 30.0% | |
| AAATCAGACATCTTACGTAT+TGG | - | chr6_2:28414764-28414783 | None:intergenic | 30.0% | |
| AATACGTAAGATGTCTGATT+TGG | + | chr6_2:28414763-28414782 | Msa0914400:intron | 30.0% | |
| CTCAATTTCATCAAGTCATT+AGG | - | chr6_2:28414960-28414979 | None:intergenic | 30.0% | |
| !!! | CTGTTTCTATTCCGTTTTTA+TGG | + | chr6_2:28415020-28415039 | Msa0914400:intron | 30.0% |
| ! | ATTTTGTGGTGAAACTTTGT+GGG | - | chr6_2:28415118-28415137 | None:intergenic | 30.0% |
| ! | AATTTTGTGGTGAAACTTTG+TGG | - | chr6_2:28415119-28415138 | None:intergenic | 30.0% |
| GTTTCACCACAAAATTGTTA+AGG | + | chr6_2:28415123-28415142 | Msa0914400:intron | 30.0% | |
| ! | TCAACTCCTTAACAATTTTG+TGG | - | chr6_2:28415132-28415151 | None:intergenic | 30.0% |
| !! | CAACCTCTGATGTTTATTTT+TGG | + | chr6_2:28415152-28415171 | Msa0914400:intron | 30.0% |
| TTGCCAAAAATAAACATCAG+AGG | - | chr6_2:28415158-28415177 | None:intergenic | 30.0% | |
| CGGTAAGATATATGTTTAGT+TGG | + | chr6_2:28415181-28415200 | Msa0914400:intron | 30.0% | |
| TCAAATTCTAAGTGCATGTT+AGG | + | chr6_2:28415324-28415343 | Msa0914400:intron | 30.0% | |
| TCACTACCAATCATAAAGAT+TGG | + | chr6_2:28415466-28415485 | Msa0914400:intron | 30.0% | |
| ATGAGACCAATCTTTATGAT+TGG | - | chr6_2:28415475-28415494 | None:intergenic | 30.0% | |
| TTTCTCTACCAAGTTTATGA+AGG | + | chr6_2:28415498-28415517 | Msa0914400:intron | 30.0% | |
| ACTTTAGACCTTCATAAACT+TGG | - | chr6_2:28415509-28415528 | None:intergenic | 30.0% | |
| GTAAGAAGCAAAAGAAATAG+GGG | + | chr6_2:28415569-28415588 | Msa0914400:intron | 30.0% | |
| AGGCAAAAAGAAAATGACTA+TGG | - | chr6_2:28415765-28415784 | None:intergenic | 30.0% | |
| !! | AATATTTCAGCTTGAGTTGA+GGG | - | chr6_2:28414064-28414083 | None:intergenic | 30.0% |
| ! | AAATATTTCAGCTTGAGTTG+AGG | - | chr6_2:28414065-28414084 | None:intergenic | 30.0% |
| TCAAATAGGAAAAGGTGAAA+TGG | + | chr6_2:28414084-28414103 | Msa0914400:intron | 30.0% | |
| AGACTTTACAATTCCAACAA+TGG | + | chr6_2:28414278-28414297 | Msa0914400:intron | 30.0% | |
| GACTTTACAATTCCAACAAT+GGG | + | chr6_2:28414279-28414298 | Msa0914400:intron | 30.0% | |
| ! | CCTATCAAAATAAGGGTTTT+CGG | - | chr6_2:28414604-28414623 | None:intergenic | 30.0% |
| CGACAAACCTATCAAAATAA+GGG | - | chr6_2:28414611-28414630 | None:intergenic | 30.0% | |
| AAATCAGACATCTTACGTAT+TGG | - | chr6_2:28414764-28414783 | None:intergenic | 30.0% | |
| AATACGTAAGATGTCTGATT+TGG | + | chr6_2:28414763-28414782 | Msa0914400:intron | 30.0% | |
| CTCAATTTCATCAAGTCATT+AGG | - | chr6_2:28414960-28414979 | None:intergenic | 30.0% | |
| !!! | CTGTTTCTATTCCGTTTTTA+TGG | + | chr6_2:28415020-28415039 | Msa0914400:intron | 30.0% |
| ! | ATTTTGTGGTGAAACTTTGT+GGG | - | chr6_2:28415118-28415137 | None:intergenic | 30.0% |
