Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918230 | XP_003620724.3 | 89.899 | 297 | 11 | 2 | 1 | 278 | 1 | 297 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918230 | sp|Q9FLH8|SCRK7_ARATH | 75.090 | 277 | 53 | 1 | 18 | 278 | 16 | 292 | 3.96e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0800370 | Msa0918230 | 0.821807 | 3.316971e-53 | -8.615850e-47 |
| Msa0249580 | Msa0918230 | 0.812118 | 4.978389e-51 | -8.615850e-47 |
| Msa0326480 | Msa0918230 | 0.800007 | 1.763571e-48 | -8.615850e-47 |
| Msa0905750 | Msa0918230 | 0.815176 | 1.057080e-51 | -8.615850e-47 |
| Msa0918230 | Msa1072900 | 0.811775 | 5.914831e-51 | -8.615850e-47 |
| Msa0918230 | Msa1336560 | 0.823271 | 1.514917e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918230 | MtrunA17_Chr6g0474331 | 89.899 | 297 | 11 | 2 | 1 | 278 | 1 | 297 | 0.0 | 528 |
| Msa0918230 | MtrunA17_Chr1g0204101 | 78.201 | 289 | 46 | 2 | 6 | 278 | 5 | 292 | 6.27e-160 | 448 |
| Msa0918230 | MtrunA17_Chr5g0434971 | 72.202 | 277 | 59 | 3 | 18 | 278 | 61 | 335 | 1.73e-131 | 377 |
| Msa0918230 | MtrunA17_Chr1g0188291 | 62.222 | 270 | 84 | 3 | 25 | 278 | 8 | 275 | 4.55e-120 | 346 |
| Msa0918230 | MtrunA17_Chr1g0183241 | 66.920 | 263 | 80 | 2 | 17 | 278 | 102 | 358 | 1.93e-116 | 340 |
| Msa0918230 | MtrunA17_Chr2g0329451 | 59.779 | 271 | 91 | 3 | 23 | 277 | 12 | 280 | 1.03e-112 | 328 |
| Msa0918230 | MtrunA17_Chr4g0033631 | 60.517 | 271 | 89 | 3 | 23 | 277 | 13 | 281 | 5.49e-112 | 326 |
| Msa0918230 | MtrunA17_Chr1g0183661 | 63.386 | 254 | 65 | 3 | 41 | 278 | 4 | 245 | 1.74e-105 | 308 |
| Msa0918230 | MtrunA17_Chr1g0171921 | 58.865 | 282 | 91 | 6 | 17 | 278 | 175 | 451 | 1.11e-96 | 293 |
| Msa0918230 | MtrunA17_Chr1g0177771 | 59.630 | 270 | 95 | 4 | 17 | 278 | 245 | 508 | 1.24e-96 | 294 |
| Msa0918230 | MtrunA17_Chr1g0177321 | 55.036 | 278 | 86 | 4 | 17 | 278 | 171 | 425 | 5.06e-85 | 262 |
| Msa0918230 | MtrunA17_Chr7g0246421 | 66.901 | 142 | 47 | 0 | 133 | 274 | 2 | 143 | 2.31e-67 | 207 |
| Msa0918230 | MtrunA17_Chr1g0176221 | 54.922 | 193 | 56 | 2 | 86 | 278 | 1 | 162 | 1.16e-61 | 194 |
| Msa0918230 | MtrunA17_Chr4g0020911 | 66.418 | 134 | 45 | 0 | 133 | 266 | 56 | 189 | 3.73e-56 | 179 |
| Msa0918230 | MtrunA17_Chr7g0246411 | 53.846 | 130 | 42 | 2 | 25 | 136 | 41 | 170 | 3.17e-37 | 130 |
| Msa0918230 | MtrunA17_Chr5g0419371 | 31.923 | 260 | 138 | 6 | 51 | 274 | 250 | 506 | 3.46e-37 | 138 |
| Msa0918230 | MtrunA17_Chr4g0008441 | 29.260 | 311 | 159 | 7 | 25 | 274 | 93 | 403 | 2.98e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918230 | AT5G51830.2 | 75.090 | 277 | 53 | 1 | 18 | 278 | 16 | 292 | 4.02e-152 | 429 |
| Msa0918230 | AT5G51830.1 | 75.090 | 277 | 53 | 1 | 18 | 278 | 16 | 292 | 4.02e-152 | 429 |
| Msa0918230 | AT1G66430.1 | 65.449 | 301 | 79 | 3 | 2 | 278 | 34 | 333 | 9.08e-135 | 386 |
| Msa0918230 | AT4G10260.1 | 65.314 | 271 | 76 | 3 | 23 | 277 | 4 | 272 | 6.58e-125 | 359 |
| Msa0918230 | AT3G59480.1 | 61.852 | 270 | 85 | 3 | 24 | 277 | 9 | 276 | 9.66e-117 | 338 |
| Msa0918230 | AT2G31390.1 | 60.967 | 269 | 87 | 3 | 25 | 277 | 9 | 275 | 1.14e-114 | 333 |
| Msa0918230 | AT1G06030.1 | 59.341 | 273 | 93 | 3 | 21 | 277 | 7 | 277 | 4.63e-113 | 329 |
| Msa0918230 | AT1G06020.1 | 59.480 | 269 | 91 | 2 | 25 | 277 | 10 | 276 | 4.66e-112 | 327 |
| Msa0918230 | AT1G69200.1 | 30.915 | 317 | 163 | 8 | 13 | 274 | 188 | 503 | 1.35e-37 | 140 |
| Msa0918230 | AT3G54090.1 | 30.794 | 315 | 156 | 8 | 25 | 278 | 103 | 416 | 1.45e-36 | 135 |
| Msa0918230 | AT1G50390.1 | 45.968 | 124 | 36 | 1 | 154 | 277 | 1 | 93 | 2.73e-28 | 106 |
Find 67 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATAAAGAAGAAATTAA+TGG | 0.201929 | 6_2:-45455872 | None:intergenic |
| TGCTGTTGGTATATCTAAAT+TGG | 0.213299 | 6_2:+45458134 | Msa0918230:CDS |
| AATTGTTACTGAAGGTTCTA+AGG | 0.221525 | 6_2:+45459287 | Msa0918230:CDS |
| CAGAACAATGTTGATACTTC+TGG | 0.257090 | 6_2:+45458585 | Msa0918230:intron |
| GGAATGGCATAATGAGTATA+TGG | 0.266779 | 6_2:+45458996 | Msa0918230:CDS |
| CGAATTTAAGATTGGCGTTA+TGG | 0.297055 | 6_2:+45458954 | Msa0918230:CDS |
| GTTCACTGGTTGTTTCCTTT+GGG | 0.302611 | 6_2:+45458016 | Msa0918230:CDS |
| ATGAAGATTGCCAAAAGTTC+TGG | 0.318686 | 6_2:+45458911 | Msa0918230:CDS |
| AGTTCACTGGTTGTTTCCTT+TGG | 0.322009 | 6_2:+45458015 | Msa0918230:CDS |
| GAGAATGGAACCAGAACTTT+TGG | 0.364359 | 6_2:-45458921 | None:intergenic |
| TTAAACTAATTGAGCCATAA+TGG | 0.372891 | 6_2:-45458853 | None:intergenic |
| GCATATCAGCACTTGGATTC+CGG | 0.387276 | 6_2:-45458689 | None:intergenic |
| GGATCAAGCCGATGTCATTA+AGG | 0.392693 | 6_2:+45459018 | Msa0918230:CDS |
| GGCCGTCTGCCGAGGCTGCT+CGG | 0.399158 | 6_2:+45458975 | Msa0918230:CDS |
| AAAACAACATCATCATCATT+AGG | 0.412207 | 6_2:-45459231 | None:intergenic |
| GCTGGTGATGCATTTGTTAG+TGG | 0.420129 | 6_2:+45460214 | Msa0918230:CDS |
| GTTAAACCTGTTGACACAAC+TGG | 0.432282 | 6_2:+45460190 | Msa0918230:CDS |
| CATAACGCCAATCTTAAATT+CGG | 0.434934 | 6_2:-45458953 | None:intergenic |
| ATATGATCCGAATTTAAGAT+TGG | 0.437752 | 6_2:+45458946 | Msa0918230:CDS |
| CCAGCACCAGTTGTGTCAAC+AGG | 0.441337 | 6_2:-45460196 | None:intergenic |
| AAGAAATTAATGGACCGAAA+AGG | 0.442736 | 6_2:-45455862 | None:intergenic |
| AGAAATTAATGGACCGAAAA+GGG | 0.457687 | 6_2:-45455861 | None:intergenic |
| GCTGTTGGTATATCTAAATT+GGG | 0.462847 | 6_2:+45458135 | Msa0918230:CDS |
| CTGTGCAGGAATTTCGAGGC+AGG | 0.465166 | 6_2:+45460152 | Msa0918230:intron |
| GCTCACTCTAATACCCCATC+AGG | 0.482096 | 6_2:+45455995 | Msa0918230:CDS |
| GAATGGCATAATGAGTATAT+GGG | 0.488190 | 6_2:+45458997 | Msa0918230:CDS |
| GGCGAGCGACACTCCTCCCT+CGG | 0.493015 | 6_2:-45458064 | None:intergenic |
| TCTTAGAAAAGAAGAGCATA+AGG | 0.495925 | 6_2:+45457987 | Msa0918230:CDS |
| GAATTTCGAGGCAGGGTTGG+AGG | 0.497205 | 6_2:+45460160 | Msa0918230:CDS |
| TTCCGAGCAGCCTCGGCAGA+CGG | 0.505848 | 6_2:-45458977 | None:intergenic |
| ATTCGGATCATATGAGAGAA+TGG | 0.506209 | 6_2:-45458936 | None:intergenic |
| CCAGGAGATTTCTTGAAAGC+CGG | 0.511009 | 6_2:-45458093 | None:intergenic |
| AGTGTCGCTCGCCGAGGCAC+CGG | 0.511077 | 6_2:+45458074 | Msa0918230:CDS |
| CCTGTTGACACAACTGGTGC+TGG | 0.514806 | 6_2:+45460196 | Msa0918230:CDS |
| TCTGCCGAGGCTGCTCGGAA+TGG | 0.518189 | 6_2:+45458980 | Msa0918230:CDS |
| AGATATACCAACAGCAACAT+TGG | 0.520400 | 6_2:-45458127 | None:intergenic |
| CCGGCTTTCAAGAAATCTCC+TGG | 0.521432 | 6_2:+45458093 | Msa0918230:CDS |
| ATTGTTACTGAAGGTTCTAA+GGG | 0.521507 | 6_2:+45459288 | Msa0918230:CDS |
| TTCACTGGTTGTTTCCTTTG+GGG | 0.525662 | 6_2:+45458017 | Msa0918230:CDS |
| AAACTCTTAATTGTTACTGA+AGG | 0.533841 | 6_2:+45459279 | Msa0918230:CDS |
| TGATAATATTTATGAATGAA+AGG | 0.533996 | 6_2:-45455834 | None:intergenic |
| CAGGAATTTCGAGGCAGGGT+TGG | 0.538929 | 6_2:+45460157 | Msa0918230:intron |
| GCATAAGGAAACAAGTTCAC+TGG | 0.539170 | 6_2:+45458002 | Msa0918230:CDS |
| TGATAGAGATCTCTTAAAGA+AGG | 0.540398 | 6_2:+45458731 | Msa0918230:CDS |
| TTTCTTGAAAGCCGGTGCCT+CGG | 0.540957 | 6_2:-45458085 | None:intergenic |
| TATGCCATTCCGAGCAGCCT+CGG | 0.547132 | 6_2:-45458984 | None:intergenic |
| GGCGTTATGGCCGTCTGCCG+AGG | 0.547928 | 6_2:+45458967 | Msa0918230:CDS |
| TTTCTTTACCTTAATGACAT+CGG | 0.550305 | 6_2:-45459026 | None:intergenic |
| AGCGACACTCCTCCCTCGGT+TGG | 0.553583 | 6_2:-45458060 | None:intergenic |
| ATTTCTGTGCAGGAATTTCG+AGG | 0.557516 | 6_2:+45460148 | Msa0918230:intron |
| ATACCAACAGCAACATTGGC+AGG | 0.561076 | 6_2:-45458123 | None:intergenic |
| GCTCCTGCCAATGTTGCTGT+TGG | 0.566054 | 6_2:+45458120 | Msa0918230:CDS |
| GTCTATCAACATTTCCCCAA+AGG | 0.569388 | 6_2:-45458031 | None:intergenic |
| TGAAGAAGCATATCAGCACT+TGG | 0.569500 | 6_2:-45458696 | None:intergenic |
| TTTGTCACACTTAGATCTGA+CGG | 0.572030 | 6_2:+45458645 | Msa0918230:CDS |
| TGTGCAGGAATTTCGAGGCA+GGG | 0.593911 | 6_2:+45460153 | Msa0918230:intron |
| GACTTTGTGCCAACCGAGGG+AGG | 0.594081 | 6_2:+45458051 | Msa0918230:CDS |
| ATAGACTTTGTGCCAACCGA+GGG | 0.596127 | 6_2:+45458048 | Msa0918230:CDS |
| ACATTGGCAGGAGCTCCACC+AGG | 0.606207 | 6_2:-45458111 | None:intergenic |
| GATAGACTTTGTGCCAACCG+AGG | 0.624087 | 6_2:+45458047 | Msa0918230:CDS |
| CATGTATATACAGATAAGTG+AGG | 0.626485 | 6_2:+45459176 | Msa0918230:intron |
| GTTGGTATATCTAAATTGGG+AGG | 0.634166 | 6_2:+45458138 | Msa0918230:CDS |
| GGGAGGAGTGTCGCTCGCCG+AGG | 0.640269 | 6_2:+45458068 | Msa0918230:CDS |
| GCTTTCAAGAAATCTCCTGG+TGG | 0.652256 | 6_2:+45458096 | Msa0918230:CDS |
| ATGTTGATACTTCTGGAATG+CGG | 0.653896 | 6_2:+45458592 | Msa0918230:CDS |
| GCAATGTGTGCTGATTTGCA+TGG | 0.668568 | 6_2:-45458884 | None:intergenic |
| GTATATACAGATAAGTGAGG+AGG | 0.677503 | 6_2:+45459179 | Msa0918230:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAATATTTATGAATGAA+AGG | - | chr6_2:45455837-45455856 | None:intergenic | 15.0% |
| !! | TTGAATAAAGAAGAAATTAA+TGG | - | chr6_2:45455875-45455894 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr6_2:45456723-45456742 | None:intergenic | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | - | chr6_2:45456763-45456782 | None:intergenic | 15.0% |
| !! | TACTATTAATAATACCAATT+TGG | - | chr6_2:45459833-45459852 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTTGAGAATTTTA+AGG | + | chr6_2:45456065-45456084 | Msa0918230:intron | 20.0% |
| !! | TCGAACTAATATCTATATAT+AGG | + | chr6_2:45456640-45456659 | Msa0918230:intron | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+AGG | + | chr6_2:45456841-45456860 | Msa0918230:intron | 20.0% |
| !!! | GTCTTTTTCTTATAAAGTAA+GGG | + | chr6_2:45456842-45456861 | Msa0918230:intron | 20.0% |
| !!! | TTTTCATATCAACTACTAAA+AGG | - | chr6_2:45457468-45457487 | None:intergenic | 20.0% |
| !!! | AGTAGTTGATATGAAAAATT+TGG | + | chr6_2:45457471-45457490 | Msa0918230:intron | 20.0% |
| !! | TCAATTCATGACTTAAAAAT+AGG | + | chr6_2:45458443-45458462 | Msa0918230:intron | 20.0% |
| !! | TTTGTTTATTTCATGAAATG+TGG | + | chr6_2:45458768-45458787 | Msa0918230:intron | 20.0% |
| !! | CAAAATCTAAATTAAACCAT+AGG | - | chr6_2:45458801-45458820 | None:intergenic | 20.0% |
| !!! | AACTTATTTAAAACCACATA+GGG | - | chr6_2:45459801-45459820 | None:intergenic | 20.0% |
| !!! | AAACTTATTTAAAACCACAT+AGG | - | chr6_2:45459802-45459821 | None:intergenic | 20.0% |
| !! | AAGTTTATGTTTATCCAAAT+TGG | + | chr6_2:45459816-45459835 | Msa0918230:intron | 20.0% |
| !! | ACTTATTTGAACATATCTAT+TGG | + | chr6_2:45459882-45459901 | Msa0918230:intron | 20.0% |
| !! | ATATTATCATCTACCCTTTT+CGG | + | chr6_2:45455848-45455867 | Msa0918230:five_prime_UTR | 25.0% |
| ! | TTAATAAAAAACAATGGAGG+TGG | - | chr6_2:45455973-45455992 | None:intergenic | 25.0% |
| ! | CCATTAATAAAAAACAATGG+AGG | - | chr6_2:45455976-45455995 | None:intergenic | 25.0% |
| !!! | CCTCCATTGTTTTTTATTAA+TGG | + | chr6_2:45455973-45455992 | Msa0918230:exon | 25.0% |
| ! | GAGCCATTAATAAAAAACAA+TGG | - | chr6_2:45455979-45455998 | None:intergenic | 25.0% |
| !!! | AGGATTTTATTTACCTATGT+TGG | + | chr6_2:45456085-45456104 | Msa0918230:intron | 25.0% |
| !!! | TAAATTTCTAGTTCCAACAT+AGG | - | chr6_2:45456101-45456120 | None:intergenic | 25.0% |
| ! | GAGAATAAGCAAAAACAAAT+GGG | + | chr6_2:45456338-45456357 | Msa0918230:intron | 25.0% |
| ! | ATCAACATTAGTTAGTTGAT+AGG | + | chr6_2:45456513-45456532 | Msa0918230:intron | 25.0% |
| ! | TTATGAATCATGGAATCATA+GGG | - | chr6_2:45457010-45457029 | None:intergenic | 25.0% |
| ! | ATTATGAATCATGGAATCAT+AGG | - | chr6_2:45457011-45457030 | None:intergenic | 25.0% |
| ! | TGATTGAATATACATTGATC+TGG | + | chr6_2:45457379-45457398 | Msa0918230:intron | 25.0% |
| !!! | AAAATTTGGTTCGATTTTAG+AGG | + | chr6_2:45457485-45457504 | Msa0918230:intron | 25.0% |
| ! | TCAAGATCATATAAAGTAAG+TGG | - | chr6_2:45457593-45457612 | None:intergenic | 25.0% |
| ! | ACTTTATATGATCTTGACTA+CGG | + | chr6_2:45457596-45457615 | Msa0918230:intron | 25.0% |
| !! | TTTAGGATTGAAATCGTATA+CGG | + | chr6_2:45457855-45457874 | Msa0918230:intron | 25.0% |
| ! | TTGTATACCATTGTTTATAC+TGG | + | chr6_2:45457928-45457947 | Msa0918230:intron | 25.0% |
| ! | AAACATGAACAAAATCTTGA+AGG | - | chr6_2:45458268-45458287 | None:intergenic | 25.0% |
| ! | ATGACTTAAAAATAGGTCTT+CGG | + | chr6_2:45458450-45458469 | Msa0918230:intron | 25.0% |
| ! | TTCCTTATTATCTCTGTATT+AGG | + | chr6_2:45458518-45458537 | Msa0918230:intron | 25.0% |
| ! | AACCTAATACAGAGATAATA+AGG | - | chr6_2:45458523-45458542 | None:intergenic | 25.0% |
| ! | TTATTATCTCTGTATTAGGT+TGG | + | chr6_2:45458522-45458541 | Msa0918230:intron | 25.0% |
| !!! | ATTGTTCTGCTTTAGAATAT+CGG | - | chr6_2:45458574-45458593 | None:intergenic | 25.0% |
| !!! | GATGATAACATTGATTTTTC+AGG | + | chr6_2:45458820-45458839 | Msa0918230:intron | 25.0% |
| ! | TTAAACTAATTGAGCCATAA+TGG | - | chr6_2:45458856-45458875 | None:intergenic | 25.0% |
| !! | ATATGATCCGAATTTAAGAT+TGG | + | chr6_2:45458946-45458965 | Msa0918230:CDS | 25.0% |
| ! | TTTCTTTACCTTAATGACAT+CGG | - | chr6_2:45459029-45459048 | None:intergenic | 25.0% |
| ! | AAATTATACACATGATGTAG+TGG | + | chr6_2:45459046-45459065 | Msa0918230:intron | 25.0% |
| !!! | TTTTTTCTAGTGAGCTTAAT+CGG | + | chr6_2:45459089-45459108 | Msa0918230:intron | 25.0% |
| ! | TACATGAAAAATACAACATC+AGG | - | chr6_2:45459162-45459181 | None:intergenic | 25.0% |
| ! | AAAACAACATCATCATCATT+AGG | - | chr6_2:45459234-45459253 | None:intergenic | 25.0% |
| ! | AAACTCTTAATTGTTACTGA+AGG | + | chr6_2:45459279-45459298 | Msa0918230:CDS | 25.0% |
| ! | ATGCAAATAATTGATTGTCA+TGG | + | chr6_2:45459454-45459473 | Msa0918230:intron | 25.0% |
| !! | ACTTATTTAAAACCACATAG+GGG | - | chr6_2:45459800-45459819 | None:intergenic | 25.0% |
| !! | TTTTTCTTCATAAACTCTGT+AGG | + | chr6_2:45459962-45459981 | Msa0918230:intron | 25.0% |
| ! | AGAAATTAATGGACCGAAAA+GGG | - | chr6_2:45455864-45455883 | None:intergenic | 30.0% |
| ! | AAGAAATTAATGGACCGAAA+AGG | - | chr6_2:45455865-45455884 | None:intergenic | 30.0% |
| AAAGAAGAAAAAACCTGATG+GGG | - | chr6_2:45456011-45456030 | None:intergenic | 30.0% | |
| GAAAGAAGAAAAAACCTGAT+GGG | - | chr6_2:45456012-45456031 | None:intergenic | 30.0% | |
| AGAAAGAAGAAAAAACCTGA+TGG | - | chr6_2:45456013-45456032 | None:intergenic | 30.0% | |
| CGAGAATAAGCAAAAACAAA+TGG | + | chr6_2:45456337-45456356 | Msa0918230:intron | 30.0% | |
| GTTAACTAGAGTTAATAGCT+TGG | + | chr6_2:45456535-45456554 | Msa0918230:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr6_2:45456697-45456716 | None:intergenic | 30.0% |
| AAATTGTGTGAGAGAAAAGT+TGG | - | chr6_2:45456803-45456822 | None:intergenic | 30.0% | |
| !!! | TTCAAAATGAGTGTCACTTT+TGG | - | chr6_2:45456932-45456951 | None:intergenic | 30.0% |
| !! | AAGTGACACTCATTTTGAAA+CGG | + | chr6_2:45456933-45456952 | Msa0918230:intron | 30.0% |
| TTGTGGTCTATTATGAATCA+TGG | - | chr6_2:45457020-45457039 | None:intergenic | 30.0% | |
| TGATTCATAATAGACCACAA+AGG | + | chr6_2:45457020-45457039 | Msa0918230:intron | 30.0% | |
| ATTACGAATCATGGAATCAT+AGG | - | chr6_2:45457047-45457066 | None:intergenic | 30.0% | |
| ATCAACGTAAAGTGTATAAG+TGG | - | chr6_2:45457363-45457382 | None:intergenic | 30.0% | |
| GACTATCAATGACTAAAGAA+AGG | - | chr6_2:45457425-45457444 | None:intergenic | 30.0% | |
| TTAACAGCTTATATGAGAAC+AGG | + | chr6_2:45457698-45457717 | Msa0918230:intron | 30.0% | |
| CTTATATGAGAACAGGTTTA+TGG | + | chr6_2:45457705-45457724 | Msa0918230:intron | 30.0% | |
| ACGATTTCAATCCTAAATGT+TGG | - | chr6_2:45457852-45457871 | None:intergenic | 30.0% | |
| GCTTTAACCAGTATAAACAA+TGG | - | chr6_2:45457938-45457957 | None:intergenic | 30.0% | |
| !!! | CTCTTCTTTTCTAAGATCAT+TGG | - | chr6_2:45457983-45458002 | None:intergenic | 30.0% |
| ! | TCTTAGAAAAGAAGAGCATA+AGG | + | chr6_2:45457987-45458006 | Msa0918230:CDS | 30.0% |
| TGCTGTTGGTATATCTAAAT+TGG | + | chr6_2:45458134-45458153 | Msa0918230:CDS | 30.0% | |
| GCTGTTGGTATATCTAAATT+GGG | + | chr6_2:45458135-45458154 | Msa0918230:CDS | 30.0% | |
| TGATAGAGATCTCTTAAAGA+AGG | + | chr6_2:45458731-45458750 | Msa0918230:CDS | 30.0% | |
| CATAACGCCAATCTTAAATT+CGG | - | chr6_2:45458956-45458975 | None:intergenic | 30.0% | |
| GAATGGCATAATGAGTATAT+GGG | + | chr6_2:45458997-45459016 | Msa0918230:CDS | 30.0% | |
| CATGTATATACAGATAAGTG+AGG | + | chr6_2:45459176-45459195 | Msa0918230:intron | 30.0% | |
| !! | GAGATTACATTTTTGACTGA+AGG | + | chr6_2:45459201-45459220 | Msa0918230:CDS | 30.0% |
| AATTGTTACTGAAGGTTCTA+AGG | + | chr6_2:45459287-45459306 | Msa0918230:CDS | 30.0% | |
| ! | ATTGTTACTGAAGGTTCTAA+GGG | + | chr6_2:45459288-45459307 | Msa0918230:CDS | 30.0% |
| CTTTAGATTGAAGTTGTGAT+CGG | - | chr6_2:45459523-45459542 | None:intergenic | 30.0% | |
| TCAGATAACTAATAGTAGGA+CGG | - | chr6_2:45459549-45459568 | None:intergenic | 30.0% | |
| GAGATCAGATAACTAATAGT+AGG | - | chr6_2:45459553-45459572 | None:intergenic | 30.0% | |
| ! | AATTTAACTTCCCCTGAAAT+AGG | - | chr6_2:45459674-45459693 | None:intergenic | 30.0% |
| TAATATTACTTTCCCCTATG+TGG | + | chr6_2:45459785-45459804 | Msa0918230:intron | 30.0% | |
| TTAAGCTATCTATCCAAACA+TGG | + | chr6_2:45460105-45460124 | Msa0918230:intron | 30.0% | |
| AATTTGGCACCACAATTATT+AGG | - | chr6_2:45460131-45460150 | None:intergenic | 30.0% | |
| AGACAAAGTTTGCATCTTTG+TGG | + | chr6_2:45456121-45456140 | Msa0918230:intron | 35.0% | |
| GACAAAGTTTGCATCTTTGT+GGG | + | chr6_2:45456122-45456141 | Msa0918230:intron | 35.0% | |
| ACAAAGTTTGCATCTTTGTG+GGG | + | chr6_2:45456123-45456142 | Msa0918230:intron | 35.0% | |
| !!! | TTTGTGGGGTTTTGGATTAT+GGG | + | chr6_2:45456137-45456156 | Msa0918230:intron | 35.0% |
| AATACAAGTTAACTCACGCT+CGG | - | chr6_2:45456259-45456278 | None:intergenic | 35.0% | |
| AACAAATGGGATAAGACAAG+AGG | + | chr6_2:45456351-45456370 | Msa0918230:intron | 35.0% | |
| !!! | TGTGTCCTTTTTTTCCAGAT+TGG | + | chr6_2:45456418-45456437 | Msa0918230:intron | 35.0% |
| !!! | GTGTCCTTTTTTTCCAGATT+GGG | + | chr6_2:45456419-45456438 | Msa0918230:intron | 35.0% |
| AGCTAGGATTATGCGTTATT+GGG | - | chr6_2:45456464-45456483 | None:intergenic | 35.0% | |
| TAGCTAGGATTATGCGTTAT+TGG | - | chr6_2:45456465-45456484 | None:intergenic | 35.0% | |
| GCATAATCCTAGCTAGATTA+GGG | + | chr6_2:45456470-45456489 | Msa0918230:intron | 35.0% | |
| ATATAGTCCCTAATCTAGCT+AGG | - | chr6_2:45456480-45456499 | None:intergenic | 35.0% | |
| AGTACTCGAACATAAACAAC+TGG | + | chr6_2:45456567-45456586 | Msa0918230:intron | 35.0% | |
| AACAACTGGAGTTAGTTGAT+TGG | + | chr6_2:45456581-45456600 | Msa0918230:intron | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | - | chr6_2:45456907-45456926 | None:intergenic | 35.0% | |
| ATTCCTTAATCTGTGTGCAA+TGG | + | chr6_2:45456906-45456925 | Msa0918230:intron | 35.0% | |
| TTGTGGTCTATTACGAATCA+TGG | - | chr6_2:45457056-45457075 | None:intergenic | 35.0% | |
| TGATTCGTAATAGACCACAA+AGG | + | chr6_2:45457056-45457075 | Msa0918230:intron | 35.0% | |
| ATCATTGGAGATTTCCTCAA+CGG | - | chr6_2:45457130-45457149 | None:intergenic | 35.0% | |
| AACAACAAATGCGAGATCAT+TGG | - | chr6_2:45457145-45457164 | None:intergenic | 35.0% | |
| !! | AATGATCTCGCATTTGTTGT+TGG | + | chr6_2:45457144-45457163 | Msa0918230:intron | 35.0% |
| !! | ATGATCTCGCATTTGTTGTT+GGG | + | chr6_2:45457145-45457164 | Msa0918230:intron | 35.0% |
| !! | CATTTGTTGTTGGGTTTCAT+GGG | + | chr6_2:45457154-45457173 | Msa0918230:intron | 35.0% |
| ATATGAGCTCCCCTATATAA+AGG | + | chr6_2:45457186-45457205 | Msa0918230:intron | 35.0% | |
| TACGCAACCACCTTTATATA+GGG | - | chr6_2:45457199-45457218 | None:intergenic | 35.0% | |
| TCTTCTATCGAATTCTCTGT+AGG | + | chr6_2:45457263-45457282 | Msa0918230:intron | 35.0% | |
| !! | TTTGGTTCGATTTTAGAGGA+CGG | + | chr6_2:45457489-45457508 | Msa0918230:intron | 35.0% |
| ACACATCATGTAGTTACACA+AGG | + | chr6_2:45457554-45457573 | Msa0918230:intron | 35.0% | |
| TGAACTACTGATGCATTTCA+TGG | + | chr6_2:45457666-45457685 | Msa0918230:intron | 35.0% | |
| ATATGAGAACAGGTTTATGG+TGG | + | chr6_2:45457708-45457727 | Msa0918230:intron | 35.0% | |
| TAACCTATGAAACACTGACA+CGG | - | chr6_2:45457890-45457909 | None:intergenic | 35.0% | |
| AGATATACCAACAGCAACAT+TGG | - | chr6_2:45458130-45458149 | None:intergenic | 35.0% | |
| GTTGGTATATCTAAATTGGG+AGG | + | chr6_2:45458138-45458157 | Msa0918230:CDS | 35.0% | |
| !! | TTCATCTGCTTTTATAGGCA+AGG | + | chr6_2:45458161-45458180 | Msa0918230:CDS | 35.0% |
| AGACGAATTTGGTTACATGT+TGG | + | chr6_2:45458548-45458567 | Msa0918230:intron | 35.0% | |
| CAGAACAATGTTGATACTTC+TGG | + | chr6_2:45458585-45458604 | Msa0918230:intron | 35.0% | |
| !! | ATGTTGATACTTCTGGAATG+CGG | + | chr6_2:45458592-45458611 | Msa0918230:CDS | 35.0% |
| TTTGTCACACTTAGATCTGA+CGG | + | chr6_2:45458645-45458664 | Msa0918230:CDS | 35.0% | |
| ! | CAGGCTAGAATTTTCCATTA+TGG | + | chr6_2:45458839-45458858 | Msa0918230:intron | 35.0% |
| ATGAAGATTGCCAAAAGTTC+TGG | + | chr6_2:45458911-45458930 | Msa0918230:CDS | 35.0% | |
| ATTCGGATCATATGAGAGAA+TGG | - | chr6_2:45458939-45458958 | None:intergenic | 35.0% | |
| ! | CGAATTTAAGATTGGCGTTA+TGG | + | chr6_2:45458954-45458973 | Msa0918230:CDS | 35.0% |
| GGAATGGCATAATGAGTATA+TGG | + | chr6_2:45458996-45459015 | Msa0918230:CDS | 35.0% | |
| GTATATACAGATAAGTGAGG+AGG | + | chr6_2:45459179-45459198 | Msa0918230:intron | 35.0% | |
| ! | GGGTTGTAGATTTTACACAA+AGG | + | chr6_2:45459308-45459327 | Msa0918230:CDS | 35.0% |
| TATGATGTCACATGTCTTGT+TGG | + | chr6_2:45459354-45459373 | Msa0918230:intron | 35.0% | |
| !! | AAACTATTACTGATTCGACG+TGG | - | chr6_2:45459428-45459447 | None:intergenic | 35.0% |
| GTTATCTGATCTCAAAACAG+TGG | + | chr6_2:45459560-45459579 | Msa0918230:intron | 35.0% | |
| CGTACGAAAAAGTCCTTATA+AGG | + | chr6_2:45459639-45459658 | Msa0918230:intron | 35.0% | |
| TAGGCATCTACAACCTTATA+AGG | - | chr6_2:45459655-45459674 | None:intergenic | 35.0% | |
| TAAACTCTGTAGGATAGCTT+AGG | + | chr6_2:45459972-45459991 | Msa0918230:intron | 35.0% | |
| CACAATTATTAGGCCATGTT+TGG | - | chr6_2:45460121-45460140 | None:intergenic | 35.0% | |
| CAAACATGGCCTAATAATTG+TGG | + | chr6_2:45460119-45460138 | Msa0918230:intron | 35.0% | |
| GAAATTCCTGCACAGAAATT+TGG | - | chr6_2:45460147-45460166 | None:intergenic | 35.0% | |
| ! | TTTGCATCTTTGTGGGGTTT+TGG | + | chr6_2:45456129-45456148 | Msa0918230:intron | 40.0% |
| !!! | CTTTGTGGGGTTTTGGATTA+TGG | + | chr6_2:45456136-45456155 | Msa0918230:intron | 40.0% |
| GGGAATGAGCAATTCTAACT+GGG | - | chr6_2:45456225-45456244 | None:intergenic | 40.0% | |
| !!! | TCACGCTCGGCTTTTTTTAT+GGG | - | chr6_2:45456246-45456265 | None:intergenic | 40.0% |
| CGCATAATCCTAGCTAGATT+AGG | + | chr6_2:45456469-45456488 | Msa0918230:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr6_2:45456937-45456956 | None:intergenic | 40.0% |
| AAAGTTGGAGAGGGTAAAGT+TGG | - | chr6_2:45456788-45456807 | None:intergenic | 40.0% | |
| TGTGAGAGAAAAGTTGGAGA+GGG | - | chr6_2:45456797-45456816 | None:intergenic | 40.0% | |
| !!! | TGACACTCATTTTGAAACGG+AGG | + | chr6_2:45456936-45456955 | Msa0918230:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr6_2:45456937-45456956 | Msa0918230:intron | 40.0% |
| ATGGAATCATAGGTCCTTTG+TGG | - | chr6_2:45457037-45457056 | None:intergenic | 40.0% | |
| ! | AAAGGTCATCTCTGTCGATT+AGG | + | chr6_2:45457103-45457122 | Msa0918230:intron | 40.0% |
| !! | GCATTTGTTGTTGGGTTTCA+TGG | + | chr6_2:45457153-45457172 | Msa0918230:intron | 40.0% |
| ACGCAACCACCTTTATATAG+GGG | - | chr6_2:45457198-45457217 | None:intergenic | 40.0% | |
| GTACGCAACCACCTTTATAT+AGG | - | chr6_2:45457200-45457219 | None:intergenic | 40.0% | |
| GATAGAAGAGTCAGTGAAAG+TGG | - | chr6_2:45457252-45457271 | None:intergenic | 40.0% | |
| ! | TAAGTGGTTTTCCAATGCGA+TGG | - | chr6_2:45457347-45457366 | None:intergenic | 40.0% |
| AAAGAAAGGCAAACGTGATC+TGG | - | chr6_2:45457411-45457430 | None:intergenic | 40.0% | |
| ! | TGCATTTTTGCCACTAATGC+AGG | - | chr6_2:45457624-45457643 | None:intergenic | 40.0% |
| GTGGCAAAAATGCAAGTATC+TGG | + | chr6_2:45457630-45457649 | Msa0918230:intron | 40.0% | |
| TTCATAGTGTCGTCAGTAAG+AGG | - | chr6_2:45457780-45457799 | None:intergenic | 40.0% | |
| ATACCGTGTCAGTGTTTCAT+AGG | + | chr6_2:45457884-45457903 | Msa0918230:intron | 40.0% | |
| GCATAAGGAAACAAGTTCAC+TGG | + | chr6_2:45458002-45458021 | Msa0918230:CDS | 40.0% | |
| ! | AGTTCACTGGTTGTTTCCTT+TGG | + | chr6_2:45458015-45458034 | Msa0918230:CDS | 40.0% |
| ! | GTTCACTGGTTGTTTCCTTT+GGG | + | chr6_2:45458016-45458035 | Msa0918230:CDS | 40.0% |
| ! | TTCACTGGTTGTTTCCTTTG+GGG | + | chr6_2:45458017-45458036 | Msa0918230:CDS | 40.0% |
| GTCTATCAACATTTCCCCAA+AGG | - | chr6_2:45458034-45458053 | None:intergenic | 40.0% | |
| !! | GGAGGTTCATCTGCTTTTAT+AGG | + | chr6_2:45458156-45458175 | Msa0918230:CDS | 40.0% |
| ! | TGAAGAAGCATATCAGCACT+TGG | - | chr6_2:45458699-45458718 | None:intergenic | 40.0% |
| GAAATGTGGTTCAAGACCTA+TGG | + | chr6_2:45458782-45458801 | Msa0918230:intron | 40.0% | |
| ! | GAGAATGGAACCAGAACTTT+TGG | - | chr6_2:45458924-45458943 | None:intergenic | 40.0% |
| GCTAATCCAAACAACACCTT+AGG | - | chr6_2:45459588-45459607 | None:intergenic | 40.0% | |
| AGGTTGTAGATGCCTATTTC+AGG | + | chr6_2:45459659-45459678 | Msa0918230:intron | 40.0% | |
| GGTTGTAGATGCCTATTTCA+GGG | + | chr6_2:45459660-45459679 | Msa0918230:intron | 40.0% | |
| GTTGTAGATGCCTATTTCAG+GGG | + | chr6_2:45459661-45459680 | Msa0918230:intron | 40.0% | |
| ATTTCTGTGCAGGAATTTCG+AGG | + | chr6_2:45460148-45460167 | Msa0918230:intron | 40.0% | |
| GTTAAACCTGTTGACACAAC+TGG | + | chr6_2:45460190-45460209 | Msa0918230:CDS | 40.0% | |
| GGGGAATGAGCAATTCTAAC+TGG | - | chr6_2:45456226-45456245 | None:intergenic | 45.0% | |
| !!! | CACGCTCGGCTTTTTTTATG+GGG | - | chr6_2:45456245-45456264 | None:intergenic | 45.0% |
| !!! | CTCACGCTCGGCTTTTTTTA+TGG | - | chr6_2:45456247-45456266 | None:intergenic | 45.0% |
| CAGCTTGAGTTAACTCACGT+AGG | + | chr6_2:45456313-45456332 | Msa0918230:intron | 45.0% | |
| GTGGCCCAATCTGGAAAAAA+AGG | - | chr6_2:45456426-45456445 | None:intergenic | 45.0% | |
| ACATGTATTGTGGCCCAATC+TGG | - | chr6_2:45456435-45456454 | None:intergenic | 45.0% | |
| AGGATTATGCGTTATTGGGC+CGG | - | chr6_2:45456460-45456479 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr6_2:45456694-45456713 | None:intergenic | 45.0% |
| GTGTGAGAGAAAAGTTGGAG+AGG | - | chr6_2:45456798-45456817 | None:intergenic | 45.0% | |
| TGGCCATTGCACACAGATTA+AGG | - | chr6_2:45456912-45456931 | None:intergenic | 45.0% | |
| ! | GACAGAGATGACCTTTTGTG+CGG | - | chr6_2:45457099-45457118 | None:intergenic | 45.0% |
| GTTGTTGGGTTTCATGGGAA+CGG | + | chr6_2:45457159-45457178 | Msa0918230:intron | 45.0% | |
| TGAGCTCCCCTATATAAAGG+TGG | + | chr6_2:45457189-45457208 | Msa0918230:intron | 45.0% | |
| ! | TGCGTAACTTGTCCTTGCAA+TGG | - | chr6_2:45457222-45457241 | None:intergenic | 45.0% |
| GTTCACTGCAGAGGAGAAAT+CGG | - | chr6_2:45457314-45457333 | None:intergenic | 45.0% | |
| TTTCTCCTCTGCAGTGAACT+AGG | + | chr6_2:45457315-45457334 | Msa0918230:intron | 45.0% | |
| !! | GTTCGATTTTAGAGGACGGT+GGG | + | chr6_2:45457493-45457512 | Msa0918230:intron | 45.0% |
| !! | TTCGATTTTAGAGGACGGTG+GGG | + | chr6_2:45457494-45457513 | Msa0918230:intron | 45.0% |
| TACTAGCGACGCCAACATTT+AGG | + | chr6_2:45457838-45457857 | Msa0918230:intron | 45.0% | |
| ATAGACTTTGTGCCAACCGA+GGG | + | chr6_2:45458048-45458067 | Msa0918230:CDS | 45.0% | |
| CCAGGAGATTTCTTGAAAGC+CGG | - | chr6_2:45458096-45458115 | None:intergenic | 45.0% | |
| GCTTTCAAGAAATCTCCTGG+TGG | + | chr6_2:45458096-45458115 | Msa0918230:CDS | 45.0% | |
| ATACCAACAGCAACATTGGC+AGG | - | chr6_2:45458126-45458145 | None:intergenic | 45.0% | |
| ! | TAGGTTGGAGCAGACGAATT+TGG | + | chr6_2:45458537-45458556 | Msa0918230:intron | 45.0% |
| !!! | AGCGCGAGTTCTTGTTTTTC+CGG | + | chr6_2:45458670-45458689 | Msa0918230:CDS | 45.0% |
| GCATATCAGCACTTGGATTC+CGG | - | chr6_2:45458692-45458711 | None:intergenic | 45.0% | |
| !! | GCAATGTGTGCTGATTTGCA+TGG | - | chr6_2:45458887-45458906 | None:intergenic | 45.0% |
| GGATCAAGCCGATGTCATTA+AGG | + | chr6_2:45459018-45459037 | Msa0918230:CDS | 45.0% | |
| TCCAAGCTCATTGTCTCTGT+CGG | - | chr6_2:45459395-45459414 | None:intergenic | 45.0% | |
| TGGATGTGTCAGTGTTGTGT+CGG | + | chr6_2:45459474-45459493 | Msa0918230:intron | 45.0% | |
| GATTGAAGTTGTGATCGGTG+CGG | - | chr6_2:45459518-45459537 | None:intergenic | 45.0% | |
| TCTCAAAACAGTGGTGCCTA+AGG | + | chr6_2:45459569-45459588 | Msa0918230:intron | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | + | chr6_2:45460214-45460233 | Msa0918230:CDS | 45.0% |
| GCTCACTCTAATACCCCATC+AGG | + | chr6_2:45455995-45456014 | Msa0918230:CDS | 50.0% | |
| TGGGCCACAATACATGTCAC+CGG | + | chr6_2:45456438-45456457 | Msa0918230:intron | 50.0% | |
| ! | TCTGTCGATTAGGACCGTTG+AGG | + | chr6_2:45457113-45457132 | Msa0918230:intron | 50.0% |
| !! | GGCAGAGGCATTTCTCTACA+GGG | - | chr6_2:45457293-45457312 | None:intergenic | 50.0% |
| GCTATCCTAGTTCACTGCAG+AGG | - | chr6_2:45457323-45457342 | None:intergenic | 50.0% | |
| CTAGGATAGCTCCATCGCAT+TGG | + | chr6_2:45457333-45457352 | Msa0918230:intron | 50.0% | |
| !! | GGTTCGATTTTAGAGGACGG+TGG | + | chr6_2:45457492-45457511 | Msa0918230:intron | 50.0% |
| GACTACGGATCCTGCATTAG+TGG | + | chr6_2:45457611-45457630 | Msa0918230:intron | 50.0% | |
| GATAGACTTTGTGCCAACCG+AGG | + | chr6_2:45458047-45458066 | Msa0918230:CDS | 50.0% | |
| TTTCTTGAAAGCCGGTGCCT+CGG | - | chr6_2:45458088-45458107 | None:intergenic | 50.0% | |
| CCGGCTTTCAAGAAATCTCC+TGG | + | chr6_2:45458093-45458112 | Msa0918230:CDS | 50.0% | |
| ACCGACAGAGACAATGAGCT+TGG | + | chr6_2:45459391-45459410 | Msa0918230:intron | 50.0% | |
| !! | GTGGTGCCTAAGGTGTTGTT+TGG | + | chr6_2:45459579-45459598 | Msa0918230:intron | 50.0% |
| ! | GTGGTGCCAAATTTCTGTGC+AGG | + | chr6_2:45460138-45460157 | Msa0918230:intron | 50.0% |
| TGTGCAGGAATTTCGAGGCA+GGG | + | chr6_2:45460153-45460172 | Msa0918230:intron | 50.0% | |
| TGGGCCGGTGACATGTATTG+TGG | - | chr6_2:45456445-45456464 | None:intergenic | 55.0% | |
| AGCGCACGAGAGATCCTTTG+TGG | - | chr6_2:45457073-45457092 | None:intergenic | 55.0% | |
| CAAAGGATCTCTCGTGCGCT+TGG | + | chr6_2:45457073-45457092 | Msa0918230:intron | 55.0% | |
| GGTGGTTGCGTACCATTGCA+AGG | + | chr6_2:45457207-45457226 | Msa0918230:intron | 55.0% | |
| !! | CGGCAGAGGCATTTCTCTAC+AGG | - | chr6_2:45457294-45457313 | None:intergenic | 55.0% |
| TGCAGAGGAGAAATCGGCAG+AGG | - | chr6_2:45457308-45457327 | None:intergenic | 55.0% | |
| GCTCCTGCCAATGTTGCTGT+TGG | + | chr6_2:45458120-45458139 | Msa0918230:CDS | 55.0% | |
| TATGCCATTCCGAGCAGCCT+CGG | - | chr6_2:45458987-45459006 | None:intergenic | 55.0% | |
| CTGTGCAGGAATTTCGAGGC+AGG | + | chr6_2:45460152-45460171 | Msa0918230:intron | 55.0% | |
| CAGGAATTTCGAGGCAGGGT+TGG | + | chr6_2:45460157-45460176 | Msa0918230:intron | 55.0% | |
| GAATTTCGAGGCAGGGTTGG+AGG | + | chr6_2:45460160-45460179 | Msa0918230:CDS | 55.0% | |
| CCAGCACCAGTTGTGTCAAC+AGG | - | chr6_2:45460199-45460218 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | + | chr6_2:45460196-45460215 | Msa0918230:CDS | 55.0% | |
| GACTTTGTGCCAACCGAGGG+AGG | + | chr6_2:45458051-45458070 | Msa0918230:CDS | 60.0% | |
| ACATTGGCAGGAGCTCCACC+AGG | - | chr6_2:45458114-45458133 | None:intergenic | 60.0% | |
| CGTGCGCTTGGCCGCACAAA+AGG | + | chr6_2:45457085-45457104 | Msa0918230:intron | 65.0% | |
| AGCGACACTCCTCCCTCGGT+TGG | - | chr6_2:45458063-45458082 | None:intergenic | 65.0% | |
| TTCCGAGCAGCCTCGGCAGA+CGG | - | chr6_2:45458980-45458999 | None:intergenic | 65.0% | |
| TCTGCCGAGGCTGCTCGGAA+TGG | + | chr6_2:45458980-45458999 | Msa0918230:CDS | 65.0% | |
| GGCGAGCGACACTCCTCCCT+CGG | - | chr6_2:45458067-45458086 | None:intergenic | 70.0% | |
| ! | AGTGTCGCTCGCCGAGGCAC+CGG | + | chr6_2:45458074-45458093 | Msa0918230:CDS | 70.0% |
| GGCGTTATGGCCGTCTGCCG+AGG | + | chr6_2:45458967-45458986 | Msa0918230:CDS | 70.0% | |
| !! | GGGAGGAGTGTCGCTCGCCG+AGG | + | chr6_2:45458068-45458087 | Msa0918230:CDS | 75.0% |
| GGCCGTCTGCCGAGGCTGCT+CGG | + | chr6_2:45458975-45458994 | Msa0918230:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 45455764 | 45460255 | 45455764 | ID=Msa0918230;Name=Msa0918230 |
| chr6_2 | mRNA | 45455764 | 45460255 | 45455764 | ID=Msa0918230-mRNA-1;Parent=Msa0918230;Name=Msa0918230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=228|0.8|0.66|1|1|0.83|6|0|278 |
| chr6_2 | exon | 45455764 | 45456016 | 45455764 | ID=Msa0918230-mRNA-1:exon:7110;Parent=Msa0918230-mRNA-1 |
| chr6_2 | exon | 45457974 | 45458182 | 45457974 | ID=Msa0918230-mRNA-1:exon:7111;Parent=Msa0918230-mRNA-1 |
| chr6_2 | exon | 45458588 | 45458752 | 45458588 | ID=Msa0918230-mRNA-1:exon:7112;Parent=Msa0918230-mRNA-1 |
| chr6_2 | exon | 45458842 | 45459039 | 45458842 | ID=Msa0918230-mRNA-1:exon:7113;Parent=Msa0918230-mRNA-1 |
| chr6_2 | exon | 45459189 | 45459329 | 45459189 | ID=Msa0918230-mRNA-1:exon:7114;Parent=Msa0918230-mRNA-1 |
| chr6_2 | exon | 45460160 | 45460255 | 45460160 | ID=Msa0918230-mRNA-1:exon:7115;Parent=Msa0918230-mRNA-1 |
| chr6_2 | five_prime_UTR | 45455764 | 45455991 | 45455764 | ID=Msa0918230-mRNA-1:five_prime_utr;Parent=Msa0918230-mRNA-1 |
| chr6_2 | CDS | 45455992 | 45456016 | 45455992 | ID=Msa0918230-mRNA-1:cds;Parent=Msa0918230-mRNA-1 |
| chr6_2 | CDS | 45457974 | 45458182 | 45457974 | ID=Msa0918230-mRNA-1:cds;Parent=Msa0918230-mRNA-1 |
| chr6_2 | CDS | 45458588 | 45458752 | 45458588 | ID=Msa0918230-mRNA-1:cds;Parent=Msa0918230-mRNA-1 |
| chr6_2 | CDS | 45458842 | 45459039 | 45458842 | ID=Msa0918230-mRNA-1:cds;Parent=Msa0918230-mRNA-1 |
| chr6_2 | CDS | 45459189 | 45459329 | 45459189 | ID=Msa0918230-mRNA-1:cds;Parent=Msa0918230-mRNA-1 |
| chr6_2 | CDS | 45460160 | 45460255 | 45460160 | ID=Msa0918230-mRNA-1:cds;Parent=Msa0918230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
