AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249580 MtrunA17_Chr2g0305121 99.571 233 1 0 1 233 1 233 1.08e-168 464
Msa0249580 MtrunA17_Chr4g0008681 95.279 233 11 0 1 233 1 233 1.17e-139 391
Msa0249580 MtrunA17_Chr5g0441161 57.576 231 90 3 1 231 1 223 4.26e-81 242
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249580 AT2G18110.1 80.531 226 43 1 7 231 6 231 4.88e-112 321
Msa0249580 AT1G30230.2 79.825 228 45 1 7 233 6 233 7.60e-110 316
Msa0249580 AT1G30230.1 79.646 226 45 1 7 231 6 231 4.55e-108 311
Msa0249580 AT5G12110.1 60.000 235 83 3 1 231 1 228 4.07e-79 237
Msa0249580 AT5G19510.1 58.009 231 90 2 1 231 1 224 1.44e-72 221

Find 59 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACTATAGTGGTGTTTC+TGG 0.119961 2_2:-36640454 Msa0249580:intron
TTCAGTTGGAAGGGTTGTTT+TGG 0.210487 2_2:-36640050 Msa0249580:CDS
TCAGTTCCATCATATGAATA+TGG 0.245099 2_2:-36640651 Msa0249580:CDS
AAGTGAGAGTGAATTGAAAA+AGG 0.250665 2_2:+36641328 None:intergenic
TCTTGTTTCCGTTGACAATA+TGG 0.314177 2_2:-36639325 Msa0249580:CDS
GCAGCCTTTGTGTCAGAAAC+TGG 0.339173 2_2:+36640370 None:intergenic
GCAGCAGCCGTGAAGGCATC+TGG 0.384826 2_2:-36640265 Msa0249580:CDS
GAAGAAGGCAGCTGAGGAAC+GGG 0.395604 2_2:-36640287 Msa0249580:CDS
TATAACCTTAAGGCTGAATC+TGG 0.399774 2_2:-36640871 Msa0249580:CDS
GATGACGATGTTGATTTGTT+TGG 0.412687 2_2:-36640328 Msa0249580:CDS
TCAAATTATGCTTACTATTG+TGG 0.416944 2_2:-36639352 Msa0249580:CDS
TCAAACCAGATTCAGCCTTA+AGG 0.419155 2_2:+36640866 None:intergenic
TAGCCAAACTTGTTCCTGTT+GGG 0.428630 2_2:-36639392 Msa0249580:CDS
GGTGTTTCTGGTGAGGGATC+TGG 0.436594 2_2:-36640442 Msa0249580:CDS
GTACCCAACAGGAACAAGTT+TGG 0.443426 2_2:+36639389 None:intergenic
ACTCTGGACATACTCATTGA+TGG 0.454225 2_2:+36639278 None:intergenic
TTCTTGATACCGTACCCAAC+AGG 0.456829 2_2:+36639378 None:intergenic
CAGTTCCATCATATGAATAT+GGG 0.459928 2_2:-36640650 Msa0249580:CDS
TGGGAAATCATCTGTATTGT+TGG 0.466041 2_2:-36640133 Msa0249580:CDS
TTCCGTTGACAATATGGTTG+AGG 0.479405 2_2:-36639319 Msa0249580:CDS
AGTTACACTCTATAACCTTA+AGG 0.486396 2_2:-36640881 Msa0249580:CDS
TTCTTCAAGCTTCTTCATGT+CGG 0.497830 2_2:+36640086 None:intergenic
AGCAGTGAGATCTGTTCAGT+TGG 0.499725 2_2:-36640064 Msa0249580:CDS
ACATTCCCATATTCATATGA+TGG 0.500557 2_2:+36640645 None:intergenic
TGATGTCATCCTTTGAAGCT+TGG 0.506163 2_2:+36640694 None:intergenic
GTGAGATCTGTTCAGTTGGA+AGG 0.509565 2_2:-36640060 Msa0249580:CDS
ATAGCCAAACTTGTTCCTGT+TGG 0.511083 2_2:-36639393 Msa0249580:intron
AGAAGAAGGCAGCTGAGGAA+CGG 0.514292 2_2:-36640288 Msa0249580:CDS
AAACTTGTTCCTGTTGGGTA+CGG 0.517929 2_2:-36639387 Msa0249580:CDS
TATTCATATGATGGAACTGA+TGG 0.520528 2_2:+36640654 None:intergenic
AGAGACTGAGGAAGAGAAGA+AGG 0.523236 2_2:-36640302 Msa0249580:CDS
CTTACACGCAGTTACATCAC+TGG 0.529989 2_2:-36640823 Msa0249580:CDS
AAGAGAGGCGAGGAGATTGA+AGG 0.541739 2_2:+36641278 None:intergenic
CTCTGGACATACTCATTGAT+GGG 0.544249 2_2:+36639279 None:intergenic
TGATGTAACTGCGTGTAAGA+AGG 0.549903 2_2:+36640827 None:intergenic
GTGTAGGTACCAAGCTTCAA+AGG 0.552158 2_2:-36640703 Msa0249580:intron
ATGTCGGTCTCATCATCCCA+TGG 0.564640 2_2:+36640102 None:intergenic
CACAAAGGCTGCTGAAGCTG+AGG 0.571919 2_2:-36640359 Msa0249580:CDS