| ! | AATTTTGTGGTGAAACTTTG+TGG | - | chr6_2:28415119-28415138 | None:intergenic | 30.0% |
| GTTTCACCACAAAATTGTTA+AGG | + | chr6_2:28415123-28415142 | Msa0914400:intron | 30.0% | |
| ! | TCAACTCCTTAACAATTTTG+TGG | - | chr6_2:28415132-28415151 | None:intergenic | 30.0% |
| !! | CAACCTCTGATGTTTATTTT+TGG | + | chr6_2:28415152-28415171 | Msa0914400:intron | 30.0% |
| TTGCCAAAAATAAACATCAG+AGG | - | chr6_2:28415158-28415177 | None:intergenic | 30.0% | |
| CGGTAAGATATATGTTTAGT+TGG | + | chr6_2:28415181-28415200 | Msa0914400:intron | 30.0% | |
| TCAAATTCTAAGTGCATGTT+AGG | + | chr6_2:28415324-28415343 | Msa0914400:intron | 30.0% | |
| TCACTACCAATCATAAAGAT+TGG | + | chr6_2:28415466-28415485 | Msa0914400:intron | 30.0% | |
| ATGAGACCAATCTTTATGAT+TGG | - | chr6_2:28415475-28415494 | None:intergenic | 30.0% | |
| TTTCTCTACCAAGTTTATGA+AGG | + | chr6_2:28415498-28415517 | Msa0914400:intron | 30.0% | |
| ACTTTAGACCTTCATAAACT+TGG | - | chr6_2:28415509-28415528 | None:intergenic | 30.0% | |
| GTAAGAAGCAAAAGAAATAG+GGG | + | chr6_2:28415569-28415588 | Msa0914400:intron | 30.0% | |
| AGGCAAAAAGAAAATGACTA+TGG | - | chr6_2:28415765-28415784 | None:intergenic | 30.0% | |
| AAGGTTTATGTCATGTTGCT+AGG | + | chr6_2:28413983-28414002 | Msa0914400:intron | 35.0% | |
| AAAAGGTGAAATGGAAGCAA+TGG | + | chr6_2:28414093-28414112 | Msa0914400:intron | 35.0% | |
| TCCATGCAGATAACAATGAA+AGG | + | chr6_2:28414196-28414215 | Msa0914400:intron | 35.0% | |
| TCCTTTCATTGTTATCTGCA+TGG | - | chr6_2:28414200-28414219 | None:intergenic | 35.0% | |
| TACTCCATGAAATTTGACTC+TGG | + | chr6_2:28414223-28414242 | Msa0914400:intron | 35.0% | |
| TGGAATTGTAAAGTCTTCGT+GGG | - | chr6_2:28414274-28414293 | None:intergenic | 35.0% | |
| TTGGAATTGTAAAGTCTTCG+TGG | - | chr6_2:28414275-28414294 | None:intergenic | 35.0% | |
| TTCTATTATTATTTCGGCCC+AGG | + | chr6_2:28414474-28414493 | Msa0914400:intron | 35.0% | |
| TCTATTATTATTTCGGCCCA+GGG | + | chr6_2:28414475-28414494 | Msa0914400:intron | 35.0% | |
| GAAAGAAATAACAAACCCCT+GGG | - | chr6_2:28414494-28414513 | None:intergenic | 35.0% | |
| TGAAAGAAATAACAAACCCC+TGG | - | chr6_2:28414495-28414514 | None:intergenic | 35.0% | |
| ! | TGAATAAAAGTGTGCCTCTT+AGG | - | chr6_2:28414541-28414560 | None:intergenic | 35.0% |
| !!! | CCGAAAACCCTTATTTTGAT+AGG | + | chr6_2:28414601-28414620 | Msa0914400:intron | 35.0% |
| GCGACAAACCTATCAAAATA+AGG | - | chr6_2:28414612-28414631 | None:intergenic | 35.0% | |
| TTTGTCTAATTGACGCAGTA+CGG | - | chr6_2:28414716-28414735 | None:intergenic | 35.0% | |
| AGACATCTTACGTATTGGAA+TGG | - | chr6_2:28414759-28414778 | None:intergenic | 35.0% | |
| TATCATATTTGCCAAGGATC+AGG | + | chr6_2:28414793-28414812 | Msa0914400:intron | 35.0% | |
