Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0919020 | XP_013443308.1 | 94.776 | 134 | 7 | 0 | 1 | 134 | 1 | 134 | 9.09e-77 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0784860 | Msa0919020 | 0.841580 | 4.359549e-58 | -8.615850e-47 |
| Msa0817730 | Msa0919020 | 0.806939 | 6.445992e-50 | -8.615850e-47 |
| Msa0858180 | Msa0919020 | 0.804368 | 2.234373e-49 | -8.615850e-47 |
| Msa0870150 | Msa0919020 | 0.806090 | 9.736168e-50 | -8.615850e-47 |
| Msa0891510 | Msa0919020 | 0.851303 | 9.687922e-61 | -8.615850e-47 |
| Msa0919020 | Msa0956410 | 0.872672 | 2.655964e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0919020 | MtrunA17_Chr6g0472331 | 94.776 | 134 | 7 | 0 | 1 | 134 | 1 | 134 | 8.36e-81 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGTGTTCTTCTCATTGT+TGG | 0.219593 | 6_2:-49440779 | None:intergenic |
| CACAGCTATGGGTTCTTCTA+TGG | 0.237676 | 6_2:+49438590 | None:intergenic |
| TTTGTCAAAGTCGCCATTAT+AGG | 0.294994 | 6_2:-49441433 | None:intergenic |
| TTGTCAAAGTCGCCATTATA+GGG | 0.344757 | 6_2:-49441432 | None:intergenic |
| AAGAACGACAGCCTTTGTTT+TGG | 0.349255 | 6_2:-49438710 | None:intergenic |
| CGTAAACTACCTCAATACTA+TGG | 0.373289 | 6_2:+49438662 | Msa0919020:CDS |
| AAAGTAAAACCACGCCGTTT+TGG | 0.388163 | 6_2:+49438625 | Msa0919020:CDS |
| CATGGTGAGGTTTCAAATCA+AGG | 0.391023 | 6_2:-49438800 | None:intergenic |
| GCCGTTCAATTCAAATGATC+AGG | 0.427383 | 6_2:+49440814 | Msa0919020:CDS |
| CTTCTTTGCAACAGATTCGA+TGG | 0.428766 | 6_2:+49440754 | Msa0919020:intron |
| AAAGGTGTAGCGCCCTATAA+TGG | 0.435667 | 6_2:+49441420 | Msa0919020:CDS |
| ATCTTATACCTGAAGGTGTA+TGG | 0.459090 | 6_2:-49438842 | None:intergenic |
| ATCACAGCCGTCAAATTCTT+CGG | 0.468648 | 6_2:+49438742 | Msa0919020:CDS |
| AGAAAACACCATACACCTTC+AGG | 0.480517 | 6_2:+49438834 | Msa0919020:CDS |
| AAGGGTTGATTCAGAGCTAT+CGG | 0.489516 | 6_2:-49438781 | None:intergenic |
| GAAGAATTTGACGGCTGTGA+TGG | 0.489726 | 6_2:-49438740 | None:intergenic |
| TTCTTTGCAACAGATTCGAT+GGG | 0.490944 | 6_2:+49440755 | Msa0919020:intron |
| AAGAATTTGACGGCTGTGAT+GGG | 0.496731 | 6_2:-49438739 | None:intergenic |
| TATAATGGCGACTTTGACAA+AGG | 0.504926 | 6_2:+49441435 | Msa0919020:CDS |
| ACCTGATCATTTGAATTGAA+CGG | 0.508297 | 6_2:-49440815 | None:intergenic |
| GATCGAGCCGAAGAATTTGA+CGG | 0.534480 | 6_2:-49438749 | None:intergenic |
| ATGGTGAGGTTTCAAATCAA+GGG | 0.541262 | 6_2:-49438799 | None:intergenic |
| AGGGTTGATTCAGAGCTATC+GGG | 0.541321 | 6_2:-49438780 | None:intergenic |
| CTGGTGCGGCTTCCATGGTG+AGG | 0.559379 | 6_2:-49438813 | None:intergenic |
| AAGAAGCTTCCATAGTATTG+AGG | 0.564182 | 6_2:-49438671 | None:intergenic |
| CAAGTAGAAAATGAAAGCAA+AGG | 0.600178 | 6_2:+49441402 | Msa0919020:CDS |
| CGTACAATGTTCCAAAACAA+AGG | 0.607657 | 6_2:+49438699 | Msa0919020:CDS |
