AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907070 MtrunA17_Chr6g0455241 96.000 50 2 0 44 93 93 142 2.59e-31 107
Msa0907070 MtrunA17_Chr6g0455271 90.244 41 4 0 44 84 57 97 3.41e-21 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 24 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAGATTAAATTCTTGTT+AGG 0.304148 6_2:-5667697 None:intergenic
AAAGAATGAGGTGCATTCTT+TGG 0.317728 6_2:+5667648 Msa0907070:CDS
CTAACAAGAATTTAATCTTC+CGG 0.329905 6_2:+5667698 Msa0907070:CDS
TAACAAGAATTTAATCTTCC+GGG 0.350020 6_2:+5667699 Msa0907070:CDS
TAAGTACCACACCTATTGTT+AGG 0.386678 6_2:-5670929 None:intergenic
TAATCTTCCGGGTGAATGCT+TGG 0.420542 6_2:+5667710 Msa0907070:CDS
AATCTTCCGGGTGAATGCTT+GGG 0.437715 6_2:+5667711 Msa0907070:CDS
TGTTAGGCTGGTTTAAATGA+AGG 0.443604 6_2:-5667681 None:intergenic
GTACGATAGCCTTGACGTAT+TGG 0.444086 6_2:-5670878 None:intergenic
CTCATGCAGCAAGAATGCTT+TGG 0.446233 6_2:+5670796 Msa0907070:intron
CAAACACAAACTGGTAGAAC+TGG 0.449515 6_2:+5670827 Msa0907070:CDS
AGATTAAATTCTTGTTAGGC+TGG 0.461800 6_2:-5667693 None:intergenic
GATTTGAGTCAAACACAAAC+TGG 0.464256 6_2:+5670818 Msa0907070:CDS
ACTTGCTTGCCTTCTCAGAA+TGG 0.483184 6_2:+5670899 Msa0907070:CDS
AATGCTTGGGAACTGTCGTT+TGG 0.485173 6_2:+5667724 Msa0907070:CDS
ATGGAGGTGGACCTAACAAT+AGG 0.493318 6_2:+5670918 Msa0907070:CDS
TTGCCTTCTCAGAATGGAGG+TGG 0.512101 6_2:+5670905 Msa0907070:CDS
TGCTTGCCTTCTCAGAATGG+AGG 0.570153 6_2:+5670902 Msa0907070:CDS
ATTCAAGTGTCAAAAGAATG+AGG 0.580231 6_2:+5667636 Msa0907070:CDS
GGTCCACCTCCATTCTGAGA+AGG 0.625898 6_2:-5670908 None:intergenic
ACAGTTCCCAAGCATTCACC+CGG 0.631165 6_2:-5667717 None:intergenic
GGTAGAACTGGTAATAACAA+TGG 0.632835 6_2:+5670839 Msa0907070:CDS
GTTAAGTGTCCAATACGTCA+AGG 0.658926 6_2:+5670869 Msa0907070:CDS
GGTGGACCTAACAATAGGTG+TGG 0.694293 6_2:+5670923 Msa0907070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAACATATAAACATAAA+AGG + chr6_2:5668521-5668540 Msa0907070:intron 10.0%
!!! TAATAAAATTATTTTCTCTT+TGG + chr6_2:5669261-5669280 Msa0907070:intron 10.0%
!!! ATAATGATAACATTTTTTTA+AGG - chr6_2:5669336-5669355 None:intergenic 10.0%
!! TCATTTAAAAAAAGAAATAT+AGG + chr6_2:5669718-5669737 Msa0907070:intron 10.0%
!! CATTTAAAAAAAGAAATATA+GGG + chr6_2:5669719-5669738 Msa0907070:intron 10.0%
!!! AGAGAATTTTTTTAGAATTA+GGG - chr6_2:5668352-5668371 None:intergenic 15.0%
!!! TAGAGAATTTTTTTAGAATT+AGG - chr6_2:5668353-5668372 None:intergenic 15.0%
!!! TTTAGAGTTTGTTTAAATTT+TGG - chr6_2:5668472-5668491 None:intergenic 15.0%
!! ATATAAACATAAAAGGTTAA+TGG + chr6_2:5668528-5668547 Msa0907070:intron 15.0%
!! TTATAAACAAAAAGTTGAAT+TGG + chr6_2:5668921-5668940 Msa0907070:intron 15.0%
!!! GATCTAATTGATAATTTTTT+TGG + chr6_2:5669099-5669118 Msa0907070:intron 15.0%
!! ACAACTTATAAACTATATTA+TGG - chr6_2:5669392-5669411 None:intergenic 15.0%
!!! TAAAAAAATTAATTTTGCAG+TGG - chr6_2:5669579-5669598 None:intergenic 15.0%
!!! TTTCTTTTTTTAAATGAAAG+TGG - chr6_2:5669715-5669734 None:intergenic 15.0%
!! ATGAATATAATATGATGAAA+AGG - chr6_2:5670002-5670021 None:intergenic 15.0%
!! AAATAAAATTTATGAGGTAT+AGG + chr6_2:5670039-5670058 Msa0907070:intron 15.0%
!!! TTTTATGTTTGTATTATTGT+GGG - chr6_2:5670116-5670135 None:intergenic 15.0%
!!! TTTTTATGTTTGTATTATTG+TGG - chr6_2:5670117-5670136 None:intergenic 15.0%
!! AATATATCTGGTTAAAAAAT+TGG + chr6_2:5670353-5670372 Msa0907070:intron 15.0%
!! ATTAAAAATATAAGTGAGTT+GGG - chr6_2:5670492-5670511 None:intergenic 15.0%
!! AATTAAAAATATAAGTGAGT+TGG - chr6_2:5670493-5670512 None:intergenic 15.0%
!! TTATCTTACTTAATTGTGTT+TGG - chr6_2:5668273-5668292 None:intergenic 20.0%
!!! TGTTTAAATTTTGGTGTTTT+TGG - chr6_2:5668463-5668482 None:intergenic 20.0%
!!! TATGAAAACTTACTTGTTAT+TGG + chr6_2:5668559-5668578 Msa0907070:intron 20.0%
!! TGTTTATAACTTATGAAAGT+AGG - chr6_2:5668910-5668929 None:intergenic 20.0%
!!! GATATATGTGATCTTTTTTT+TGG + chr6_2:5668974-5668993 Msa0907070:intron 20.0%
!! TTTATAAGTTGTAACTCAAT+TGG + chr6_2:5669400-5669419 Msa0907070:intron 20.0%
!! GTAAAAATGTTGAAATAGTT+AGG + chr6_2:5669422-5669441 Msa0907070:intron 20.0%
!!! GAACTTTTTCTATTTTTTGA+AGG - chr6_2:5669629-5669648 None:intergenic 20.0%
!! TAATATGATGAAAAGGAAAT+GGG - chr6_2:5669995-5670014 None:intergenic 20.0%
!! ATAATATGATGAAAAGGAAA+TGG - chr6_2:5669996-5670015 None:intergenic 20.0%
!! TCAACAAAAGTTAATATATC+TGG + chr6_2:5670341-5670360 Msa0907070:intron 20.0%
! CTAACAAGAATTTAATCTTC+CGG + chr6_2:5667698-5667717 Msa0907070:CDS 25.0%
! TAACAAGAATTTAATCTTCC+GGG + chr6_2:5667699-5667718 Msa0907070:CDS 25.0%
!! TGTTGTAGTTATGAGTTTTA+GGG - chr6_2:5668235-5668254 None:intergenic 25.0%
!! ATGTTGTAGTTATGAGTTTT+AGG - chr6_2:5668236-5668255 None:intergenic 25.0%
!! ATTTGAACTTGAAGGAATTT+TGG + chr6_2:5668593-5668612 Msa0907070:intron 25.0%
!!! TGAATTGGTTGATAATGAAA+TGG + chr6_2:5668936-5668955 Msa0907070:intron 25.0%
! AAAAAGATCACATATATCAG+CGG - chr6_2:5668972-5668991 None:intergenic 25.0%
!!! ATTTTTTTGGCAACTCATAT+CGG + chr6_2:5669112-5669131 Msa0907070:intron 25.0%
!!! TGAGTATTTTTGTTCTTCAA+CGG - chr6_2:5669205-5669224 None:intergenic 25.0%
!!! AAATTTGTTCACCTCTTTTA+AGG + chr6_2:5669657-5669676 Msa0907070:intron 25.0%
! GTACTCAATTTGTATATGAA+GGG - chr6_2:5669913-5669932 None:intergenic 25.0%
! TGTACTCAATTTGTATATGA+AGG - chr6_2:5669914-5669933 None:intergenic 25.0%
!!! TTGTTATTGAGTTGATTGTA+TGG - chr6_2:5669941-5669960 None:intergenic 25.0%
!!! CTATTATCATTAGTCTTCTT+TGG - chr6_2:5670070-5670089 None:intergenic 25.0%
! CAAAGAAGACTAATGATAAT+AGG + chr6_2:5670068-5670087 Msa0907070:intron 25.0%
! ATAACTGGGATAATCTATAT+CGG - chr6_2:5670210-5670229 None:intergenic 25.0%
! TTTATTTGTGAGATTTGAGT+TGG - chr6_2:5670240-5670259 None:intergenic 25.0%
! ACAAATACAATACAACTTGT+TGG + chr6_2:5670558-5670577 Msa0907070:intron 25.0%
!! CAAATACAATACAACTTGTT+GGG + chr6_2:5670559-5670578 Msa0907070:intron 25.0%
!!! AAATACAATACAACTTGTTG+GGG + chr6_2:5670560-5670579 Msa0907070:intron 25.0%
! GTAATTGGATCAATAAGATA+AGG - chr6_2:5670680-5670699 None:intergenic 25.0%
!!! TTGTTTTGCTTAGATGTAAT+TGG - chr6_2:5670695-5670714 None:intergenic 25.0%
! ACAACATCATTGAAGATAAA+AGG + chr6_2:5670711-5670730 Msa0907070:intron 25.0%
ATTCAAGTGTCAAAAGAATG+AGG + chr6_2:5667636-5667655 Msa0907070:CDS 30.0%
AGATTAAATTCTTGTTAGGC+TGG - chr6_2:5667696-5667715 None:intergenic 30.0%
CGGAAGATTAAATTCTTGTT+AGG - chr6_2:5667700-5667719 None:intergenic 30.0%
CAATTGTCTTTCTTTGAATG+AGG - chr6_2:5667763-5667782 None:intergenic 30.0%
AGAAAGACAATTGTTGTAGT+TGG + chr6_2:5667770-5667789 Msa0907070:intron 30.0%
AAACTGAATGAATTCAACCA+AGG - chr6_2:5668038-5668057 None:intergenic 30.0%
CAAACATTTCATCAAACACT+TGG + chr6_2:5668190-5668209 Msa0907070:intron 30.0%
!! GTTGTTTGATTTGAACTTGA+AGG + chr6_2:5668585-5668604 Msa0907070:intron 30.0%
! ACTTGAAGGAATTTTGGATT+TGG + chr6_2:5668599-5668618 Msa0907070:intron 30.0%
! CTTGAAGGAATTTTGGATTT+GGG + chr6_2:5668600-5668619 Msa0907070:intron 30.0%
! GAGATTTTAGATGAGAAATG+AGG + chr6_2:5668642-5668661 Msa0907070:intron 30.0%
! TATCGGTGTGAGAATTTTAT+TGG + chr6_2:5669129-5669148 Msa0907070:intron 30.0%
AAACTCACACACATAATTAG+AGG - chr6_2:5669481-5669500 None:intergenic 30.0%
AGTATTTGTGACCTTAAAAG+AGG - chr6_2:5669671-5669690 None:intergenic 30.0%
ATATAGGGTAGATAACACAA+AGG + chr6_2:5669734-5669753 Msa0907070:intron 30.0%
!! TTTATACTTTTGGTGGCTTT+TGG - chr6_2:5669784-5669803 None:intergenic 30.0%
! AAAGCCACCAAAAGTATAAA+AGG + chr6_2:5669784-5669803 Msa0907070:intron 30.0%
! TCTCCTTCCTTTTATACTTT+TGG - chr6_2:5669794-5669813 None:intergenic 30.0%
!! ATCATTAGTCTTCTTTGGAA+AGG - chr6_2:5670065-5670084 None:intergenic 30.0%
! CAACAATAAGAGTGTATGTT+AGG - chr6_2:5670159-5670178 None:intergenic 30.0%
CTAACATACACTCTTATTGT+TGG + chr6_2:5670157-5670176 Msa0907070:intron 30.0%
GAGTTGGATTCTTAATAACT+GGG - chr6_2:5670224-5670243 None:intergenic 30.0%
! TGAGTTGGATTCTTAATAAC+TGG - chr6_2:5670225-5670244 None:intergenic 30.0%
TGAAGTGATTATCACATCAA+TGG + chr6_2:5670280-5670299 Msa0907070:intron 30.0%
!! AGAGAAAGTATCTTTGTTAG+TGG + chr6_2:5670424-5670443 Msa0907070:intron 30.0%
!!! CAACCAAAAGTCTTTTTTCT+TGG + chr6_2:5670596-5670615 Msa0907070:intron 30.0%
! TCACCAAGAAAAAAGACTTT+TGG - chr6_2:5670602-5670621 None:intergenic 30.0%
ACCAAAGAAGAAAATGAACA+AGG + chr6_2:5670638-5670657 Msa0907070:intron 30.0%
CCAAAGAAGAAAATGAACAA+GGG + chr6_2:5670639-5670658 Msa0907070:intron 30.0%
TTGTCTGATCAACAATGATT+TGG + chr6_2:5670749-5670768 Msa0907070:intron 30.0%
AAAGAATGAGGTGCATTCTT+TGG + chr6_2:5667648-5667667 Msa0907070:CDS 35.0%
!! TGTTAGGCTGGTTTAAATGA+AGG - chr6_2:5667684-5667703 None:intergenic 35.0%
AGACAATTGTTGTAGTTGGA+AGG + chr6_2:5667774-5667793 Msa0907070:intron 35.0%
! AAACATGACGAGCATGTTTT+GGG - chr6_2:5667911-5667930 None:intergenic 35.0%
! AAAACATGACGAGCATGTTT+TGG - chr6_2:5667912-5667931 None:intergenic 35.0%
! TGTAGATTTGAAGCAATGGT+CGG - chr6_2:5668133-5668152 None:intergenic 35.0%
! GTTGTGTAGATTTGAAGCAA+TGG - chr6_2:5668137-5668156 None:intergenic 35.0%
AGATGAGAAATGAGGAAATG+AGG + chr6_2:5668650-5668669 Msa0907070:intron 35.0%
!!! GTTACGTGCTGTTTTAAACA+AGG - chr6_2:5668683-5668702 None:intergenic 35.0%
GTCACGAGCTAGAATAAATA+TGG - chr6_2:5668853-5668872 None:intergenic 35.0%
TAAAATACAACGATGCTCGT+CGG + chr6_2:5669058-5669077 Msa0907070:intron 35.0%
!! TATTTTTGTTCTTCAACGGC+AGG - chr6_2:5669201-5669220 None:intergenic 35.0%
ACACACATAATTAGAGGAGT+CGG - chr6_2:5669475-5669494 None:intergenic 35.0%
! CCTTCCTTTTATACTTTTGG+TGG - chr6_2:5669791-5669810 None:intergenic 35.0%
! CCACCAAAAGTATAAAAGGA+AGG + chr6_2:5669788-5669807 Msa0907070:intron 35.0%
!! AGCTCAATAATTTGGTAGTG+TGG - chr6_2:5669829-5669848 None:intergenic 35.0%
CTACCAAATTATTGAGCTAC+TGG + chr6_2:5669831-5669850 Msa0907070:intron 35.0%
CAACCAGTAGCTCAATAATT+TGG - chr6_2:5669837-5669856 None:intergenic 35.0%
TGTATATGAAGGGACTTGAT+TGG - chr6_2:5669903-5669922 None:intergenic 35.0%
! TGATGAAAAGGAAATGGGTT+AGG - chr6_2:5669990-5670009 None:intergenic 35.0%
AATCTATATCGGCATAAGGA+AGG - chr6_2:5670199-5670218 None:intergenic 35.0%
GGATAATCTATATCGGCATA+AGG - chr6_2:5670203-5670222 None:intergenic 35.0%
ATCATATCAAGAAAGCCTCA+AGG - chr6_2:5670458-5670477 None:intergenic 35.0%
! AAATATAAGTGAGTTGGGTC+CGG - chr6_2:5670487-5670506 None:intergenic 35.0%
! CCCTTGTTCATTTTCTTCTT+TGG - chr6_2:5670642-5670661 None:intergenic 35.0%
GATTTGAGTCAAACACAAAC+TGG + chr6_2:5670818-5670837 Msa0907070:CDS 35.0%
GGTAGAACTGGTAATAACAA+TGG + chr6_2:5670839-5670858 Msa0907070:CDS 35.0%
TAAGTACCACACCTATTGTT+AGG - chr6_2:5670932-5670951 None:intergenic 35.0%
CAGAAGTTCGTGATTAGGTA+GGG - chr6_2:5667807-5667826 None:intergenic 40.0%
!! GAGAGTATCATTCAGTTGAG+TGG - chr6_2:5667950-5667969 None:intergenic 40.0%
GTTCATGCACAATTCAACGA+CGG - chr6_2:5668100-5668119 None:intergenic 40.0%
! GTAGATTTGAAGCAATGGTC+GGG - chr6_2:5668132-5668151 None:intergenic 40.0%
CTCAGACATCGTTAGTTAAG+TGG + chr6_2:5668731-5668750 Msa0907070:intron 40.0%
! TAACTAACGCAGGGACATTT+TGG + chr6_2:5668779-5668798 Msa0907070:intron 40.0%
! AACTAACGCAGGGACATTTT+GGG + chr6_2:5668780-5668799 Msa0907070:intron 40.0%
CACACATAATTAGAGGAGTC+GGG - chr6_2:5669474-5669493 None:intergenic 40.0%
!! TGGTAGTGTGGCATTTTCAA+GGG - chr6_2:5669817-5669836 None:intergenic 40.0%
!!! TTGGTAGTGTGGCATTTTCA+AGG - chr6_2:5669818-5669837 None:intergenic 40.0%
AATGGGATAAGGTTAAGGTG+TGG - chr6_2:5669867-5669886 None:intergenic 40.0%
CTCACAATGGGATAAGGTTA+AGG - chr6_2:5669872-5669891 None:intergenic 40.0%
! TTGGTAGTTGCTCTCACAAT+GGG - chr6_2:5669884-5669903 None:intergenic 40.0%
! ATTGGTAGTTGCTCTCACAA+TGG - chr6_2:5669885-5669904 None:intergenic 40.0%
!! TGAAAAGGAAATGGGTTAGG+CGG - chr6_2:5669987-5670006 None:intergenic 40.0%
TTCTTGATATGATGAGCTCC+CGG + chr6_2:5670465-5670484 Msa0907070:intron 40.0%
! AATATAAGTGAGTTGGGTCC+GGG - chr6_2:5670486-5670505 None:intergenic 40.0%
GATAAAAGGTTGTACCTCAG+AGG + chr6_2:5670725-5670744 Msa0907070:intron 40.0%
CAAACACAAACTGGTAGAAC+TGG + chr6_2:5670827-5670846 Msa0907070:CDS 40.0%
GTTAAGTGTCCAATACGTCA+AGG + chr6_2:5670869-5670888 Msa0907070:CDS 40.0%
TAATCTTCCGGGTGAATGCT+TGG + chr6_2:5667710-5667729 Msa0907070:CDS 45.0%
AATCTTCCGGGTGAATGCTT+GGG + chr6_2:5667711-5667730 Msa0907070:CDS 45.0%
AATGCTTGGGAACTGTCGTT+TGG + chr6_2:5667724-5667743 Msa0907070:CDS 45.0%
CCAGAAGTTCGTGATTAGGT+AGG - chr6_2:5667808-5667827 None:intergenic 45.0%
CCTACCTAATCACGAACTTC+TGG + chr6_2:5667805-5667824 Msa0907070:intron 45.0%
ACCTAATCACGAACTTCTGG+CGG + chr6_2:5667808-5667827 Msa0907070:intron 45.0%
TGTTCCAGTGGATCGATATG+CGG - chr6_2:5667879-5667898 None:intergenic 45.0%
TCAACCCAAAGACACAAGGT+GGG - chr6_2:5668013-5668032 None:intergenic 45.0%
TGAGAGGTTAAGAGGTCTCA+AGG - chr6_2:5668063-5668082 None:intergenic 45.0%
TCAGAGGTTGAGAGGTTAAG+AGG - chr6_2:5668071-5668090 None:intergenic 45.0%
TCTTAACCTCTCAACCTCTG+AGG + chr6_2:5668070-5668089 Msa0907070:intron 45.0%
TTGCGCTACTTAACTAACGC+AGG + chr6_2:5668769-5668788 Msa0907070:intron 45.0%
TGCGCTACTTAACTAACGCA+GGG + chr6_2:5668770-5668789 Msa0907070:intron 45.0%
! ACATTTTGGGCATGGCTGTA+GGG + chr6_2:5668793-5668812 Msa0907070:intron 45.0%
TAGGCTGAACGTTATGACCA+AGG + chr6_2:5669441-5669460 Msa0907070:intron 45.0%
GTTGCTCTCACAATGGGATA+AGG - chr6_2:5669878-5669897 None:intergenic 45.0%
GTTGATCAGACAATCCTCTG+AGG - chr6_2:5670742-5670761 None:intergenic 45.0%
CTCATGCAGCAAGAATGCTT+TGG + chr6_2:5670796-5670815 Msa0907070:intron 45.0%
! GTACGATAGCCTTGACGTAT+TGG - chr6_2:5670881-5670900 None:intergenic 45.0%
ACTTGCTTGCCTTCTCAGAA+TGG + chr6_2:5670899-5670918 Msa0907070:CDS 45.0%
ATGGAGGTGGACCTAACAAT+AGG + chr6_2:5670918-5670937 Msa0907070:CDS 45.0%
!! CAAAAAAAAAATTATTAAAT+TGG - chr6_2:5669231-5669250 None:intergenic 5.0%
!! TTATTAAAATAAAATTTATG+AGG + chr6_2:5670033-5670052 Msa0907070:intron 5.0%
!!! TAAAAATTTCTTTTATAAAT+AGG - chr6_2:5670321-5670340 None:intergenic 5.0%
ACAGTTCCCAAGCATTCACC+CGG - chr6_2:5667720-5667739 None:intergenic 50.0%
TCCGCCAGAAGTTCGTGATT+AGG - chr6_2:5667812-5667831 None:intergenic 50.0%
TTACCCGCATATCGATCCAC+TGG + chr6_2:5667872-5667891 Msa0907070:intron 50.0%
GTTCCAGTGGATCGATATGC+GGG - chr6_2:5667878-5667897 None:intergenic 50.0%
AAACGTCAAACGCTCGACGA+GGG - chr6_2:5667973-5667992 None:intergenic 50.0%
TAAACGTCAAACGCTCGACG+AGG - chr6_2:5667974-5667993 None:intergenic 50.0%
TTCCACCCACCTTGTGTCTT+TGG + chr6_2:5668005-5668024 Msa0907070:intron 50.0%
TCCACCCACCTTGTGTCTTT+GGG + chr6_2:5668006-5668025 Msa0907070:intron 50.0%
GTCAACCCAAAGACACAAGG+TGG - chr6_2:5668014-5668033 None:intergenic 50.0%
GGAGTCAACCCAAAGACACA+AGG - chr6_2:5668017-5668036 None:intergenic 50.0%
!! GTGTCTTTGGGTTGACTCCT+TGG + chr6_2:5668018-5668037 Msa0907070:intron 50.0%
! GATTTGAAGCAATGGTCGGG+TGG - chr6_2:5668129-5668148 None:intergenic 50.0%
! GACATTTTGGGCATGGCTGT+AGG + chr6_2:5668792-5668811 Msa0907070:intron 50.0%
! TAGGGCGCAAGTGTTTTGTG+TGG + chr6_2:5668811-5668830 Msa0907070:intron 50.0%
! AGGGCGCAAGTGTTTTGTGT+GGG + chr6_2:5668812-5668831 Msa0907070:intron 50.0%
TTAGTGGTCCATGTGCCTTG+AGG + chr6_2:5670440-5670459 Msa0907070:intron 50.0%
CAAGAAAGCCTCAAGGCACA+TGG - chr6_2:5670451-5670470 None:intergenic 50.0%
TGCTTGCCTTCTCAGAATGG+AGG + chr6_2:5670902-5670921 Msa0907070:CDS 50.0%
TTGCCTTCTCAGAATGGAGG+TGG + chr6_2:5670905-5670924 Msa0907070:CDS 50.0%
GGTGGACCTAACAATAGGTG+TGG + chr6_2:5670923-5670942 Msa0907070:CDS 50.0%
! GGGAGCACAACATGTTCCAG+TGG - chr6_2:5667891-5667910 None:intergenic 55.0%
AACGTCAAACGCTCGACGAG+GGG - chr6_2:5667972-5667991 None:intergenic 55.0%
CAAGGTGGGTGGAACACGTT+CGG - chr6_2:5667999-5668018 None:intergenic 55.0%
ACCCAAAGACACAAGGTGGG+TGG - chr6_2:5668010-5668029 None:intergenic 55.0%
GGAGAACCTCAGAGGTTGAG+AGG - chr6_2:5668079-5668098 None:intergenic 55.0%
TCAACGACGGAGAACCTCAG+AGG - chr6_2:5668087-5668106 None:intergenic 55.0%
! ACGCAGGGACATTTTGGGCA+TGG + chr6_2:5668785-5668804 Msa0907070:intron 55.0%
! GCGCAAGTGTTTTGTGTGGG+AGG + chr6_2:5668815-5668834 Msa0907070:intron 55.0%
AGGAGTCGGGATTCGAACCT+TGG - chr6_2:5669461-5669480 None:intergenic 55.0%
! GGTCCACCTCCATTCTGAGA+AGG - chr6_2:5670911-5670930 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 5667631 5670967 5667631 ID=Msa0907070;Name=Msa0907070
chr6_2 mRNA 5667631 5670967 5667631 ID=Msa0907070-mRNA-1;Parent=Msa0907070;Name=Msa0907070-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|0.5|1|1|2|0|93
chr6_2 exon 5667631 5667749 5667631 ID=Msa0907070-mRNA-1:exon:1726;Parent=Msa0907070-mRNA-1
chr6_2 exon 5670805 5670967 5670805 ID=Msa0907070-mRNA-1:exon:1727;Parent=Msa0907070-mRNA-1
chr6_2 CDS 5667631 5667749 5667631 ID=Msa0907070-mRNA-1:cds;Parent=Msa0907070-mRNA-1
chr6_2 CDS 5670805 5670967 5670805 ID=Msa0907070-mRNA-1:cds;Parent=Msa0907070-mRNA-1
Gene Sequence

>Msa0907070

ATGGTATTCAAGTGTCAAAAGAATGAGGTGCATTCTTTGGCACTTCAATACCTTCATTTAAACCAGCCTAACAAGAATTTAATCTTCCGGGTGAATGCTTGGGAACTGTCGTTTGGCAACAAGAATGCTTTGGATTTGAGTCAAACACAAACTGGTAGAACTGGTAATAACAATGGTGCTGCTGTTAAGTGTCCAATACGTCAAGGCTATCGTACTTGCTTGCCTTCTCAGAATGGAGGTGGACCTAACAATAGGTGTGGTACTTATAATAGAGTTTGCTAA

Protein sequence

>Msa0907070

MVFKCQKNEVHSLALQYLHLNQPNKNLIFRVNAWELSFGNKNALDLSQTQTGRTGNNNGAAVKCPIRQGYRTCLPSQNGGGPNNRCGTYNRVC*