| ATCAATAGTTTCCTGATCCT+TGG | - | chr6_2:28414807-28414826 | None:intergenic | 35.0% | |
| ATGTGTTACAATAATGCTGG+TGG | + | chr6_2:28414915-28414934 | Msa0914400:intron | 35.0% | |
| TGTGTTACAATAATGCTGGT+GGG | + | chr6_2:28414916-28414935 | Msa0914400:intron | 35.0% | |
| GAAATTGAGAACATTTCACG+TGG | + | chr6_2:28414971-28414990 | Msa0914400:intron | 35.0% | |
| TGCTGCAAAAGCCATAAAAA+CGG | - | chr6_2:28415034-28415053 | None:intergenic | 35.0% | |
| ! | ATTAACTGTCGTGGATTACT+TGG | + | chr6_2:28415280-28415299 | Msa0914400:intron | 35.0% |
| ! | TTAACTGTCGTGGATTACTT+GGG | + | chr6_2:28415281-28415300 | Msa0914400:intron | 35.0% |
| GTTAGGTTCAGTGAATTTGA+TGG | + | chr6_2:28415341-28415360 | Msa0914400:intron | 35.0% | |
| CACAATTGTTACCGCAATTT+AGG | + | chr6_2:28415379-28415398 | Msa0914400:intron | 35.0% | |
| !! | CTCTTAAGTTCTGAATTTGG+TGG | - | chr6_2:28415439-28415458 | None:intergenic | 35.0% |
| !! | CTGCTCTTAAGTTCTGAATT+TGG | - | chr6_2:28415442-28415461 | None:intergenic | 35.0% |
| TTGTTGACATCTGTTGCATA+GGG | - | chr6_2:28415667-28415686 | None:intergenic | 35.0% | |
| TTTGTTGACATCTGTTGCAT+AGG | - | chr6_2:28415668-28415687 | None:intergenic | 35.0% | |
| AAGGTTTATGTCATGTTGCT+AGG | + | chr6_2:28413983-28414002 | Msa0914400:intron | 35.0% | |
| AAAAGGTGAAATGGAAGCAA+TGG | + | chr6_2:28414093-28414112 | Msa0914400:intron | 35.0% | |
| TCCATGCAGATAACAATGAA+AGG | + | chr6_2:28414196-28414215 | Msa0914400:intron | 35.0% | |
| TCCTTTCATTGTTATCTGCA+TGG | - | chr6_2:28414200-28414219 | None:intergenic | 35.0% | |
| TACTCCATGAAATTTGACTC+TGG | + | chr6_2:28414223-28414242 | Msa0914400:intron | 35.0% | |
| TGGAATTGTAAAGTCTTCGT+GGG | - | chr6_2:28414274-28414293 | None:intergenic | 35.0% | |
| TTGGAATTGTAAAGTCTTCG+TGG | - | chr6_2:28414275-28414294 | None:intergenic | 35.0% | |
| TTCTATTATTATTTCGGCCC+AGG | + | chr6_2:28414474-28414493 | Msa0914400:intron | 35.0% | |
| TCTATTATTATTTCGGCCCA+GGG | + | chr6_2:28414475-28414494 | Msa0914400:intron | 35.0% | |
| GAAAGAAATAACAAACCCCT+GGG | - | chr6_2:28414494-28414513 | None:intergenic | 35.0% | |
| TGAAAGAAATAACAAACCCC+TGG | - | chr6_2:28414495-28414514 | None:intergenic | 35.0% | |
| ! | TGAATAAAAGTGTGCCTCTT+AGG | - | chr6_2:28414541-28414560 | None:intergenic | 35.0% |
| !!! | CCGAAAACCCTTATTTTGAT+AGG | + | chr6_2:28414601-28414620 | Msa0914400:intron | 35.0% |
| GCGACAAACCTATCAAAATA+AGG | - | chr6_2:28414612-28414631 | None:intergenic | 35.0% | |
| TTTGTCTAATTGACGCAGTA+CGG | - | chr6_2:28414716-28414735 | None:intergenic | 35.0% | |
| AGACATCTTACGTATTGGAA+TGG | - | chr6_2:28414759-28414778 | None:intergenic | 35.0% | |
| TATCATATTTGCCAAGGATC+AGG | + | chr6_2:28414793-28414812 | Msa0914400:intron | 35.0% | |
