AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0326480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326480 MtrunA17_Chr2g0305121 98.268 231 2 1 37 265 1 231 7.67e-162 449
Msa0326480 MtrunA17_Chr4g0008681 93.939 231 12 1 37 265 1 231 1.04e-132 375
Msa0326480 MtrunA17_Chr5g0441161 56.710 231 90 4 37 265 1 223 1.29e-76 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326480 AT2G18110.1 79.204 226 44 2 43 265 6 231 3.36e-107 310
Msa0326480 AT1G30230.1 78.319 226 46 2 43 265 6 231 3.28e-103 300
Msa0326480 AT1G30230.2 78.319 226 46 2 43 265 6 231 8.91e-103 300
Msa0326480 AT5G12110.1 58.723 235 84 4 37 265 1 228 1.22e-74 227
Msa0326480 AT5G19510.1 56.710 231 91 3 37 265 1 224 4.55e-68 210

Find 79 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACTATAGTGGTGTTTC+TGG 0.119961 2_4:+36424402 Msa0326480:intron
TCACGTGACATTAAAATTTC+TGG 0.141693 2_4:+36425981 Msa0326480:three_prime_UTR
TTCAGTTGGAAGGGTTGTTT+TGG 0.210487 2_4:+36424806 Msa0326480:CDS
TCAGTTCCATCATATGAATA+TGG 0.245099 2_4:+36424205 Msa0326480:CDS
AAGTGAGAGTGAATTGAAAA+AGG 0.250665 2_4:-36423526 None:intergenic
ATTCAAACTTTAAGAATTGT+AGG 0.290516 2_4:+36425908 Msa0326480:three_prime_UTR
TCTTGTTTCCGTTGACAATA+TGG 0.314177 2_4:+36425531 Msa0326480:CDS
TTATAACACAATACTGATAA+TGG 0.319961 2_4:-36425883 None:intergenic
GGGCAGAAATTGCAATTATT+AGG 0.324238 2_4:+36425760 Msa0326480:three_prime_UTR
GCAGCCTTTGTGTCAGAAAC+TGG 0.339173 2_4:-36424486 None:intergenic
ATTAGGGTAATTTGCTTTGC+CGG 0.341310 2_4:-36426022 None:intergenic
GCAGCAGCCGTGAAGGCATC+TGG 0.384826 2_4:+36424591 Msa0326480:CDS
GAAGAAGGCAGCTGAGGAAC+GGG 0.395604 2_4:+36424569 Msa0326480:CDS
GCTTTGCCGGGGTTTGTTAG+AGG 0.396599 2_4:-36426009 None:intergenic
TATAACCTTAAGGCTGAATC+TGG 0.399774 2_4:+36423982 Msa0326480:CDS
CACGTGACATTAAAATTTCT+GGG 0.402859 2_4:+36425982 Msa0326480:three_prime_UTR
GATGACGATGTTGATTTGTT+TGG 0.412687 2_4:+36424528 Msa0326480:CDS
TCAAATTATGCTTACTATTG+TGG 0.416944 2_4:+36425504 Msa0326480:CDS
TCAAACCAGATTCAGCCTTA+AGG 0.419155 2_4:-36423987 None:intergenic
TAGCCAAACTTGTTCCTGTT+GGG 0.428630 2_4:+36425464 Msa0326480:intron
GGTGTTTCTGGTGAGGGATC+TGG 0.436594 2_4:+36424414 Msa0326480:CDS
GTACCCAACAGGAACAAGTT+TGG 0.443426 2_4:-36425467 None:intergenic
ACTCTGGACATACTCATTGA+TGG 0.454225 2_4:-36425578 None:intergenic
TTCTTGATACCGTACCCAAC+AGG 0.456829 2_4:-36425478 None:intergenic
CAGTTCCATCATATGAATAT+GGG 0.459928 2_4:+36424206 Msa0326480:CDS
TGGGAAATCATCTGTATTGT+TGG 0.466041 2_4:+36424723 Msa0326480:CDS
TTAGGGTAATTTGCTTTGCC+GGG 0.475794 2_4:-36426021 None:intergenic
TTCCGTTGACAATATGGTTG+AGG 0.479405 2_4:+36425537 Msa0326480:CDS
ATTATTAGGAATGACAATCA+AGG 0.483342 2_4:+36425774 Msa0326480:three_prime_UTR
AGTTACACTCTATAACCTTA+AGG 0.486396 2_4:+36423972 Msa0326480:CDS
TTCTTCAAGCTTCTTCATGT+CGG 0.497830 2_4:-36424770 None:intergenic
TTCGTATAACATGGAGATCA+TGG 0.498458 2_4:+36425733 Msa0326480:three_prime_UTR
AGCAGTGAGATCTGTTCAGT+TGG 0.499725 2_4:+36424792 Msa0326480:CDS
ACATTCCCATATTCATATGA+TGG 0.500557 2_4:-36424211 None:intergenic
TGATGTCATCCTTTGAAGCT+TGG 0.506163 2_4:-36424162 None:intergenic
GTGAGATCTGTTCAGTTGGA+AGG 0.509565 2_4:+36424796 Msa0326480:CDS
ATAGCCAAACTTGTTCCTGT+TGG 0.511083 2_4:+36425463 Msa0326480:intron
AGAAGAAGGCAGCTGAGGAA+CGG 0.514292 2_4:+36424568 Msa0326480:CDS
AAACTTGTTCCTGTTGGGTA+CGG 0.517929 2_4:+36425469 Msa0326480:CDS
TATTCATATGATGGAACTGA+TGG 0.520528 2_4:-36424202 None:intergenic
AGAGACTGAGGAAGAGAAGA+AGG 0.523236 2_4:+36424554 Msa0326480:CDS
CTTACACGCAGTTACATCAC+TGG 0.529989 2_4:+36424030 Msa0326480:CDS
AAGAGAGGCGAGGAGATTGA+AGG 0.541739 2_4:-36423576 None:intergenic
CTCTGGACATACTCATTGAT+GGG 0.544249 2_4:-36425577 None:intergenic
TGATGTAACTGCGTGTAAGA+AGG 0.549903 2_4:-36424026 None:intergenic
GTGTAGGTACCAAGCTTCAA+AGG 0.552158 2_4:+36424153 Msa0326480:intron
TATAACATGGAGATCATGGT+AGG 0.560815 2_4:+36425737 Msa0326480:three_prime_UTR
ATGTCGGTCTCATCATCCCA+TGG 0.564640 2_4:-36424754 None:intergenic
CACAAAGGCTGCTGAAGCTG+AGG 0.571919 2_4:+36424497 Msa0326480:CDS
GGAACGGGCAGCAGCCGTGA+AGG 0.572363 2_4:+36424584 Msa0326480:CDS
TGAGATCTGTTCAGTTGGAA+GGG 0.572783 2_4:+36424797 Msa0326480:CDS
TATAGTGGTGTTTCTGGTGA+GGG 0.573048 2_4:+36424408 Msa0326480:intron
CTATAGTGGTGTTTCTGGTG+AGG 0.574940 2_4:+36424407 Msa0326480:intron
ATCCTCAACCATATTGTCAA+CGG 0.584339 2_4:-36425539 None:intergenic
AGGCCACAATGTCACAACTC+TGG 0.585892 2_4:-36425594 None:intergenic
CACTGTCGAATCTTCTCTTG+TGG 0.587184 2_4:+36424440 Msa0326480:CDS
ATAACATGGAGATCATGGTA+GGG 0.587204 2_4:+36425738 Msa0326480:three_prime_UTR
ATGAATATGGGAATGTTGCT+AGG 0.597917 2_4:+36424218 Msa0326480:CDS
TAACATGGAGATCATGGTAG+GGG 0.599825 2_4:+36425739 Msa0326480:three_prime_UTR
GGAAGAGAAGAAGGCAGCTG+AGG 0.604357 2_4:+36424563 Msa0326480:CDS
TATTGTTGGATGTGAAGCCA+TGG 0.605647 2_4:+36424737 Msa0326480:CDS
GAGTTTACCTGTGTTAAGAG+AGG 0.611958 2_4:-36423591 None:intergenic
AAATGACAGCAACAACAAGT+AGG 0.612547 2_4:-36425836 None:intergenic
TAGGGTAATTTGCTTTGCCG+GGG 0.615630 2_4:-36426020 None:intergenic
TTATTAGGAATGACAATCAA+GGG 0.619399 2_4:+36425775 Msa0326480:three_prime_UTR
TGTGTCAGAAACTGGAGGAG+TGG 0.624152 2_4:-36424478 None:intergenic
TTACACGCAGTTACATCACT+GGG 0.625744 2_4:+36424031 Msa0326480:CDS
TCCTCCAGTTTCTGACACAA+AGG 0.631021 2_4:+36424482 Msa0326480:CDS
TGTCCAGAGTTGTGACATTG+TGG 0.639251 2_4:+36425591 Msa0326480:CDS
AATCTGCAATTCGTATAACA+TGG 0.639814 2_4:+36425724 Msa0326480:exon
ACGTGACATTAAAATTTCTG+GGG 0.648205 2_4:+36425983 Msa0326480:three_prime_UTR
ATTGTTGGATGTGAAGCCAT+GGG 0.652625 2_4:+36424738 Msa0326480:CDS
GCCTTTGTGTCAGAAACTGG+AGG 0.658117 2_4:-36424483 None:intergenic
CTCCTCGCCTCTCTTAACAC+AGG 0.661656 2_4:+36423584 Msa0326480:CDS
TTTGTTTGGTGAAGAGACTG+AGG 0.673347 2_4:+36424542 Msa0326480:CDS
GGGTGTCCTCTAACAAACCC+CGG 0.674089 2_4:+36426003 Msa0326480:three_prime_UTR
TACCTGTGTTAAGAGAGGCG+AGG 0.690075 2_4:-36423586 None:intergenic
AACATGGAGATCATGGTAGG+GGG 0.694332 2_4:+36425740 Msa0326480:three_prime_UTR
AATATGGGAATGTTGCTAGG+TGG 0.778608 2_4:+36424221 Msa0326480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAAAAAATTGAATTTTT+TGG + chr2_4:36423888-36423907 Msa0326480:intron 10.0%
!!! AGTAAAAAGATTGAATTTTT+CGG + chr2_4:36423761-36423780 Msa0326480:intron 15.0%
!!! TTATTGTATACTATTTTTCA+AGG + chr2_4:36424974-36424993 Msa0326480:intron 15.0%
!!! TTATTGTATACTATTTTTCA+AGG + chr2_4:36424974-36424993 Msa0326480:intron 15.0%
!! AAAATAAGATATTTCACTAT+TGG - chr2_4:36425305-36425324 None:intergenic 15.0%
!! TATTGTTAACATCGAATTTA+GGG - chr2_4:36423657-36423676 None:intergenic 20.0%
!! GAAGTAGAAGAAAAAAAAAA+TGG + chr2_4:36423948-36423967 Msa0326480:intron 20.0%
!! ATAGTATACAATAAACTGAA+TGG - chr2_4:36424968-36424987 None:intergenic 20.0%
!!! TTACTTACAGATTTTATTGA+AGG - chr2_4:36425617-36425636 None:intergenic 20.0%
!!! TTCAGATTTTATTTGTTTGT+TGG + chr2_4:36425639-36425658 Msa0326480:intron 20.0%
!! AAAAACAAAAATCTCATCTT+AGG - chr2_4:36425811-36425830 None:intergenic 20.0%
!!! TAAGATGAGATTTTTGTTTT+TGG + chr2_4:36425810-36425829 Msa0326480:three_prime_UTR 20.0%
!!! AAGATGAGATTTTTGTTTTT+GGG + chr2_4:36425811-36425830 Msa0326480:three_prime_UTR 20.0%
!! TTATAACACAATACTGATAA+TGG - chr2_4:36425886-36425905 None:intergenic 20.0%
!!! ATTCAAACTTTAAGAATTGT+AGG + chr2_4:36425908-36425927 Msa0326480:three_prime_UTR 20.0%
!!! TTAATGTTTTTGCAACATTA+GGG - chr2_4:36426041-36426060 None:intergenic 20.0%
!!! TTTAATGTTTTTGCAACATT+AGG - chr2_4:36426042-36426061 None:intergenic 20.0%
! CTATTGTTAACATCGAATTT+AGG - chr2_4:36423658-36423677 None:intergenic 25.0%
!!! TTTTCGGTAATTTGTGTTAA+TGG + chr2_4:36423777-36423796 Msa0326480:intron 25.0%
!! TTTCGGTAATTTGTGTTAAT+GGG + chr2_4:36423778-36423797 Msa0326480:intron 25.0%
!!! TGTTTTTATTTGATCTGTGT+AGG + chr2_4:36424137-36424156 Msa0326480:intron 25.0%
! TAATTGACAAAGATGGTAAA+GGG - chr2_4:36424286-36424305 None:intergenic 25.0%
! ATAATTGACAAAGATGGTAA+AGG - chr2_4:36424287-36424306 None:intergenic 25.0%
! TCGAATATAATTGACAAAGA+TGG - chr2_4:36424293-36424312 None:intergenic 25.0%
!! CTCATATCCTCATAAATTTT+CGG + chr2_4:36424645-36424664 Msa0326480:intron 25.0%
!!! ATATGTTTGTTTTCCACTAT+TGG + chr2_4:36425038-36425057 Msa0326480:intron 25.0%
!!! TATGTTTGTTTTCCACTATT+GGG + chr2_4:36425039-36425058 Msa0326480:intron 25.0%
!!! ATAAGTTTGTTTTCCACTAT+TGG + chr2_4:36425229-36425248 Msa0326480:intron 25.0%
!!! TAAGTTTGTTTTCCACTATT+GGG + chr2_4:36425230-36425249 Msa0326480:intron 25.0%
! TCAAATTATGCTTACTATTG+TGG + chr2_4:36425504-36425523 Msa0326480:CDS 25.0%
! TAATGCCATATCATATTCTT+TGG + chr2_4:36425696-36425715 Msa0326480:intron 25.0%
! ATTATTAGGAATGACAATCA+AGG + chr2_4:36425774-36425793 Msa0326480:three_prime_UTR 25.0%
! TTATTAGGAATGACAATCAA+GGG + chr2_4:36425775-36425794 Msa0326480:three_prime_UTR 25.0%
AGTGAGAGTGAATTGAAAAA+GGG - chr2_4:36423528-36423547 None:intergenic 30.0%
AAGTGAGAGTGAATTGAAAA+AGG - chr2_4:36423529-36423548 None:intergenic 30.0%
AGCCTTAAAAAACACAGATT+CGG - chr2_4:36423718-36423737 None:intergenic 30.0%
!! TCCTGATTTGAGTTTTTCTT+TGG + chr2_4:36423831-36423850 Msa0326480:intron 30.0%
!! CCTGATTTGAGTTTTTCTTT+GGG + chr2_4:36423832-36423851 Msa0326480:intron 30.0%
!! CTGATTTGAGTTTTTCTTTG+GGG + chr2_4:36423833-36423852 Msa0326480:intron 30.0%
!! TGATTTGAGTTTTTCTTTGG+GGG + chr2_4:36423834-36423853 Msa0326480:intron 30.0%
AGTTACACTCTATAACCTTA+AGG + chr2_4:36423972-36423991 Msa0326480:CDS 30.0%
! TATTCATATGATGGAACTGA+TGG - chr2_4:36424205-36424224 None:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG + chr2_4:36424205-36424224 Msa0326480:CDS 30.0%
CAGTTCCATCATATGAATAT+GGG + chr2_4:36424206-36424225 Msa0326480:CDS 30.0%
ACATTCCCATATTCATATGA+TGG - chr2_4:36424214-36424233 None:intergenic 30.0%
!! ATTGAGTTTTGTGACTATAG+TGG + chr2_4:36424393-36424412 Msa0326480:intron 30.0%
! ATAAATTTTCGGAATCTGGT+TGG + chr2_4:36424656-36424675 Msa0326480:intron 30.0%
! TGGACATCAATTTAGAGTAT+TGG + chr2_4:36424676-36424695 Msa0326480:intron 30.0%
!!! ATTTTTCAAGGCTATGTCTA+CGG + chr2_4:36424986-36425005 Msa0326480:intron 30.0%
TCATATCTCACTTGATCTAA+TGG + chr2_4:36425075-36425094 Msa0326480:intron 30.0%
! AACAAGTTTGCTTTCACTAT+TGG - chr2_4:36425114-36425133 None:intergenic 30.0%
!!! ATTTTTCAAGGCTATGTCTA+TGG + chr2_4:36424986-36425005 Msa0326480:intron 30.0%
TGGTGCACAAATAAGATATT+TGG + chr2_4:36425196-36425215 Msa0326480:intron 30.0%
TAGATCAAGCGAGATATTAA+GGG - chr2_4:36425265-36425284 None:intergenic 30.0%
TTAGATCAAGCGAGATATTA+AGG - chr2_4:36425266-36425285 None:intergenic 30.0%
TAATATCTCGCTTGATCTAA+TGG + chr2_4:36425266-36425285 Msa0326480:intron 30.0%
AATCTGCAATTCGTATAACA+TGG + chr2_4:36425724-36425743 Msa0326480:exon 30.0%
TCACGTGACATTAAAATTTC+TGG + chr2_4:36425981-36426000 Msa0326480:three_prime_UTR 30.0%
CACGTGACATTAAAATTTCT+GGG + chr2_4:36425982-36426001 Msa0326480:three_prime_UTR 30.0%
ACGTGACATTAAAATTTCTG+GGG + chr2_4:36425983-36426002 Msa0326480:three_prime_UTR 30.0%
!!! TCCCGAATCTGTGTTTTTTA+AGG + chr2_4:36423713-36423732 Msa0326480:intron 35.0%
GCCTTAAAAAACACAGATTC+GGG - chr2_4:36423717-36423736 None:intergenic 35.0%
CCCAAAGAAAAACTCAAATC+AGG - chr2_4:36423835-36423854 None:intergenic 35.0%
TATAACCTTAAGGCTGAATC+TGG + chr2_4:36423982-36424001 Msa0326480:CDS 35.0%
ATGAATATGGGAATGTTGCT+AGG + chr2_4:36424218-36424237 Msa0326480:CDS 35.0%
!! GATGACGATGTTGATTTGTT+TGG + chr2_4:36424528-36424547 Msa0326480:CDS 35.0%
CCAGATTCCGAAAATTTATG+AGG - chr2_4:36424655-36424674 None:intergenic 35.0%
! CCTCATAAATTTTCGGAATC+TGG + chr2_4:36424652-36424671 Msa0326480:intron 35.0%
! TTTCTGCTGATTGCATTATC+AGG + chr2_4:36424700-36424719 Msa0326480:intron 35.0%
TGGGAAATCATCTGTATTGT+TGG + chr2_4:36424723-36424742 Msa0326480:CDS 35.0%
TTCTTCAAGCTTCTTCATGT+CGG - chr2_4:36424773-36424792 None:intergenic 35.0%
ACGGTGCACAAATAAGATAT+TGG + chr2_4:36425005-36425024 Msa0326480:intron 35.0%
TATCTCACTTGATCTAATGG+TGG + chr2_4:36425078-36425097 Msa0326480:intron 35.0%
! AGTGAAAGCAAACTTGTTCA+CGG + chr2_4:36425116-36425135 Msa0326480:intron 35.0%
! TCTTGTTTCCGTTGACAATA+TGG + chr2_4:36425531-36425550 Msa0326480:CDS 35.0%
ATCCTCAACCATATTGTCAA+CGG - chr2_4:36425542-36425561 None:intergenic 35.0%
CTGCACCAAAGAATATGATA+TGG - chr2_4:36425704-36425723 None:intergenic 35.0%
TTCGTATAACATGGAGATCA+TGG + chr2_4:36425733-36425752 Msa0326480:three_prime_UTR 35.0%
TATAACATGGAGATCATGGT+AGG + chr2_4:36425737-36425756 Msa0326480:three_prime_UTR 35.0%
ATAACATGGAGATCATGGTA+GGG + chr2_4:36425738-36425757 Msa0326480:three_prime_UTR 35.0%
GGGCAGAAATTGCAATTATT+AGG + chr2_4:36425760-36425779 Msa0326480:three_prime_UTR 35.0%
AAATGACAGCAACAACAAGT+AGG - chr2_4:36425839-36425858 None:intergenic 35.0%
!! ATTAGGGTAATTTGCTTTGC+CGG - chr2_4:36426025-36426044 None:intergenic 35.0%
GAGTTTACCTGTGTTAAGAG+AGG - chr2_4:36423594-36423613 None:intergenic 40.0%
TCAAACCAGATTCAGCCTTA+AGG - chr2_4:36423990-36424009 None:intergenic 40.0%
TGATGTAACTGCGTGTAAGA+AGG - chr2_4:36424029-36424048 None:intergenic 40.0%
TTACACGCAGTTACATCACT+GGG + chr2_4:36424031-36424050 Msa0326480:CDS 40.0%
!! TGATGTCATCCTTTGAAGCT+TGG - chr2_4:36424165-36424184 None:intergenic 40.0%
AATATGGGAATGTTGCTAGG+TGG + chr2_4:36424221-36424240 Msa0326480:CDS 40.0%
TGTGACTATAGTGGTGTTTC+TGG + chr2_4:36424402-36424421 Msa0326480:intron 40.0%
!! TATAGTGGTGTTTCTGGTGA+GGG + chr2_4:36424408-36424427 Msa0326480:intron 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG + chr2_4:36424542-36424561 Msa0326480:CDS 40.0%
! TGCTGATTGCATTATCAGGT+GGG + chr2_4:36424704-36424723 Msa0326480:intron 40.0%
TATTGTTGGATGTGAAGCCA+TGG + chr2_4:36424737-36424756 Msa0326480:CDS 40.0%
ATTGTTGGATGTGAAGCCAT+GGG + chr2_4:36424738-36424757 Msa0326480:CDS 40.0%
TGAGATCTGTTCAGTTGGAA+GGG + chr2_4:36424797-36424816 Msa0326480:CDS 40.0%
! TTCAGTTGGAAGGGTTGTTT+TGG + chr2_4:36424806-36424825 Msa0326480:CDS 40.0%
!! TCAGTTGGAAGGGTTGTTTT+GGG + chr2_4:36424807-36424826 Msa0326480:CDS 40.0%
CAATAAACTGAATGGTGCAC+AGG - chr2_4:36425150-36425169 None:intergenic 40.0%
TATCTCGCTTGATCTAATGG+TGG + chr2_4:36425269-36425288 Msa0326480:intron 40.0%
! ATAGCCAAACTTGTTCCTGT+TGG + chr2_4:36425463-36425482 Msa0326480:intron 40.0%
! TAGCCAAACTTGTTCCTGTT+GGG + chr2_4:36425464-36425483 Msa0326480:intron 40.0%
! AAACTTGTTCCTGTTGGGTA+CGG + chr2_4:36425469-36425488 Msa0326480:CDS 40.0%
TTCCGTTGACAATATGGTTG+AGG + chr2_4:36425537-36425556 Msa0326480:CDS 40.0%
CTCTGGACATACTCATTGAT+GGG - chr2_4:36425580-36425599 None:intergenic 40.0%
ACTCTGGACATACTCATTGA+TGG - chr2_4:36425581-36425600 None:intergenic 40.0%
TAACATGGAGATCATGGTAG+GGG + chr2_4:36425739-36425758 Msa0326480:three_prime_UTR 40.0%
!! TTAGGGTAATTTGCTTTGCC+GGG - chr2_4:36426024-36426043 None:intergenic 40.0%
CTTACACGCAGTTACATCAC+TGG + chr2_4:36424030-36424049 Msa0326480:CDS 45.0%
GTGTAGGTACCAAGCTTCAA+AGG + chr2_4:36424153-36424172 Msa0326480:intron 45.0%
!! CTATAGTGGTGTTTCTGGTG+AGG + chr2_4:36424407-36424426 Msa0326480:intron 45.0%
CACTGTCGAATCTTCTCTTG+TGG + chr2_4:36424440-36424459 Msa0326480:CDS 45.0%
TCCTCCAGTTTCTGACACAA+AGG + chr2_4:36424482-36424501 Msa0326480:CDS 45.0%
AGAGACTGAGGAAGAGAAGA+AGG + chr2_4:36424554-36424573 Msa0326480:CDS 45.0%
! CTTTTTGCCAGATGCCTTCA+CGG - chr2_4:36424601-36424620 None:intergenic 45.0%
! CTGCTGATTGCATTATCAGG+TGG + chr2_4:36424703-36424722 Msa0326480:intron 45.0%
AGCAGTGAGATCTGTTCAGT+TGG + chr2_4:36424792-36424811 Msa0326480:CDS 45.0%
GTGAGATCTGTTCAGTTGGA+AGG + chr2_4:36424796-36424815 Msa0326480:CDS 45.0%
!! CAGTTGGAAGGGTTGTTTTG+GGG + chr2_4:36424808-36424827 Msa0326480:CDS 45.0%
GCGACTTAATGACCCAATAG+TGG - chr2_4:36425054-36425073 None:intergenic 45.0%
GGGACTTATTGACCCAATAG+TGG - chr2_4:36425245-36425264 None:intergenic 45.0%
GTACCCAACAGGAACAAGTT+TGG - chr2_4:36425470-36425489 None:intergenic 45.0%
TTCTTGATACCGTACCCAAC+AGG - chr2_4:36425481-36425500 None:intergenic 45.0%
TGTCCAGAGTTGTGACATTG+TGG + chr2_4:36425591-36425610 Msa0326480:CDS 45.0%
AACATGGAGATCATGGTAGG+GGG + chr2_4:36425740-36425759 Msa0326480:three_prime_UTR 45.0%
!! TAGGGTAATTTGCTTTGCCG+GGG - chr2_4:36426023-36426042 None:intergenic 45.0%
AAGAGAGGCGAGGAGATTGA+AGG - chr2_4:36423579-36423598 None:intergenic 50.0%
TACCTGTGTTAAGAGAGGCG+AGG - chr2_4:36423589-36423608 None:intergenic 50.0%
ACGCAGTTACATCACTGGGT+AGG + chr2_4:36424035-36424054 Msa0326480:intron 50.0%
TGTGTCAGAAACTGGAGGAG+TGG - chr2_4:36424481-36424500 None:intergenic 50.0%
GCCTTTGTGTCAGAAACTGG+AGG - chr2_4:36424486-36424505 None:intergenic 50.0%
GCAGCCTTTGTGTCAGAAAC+TGG - chr2_4:36424489-36424508 None:intergenic 50.0%
AGAAGAAGGCAGCTGAGGAA+CGG + chr2_4:36424568-36424587 Msa0326480:CDS 50.0%
ATGTCGGTCTCATCATCCCA+TGG - chr2_4:36424757-36424776 None:intergenic 50.0%
AGGCCACAATGTCACAACTC+TGG - chr2_4:36425597-36425616 None:intergenic 50.0%
CTCCTCGCCTCTCTTAACAC+AGG + chr2_4:36423584-36423603 Msa0326480:CDS 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG + chr2_4:36424414-36424433 Msa0326480:CDS 55.0%
CACAAAGGCTGCTGAAGCTG+AGG + chr2_4:36424497-36424516 Msa0326480:CDS 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG + chr2_4:36424563-36424582 Msa0326480:CDS 55.0%
GAAGAAGGCAGCTGAGGAAC+GGG + chr2_4:36424569-36424588 Msa0326480:CDS 55.0%
GGGTGTCCTCTAACAAACCC+CGG + chr2_4:36426003-36426022 Msa0326480:three_prime_UTR 55.0%
!! GCTTTGCCGGGGTTTGTTAG+AGG - chr2_4:36426012-36426031 None:intergenic 55.0%
!! GCAGCAGCCGTGAAGGCATC+TGG + chr2_4:36424591-36424610 Msa0326480:CDS 65.0%
GGAACGGGCAGCAGCCGTGA+AGG + chr2_4:36424584-36424603 Msa0326480:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 36423510 36426074 36423510 ID=Msa0326480;Name=Msa0326480
chr2_4 mRNA 36423510 36426074 36423510 ID=Msa0326480-mRNA-1;Parent=Msa0326480;Name=Msa0326480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.85|0.75|1|0.42|0.25|8|308|265
chr2_4 exon 36423510 36423605 36423510 ID=Msa0326480-mRNA-1:exon:11198;Parent=Msa0326480-mRNA-1
chr2_4 exon 36423955 36424052 36423955 ID=Msa0326480-mRNA-1:exon:11199;Parent=Msa0326480-mRNA-1
chr2_4 exon 36424159 36424275 36424159 ID=Msa0326480-mRNA-1:exon:11200;Parent=Msa0326480-mRNA-1
chr2_4 exon 36424413 36424627 36424413 ID=Msa0326480-mRNA-1:exon:11201;Parent=Msa0326480-mRNA-1
chr2_4 exon 36424722 36424829 36424722 ID=Msa0326480-mRNA-1:exon:11202;Parent=Msa0326480-mRNA-1
chr2_4 exon 36425467 36425628 36425467 ID=Msa0326480-mRNA-1:exon:11203;Parent=Msa0326480-mRNA-1
chr2_4 exon 36425724 36425929 36425724 ID=Msa0326480-mRNA-1:exon:11204;Parent=Msa0326480-mRNA-1
chr2_4 exon 36425971 36426074 36425971 ID=Msa0326480-mRNA-1:exon:11205;Parent=Msa0326480-mRNA-1
chr2_4 CDS 36423510 36423605 36423510 ID=Msa0326480-mRNA-1:cds;Parent=Msa0326480-mRNA-1
chr2_4 CDS 36423955 36424052 36423955 ID=Msa0326480-mRNA-1:cds;Parent=Msa0326480-mRNA-1
chr2_4 CDS 36424159 36424275 36424159 ID=Msa0326480-mRNA-1:cds;Parent=Msa0326480-mRNA-1
chr2_4 CDS 36424413 36424627 36424413 ID=Msa0326480-mRNA-1:cds;Parent=Msa0326480-mRNA-1
chr2_4 CDS 36424722 36424829 36424722 ID=Msa0326480-mRNA-1:cds;Parent=Msa0326480-mRNA-1
chr2_4 CDS 36425467 36425628 36425467 ID=Msa0326480-mRNA-1:cds;Parent=Msa0326480-mRNA-1
chr2_4 CDS 36425724 36425725 36425724 ID=Msa0326480-mRNA-1:cds;Parent=Msa0326480-mRNA-1
chr2_4 three_prime_UTR 36425726 36425929 36425726 ID=Msa0326480-mRNA-1:three_prime_utr;Parent=Msa0326480-mRNA-1
chr2_4 three_prime_UTR 36425971 36426074 36425971 ID=Msa0326480-mRNA-1:three_prime_utr;Parent=Msa0326480-mRNA-1
Gene Sequence

>Msa0326480

CTATATAAAACAAAACCCTTTTTCAATTCACTCTCACTTTGCATTGAATCTCGTTGCTACTACTTGCCTTCAATCTCCTCGCCTCTCTTAACACAGAAGAAAAAAAAAATGGCAGTTACACTCTATAACCTTAAGGCTGAATCTGGTTTGAAGAAGCTTGATGAGTACCTTCTTACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATCACTGTTTATGCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTGCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTCGAATCTTCTCTTGTGGCTGAAGAGACTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCTGCTGAAGCTGAGGATGAAGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTATTGTTGGATGTGAAGCCATGGGATGATGAGACCGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTTTGGGCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTTGACAATATGGTTGAGGATTATCTTACTGTTGAGCCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATCTAA

Protein sequence

>Msa0326480

LYKTKPFFNSLSLCIESRCYYLPSISSPLLTQKKKKMAVTLYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYAALPSVPSYEYGNVARWYKHIDALLRIAGVSGEGSGVTVESSLVAEETVATPPVSDTKAAEAEDEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWAKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI*