AlfalfaGEDB | Msa0907070

M. sativa cultivar zhongmu-4 / Msa0907070

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0907070	RHN50232.1	96.000	50	2	0	44	93	93	142	2.82e-27	107

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0907070	-0.839858	1.232500e-57	-8.615850e-47
Msa0003890	Msa0907070	0.806491	8.015371e-50	-8.615850e-47
Msa0006070	Msa0907070	0.814438	1.540729e-51	-8.615850e-47
Msa0006110	Msa0907070	0.828580	8.305937e-55	-8.615850e-47
Msa0006390	Msa0907070	0.836066	1.163602e-56	-8.615850e-47
Msa0006400	Msa0907070	0.814277	1.672201e-51	-8.615850e-47
Msa0007080	Msa0907070	0.815276	1.004251e-51	-8.615850e-47
Msa0011170	Msa0907070	0.815853	7.471734e-52	-8.615850e-47
Msa0012060	Msa0907070	0.835118	2.020663e-56	-8.615850e-47
Msa0012530	Msa0907070	0.804353	2.250184e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0907070	MtrunA17_Chr6g0455241	96.000	50	2	0	44	93	93	142	2.59e-31	107
Msa0907070	MtrunA17_Chr6g0455271	90.244	41	4	0	44	84	57	97	3.41e-21	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 24 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGAGGTGCATTCTT+TGG	0.317728	6_2:+5667648	Msa0907070:CDS
AATCTTCCGGGTGAATGCTT+GGG	0.437715	6_2:+5667711	Msa0907070:CDS
AATGCTTGGGAACTGTCGTT+TGG	0.485173	6_2:+5667724	Msa0907070:CDS
ACAGTTCCCAAGCATTCACC+CGG	0.631165	6_2:-5667717	None:intergenic
ACTTGCTTGCCTTCTCAGAA+TGG	0.483184	6_2:+5670899	Msa0907070:CDS
AGATTAAATTCTTGTTAGGC+TGG	0.461800	6_2:-5667693	None:intergenic
ATGGAGGTGGACCTAACAAT+AGG	0.493318	6_2:+5670918	Msa0907070:CDS
ATTCAAGTGTCAAAAGAATG+AGG	0.580231	6_2:+5667636	Msa0907070:CDS
CAAACACAAACTGGTAGAAC+TGG	0.449515	6_2:+5670827	Msa0907070:CDS
CGGAAGATTAAATTCTTGTT+AGG	0.304148	6_2:-5667697	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAAGTGTCAAAAGAATG+AGG	+	chr6_2:5667636-5667655	Msa0907070:CDS	30.0%
AGATTAAATTCTTGTTAGGC+TGG	-	chr6_2:5667696-5667715	None:intergenic	30.0%
CGGAAGATTAAATTCTTGTT+AGG	-	chr6_2:5667700-5667719	None:intergenic	30.0%
CAATTGTCTTTCTTTGAATG+AGG	-	chr6_2:5667763-5667782	None:intergenic	30.0%
AGAAAGACAATTGTTGTAGT+TGG	+	chr6_2:5667770-5667789	Msa0907070:intron	30.0%
AAACTGAATGAATTCAACCA+AGG	-	chr6_2:5668038-5668057	None:intergenic	30.0%
CAAACATTTCATCAAACACT+TGG	+	chr6_2:5668190-5668209	Msa0907070:intron	30.0%
AAACTCACACACATAATTAG+AGG	-	chr6_2:5669481-5669500	None:intergenic	30.0%
AGTATTTGTGACCTTAAAAG+AGG	-	chr6_2:5669671-5669690	None:intergenic	30.0%
ATATAGGGTAGATAACACAA+AGG	+	chr6_2:5669734-5669753	Msa0907070:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	5667631	5670967	5667631	ID=Msa0907070;Name=Msa0907070
chr6_2	mRNA	5667631	5670967	5667631	ID=Msa0907070-mRNA-1;Parent=Msa0907070;Name=Msa0907070-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|93
chr6_2	exon	5667631	5667749	5667631	ID=Msa0907070-mRNA-1:exon:1726;Parent=Msa0907070-mRNA-1
chr6_2	exon	5670805	5670967	5670805	ID=Msa0907070-mRNA-1:exon:1727;Parent=Msa0907070-mRNA-1
chr6_2	CDS	5667631	5667749	5667631	ID=Msa0907070-mRNA-1:cds;Parent=Msa0907070-mRNA-1
chr6_2	CDS	5670805	5670967	5670805	ID=Msa0907070-mRNA-1:cds;Parent=Msa0907070-mRNA-1

Gene Sequence	>Msa0907070 ATGGTATTCAAGTGTCAAAAGAATGAGGTGCATTCTTTGGCACTTCAATACCTTCATTTAAACCAGCCTAACAAGAATTTAATCTTCCGGGTGAATGCTTGGGAACTGTCGTTTGGCAACAAGAATGCTTTGGATTTGAGTCAAACACAAACTGGTAGAACTGGTAATAACAATGGTGCTGCTGTTAAGTGTCCAATACGTCAAGGCTATCGTACTTGCTTGCCTTCTCAGAATGGAGGTGGACCTAACAATAGGTGTGGTACTTATAATAGAGTTTGCTAA
Protein sequence	>Msa0907070 MVFKCQKNEVHSLALQYLHLNQPNKNLIFRVNAWELSFGNKNALDLSQTQTGRTGNNNGAAVKCPIRQGYRTCLPSQNGGGPNNRCGTYNRVC*