| ATCAATAGTTTCCTGATCCT+TGG | - | chr6_2:28414807-28414826 | None:intergenic | 35.0% | |
| ATGTGTTACAATAATGCTGG+TGG | + | chr6_2:28414915-28414934 | Msa0914400:intron | 35.0% | |
| TGTGTTACAATAATGCTGGT+GGG | + | chr6_2:28414916-28414935 | Msa0914400:intron | 35.0% | |
| GAAATTGAGAACATTTCACG+TGG | + | chr6_2:28414971-28414990 | Msa0914400:intron | 35.0% | |
| TGCTGCAAAAGCCATAAAAA+CGG | - | chr6_2:28415034-28415053 | None:intergenic | 35.0% | |
| ! | ATTAACTGTCGTGGATTACT+TGG | + | chr6_2:28415280-28415299 | Msa0914400:intron | 35.0% |
| ! | TTAACTGTCGTGGATTACTT+GGG | + | chr6_2:28415281-28415300 | Msa0914400:intron | 35.0% |
| GTTAGGTTCAGTGAATTTGA+TGG | + | chr6_2:28415341-28415360 | Msa0914400:intron | 35.0% | |
| CACAATTGTTACCGCAATTT+AGG | + | chr6_2:28415379-28415398 | Msa0914400:intron | 35.0% | |
| !! | CTCTTAAGTTCTGAATTTGG+TGG | - | chr6_2:28415439-28415458 | None:intergenic | 35.0% |
| !! | CTGCTCTTAAGTTCTGAATT+TGG | - | chr6_2:28415442-28415461 | None:intergenic | 35.0% |
| TTGTTGACATCTGTTGCATA+GGG | - | chr6_2:28415667-28415686 | None:intergenic | 35.0% | |
| TTTGTTGACATCTGTTGCAT+AGG | - | chr6_2:28415668-28415687 | None:intergenic | 35.0% | |
| TCCATGAAATTTGACTCTGG+TGG | + | chr6_2:28414226-28414245 | Msa0914400:intron | 40.0% | |
| ATTGTAAAGTCTTCGTGGGA+AGG | - | chr6_2:28414270-28414289 | None:intergenic | 40.0% | |
| ACAATTCCAACAATGGGATC+CGG | + | chr6_2:28414285-28414304 | Msa0914400:intron | 40.0% | |
| ATTGGAGGAATCAACATGCA+TGG | + | chr6_2:28414322-28414341 | Msa0914400:intron | 40.0% | |
| CTATTATTATTTCGGCCCAG+GGG | + | chr6_2:28414476-28414495 | Msa0914400:intron | 40.0% | |
| CAGAACTTATGTAGCCTAAG+AGG | + | chr6_2:28414524-28414543 | Msa0914400:intron | 40.0% | |
| ! | CGAGACTTTTCTCTCAATTC+TGG | + | chr6_2:28414572-28414591 | Msa0914400:intron | 40.0% |
| ! | GACTTTTCTCTCAATTCTGG+TGG | + | chr6_2:28414575-28414594 | Msa0914400:intron | 40.0% |
| GCGACAGACTTGTGAAAATA+GGG | - | chr6_2:28414641-28414660 | None:intergenic | 40.0% | |
| AGCGACAGACTTGTGAAAAT+AGG | - | chr6_2:28414642-28414661 | None:intergenic | 40.0% | |
| GTGTTACAATAATGCTGGTG+GGG | + | chr6_2:28414917-28414936 | Msa0914400:intron | 40.0% | |
| ATGTCTTTCAGAAGCTGTCT+TGG | + | chr6_2:28415215-28415234 | Msa0914400:intron | 40.0% | |
| TTTCAGAAGCTGTCTTGGTT+TGG | + | chr6_2:28415220-28415239 | Msa0914400:intron | 40.0% | |
| GTTAATTCTGTTTCGTCAGC+AGG | - | chr6_2:28415266-28415285 | None:intergenic | 40.0% | |
| CGAAACAGAATTAACTGTCG+TGG | + | chr6_2:28415271-28415290 | Msa0914400:intron | 40.0% | |
| ! | AAATGGCGTTTTGCAGTTTG+TGG | + | chr6_2:28415619-28415638 | Msa0914400:intron | 40.0% |