GGAACGGGCAGCAGCCGTGA+AGG 0.572363 2_2:-36640272 Msa0249580:CDS
TGAGATCTGTTCAGTTGGAA+GGG 0.572783 2_2:-36640059 Msa0249580:CDS
TATAGTGGTGTTTCTGGTGA+GGG 0.573048 2_2:-36640448 Msa0249580:intron
CTATAGTGGTGTTTCTGGTG+AGG 0.574940 2_2:-36640449 Msa0249580:intron
ATCCTCAACCATATTGTCAA+CGG 0.584339 2_2:+36639317 None:intergenic
AGGCCACAATGTCACAACTC+TGG 0.585892 2_2:+36639262 None:intergenic
CACTGTCGAATCTTCTCTTG+TGG 0.587184 2_2:-36640416 Msa0249580:CDS
ATGAATATGGGAATGTTGCT+AGG 0.597917 2_2:-36640638 Msa0249580:CDS
GGAAGAGAAGAAGGCAGCTG+AGG 0.604357 2_2:-36640293 Msa0249580:CDS
TATTGTTGGATGTGAAGCCA+TGG 0.605647 2_2:-36640119 Msa0249580:CDS
GAGTTTACCTGTGTTAAGAG+AGG 0.611958 2_2:+36641263 None:intergenic
TGTGTCAGAAACTGGAGGAG+TGG 0.624152 2_2:+36640378 None:intergenic
TTACACGCAGTTACATCACT+GGG 0.625744 2_2:-36640822 Msa0249580:intron
TCCTCCAGTTTCTGACACAA+AGG 0.631021 2_2:-36640374 Msa0249580:CDS
TGTCCAGAGTTGTGACATTG+TGG 0.639251 2_2:-36639265 Msa0249580:CDS
ATTGTTGGATGTGAAGCCAT+GGG 0.652625 2_2:-36640118 Msa0249580:CDS
GCCTTTGTGTCAGAAACTGG+AGG 0.658117 2_2:+36640373 None:intergenic
CTCCTCGCCTCTCTTAACAC+AGG 0.661656 2_2:-36641270 Msa0249580:intron
TTTGTTTGGTGAAGAGACTG+AGG 0.673347 2_2:-36640314 Msa0249580:CDS
TACCTGTGTTAAGAGAGGCG+AGG 0.690075 2_2:+36641268 None:intergenic
AATATGGGAATGTTGCTAGG+TGG 0.778608 2_2:-36640635 Msa0249580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAAAAAATTGAATTTTT+TGG - chr2_2:36639621-36639640 Msa0249580:intron 10.0%
!!! ATGTAAAAAATTGAATTTTT+TGG - chr2_2:36639621-36639640 Msa0249580:intron 10.0%
!!! AGTAAAAAGATTGAATTTTT+CGG - chr2_2:36639494-36639513 Msa0249580:intron 15.0%
!! AAGTAGAAGAAAAAAAAAAA+TGG - chr2_2:36639682-36639701 Msa0249580:intron 15.0%
!!! TTATTGTATACTATTTTTCA+AGG - chr2_2:36640705-36640724 Msa0249580:intron 15.0%
!!! TTATTGTATACTATTTTTCA+AGG - chr2_2:36640705-36640724 Msa0249580:intron 15.0%
!! AAAATAAGATATTTCACTAT+TGG + chr2_2:36641036-36641055 None:intergenic 15.0%
!!! AGTAAAAAGATTGAATTTTT+CGG - chr2_2:36639494-36639513 Msa0249580:intron 15.0%
!! AAGTAGAAGAAAAAAAAAAA+TGG - chr2_2:36639682-36639701 Msa0249580:intron 15.0%
!!! TTATTGTATACTATTTTTCA+AGG - chr2_2:36640705-36640724 Msa0249580:intron 15.0%
!!! TTATTGTATACTATTTTTCA+AGG - chr2_2:36640705-36640724 Msa0249580:intron 15.0%
!! AAAATAAGATATTTCACTAT+TGG + chr2_2:36641036-36641055 None:intergenic 15.0%
!!! AAAAGGGTTTTGTTTTATAT+AGG + chr2_2:36639245-36639264 None:intergenic 20.0%
!! TATTGTTAACATCGAATTTA+GGG + chr2_2:36639390-36639409 None:intergenic 20.0%
!! ATAGTATACAATAAACTGAA+TGG + chr2_2:36640699-36640718 None:intergenic 20.0%
!!! TTACTTACAGATTTTATTGA+AGG + chr2_2:36641348-36641367 None:intergenic 20.0%
!!! AAAAGGGTTTTGTTTTATAT+AGG + chr2_2:36639245-36639264 None:intergenic 20.0%
!! TATTGTTAACATCGAATTTA+GGG + chr2_2:36639390-36639409 None:intergenic 20.0%
!! ATAGTATACAATAAACTGAA+TGG + chr2_2:36640699-36640718 None:intergenic 20.0%
!!! TTACTTACAGATTTTATTGA+AGG + chr2_2:36641348-36641367 None:intergenic 20.0%
! CTATTGTTAACATCGAATTT+AGG + chr2_2:36639391-36639410 None:intergenic 25.0%
!!! TTTTCGGTAATTTGTGTTAA+TGG - chr2_2:36639510-36639529 Msa0249580:intron 25.0%