| TTCGTCTGTCCAAAACGGCG+TGG | 0.652255 | 6_2:-49438634 | None:intergenic |
| CTTGATTTGAAACCTCACCA+TGG | 0.689590 | 6_2:+49438801 | Msa0919020:CDS |
| GTCCAACAATGAGAAGAACA+CGG | 0.724140 | 6_2:+49440777 | Msa0919020:CDS |
| CAACAATGAGAAGAACACGG+AGG | 0.824433 | 6_2:+49440780 | Msa0919020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr6_2:49439315-49439334 | Msa0919020:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr6_2:49439314-49439333 | Msa0919020:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr6_2:49439315-49439334 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr6_2:49439314-49439333 | None:intergenic | 0.0% |
| !!! | AGATATTTATATTTTTTTAG+AGG | + | chr6_2:49439729-49439748 | Msa0919020:intron | 10.0% |
| !!! | GATATTTATATTTTTTTAGA+GGG | + | chr6_2:49439730-49439749 | Msa0919020:intron | 10.0% |
| !!! | TCGTATATAATTATATTTTT+TGG | + | chr6_2:49440011-49440030 | Msa0919020:intron | 10.0% |
| !!! | TTTTTTTTTAAATAATGTAG+TGG | - | chr6_2:49440311-49440330 | None:intergenic | 10.0% |
| !! | ATATAATAGACATTTAAAAA+AGG | - | chr6_2:49440637-49440656 | None:intergenic | 10.0% |
| !!! | TTTTTTAAATGTCTATTATA+TGG | + | chr6_2:49440636-49440655 | Msa0919020:intron | 10.0% |
| !!! | TTTTTAAATGTCTATTATAT+GGG | + | chr6_2:49440637-49440656 | Msa0919020:intron | 10.0% |
| !!! | AATCTAAAATTAGATATTTT+TGG | + | chr6_2:49441275-49441294 | Msa0919020:intron | 10.0% |
| !!! | CATTTATCGATTTTTTTTTA+AGG | - | chr6_2:49438966-49438985 | None:intergenic | 15.0% |
| !! | ATTTCGTTATTAAAGTTTAT+TGG | + | chr6_2:49439826-49439845 | Msa0919020:intron | 15.0% |
| !! | TTTCGTTATTAAAGTTTATT+GGG | + | chr6_2:49439827-49439846 | Msa0919020:intron | 15.0% |
| !! | TAATAAATTCATACTCTATT+AGG | + | chr6_2:49440138-49440157 | Msa0919020:intron | 15.0% |
| !!! | TTTTAAATGTCTATTATATG+GGG | + | chr6_2:49440638-49440657 | Msa0919020:intron | 15.0% |
| !! | ACATTTAAGAAGAATAAATA+GGG | - | chr6_2:49441011-49441030 | None:intergenic | 15.0% |
| !! | TTTAAGTATATTAATTCAGT+TGG | + | chr6_2:49441039-49441058 | Msa0919020:intron | 15.0% |
| !!! | TGGTTTGTGTATAAAATATA+AGG | + | chr6_2:49439107-49439126 | Msa0919020:intron | 20.0% |
| !! | AGGTTAAAAAAAATTAGATG+AGG | + | chr6_2:49439127-49439146 | Msa0919020:intron | 20.0% |
| !! | TATAATGGTAAACATGAAAA+AGG | + | chr6_2:49440104-49440123 | Msa0919020:intron | 20.0% |
| !! | TTAGCAGTTATGTTAATTTA+TGG | + | chr6_2:49440206-49440225 | Msa0919020:intron | 20.0% |
| !! | TAGCAGTTATGTTAATTTAT+GGG | + | chr6_2:49440207-49440226 | Msa0919020:intron | 20.0% |
| !! | ATAAAACGTTTATACATTGA+CGG | - | chr6_2:49440355-49440374 | None:intergenic | 20.0% |
| !! | TATTATCACATCTACTAATA+AGG | + | chr6_2:49440392-49440411 | Msa0919020:intron | 20.0% |