| TAGGGCTTAAACCTTCGTTT+AGG | - | chr6_2:28415649-28415668 | None:intergenic | 40.0% | |
| TCCAAAGAGATGAAGCAACT+GGG | + | chr6_2:28415731-28415750 | Msa0914400:CDS | 40.0% | |
| GAGAGTCGACAAATTAAGCA+AGG | - | chr6_2:28415785-28415804 | None:intergenic | 40.0% | |
| TCCATGAAATTTGACTCTGG+TGG | + | chr6_2:28414226-28414245 | Msa0914400:intron | 40.0% | |
| ATTGTAAAGTCTTCGTGGGA+AGG | - | chr6_2:28414270-28414289 | None:intergenic | 40.0% | |
| ACAATTCCAACAATGGGATC+CGG | + | chr6_2:28414285-28414304 | Msa0914400:intron | 40.0% | |
| ATTGGAGGAATCAACATGCA+TGG | + | chr6_2:28414322-28414341 | Msa0914400:intron | 40.0% | |
| CTATTATTATTTCGGCCCAG+GGG | + | chr6_2:28414476-28414495 | Msa0914400:intron | 40.0% | |
| CAGAACTTATGTAGCCTAAG+AGG | + | chr6_2:28414524-28414543 | Msa0914400:intron | 40.0% | |
| ! | CGAGACTTTTCTCTCAATTC+TGG | + | chr6_2:28414572-28414591 | Msa0914400:intron | 40.0% |
| ! | GACTTTTCTCTCAATTCTGG+TGG | + | chr6_2:28414575-28414594 | Msa0914400:intron | 40.0% |
| GCGACAGACTTGTGAAAATA+GGG | - | chr6_2:28414641-28414660 | None:intergenic | 40.0% | |
| AGCGACAGACTTGTGAAAAT+AGG | - | chr6_2:28414642-28414661 | None:intergenic | 40.0% | |
| GTGTTACAATAATGCTGGTG+GGG | + | chr6_2:28414917-28414936 | Msa0914400:intron | 40.0% | |
| ATGTCTTTCAGAAGCTGTCT+TGG | + | chr6_2:28415215-28415234 | Msa0914400:intron | 40.0% | |
| TTTCAGAAGCTGTCTTGGTT+TGG | + | chr6_2:28415220-28415239 | Msa0914400:intron | 40.0% | |
| GTTAATTCTGTTTCGTCAGC+AGG | - | chr6_2:28415266-28415285 | None:intergenic | 40.0% | |
| CGAAACAGAATTAACTGTCG+TGG | + | chr6_2:28415271-28415290 | Msa0914400:intron | 40.0% | |
| ! | AAATGGCGTTTTGCAGTTTG+TGG | + | chr6_2:28415619-28415638 | Msa0914400:intron | 40.0% |
| TAGGGCTTAAACCTTCGTTT+AGG | - | chr6_2:28415649-28415668 | None:intergenic | 40.0% | |
| TCCAAAGAGATGAAGCAACT+GGG | + | chr6_2:28415731-28415750 | Msa0914400:CDS | 40.0% | |
| GAGAGTCGACAAATTAAGCA+AGG | - | chr6_2:28415785-28415804 | None:intergenic | 40.0% | |
| GCCACCAGAGTCAAATTTCA+TGG | - | chr6_2:28414230-28414249 | None:intergenic | 45.0% | |
| AAATTTGACTCTGGTGGCAC+TGG | + | chr6_2:28414232-28414251 | Msa0914400:intron | 45.0% | |
| CAATTCCAACAATGGGATCC+GGG | + | chr6_2:28414286-28414305 | Msa0914400:intron | 45.0% | |
| ATTTAGACTGCTGGAGCAGT+CGG | - | chr6_2:28415074-28415093 | None:intergenic | 45.0% | |
| !! | AGAAGCACCATTTAGACTGC+TGG | - | chr6_2:28415083-28415102 | None:intergenic | 45.0% |
| TTTGTGGTGCTCCTAAACGA+AGG | + | chr6_2:28415635-28415654 | Msa0914400:CDS | 45.0% | |
| CTCCAAAGAGATGAAGCAAC+TGG | + | chr6_2:28415730-28415749 | Msa0914400:CDS | 45.0% | |
| ACCCAGTTGCTTCATCTCTT+TGG | - | chr6_2:28415735-28415754 | None:intergenic | 45.0% | |
| TGCAAGAACTACAACTCCCA+CGG | - | chr6_2:28415879-28415898 | None:intergenic | 45.0% | |
| GCCACCAGAGTCAAATTTCA+TGG | - | chr6_2:28414230-28414249 | None:intergenic | 45.0% | |
| AAATTTGACTCTGGTGGCAC+TGG | + | chr6_2:28414232-28414251 | Msa0914400:intron | 45.0% | |
| CAATTCCAACAATGGGATCC+GGG | + | chr6_2:28414286-28414305 | Msa0914400:intron | 45.0% | |
| ATTTAGACTGCTGGAGCAGT+CGG | - | chr6_2:28415074-28415093 | None:intergenic | 45.0% | |
| !! | AGAAGCACCATTTAGACTGC+TGG | - | chr6_2:28415083-28415102 | None:intergenic | 45.0% |
| TTTGTGGTGCTCCTAAACGA+AGG | + | chr6_2:28415635-28415654 | Msa0914400:CDS | 45.0% | |
| CTCCAAAGAGATGAAGCAAC+TGG | + | chr6_2:28415730-28415749 | Msa0914400:CDS | 45.0% | |
| ACCCAGTTGCTTCATCTCTT+TGG | - | chr6_2:28415735-28415754 | None:intergenic | 45.0% | |
| TGCAAGAACTACAACTCCCA+CGG | - | chr6_2:28415879-28415898 | None:intergenic | 45.0% | |
| CCAATGAACAAGAGACCACC+CGG | - | chr6_2:28414307-28414326 | None:intergenic | 50.0% | |
| GGTGGTCTCTTGTTCATTGG+AGG | + | chr6_2:28414307-28414326 | Msa0914400:intron | 50.0% | |
| GTTGAGTTCTTCAGAGGTGG+AGG | + | chr6_2:28414374-28414393 | Msa0914400:intron | 50.0% | |
| TGGAGGAGACTGATGTAGGA+GGG | + | chr6_2:28414391-28414410 | Msa0914400:intron | 50.0% | |
| GACTGCTCCAGCAGTCTAAA+TGG | + | chr6_2:28415073-28415092 | Msa0914400:intron | 50.0% | |
| TGTTTCGTCAGCAGGCAATG+AGG | - | chr6_2:28415258-28415277 | None:intergenic | 50.0% | |
| ACTTCCTATTGCAGTTGCCG+TGG | + | chr6_2:28415859-28415878 | Msa0914400:CDS | 50.0% | |
| CTTCCTATTGCAGTTGCCGT+GGG | + | chr6_2:28415860-28415879 | Msa0914400:CDS | 50.0% | |
| GTGGGAGTTGTAGTTCTTGC+AGG | + | chr6_2:28415878-28415897 | Msa0914400:CDS | 50.0% | |
| CCAATGAACAAGAGACCACC+CGG | - | chr6_2:28414307-28414326 | None:intergenic | 50.0% | |
| GGTGGTCTCTTGTTCATTGG+AGG | + | chr6_2:28414307-28414326 | Msa0914400:intron | 50.0% | |
| GTTGAGTTCTTCAGAGGTGG+AGG | + | chr6_2:28414374-28414393 | Msa0914400:intron | 50.0% | |
| TGGAGGAGACTGATGTAGGA+GGG | + | chr6_2:28414391-28414410 | Msa0914400:intron | 50.0% | |
| GACTGCTCCAGCAGTCTAAA+TGG | + | chr6_2:28415073-28415092 | Msa0914400:intron | 50.0% | |
| TGTTTCGTCAGCAGGCAATG+AGG | - | chr6_2:28415258-28415277 | None:intergenic | 50.0% | |
| ACTTCCTATTGCAGTTGCCG+TGG | + | chr6_2:28415859-28415878 | Msa0914400:CDS | 50.0% | |
| CTTCCTATTGCAGTTGCCGT+GGG | + | chr6_2:28415860-28415879 | Msa0914400:CDS | 50.0% | |
| GTGGGAGTTGTAGTTCTTGC+AGG | + | chr6_2:28415878-28415897 | Msa0914400:CDS | 50.0% | |
| TTCCAACAATGGGATCCGGG+TGG | + | chr6_2:28414289-28414308 | Msa0914400:intron | 55.0% | |
| CCGGGTGGTCTCTTGTTCAT+TGG | + | chr6_2:28414304-28414323 | Msa0914400:intron | 55.0% | |
| CTCGGGGTTGAGTTCTTCAG+AGG | + | chr6_2:28414368-28414387 | Msa0914400:intron | 55.0% | |
| GGGGTTGAGTTCTTCAGAGG+TGG | + | chr6_2:28414371-28414390 | Msa0914400:intron | 55.0% | |
| GAGGTGGAGGAGACTGATGT+AGG | + | chr6_2:28414387-28414406 | Msa0914400:intron | 55.0% | |
| GTGGAGGAGACTGATGTAGG+AGG | + | chr6_2:28414390-28414409 | Msa0914400:intron | 55.0% | |
| ! | TGACGCAGTACGGAAGCGTA+GGG | - | chr6_2:28414706-28414725 | None:intergenic | 55.0% |
| ! | TTGACGCAGTACGGAAGCGT+AGG | - | chr6_2:28414707-28414726 | None:intergenic | 55.0% |
| TGCTGGTGGGGTTGTAAGCA+AGG | + | chr6_2:28414929-28414948 | Msa0914400:intron | 55.0% | |
| ACTCCCACGGCAACTGCAAT+AGG | - | chr6_2:28415866-28415885 | None:intergenic | 55.0% | |
| TTCCAACAATGGGATCCGGG+TGG | + | chr6_2:28414289-28414308 | Msa0914400:intron | 55.0% | |
| CCGGGTGGTCTCTTGTTCAT+TGG | + | chr6_2:28414304-28414323 | Msa0914400:intron | 55.0% | |
| CTCGGGGTTGAGTTCTTCAG+AGG | + | chr6_2:28414368-28414387 | Msa0914400:intron | 55.0% | |
| GGGGTTGAGTTCTTCAGAGG+TGG | + | chr6_2:28414371-28414390 | Msa0914400:intron | 55.0% | |
| GAGGTGGAGGAGACTGATGT+AGG | + | chr6_2:28414387-28414406 | Msa0914400:intron | 55.0% | |
| GTGGAGGAGACTGATGTAGG+AGG | + | chr6_2:28414390-28414409 | Msa0914400:intron | 55.0% | |
| ! | TGACGCAGTACGGAAGCGTA+GGG | - | chr6_2:28414706-28414725 | None:intergenic | 55.0% |
| ! | TTGACGCAGTACGGAAGCGT+AGG | - | chr6_2:28414707-28414726 | None:intergenic | 55.0% |
| TGCTGGTGGGGTTGTAAGCA+AGG | + | chr6_2:28414929-28414948 | Msa0914400:intron | 55.0% | |
| ACTCCCACGGCAACTGCAAT+AGG | - | chr6_2:28415866-28415885 | None:intergenic | 55.0% | |
| GACCACCCGGATCCCATTGT+TGG | - | chr6_2:28414294-28414313 | None:intergenic | 60.0% | |
| GACCACCCGGATCCCATTGT+TGG | - | chr6_2:28414294-28414313 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 28413948 | 28415931 | 28413948 | ID=Msa0914400;Name=Msa0914400 |
| chr6_2 | mRNA | 28413948 | 28415931 | 28413948 | ID=Msa0914400-mRNA-1;Parent=Msa0914400;Name=Msa0914400-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0|0.66|0.5|0.66|3|0|66 |
| chr6_2 | exon | 28413948 | 28413951 | 28413948 | ID=Msa0914400-mRNA-1:exon:5197;Parent=Msa0914400-mRNA-1 |
| chr6_2 | exon | 28415635 | 28415752 | 28415635 | ID=Msa0914400-mRNA-1:exon:5198;Parent=Msa0914400-mRNA-1 |
| chr6_2 | exon | 28415853 | 28415931 | 28415853 | ID=Msa0914400-mRNA-1:exon:5199;Parent=Msa0914400-mRNA-1 |
| chr6_2 | CDS | 28413948 | 28413951 | 28413948 | ID=Msa0914400-mRNA-1:cds;Parent=Msa0914400-mRNA-1 |
| chr6_2 | CDS | 28415635 | 28415752 | 28415635 | ID=Msa0914400-mRNA-1:cds;Parent=Msa0914400-mRNA-1 |
| chr6_2 | CDS | 28415853 | 28415931 | 28415853 | ID=Msa0914400-mRNA-1:cds;Parent=Msa0914400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