!! TTTCGGTAATTTGTGTTAAT+GGG - chr2_2:36639511-36639530 Msa0249580:intron 25.0%
!!! TGTTTTTATTTGATCTGTGT+AGG - chr2_2:36639868-36639887 Msa0249580:intron 25.0%
! TAATTGACAAAGATGGTAAA+GGG + chr2_2:36640017-36640036 None:intergenic 25.0%
! ATAATTGACAAAGATGGTAA+AGG + chr2_2:36640018-36640037 None:intergenic 25.0%
! TCGAATATAATTGACAAAGA+TGG + chr2_2:36640024-36640043 None:intergenic 25.0%
!! CTCATATCCTCATAAATTTT+CGG - chr2_2:36640376-36640395 Msa0249580:CDS 25.0%
!!! ATATGTTTGTTTTCCACTAT+TGG - chr2_2:36640769-36640788 Msa0249580:intron 25.0%
!!! TATGTTTGTTTTCCACTATT+GGG - chr2_2:36640770-36640789 Msa0249580:intron 25.0%
!!! ATAAGTTTGTTTTCCACTAT+TGG - chr2_2:36640960-36640979 Msa0249580:intron 25.0%
!!! TAAGTTTGTTTTCCACTATT+GGG - chr2_2:36640961-36640980 Msa0249580:intron 25.0%
! TCAAATTATGCTTACTATTG+TGG - chr2_2:36641235-36641254 Msa0249580:intron 25.0%
! CTATTGTTAACATCGAATTT+AGG + chr2_2:36639391-36639410 None:intergenic 25.0%
!!! TTTTCGGTAATTTGTGTTAA+TGG - chr2_2:36639510-36639529 Msa0249580:intron 25.0%
!! TTTCGGTAATTTGTGTTAAT+GGG - chr2_2:36639511-36639530 Msa0249580:intron 25.0%
!!! TGTTTTTATTTGATCTGTGT+AGG - chr2_2:36639868-36639887 Msa0249580:intron 25.0%
! TAATTGACAAAGATGGTAAA+GGG + chr2_2:36640017-36640036 None:intergenic 25.0%
! ATAATTGACAAAGATGGTAA+AGG + chr2_2:36640018-36640037 None:intergenic 25.0%
! TCGAATATAATTGACAAAGA+TGG + chr2_2:36640024-36640043 None:intergenic 25.0%
!! CTCATATCCTCATAAATTTT+CGG - chr2_2:36640376-36640395 Msa0249580:CDS 25.0%
!!! ATATGTTTGTTTTCCACTAT+TGG - chr2_2:36640769-36640788 Msa0249580:intron 25.0%
!!! TATGTTTGTTTTCCACTATT+GGG - chr2_2:36640770-36640789 Msa0249580:intron 25.0%
!!! ATAAGTTTGTTTTCCACTAT+TGG - chr2_2:36640960-36640979 Msa0249580:intron 25.0%
!!! TAAGTTTGTTTTCCACTATT+GGG - chr2_2:36640961-36640980 Msa0249580:intron 25.0%
! TCAAATTATGCTTACTATTG+TGG - chr2_2:36641235-36641254 Msa0249580:intron 25.0%
AGTGAGAGTGAATTGAAAAA+GGG + chr2_2:36639261-36639280 None:intergenic 30.0%
AAGTGAGAGTGAATTGAAAA+AGG + chr2_2:36639262-36639281 None:intergenic 30.0%
AGCCTTAAAAAACACAGATT+CGG + chr2_2:36639451-36639470 None:intergenic 30.0%
!! TCCTGATTTGAGTTTTTCTT+TGG - chr2_2:36639564-36639583 Msa0249580:intron 30.0%
!! CCTGATTTGAGTTTTTCTTT+GGG - chr2_2:36639565-36639584 Msa0249580:intron 30.0%
!! CTGATTTGAGTTTTTCTTTG+GGG - chr2_2:36639566-36639585 Msa0249580:intron 30.0%
!! TGATTTGAGTTTTTCTTTGG+GGG - chr2_2:36639567-36639586 Msa0249580:intron 30.0%
AGTTACACTCTATAACCTTA+AGG - chr2_2:36639706-36639725 Msa0249580:intron 30.0%
! TATTCATATGATGGAACTGA+TGG + chr2_2:36639936-36639955 None:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG - chr2_2:36639936-36639955 Msa0249580:intron 30.0%
CAGTTCCATCATATGAATAT+GGG - chr2_2:36639937-36639956 Msa0249580:intron 30.0%
ACATTCCCATATTCATATGA+TGG + chr2_2:36639945-36639964 None:intergenic 30.0%
!! ATTGAGTTTTGTGACTATAG+TGG - chr2_2:36640124-36640143 Msa0249580:CDS 30.0%
! ATAAATTTTCGGAATCTGGT+TGG - chr2_2:36640387-36640406 Msa0249580:CDS 30.0%
! TGGACATCAATTTAGAGTAT+TGG - chr2_2:36640407-36640426 Msa0249580:CDS 30.0%
!!! ATTTTTCAAGGCTATGTCTA+CGG - chr2_2:36640717-36640736 Msa0249580:intron 30.0%