| !! | TTTAAATGTCTATTATATGG+GGG | + | chr6_2:49440639-49440658 | Msa0919020:intron | 20.0% |
| !! | AACATTTATTGTCTTTAGTT+AGG | + | chr6_2:49440671-49440690 | Msa0919020:intron | 20.0% |
| !! | ACATTTATTGTCTTTAGTTA+GGG | + | chr6_2:49440672-49440691 | Msa0919020:intron | 20.0% |
| !! | AAAAAACTATACAATTGAGT+TGG | - | chr6_2:49440898-49440917 | None:intergenic | 20.0% |
| !! | CACATTTAAGAAGAATAAAT+AGG | - | chr6_2:49441012-49441031 | None:intergenic | 20.0% |
| !!! | TCTATAGTCTTTTTTTTTTG+CGG | - | chr6_2:49441114-49441133 | None:intergenic | 20.0% |
| ! | AAAAACAATCTTATACCTGA+AGG | - | chr6_2:49438852-49438871 | None:intergenic | 25.0% |
| ! | AACAATGCATTATATATGCA+AGG | + | chr6_2:49439050-49439069 | Msa0919020:intron | 25.0% |
| !!! | TTTATACACAAACCACTTTT+GGG | - | chr6_2:49439102-49439121 | None:intergenic | 25.0% |
| !! | TTTTATACACAAACCACTTT+TGG | - | chr6_2:49439103-49439122 | None:intergenic | 25.0% |
| ! | TAACCTAATTGCTCAAAATT+AGG | + | chr6_2:49439191-49439210 | Msa0919020:intron | 25.0% |
| !! | TAACCTAATTTTGAGCAATT+AGG | - | chr6_2:49439197-49439216 | None:intergenic | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+GGG | - | chr6_2:49439385-49439404 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | + | chr6_2:49439428-49439447 | Msa0919020:intron | 25.0% |
| !! | CACCTTCTAAAAAAATAAGT+GGG | + | chr6_2:49439468-49439487 | Msa0919020:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | chr6_2:49439533-49439552 | None:intergenic | 25.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | + | chr6_2:49439575-49439594 | Msa0919020:intron | 25.0% |
| ! | AAATTCAACATGAACATGAA+GGG | + | chr6_2:49439792-49439811 | Msa0919020:intron | 25.0% |
| ! | TTACGAAGATATTATGTTAG+TGG | - | chr6_2:49439946-49439965 | None:intergenic | 25.0% |
| ! | ATATCGAAAGATGTTTAAGA+AGG | - | chr6_2:49440248-49440267 | None:intergenic | 25.0% |
| ! | TGTAATGAGTTAAAAACACT+TGG | - | chr6_2:49440428-49440447 | None:intergenic | 25.0% |
| !! | TTTTTCGCCTATAAGATTAT+AGG | + | chr6_2:49440509-49440528 | Msa0919020:intron | 25.0% |
| !! | TTTTTCGCCTATAATCTTAT+AGG | - | chr6_2:49440519-49440538 | None:intergenic | 25.0% |
| ! | AGTGAAGAAAAATTCAAGTA+AGG | + | chr6_2:49440542-49440561 | Msa0919020:intron | 25.0% |
| ! | GAAGAATAAATAGGGAATTT+AGG | - | chr6_2:49441003-49441022 | None:intergenic | 25.0% |
| !! | GTATATTAATTCAGTTGGTA+AGG | + | chr6_2:49441044-49441063 | Msa0919020:intron | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | chr6_2:49441066-49441085 | Msa0919020:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+CGG | + | chr6_2:49441071-49441090 | Msa0919020:intron | 25.0% |
| ! | GTTCAATGTTTATAGTTTGA+TGG | - | chr6_2:49441244-49441263 | None:intergenic | 25.0% |
| !!! | ATTTTTGGTGCTTTTCTTTT+TGG | + | chr6_2:49441290-49441309 | Msa0919020:intron | 25.0% |
| !! | TTATACACAAACCACTTTTG+GGG | - | chr6_2:49439101-49439120 | None:intergenic | 30.0% |
| GATGTTGCTAAGGTATAATT+AGG | + | chr6_2:49439149-49439168 | Msa0919020:intron | 30.0% | |
| ! | ATTTACGTACTGTTTGGTTT+AGG | - | chr6_2:49439286-49439305 | None:intergenic | 30.0% |
| CATTCTATTTACGTACTGTT+TGG | - | chr6_2:49439292-49439311 | None:intergenic | 30.0% | |
| ! | ATATATATATGGGGTTTGCT+AGG | + | chr6_2:49439354-49439373 | Msa0919020:intron | 30.0% |
| !!! | ACACCCACTAGTTTTTATTA+AGG | + | chr6_2:49439379-49439398 | Msa0919020:intron | 30.0% |
| CACACCTTAATAAAAACTAG+TGG | - | chr6_2:49439386-49439405 | None:intergenic | 30.0% | |
| ! | TTTTAGCAACATTCACCTTA+AGG | - | chr6_2:49439446-49439465 | None:intergenic | 30.0% |
| ! | GCACCTTCTAAAAAAATAAG+TGG | + | chr6_2:49439467-49439486 | Msa0919020:intron | 30.0% |
| !!! | CACCCACTTATTTTTTTAGA+AGG | - | chr6_2:49439473-49439492 | None:intergenic | 30.0% |
| TGTATATTAGCAACTCCTAT+AGG | + | chr6_2:49439491-49439510 | Msa0919020:intron | 30.0% | |
| !!! | ACACCCACTTATTTTTTAGA+AGG | + | chr6_2:49439527-49439546 | Msa0919020:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | chr6_2:49439534-49439553 | None:intergenic | 30.0% |
| GAAATTCAACATGAACATGA+AGG | + | chr6_2:49439791-49439810 | Msa0919020:intron | 30.0% | |
| AATGTTCTATGTGGATAGTT+CGG | - | chr6_2:49440286-49440305 | None:intergenic | 30.0% | |
| CTCGAAAAATAAAGCATAGT+TGG | - | chr6_2:49440698-49440717 | None:intergenic | 30.0% | |
| !!! | CTATGCTTTATTTTTCGAGA+TGG | + | chr6_2:49440699-49440718 | Msa0919020:intron | 30.0% |
| !!! | TTATTGACCACCGTATTTTT+TGG | + | chr6_2:49440728-49440747 | Msa0919020:intron | 30.0% |
| !!! | TATTGACCACCGTATTTTTT+GGG | + | chr6_2:49440729-49440748 | Msa0919020:intron | 30.0% |
| AAAGAAGAGCCCAAAAAATA+CGG | - | chr6_2:49440741-49440760 | None:intergenic | 30.0% | |
| ACCTGATCATTTGAATTGAA+CGG | - | chr6_2:49440818-49440837 | None:intergenic | 30.0% | |
| TTATCACAAGACAAGAAGAA+AGG | - | chr6_2:49440868-49440887 | None:intergenic | 30.0% | |
| GCATAATATATGTAAGGTTC+GGG | + | chr6_2:49441072-49441091 | Msa0919020:intron | 30.0% | |
| CATAATATATGTAAGGTTCG+GGG | + | chr6_2:49441073-49441092 | Msa0919020:intron | 30.0% | |
| !!! | ATAGTCTTTTTTTTTTGCGG+TGG | - | chr6_2:49441111-49441130 | None:intergenic | 30.0% |
| AAAAATGTAAACACATGCCT+TGG | - | chr6_2:49441207-49441226 | None:intergenic | 30.0% | |
| ! | AAGGCATGTGTTTACATTTT+TGG | + | chr6_2:49441206-49441225 | Msa0919020:intron | 30.0% |
| !!! | TTTTGGTGTTGGGATATTTT+TGG | + | chr6_2:49441307-49441326 | Msa0919020:intron | 30.0% |
| !!! | GATATTTTTGGTGTTTGTAG+AGG | + | chr6_2:49441319-49441338 | Msa0919020:intron | 30.0% |
| TGTAGAGGAGATAAATATAC+TGG | + | chr6_2:49441334-49441353 | Msa0919020:intron | 30.0% | |
| TGGTCATAAAAGTGACTAAT+GGG | + | chr6_2:49441354-49441373 | Msa0919020:intron | 30.0% | |
| AATGGGTGATTTATATGTGT+AGG | + | chr6_2:49441371-49441390 | Msa0919020:intron | 30.0% | |
| ! | TGCTTTCATTTTCTACTTGT+GGG | - | chr6_2:49441401-49441420 | None:intergenic | 30.0% |
| ! | TTGCTTTCATTTTCTACTTG+TGG | - | chr6_2:49441402-49441421 | None:intergenic | 30.0% |
| CAAGTAGAAAATGAAAGCAA+AGG | + | chr6_2:49441402-49441421 | Msa0919020:CDS | 30.0% | |
| ! | TGTTTTTCGTCTGTCCAAAA+CGG | - | chr6_2:49438642-49438661 | None:intergenic | 35.0% |
| CGTAAACTACCTCAATACTA+TGG | + | chr6_2:49438662-49438681 | Msa0919020:CDS | 35.0% | |
| AAGAAGCTTCCATAGTATTG+AGG | - | chr6_2:49438674-49438693 | None:intergenic | 35.0% | |
| CGTACAATGTTCCAAAACAA+AGG | + | chr6_2:49438699-49438718 | Msa0919020:CDS | 35.0% | |
| ATGGTGAGGTTTCAAATCAA+GGG | - | chr6_2:49438802-49438821 | None:intergenic | 35.0% | |
| ! | ATCTTATACCTGAAGGTGTA+TGG | - | chr6_2:49438845-49438864 | None:intergenic | 35.0% |
| ACACAAACCTCTAGTTAAGT+CGG | - | chr6_2:49438996-49439015 | None:intergenic | 35.0% | |
| TGCATTATATATGCAAGGTC+CGG | + | chr6_2:49439055-49439074 | Msa0919020:intron | 35.0% | |
| ATTAGATGAGGATGTTGCTA+AGG | + | chr6_2:49439139-49439158 | Msa0919020:intron | 35.0% | |
| !! | TTGTTATGCAAAGCGTTGAA+AGG | + | chr6_2:49439232-49439251 | Msa0919020:intron | 35.0% |
| ! | AGCGTTGAAAGGATTATTAC+TGG | + | chr6_2:49439243-49439262 | Msa0919020:intron | 35.0% |
| GTTGAAAGGATTATTACTGG+CGG | + | chr6_2:49439246-49439265 | Msa0919020:intron | 35.0% | |
| GTATCTTAGCAAATGCCTAT+AGG | - | chr6_2:49439509-49439528 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+AGG | - | chr6_2:49439593-49439612 | None:intergenic | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | chr6_2:49439614-49439633 | Msa0919020:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr6_2:49439620-49439639 | None:intergenic | 35.0% |
| AAGGAAGCAATGACTTTATG+AGG | + | chr6_2:49440561-49440580 | Msa0919020:intron | 35.0% | |
| TTCTTTGCAACAGATTCGAT+GGG | + | chr6_2:49440755-49440774 | Msa0919020:intron | 35.0% | |
| !!! | TCTTTTTTTTTTGCGGTGGT+CGG | - | chr6_2:49441107-49441126 | None:intergenic | 35.0% |
| TTAGACTACCTAGAAAACCA+AGG | + | chr6_2:49441187-49441206 | Msa0919020:intron | 35.0% | |
| !!! | ATGTGTTTACATTTTTGGCG+TGG | + | chr6_2:49441211-49441230 | Msa0919020:intron | 35.0% |
| !!! | GTGCTTTTCTTTTTGGTGTT+GGG | + | chr6_2:49441297-49441316 | Msa0919020:intron | 35.0% |
| CTGGTCATAAAAGTGACTAA+TGG | + | chr6_2:49441353-49441372 | Msa0919020:intron | 35.0% | |
| TTGTCAAAGTCGCCATTATA+GGG | - | chr6_2:49441435-49441454 | None:intergenic | 35.0% | |
| TTTGTCAAAGTCGCCATTAT+AGG | - | chr6_2:49441436-49441455 | None:intergenic | 35.0% | |
| TATAATGGCGACTTTGACAA+AGG | + | chr6_2:49441435-49441454 | Msa0919020:CDS | 35.0% | |
| ! | AAAGTAAAACCACGCCGTTT+TGG | + | chr6_2:49438625-49438644 | Msa0919020:CDS | 40.0% |
| !! | AAGAACGACAGCCTTTGTTT+TGG | - | chr6_2:49438713-49438732 | None:intergenic | 40.0% |
| AAGAATTTGACGGCTGTGAT+GGG | - | chr6_2:49438742-49438761 | None:intergenic | 40.0% | |
| ATCACAGCCGTCAAATTCTT+CGG | + | chr6_2:49438742-49438761 | Msa0919020:CDS | 40.0% | |
| ! | AAGGGTTGATTCAGAGCTAT+CGG | - | chr6_2:49438784-49438803 | None:intergenic | 40.0% |
| CATGGTGAGGTTTCAAATCA+AGG | - | chr6_2:49438803-49438822 | None:intergenic | 40.0% | |
| ! | CTTGATTTGAAACCTCACCA+TGG | + | chr6_2:49438801-49438820 | Msa0919020:CDS | 40.0% |
| !! | TGAAGGTGTATGGTGTTTTC+TGG | - | chr6_2:49438835-49438854 | None:intergenic | 40.0% |
| AGAAAACACCATACACCTTC+AGG | + | chr6_2:49438834-49438853 | Msa0919020:CDS | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | + | chr6_2:49439056-49439075 | Msa0919020:intron | 40.0% | |
| CATTATATATGCAAGGTCCG+GGG | + | chr6_2:49439057-49439076 | Msa0919020:intron | 40.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr6_2:49439613-49439632 | Msa0919020:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr6_2:49439621-49439640 | None:intergenic | 40.0% |
| ! | GTAGTGGAGAATGTTCTATG+TGG | - | chr6_2:49440295-49440314 | None:intergenic | 40.0% |
| AGCAATGACTTTATGAGGAG+AGG | + | chr6_2:49440566-49440585 | Msa0919020:intron | 40.0% | |
| GCAATGACTTTATGAGGAGA+GGG | + | chr6_2:49440567-49440586 | Msa0919020:intron | 40.0% | |
| CTTCTTTGCAACAGATTCGA+TGG | + | chr6_2:49440754-49440773 | Msa0919020:intron | 40.0% | |
| GTCCAACAATGAGAAGAACA+CGG | + | chr6_2:49440777-49440796 | Msa0919020:CDS | 40.0% | |
| GCCGTTCAATTCAAATGATC+AGG | + | chr6_2:49440814-49440833 | Msa0919020:CDS | 40.0% | |
| ! | ATCAGGTAAGCTTTGTGTGT+TGG | + | chr6_2:49440831-49440850 | Msa0919020:intron | 40.0% |
| !!! | CTTTTTTTTTTGCGGTGGTC+GGG | - | chr6_2:49441106-49441125 | None:intergenic | 40.0% |
| !! | AACACATGCCTTGGTTTTCT+AGG | - | chr6_2:49441198-49441217 | None:intergenic | 40.0% |
| !! | GGTGCTTTTCTTTTTGGTGT+TGG | + | chr6_2:49441296-49441315 | Msa0919020:intron | 40.0% |
| GGGTGATTTATATGTGTAGG+TGG | + | chr6_2:49441374-49441393 | Msa0919020:intron | 40.0% | |
| !! | AACGGCGTGGTTTTACTTTC+TGG | - | chr6_2:49438624-49438643 | None:intergenic | 45.0% |
| GAAGAATTTGACGGCTGTGA+TGG | - | chr6_2:49438743-49438762 | None:intergenic | 45.0% | |
| GATCGAGCCGAAGAATTTGA+CGG | - | chr6_2:49438752-49438771 | None:intergenic | 45.0% | |
| ! | AGGGTTGATTCAGAGCTATC+GGG | - | chr6_2:49438783-49438802 | None:intergenic | 45.0% |
| !! | GTGTATGGTGTTTTCTGGTG+CGG | - | chr6_2:49438830-49438849 | None:intergenic | 45.0% |
| ATCTCCTCCGACTTAACTAG+AGG | + | chr6_2:49438986-49439005 | Msa0919020:intron | 45.0% | |
| CAAACCTCTAGTTAAGTCGG+AGG | - | chr6_2:49438993-49439012 | None:intergenic | 45.0% | |
| !!! | ACAAACCACTTTTGGGGTAG+TGG | - | chr6_2:49439095-49439114 | None:intergenic | 45.0% |
| GAAAGGATTATTACTGGCGG+TGG | + | chr6_2:49439249-49439268 | Msa0919020:intron | 45.0% | |
| GAAGAGCCCAAAAAATACGG+TGG | - | chr6_2:49440738-49440757 | None:intergenic | 45.0% | |
| CTCCGTGTTCTTCTCATTGT+TGG | - | chr6_2:49440782-49440801 | None:intergenic | 45.0% | |
| CAACAATGAGAAGAACACGG+AGG | + | chr6_2:49440780-49440799 | Msa0919020:CDS | 45.0% | |
| ! | AAAGGTGTAGCGCCCTATAA+TGG | + | chr6_2:49441420-49441439 | Msa0919020:CDS | 45.0% |
| !! | TATATATATATATATATATG+GGG | + | chr6_2:49439345-49439364 | Msa0919020:intron | 5.0% |
| !! | TTAATAATAATTTGATATAA+TGG | + | chr6_2:49440089-49440108 | Msa0919020:intron | 5.0% |
| !!! | TTAAATTACTTATTTATTTT+AGG | + | chr6_2:49440168-49440187 | Msa0919020:intron | 5.0% |
| !!! | TAAATTACTTATTTATTTTA+GGG | + | chr6_2:49440169-49440188 | Msa0919020:intron | 5.0% |
| !!! | CACTTTTGGGGTAGTGGTTG+GGG | - | chr6_2:49439089-49439108 | None:intergenic | 50.0% |
| !!! | CCACTTTTGGGGTAGTGGTT+GGG | - | chr6_2:49439090-49439109 | None:intergenic | 50.0% |
| !!! | ACCACTTTTGGGGTAGTGGT+TGG | - | chr6_2:49439091-49439110 | None:intergenic | 50.0% |
| GGATTATTACTGGCGGTGGT+TGG | + | chr6_2:49439253-49439272 | Msa0919020:intron | 50.0% | |
| TTCGTCTGTCCAAAACGGCG+TGG | - | chr6_2:49438637-49438656 | None:intergenic | 55.0% | |
| !! | GTTTTCTGGTGCGGCTTCCA+TGG | - | chr6_2:49438821-49438840 | None:intergenic | 55.0% |
| AGTGGTTGGGGTTTGAACCC+CGG | - | chr6_2:49439077-49439096 | None:intergenic | 55.0% | |
| CCCAACCACTACCCCAAAAG+TGG | + | chr6_2:49439087-49439106 | Msa0919020:intron | 55.0% | |
| CTGGTGCGGCTTCCATGGTG+AGG | - | chr6_2:49438816-49438835 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 49438597 | 49441470 | 49438597 | ID=Msa0919020;Name=Msa0919020 |
| chr6_2 | mRNA | 49438597 | 49441470 | 49438597 | ID=Msa0919020-mRNA-1;Parent=Msa0919020;Name=Msa0919020-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|134 |
| chr6_2 | exon | 49438597 | 49438855 | 49438597 | ID=Msa0919020-mRNA-1:exon:7481;Parent=Msa0919020-mRNA-1 |
| chr6_2 | exon | 49440768 | 49440835 | 49440768 | ID=Msa0919020-mRNA-1:exon:7482;Parent=Msa0919020-mRNA-1 |
| chr6_2 | exon | 49441393 | 49441470 | 49441393 | ID=Msa0919020-mRNA-1:exon:7483;Parent=Msa0919020-mRNA-1 |
| chr6_2 | CDS | 49438597 | 49438855 | 49438597 | ID=Msa0919020-mRNA-1:cds;Parent=Msa0919020-mRNA-1 |
| chr6_2 | CDS | 49440768 | 49440835 | 49440768 | ID=Msa0919020-mRNA-1:cds;Parent=Msa0919020-mRNA-1 |
| chr6_2 | CDS | 49441393 | 49441470 | 49441393 | ID=Msa0919020-mRNA-1:cds;Parent=Msa0919020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