TCATATCTCACTTGATCTAA+TGG - chr2_2:36640806-36640825 Msa0249580:intron 30.0%
! AACAAGTTTGCTTTCACTAT+TGG + chr2_2:36640845-36640864 None:intergenic 30.0%
!!! ATTTTTCAAGGCTATGTCTA+TGG - chr2_2:36640717-36640736 Msa0249580:intron 30.0%
TGGTGCACAAATAAGATATT+TGG - chr2_2:36640927-36640946 Msa0249580:intron 30.0%
TAGATCAAGCGAGATATTAA+GGG + chr2_2:36640996-36641015 None:intergenic 30.0%
TTAGATCAAGCGAGATATTA+AGG + chr2_2:36640997-36641016 None:intergenic 30.0%
TAATATCTCGCTTGATCTAA+TGG - chr2_2:36640997-36641016 Msa0249580:intron 30.0%
AGTGAGAGTGAATTGAAAAA+GGG + chr2_2:36639261-36639280 None:intergenic 30.0%
AAGTGAGAGTGAATTGAAAA+AGG + chr2_2:36639262-36639281 None:intergenic 30.0%
AGCCTTAAAAAACACAGATT+CGG + chr2_2:36639451-36639470 None:intergenic 30.0%
!! TCCTGATTTGAGTTTTTCTT+TGG - chr2_2:36639564-36639583 Msa0249580:intron 30.0%
!! CCTGATTTGAGTTTTTCTTT+GGG - chr2_2:36639565-36639584 Msa0249580:intron 30.0%
!! CTGATTTGAGTTTTTCTTTG+GGG - chr2_2:36639566-36639585 Msa0249580:intron 30.0%
!! TGATTTGAGTTTTTCTTTGG+GGG - chr2_2:36639567-36639586 Msa0249580:intron 30.0%
AGTTACACTCTATAACCTTA+AGG - chr2_2:36639706-36639725 Msa0249580:intron 30.0%
! TATTCATATGATGGAACTGA+TGG + chr2_2:36639936-36639955 None:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG - chr2_2:36639936-36639955 Msa0249580:intron 30.0%
CAGTTCCATCATATGAATAT+GGG - chr2_2:36639937-36639956 Msa0249580:intron 30.0%
ACATTCCCATATTCATATGA+TGG + chr2_2:36639945-36639964 None:intergenic 30.0%
!! ATTGAGTTTTGTGACTATAG+TGG - chr2_2:36640124-36640143 Msa0249580:CDS 30.0%
! ATAAATTTTCGGAATCTGGT+TGG - chr2_2:36640387-36640406 Msa0249580:CDS 30.0%
! TGGACATCAATTTAGAGTAT+TGG - chr2_2:36640407-36640426 Msa0249580:CDS 30.0%
!!! ATTTTTCAAGGCTATGTCTA+CGG - chr2_2:36640717-36640736 Msa0249580:intron 30.0%
TCATATCTCACTTGATCTAA+TGG - chr2_2:36640806-36640825 Msa0249580:intron 30.0%
! AACAAGTTTGCTTTCACTAT+TGG + chr2_2:36640845-36640864 None:intergenic 30.0%
!!! ATTTTTCAAGGCTATGTCTA+TGG - chr2_2:36640717-36640736 Msa0249580:intron 30.0%
TGGTGCACAAATAAGATATT+TGG - chr2_2:36640927-36640946 Msa0249580:intron 30.0%
TAGATCAAGCGAGATATTAA+GGG + chr2_2:36640996-36641015 None:intergenic 30.0%
TTAGATCAAGCGAGATATTA+AGG + chr2_2:36640997-36641016 None:intergenic 30.0%
TAATATCTCGCTTGATCTAA+TGG - chr2_2:36640997-36641016 Msa0249580:intron 30.0%
!!! TCCCGAATCTGTGTTTTTTA+AGG - chr2_2:36639446-36639465 Msa0249580:intron 35.0%
GCCTTAAAAAACACAGATTC+GGG + chr2_2:36639450-36639469 None:intergenic 35.0%
CCCAAAGAAAAACTCAAATC+AGG + chr2_2:36639568-36639587 None:intergenic 35.0%
TATAACCTTAAGGCTGAATC+TGG - chr2_2:36639716-36639735 Msa0249580:intron 35.0%
ATGAATATGGGAATGTTGCT+AGG - chr2_2:36639949-36639968 Msa0249580:intron 35.0%
!! GATGACGATGTTGATTTGTT+TGG - chr2_2:36640259-36640278 Msa0249580:CDS 35.0%
CCAGATTCCGAAAATTTATG+AGG + chr2_2:36640386-36640405 None:intergenic 35.0%
! CCTCATAAATTTTCGGAATC+TGG - chr2_2:36640383-36640402 Msa0249580:CDS 35.0%
! TTTCTGCTGATTGCATTATC+AGG - chr2_2:36640431-36640450 Msa0249580:CDS 35.0%
TGGGAAATCATCTGTATTGT+TGG - chr2_2:36640454-36640473 Msa0249580:intron 35.0%
TTCTTCAAGCTTCTTCATGT+CGG + chr2_2:36640504-36640523 None:intergenic 35.0%
ACGGTGCACAAATAAGATAT+TGG - chr2_2:36640736-36640755 Msa0249580:intron 35.0%
TATCTCACTTGATCTAATGG+TGG - chr2_2:36640809-36640828 Msa0249580:intron 35.0%
! AGTGAAAGCAAACTTGTTCA+CGG - chr2_2:36640847-36640866 Msa0249580:CDS 35.0%
! TCTTGTTTCCGTTGACAATA+TGG - chr2_2:36641262-36641281 Msa0249580:intron 35.0%
ATCCTCAACCATATTGTCAA+CGG + chr2_2:36641273-36641292 None:intergenic 35.0%
!!! TCCCGAATCTGTGTTTTTTA+AGG - chr2_2:36639446-36639465 Msa0249580:intron 35.0%
GCCTTAAAAAACACAGATTC+GGG + chr2_2:36639450-36639469 None:intergenic 35.0%
CCCAAAGAAAAACTCAAATC+AGG + chr2_2:36639568-36639587 None:intergenic 35.0%
TATAACCTTAAGGCTGAATC+TGG - chr2_2:36639716-36639735 Msa0249580:intron 35.0%
ATGAATATGGGAATGTTGCT+AGG - chr2_2:36639949-36639968 Msa0249580:intron 35.0%
!! GATGACGATGTTGATTTGTT+TGG - chr2_2:36640259-36640278 Msa0249580:CDS 35.0%
CCAGATTCCGAAAATTTATG+AGG + chr2_2:36640386-36640405 None:intergenic 35.0%
! CCTCATAAATTTTCGGAATC+TGG - chr2_2:36640383-36640402 Msa0249580:CDS 35.0%
! TTTCTGCTGATTGCATTATC+AGG - chr2_2:36640431-36640450 Msa0249580:CDS 35.0%
TGGGAAATCATCTGTATTGT+TGG - chr2_2:36640454-36640473 Msa0249580:intron 35.0%
TTCTTCAAGCTTCTTCATGT+CGG + chr2_2:36640504-36640523 None:intergenic 35.0%
ACGGTGCACAAATAAGATAT+TGG - chr2_2:36640736-36640755 Msa0249580:intron 35.0%
TATCTCACTTGATCTAATGG+TGG - chr2_2:36640809-36640828 Msa0249580:intron 35.0%
! AGTGAAAGCAAACTTGTTCA+CGG - chr2_2:36640847-36640866 Msa0249580:CDS 35.0%
! TCTTGTTTCCGTTGACAATA+TGG - chr2_2:36641262-36641281 Msa0249580:intron 35.0%
ATCCTCAACCATATTGTCAA+CGG + chr2_2:36641273-36641292 None:intergenic 35.0%
GAGTTTACCTGTGTTAAGAG+AGG + chr2_2:36639327-36639346 None:intergenic 40.0%
TCAAACCAGATTCAGCCTTA+AGG + chr2_2:36639724-36639743 None:intergenic 40.0%
TGATGTAACTGCGTGTAAGA+AGG + chr2_2:36639763-36639782 None:intergenic 40.0%
TTACACGCAGTTACATCACT+GGG - chr2_2:36639765-36639784 Msa0249580:intron 40.0%
!! TGATGTCATCCTTTGAAGCT+TGG + chr2_2:36639896-36639915 None:intergenic 40.0%
AATATGGGAATGTTGCTAGG+TGG - chr2_2:36639952-36639971 Msa0249580:intron 40.0%
TGTGACTATAGTGGTGTTTC+TGG - chr2_2:36640133-36640152 Msa0249580:CDS 40.0%
!! TATAGTGGTGTTTCTGGTGA+GGG - chr2_2:36640139-36640158 Msa0249580:intron 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG - chr2_2:36640273-36640292 Msa0249580:CDS 40.0%
! TGCTGATTGCATTATCAGGT+GGG - chr2_2:36640435-36640454 Msa0249580:CDS 40.0%
TATTGTTGGATGTGAAGCCA+TGG - chr2_2:36640468-36640487 Msa0249580:intron 40.0%
ATTGTTGGATGTGAAGCCAT+GGG - chr2_2:36640469-36640488 Msa0249580:intron 40.0%
TGAGATCTGTTCAGTTGGAA+GGG - chr2_2:36640528-36640547 Msa0249580:intron 40.0%
! TTCAGTTGGAAGGGTTGTTT+TGG - chr2_2:36640537-36640556 Msa0249580:intron 40.0%
!! TCAGTTGGAAGGGTTGTTTT+GGG - chr2_2:36640538-36640557 Msa0249580:intron 40.0%
CAATAAACTGAATGGTGCAC+AGG + chr2_2:36640881-36640900 None:intergenic 40.0%
TATCTCGCTTGATCTAATGG+TGG - chr2_2:36641000-36641019 Msa0249580:intron 40.0%
! ATAGCCAAACTTGTTCCTGT+TGG - chr2_2:36641194-36641213 Msa0249580:intron 40.0%
! TAGCCAAACTTGTTCCTGTT+GGG - chr2_2:36641195-36641214 Msa0249580:intron 40.0%
! AAACTTGTTCCTGTTGGGTA+CGG - chr2_2:36641200-36641219 Msa0249580:intron 40.0%
TTCCGTTGACAATATGGTTG+AGG - chr2_2:36641268-36641287 Msa0249580:intron 40.0%
CTCTGGACATACTCATTGAT+GGG + chr2_2:36641311-36641330 None:intergenic 40.0%
ACTCTGGACATACTCATTGA+TGG + chr2_2:36641312-36641331 None:intergenic 40.0%
GAGTTTACCTGTGTTAAGAG+AGG + chr2_2:36639327-36639346 None:intergenic 40.0%
TCAAACCAGATTCAGCCTTA+AGG + chr2_2:36639724-36639743 None:intergenic 40.0%
TGATGTAACTGCGTGTAAGA+AGG + chr2_2:36639763-36639782 None:intergenic 40.0%
TTACACGCAGTTACATCACT+GGG - chr2_2:36639765-36639784 Msa0249580:intron 40.0%
!! TGATGTCATCCTTTGAAGCT+TGG + chr2_2:36639896-36639915 None:intergenic 40.0%
AATATGGGAATGTTGCTAGG+TGG - chr2_2:36639952-36639971 Msa0249580:intron 40.0%
TGTGACTATAGTGGTGTTTC+TGG - chr2_2:36640133-36640152 Msa0249580:CDS 40.0%
!! TATAGTGGTGTTTCTGGTGA+GGG - chr2_2:36640139-36640158 Msa0249580:intron 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG - chr2_2:36640273-36640292 Msa0249580:CDS 40.0%
! TGCTGATTGCATTATCAGGT+GGG - chr2_2:36640435-36640454 Msa0249580:CDS 40.0%
TATTGTTGGATGTGAAGCCA+TGG - chr2_2:36640468-36640487 Msa0249580:intron 40.0%
ATTGTTGGATGTGAAGCCAT+GGG - chr2_2:36640469-36640488 Msa0249580:intron 40.0%
TGAGATCTGTTCAGTTGGAA+GGG - chr2_2:36640528-36640547 Msa0249580:intron 40.0%
! TTCAGTTGGAAGGGTTGTTT+TGG - chr2_2:36640537-36640556 Msa0249580:intron 40.0%
!! TCAGTTGGAAGGGTTGTTTT+GGG - chr2_2:36640538-36640557 Msa0249580:intron 40.0%
CAATAAACTGAATGGTGCAC+AGG + chr2_2:36640881-36640900 None:intergenic 40.0%
TATCTCGCTTGATCTAATGG+TGG - chr2_2:36641000-36641019 Msa0249580:intron 40.0%
! ATAGCCAAACTTGTTCCTGT+TGG - chr2_2:36641194-36641213 Msa0249580:intron 40.0%
! TAGCCAAACTTGTTCCTGTT+GGG - chr2_2:36641195-36641214 Msa0249580:intron 40.0%
! AAACTTGTTCCTGTTGGGTA+CGG - chr2_2:36641200-36641219 Msa0249580:intron 40.0%
TTCCGTTGACAATATGGTTG+AGG - chr2_2:36641268-36641287 Msa0249580:intron 40.0%
CTCTGGACATACTCATTGAT+GGG + chr2_2:36641311-36641330 None:intergenic 40.0%
ACTCTGGACATACTCATTGA+TGG + chr2_2:36641312-36641331 None:intergenic 40.0%
CTTACACGCAGTTACATCAC+TGG - chr2_2:36639764-36639783 Msa0249580:intron 45.0%
GTGTAGGTACCAAGCTTCAA+AGG - chr2_2:36639884-36639903 Msa0249580:intron 45.0%
!! CTATAGTGGTGTTTCTGGTG+AGG - chr2_2:36640138-36640157 Msa0249580:intron 45.0%
CACTGTCGAATCTTCTCTTG+TGG - chr2_2:36640171-36640190 Msa0249580:intron 45.0%
TCCTCCAGTTTCTGACACAA+AGG - chr2_2:36640213-36640232 Msa0249580:intron 45.0%
AGAGACTGAGGAAGAGAAGA+AGG - chr2_2:36640285-36640304 Msa0249580:CDS 45.0%
! CTTTTTGCCAGATGCCTTCA+CGG + chr2_2:36640332-36640351 None:intergenic 45.0%
! CTGCTGATTGCATTATCAGG+TGG - chr2_2:36640434-36640453 Msa0249580:CDS 45.0%
AGCAGTGAGATCTGTTCAGT+TGG - chr2_2:36640523-36640542 Msa0249580:intron 45.0%
GTGAGATCTGTTCAGTTGGA+AGG - chr2_2:36640527-36640546 Msa0249580:intron 45.0%
!! CAGTTGGAAGGGTTGTTTTG+GGG - chr2_2:36640539-36640558 Msa0249580:intron 45.0%
GCGACTTAATGACCCAATAG+TGG + chr2_2:36640785-36640804 None:intergenic 45.0%
GGGACTTATTGACCCAATAG+TGG + chr2_2:36640976-36640995 None:intergenic 45.0%
GTACCCAACAGGAACAAGTT+TGG + chr2_2:36641201-36641220 None:intergenic 45.0%
TTCTTGATACCGTACCCAAC+AGG + chr2_2:36641212-36641231 None:intergenic 45.0%
TGTCCAGAGTTGTGACATTG+TGG - chr2_2:36641322-36641341 Msa0249580:five_prime_UTR 45.0%
CTTACACGCAGTTACATCAC+TGG - chr2_2:36639764-36639783 Msa0249580:intron 45.0%
GTGTAGGTACCAAGCTTCAA+AGG - chr2_2:36639884-36639903 Msa0249580:intron 45.0%
!! CTATAGTGGTGTTTCTGGTG+AGG - chr2_2:36640138-36640157 Msa0249580:intron 45.0%
CACTGTCGAATCTTCTCTTG+TGG - chr2_2:36640171-36640190 Msa0249580:intron 45.0%
TCCTCCAGTTTCTGACACAA+AGG - chr2_2:36640213-36640232 Msa0249580:intron 45.0%
AGAGACTGAGGAAGAGAAGA+AGG - chr2_2:36640285-36640304 Msa0249580:CDS 45.0%
! CTTTTTGCCAGATGCCTTCA+CGG + chr2_2:36640332-36640351 None:intergenic 45.0%
! CTGCTGATTGCATTATCAGG+TGG - chr2_2:36640434-36640453 Msa0249580:CDS 45.0%
AGCAGTGAGATCTGTTCAGT+TGG - chr2_2:36640523-36640542 Msa0249580:intron 45.0%
GTGAGATCTGTTCAGTTGGA+AGG - chr2_2:36640527-36640546 Msa0249580:intron 45.0%
!! CAGTTGGAAGGGTTGTTTTG+GGG - chr2_2:36640539-36640558 Msa0249580:intron 45.0%
GCGACTTAATGACCCAATAG+TGG + chr2_2:36640785-36640804 None:intergenic 45.0%
GGGACTTATTGACCCAATAG+TGG + chr2_2:36640976-36640995 None:intergenic 45.0%
GTACCCAACAGGAACAAGTT+TGG + chr2_2:36641201-36641220 None:intergenic 45.0%
TTCTTGATACCGTACCCAAC+AGG + chr2_2:36641212-36641231 None:intergenic 45.0%
TGTCCAGAGTTGTGACATTG+TGG - chr2_2:36641322-36641341 Msa0249580:five_prime_UTR 45.0%
AAGAGAGGCGAGGAGATTGA+AGG + chr2_2:36639312-36639331 None:intergenic 50.0%
TACCTGTGTTAAGAGAGGCG+AGG + chr2_2:36639322-36639341 None:intergenic 50.0%
ACGCAGTTACATCACTGGGT+AGG - chr2_2:36639769-36639788 Msa0249580:intron 50.0%
TGTGTCAGAAACTGGAGGAG+TGG + chr2_2:36640212-36640231 None:intergenic 50.0%
GCCTTTGTGTCAGAAACTGG+AGG + chr2_2:36640217-36640236 None:intergenic 50.0%
GCAGCCTTTGTGTCAGAAAC+TGG + chr2_2:36640220-36640239 None:intergenic 50.0%
AGAAGAAGGCAGCTGAGGAA+CGG - chr2_2:36640299-36640318 Msa0249580:CDS 50.0%
ATGTCGGTCTCATCATCCCA+TGG + chr2_2:36640488-36640507 None:intergenic 50.0%
AGGCCACAATGTCACAACTC+TGG + chr2_2:36641328-36641347 None:intergenic 50.0%
AAGAGAGGCGAGGAGATTGA+AGG + chr2_2:36639312-36639331 None:intergenic 50.0%
TACCTGTGTTAAGAGAGGCG+AGG + chr2_2:36639322-36639341 None:intergenic 50.0%
ACGCAGTTACATCACTGGGT+AGG - chr2_2:36639769-36639788 Msa0249580:intron 50.0%
TGTGTCAGAAACTGGAGGAG+TGG + chr2_2:36640212-36640231 None:intergenic 50.0%
GCCTTTGTGTCAGAAACTGG+AGG + chr2_2:36640217-36640236 None:intergenic 50.0%
GCAGCCTTTGTGTCAGAAAC+TGG + chr2_2:36640220-36640239 None:intergenic 50.0%
AGAAGAAGGCAGCTGAGGAA+CGG - chr2_2:36640299-36640318 Msa0249580:CDS 50.0%
ATGTCGGTCTCATCATCCCA+TGG + chr2_2:36640488-36640507 None:intergenic 50.0%
AGGCCACAATGTCACAACTC+TGG + chr2_2:36641328-36641347 None:intergenic 50.0%
CTCCTCGCCTCTCTTAACAC+AGG - chr2_2:36639317-36639336 Msa0249580:CDS 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG - chr2_2:36640145-36640164 Msa0249580:intron 55.0%
CACAAAGGCTGCTGAAGCTG+AGG - chr2_2:36640228-36640247 Msa0249580:intron 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG - chr2_2:36640294-36640313 Msa0249580:CDS 55.0%
GAAGAAGGCAGCTGAGGAAC+GGG - chr2_2:36640300-36640319 Msa0249580:CDS 55.0%
CTCCTCGCCTCTCTTAACAC+AGG - chr2_2:36639317-36639336 Msa0249580:CDS 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG - chr2_2:36640145-36640164 Msa0249580:intron 55.0%
CACAAAGGCTGCTGAAGCTG+AGG - chr2_2:36640228-36640247 Msa0249580:intron 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG - chr2_2:36640294-36640313 Msa0249580:CDS 55.0%
GAAGAAGGCAGCTGAGGAAC+GGG - chr2_2:36640300-36640319 Msa0249580:CDS 55.0%
!! GCAGCAGCCGTGAAGGCATC+TGG - chr2_2:36640322-36640341 Msa0249580:CDS 65.0%
!! GCAGCAGCCGTGAAGGCATC+TGG - chr2_2:36640322-36640341 Msa0249580:CDS 65.0%
GGAACGGGCAGCAGCCGTGA+AGG - chr2_2:36640315-36640334 Msa0249580:CDS 70.0%
GGAACGGGCAGCAGCCGTGA+AGG - chr2_2:36640315-36640334 Msa0249580:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 36639242 36641367 36639242 ID=Msa0249580;Name=Msa0249580
chr2_2 mRNA 36639242 36641367 36639242 ID=Msa0249580-mRNA-1;Parent=Msa0249580;Name=Msa0249580-mRNA-1;_AED=0.19;_eAED=0.19;_QI=110|1|0.83|1|0.8|0.66|6|0|233
chr2_2 exon 36639242 36639411 36639242 ID=Msa0249580-mRNA-1:exon:11694;Parent=Msa0249580-mRNA-1
chr2_2 exon 36640043 36640156 36640043 ID=Msa0249580-mRNA-1:exon:11693;Parent=Msa0249580-mRNA-1
chr2_2 exon 36640251 36640465 36640251 ID=Msa0249580-mRNA-1:exon:11692;Parent=Msa0249580-mRNA-1
chr2_2 exon 36640603 36640719 36640603 ID=Msa0249580-mRNA-1:exon:11691;Parent=Msa0249580-mRNA-1
chr2_2 exon 36640823 36640921 36640823 ID=Msa0249580-mRNA-1:exon:11690;Parent=Msa0249580-mRNA-1
chr2_2 exon 36641271 36641367 36641271 ID=Msa0249580-mRNA-1:exon:11689;Parent=Msa0249580-mRNA-1
chr2_2 five_prime_UTR 36641271 36641367 36641271 ID=Msa0249580-mRNA-1:five_prime_utr;Parent=Msa0249580-mRNA-1
chr2_2 five_prime_UTR 36640909 36640921 36640909 ID=Msa0249580-mRNA-1:five_prime_utr;Parent=Msa0249580-mRNA-1
chr2_2 CDS 36640823 36640908 36640823 ID=Msa0249580-mRNA-1:cds;Parent=Msa0249580-mRNA-1
chr2_2 CDS 36640603 36640719 36640603 ID=Msa0249580-mRNA-1:cds;Parent=Msa0249580-mRNA-1
chr2_2 CDS 36640251 36640465 36640251 ID=Msa0249580-mRNA-1:cds;Parent=Msa0249580-mRNA-1
chr2_2 CDS 36640043 36640156 36640043 ID=Msa0249580-mRNA-1:cds;Parent=Msa0249580-mRNA-1
chr2_2 CDS 36639242 36639411 36639242 ID=Msa0249580-mRNA-1:cds;Parent=Msa0249580-mRNA-1
Gene Sequence

>Msa0249580

ATGGCAGTTACACTCTATAACCTTAAGGCTGAATCTGGTTTGAAGAAGCTTGATGAGTACCTTCTTACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATCACTGTTTATGCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTGCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTCGAATCTTCTCTTGTGGCTGAAGAGACTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCTGCTGAAGCTGAGGATGAAGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTATTGTTGGATGTGAAGCCATGGGATGATGAGACCGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTTGACAATATGGTTGAGGATTATCTTACTGTTGAGCCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATCTGTAAGTAA

Protein sequence

>Msa0249580

MAVTLYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYAALPSVPSYEYGNVARWYKHIDALLRIAGVSGEGSGVTVESSLVAEETVATPPVSDTKAAEAEDEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKICK*