Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891510 | XP_013443308.1 | 96.269 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 9.34e-91 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891510 | A0A072TKA3 | 96.269 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 4.46e-91 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023000 | Msa0891510 | 0.807896 | 4.039587e-50 | -8.615850e-47 |
| Msa0784860 | Msa0891510 | 0.842096 | 3.185768e-58 | -8.615850e-47 |
| Msa0817730 | Msa0891510 | 0.800570 | 1.354517e-48 | -8.615850e-47 |
| Msa0870150 | Msa0891510 | 0.812621 | 3.866707e-51 | -8.615850e-47 |
| Msa0891510 | Msa0919020 | 0.851303 | 9.687922e-61 | -8.615850e-47 |
| Msa0891510 | Msa0956410 | 0.846793 | 1.737351e-59 | -8.615850e-47 |
| Msa0891510 | Msa1262920 | 0.800408 | 1.461332e-48 | -8.615850e-47 |
| Msa0891510 | Msa1302100 | 0.806178 | 9.329992e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891510 | MtrunA17_Chr6g0472331 | 96.269 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 8.59e-95 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGTGTTCTTCTCATTGT+TGG | 0.219593 | 6_1:-66879472 | None:intergenic |
| TTTGTCAAAGTCGCCATTAT+AGG | 0.294994 | 6_1:-66880127 | None:intergenic |
| CACAGCTATGGATTCTTCTA+TGG | 0.298350 | 6_1:+66877608 | None:intergenic |
| AAGAACGACAACCTTTGTTT+TGG | 0.298817 | 6_1:-66877728 | None:intergenic |
| TTGTCAAAGTCGCCATTATA+GGG | 0.344757 | 6_1:-66880126 | None:intergenic |
| AAAGTAAAACCACGTGGTTT+TGG | 0.352984 | 6_1:+66877643 | Msa0891510:CDS |
| CGTAAACTACCTCAATACTA+TGG | 0.373289 | 6_1:+66877680 | Msa0891510:CDS |
| CATGGTGAGGTTTCAAATCA+AGG | 0.391023 | 6_1:-66877818 | None:intergenic |
| GCCGTTCAATTCAAATGATC+AGG | 0.427383 | 6_1:+66879507 | Msa0891510:CDS |
| CTTCTTTGCAACAGATTCGA+TGG | 0.428766 | 6_1:+66879447 | Msa0891510:intron |
| AAAGGTGTAGCGCCCTATAA+TGG | 0.435667 | 6_1:+66880114 | Msa0891510:CDS |
| ATCTTATACCTGAAGGTGTA+TGG | 0.459090 | 6_1:-66877860 | None:intergenic |
| AGAAAACACCATACACCTTC+AGG | 0.480517 | 6_1:+66877852 | Msa0891510:CDS |
| AAGGGTTGATTCAGAGCTAT+CGG | 0.489516 | 6_1:-66877799 | None:intergenic |
| TTCTTTGCAACAGATTCGAT+GGG | 0.490944 | 6_1:+66879448 | Msa0891510:intron |
| AAGAATTTGACGGCTGTGAT+GGG | 0.496731 | 6_1:-66877757 | None:intergenic |
| GAAGAATTTGACGGCTGTGA+TGG | 0.499319 | 6_1:-66877758 | None:intergenic |
| TATAATGGCGACTTTGACAA+AGG | 0.504926 | 6_1:+66880129 | Msa0891510:CDS |
| ACCTGATCATTTGAATTGAA+CGG | 0.508297 | 6_1:-66879508 | None:intergenic |
| GATCGAGTCGAAGAATTTGA+CGG | 0.532184 | 6_1:-66877767 | None:intergenic |
| ATGGTGAGGTTTCAAATCAA+GGG | 0.541262 | 6_1:-66877817 | None:intergenic |
| AGGGTTGATTCAGAGCTATC+GGG | 0.541321 | 6_1:-66877798 | None:intergenic |
| CGTACAATGTTCCAAAACAA+AGG | 0.556727 | 6_1:+66877717 | Msa0891510:CDS |
| CTGGTGCGGCTTCCATGGTG+AGG | 0.559379 | 6_1:-66877831 | None:intergenic |
| AAGAAGCTTCCATAGTATTG+AGG | 0.585611 | 6_1:-66877689 | None:intergenic |
| CAAGTAGAAAATGAAAGCAA+AGG | 0.600178 | 6_1:+66880096 | Msa0891510:CDS |
| CTTGATTTGAAACCTCACCA+TGG | 0.689590 | 6_1:+66877819 | Msa0891510:CDS |
| TTCGTCTGTCCAAAACCACG+TGG | 0.702042 | 6_1:-66877652 | None:intergenic |
| GTCCAACAATGAGAAGAACA+CGG | 0.724140 | 6_1:+66879470 | Msa0891510:CDS |
| TACCAGAAAGTAAAACCACG+TGG | 0.773547 | 6_1:+66877637 | Msa0891510:CDS |
| CAACAATGAGAAGAACACGG+AGG | 0.824433 | 6_1:+66879473 | Msa0891510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTATATTTTTTTAG+AGG | + | chr6_1:66878457-66878476 | Msa0891510:intron | 10.0% |
| !!! | GATATTTATATTTTTTTAGA+GGG | + | chr6_1:66878458-66878477 | Msa0891510:intron | 10.0% |
| !!! | TCGTATATAATTATATTTTT+TGG | + | chr6_1:66878739-66878758 | Msa0891510:intron | 10.0% |
| !!! | TTTTTTTTTAAATAATGTAG+TGG | - | chr6_1:66879039-66879058 | None:intergenic | 10.0% |
| !! | ATATAATAGACATTAAAAAA+AGG | - | chr6_1:66879330-66879349 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATGTCTATTATA+TGG | + | chr6_1:66879329-66879348 | Msa0891510:intron | 10.0% |
| !!! | TTTTTTAATGTCTATTATAT+GGG | + | chr6_1:66879330-66879349 | Msa0891510:intron | 10.0% |
| !!! | AATCTAAAATTAGATATTTT+TGG | + | chr6_1:66879969-66879988 | Msa0891510:intron | 10.0% |
| !!! | TTATCGATGTTTTTTTTTTA+AGG | - | chr6_1:66877986-66878005 | None:intergenic | 15.0% |
| !! | ATTTCGTTATTAAAGTTTAT+TGG | + | chr6_1:66878554-66878573 | Msa0891510:intron | 15.0% |
| !! | TTTCGTTATTAAAGTTTATT+GGG | + | chr6_1:66878555-66878574 | Msa0891510:intron | 15.0% |
| !! | TAATAAATTCATACTCTATT+AGG | + | chr6_1:66878866-66878885 | Msa0891510:intron | 15.0% |
| !!! | TTTTTAATGTCTATTATATG+GGG | + | chr6_1:66879331-66879350 | Msa0891510:intron | 15.0% |
| !!! | TCTATAGTCTTTTTTTTTTA+CGG | - | chr6_1:66879808-66879827 | None:intergenic | 15.0% |
| !!! | TGGTTTGTGTATAAAATATA+AGG | + | chr6_1:66878130-66878149 | Msa0891510:intron | 20.0% |
| !! | AGGTTAAAAAAAATTAGATG+AGG | + | chr6_1:66878150-66878169 | Msa0891510:intron | 20.0% |
| !! | TATAATGGTAAACATGAAAA+AGG | + | chr6_1:66878832-66878851 | Msa0891510:intron | 20.0% |
| !! | TTAGCAGTTATGTTAATTTA+TGG | + | chr6_1:66878934-66878953 | Msa0891510:intron | 20.0% |
| !! | TAGCAGTTATGTTAATTTAT+GGG | + | chr6_1:66878935-66878954 | Msa0891510:intron | 20.0% |
| !! | TATTATCACATCTACTAATA+AGG | + | chr6_1:66879120-66879139 | Msa0891510:intron | 20.0% |
| !! | GTAGTATAGTATAAGATTAT+AGG | + | chr6_1:66879203-66879222 | Msa0891510:intron | 20.0% |
| !! | AATGAAGAAAAATTCAAGTA+AGG | + | chr6_1:66879236-66879255 | Msa0891510:intron | 20.0% |
| !!! | TTTTAATGTCTATTATATGG+GGG | + | chr6_1:66879332-66879351 | Msa0891510:intron | 20.0% |
| !! | AACATTTATTGTCTTTAGTT+AGG | + | chr6_1:66879364-66879383 | Msa0891510:intron | 20.0% |
| !! | ACATTTATTGTCTTTAGTTA+GGG | + | chr6_1:66879365-66879384 | Msa0891510:intron | 20.0% |
| !! | AAAAAACTATACAATTGAGT+TGG | - | chr6_1:66879591-66879610 | None:intergenic | 20.0% |
| !! | TAATGAAAAGTGAATTCATT+TGG | + | chr6_1:66879613-66879632 | Msa0891510:intron | 20.0% |
| !! | GAAGAATAAATAGGAAATTT+AGG | - | chr6_1:66879697-66879716 | None:intergenic | 20.0% |
| !! | CACATTTAAGAAGAATAAAT+AGG | - | chr6_1:66879706-66879725 | None:intergenic | 20.0% |
| !! | TTTAAGTATATTAGTTCAGT+TGG | + | chr6_1:66879733-66879752 | Msa0891510:intron | 20.0% |
| !! | GACAATACATAATATATGTA+AGG | + | chr6_1:66879760-66879779 | Msa0891510:intron | 20.0% |
| !! | TACATAATATATGTAAGGTT+CGG | + | chr6_1:66879765-66879784 | Msa0891510:intron | 20.0% |
| ! | AAAAACAATCTTATACCTGA+AGG | - | chr6_1:66877870-66877889 | None:intergenic | 25.0% |
| !!! | TTTATACACAAACCACTTTT+GGG | - | chr6_1:66878125-66878144 | None:intergenic | 25.0% |
| !! | TTTTATACACAAACCACTTT+TGG | - | chr6_1:66878126-66878145 | None:intergenic | 25.0% |
| ! | GATGTTGTTAAGGTATAATT+AGG | + | chr6_1:66878172-66878191 | Msa0891510:intron | 25.0% |
| ! | TAACCTAATTGCTCAAAATT+AGG | + | chr6_1:66878214-66878233 | Msa0891510:intron | 25.0% |
| !! | TAACCTAATTTTGAGCAATT+AGG | - | chr6_1:66878220-66878239 | None:intergenic | 25.0% |
| ! | AAATTCAACATGAACATGAA+GGG | + | chr6_1:66878520-66878539 | Msa0891510:intron | 25.0% |
| ! | TTACGAAGATATTATGTTAG+TGG | - | chr6_1:66878674-66878693 | None:intergenic | 25.0% |
| ! | TGTAATGAGTTAAAAACACT+TGG | - | chr6_1:66879156-66879175 | None:intergenic | 25.0% |
| ! | ACATAATATATGTAAGGTTC+GGG | + | chr6_1:66879766-66879785 | Msa0891510:intron | 25.0% |
| !!! | ATAGTCTTTTTTTTTTACGG+TGG | - | chr6_1:66879805-66879824 | None:intergenic | 25.0% |
| ! | GTTCAATGTTTATAGTTTGA+TGG | - | chr6_1:66879938-66879957 | None:intergenic | 25.0% |
| !!! | ATTTTTGGTGCTTTTCTTTT+TGG | + | chr6_1:66879984-66880003 | Msa0891510:intron | 25.0% |
| !!! | TTTTGGTGATAGGATATTTT+TGG | + | chr6_1:66880001-66880020 | Msa0891510:intron | 25.0% |
| GACAATGCATTATATATGCA+AGG | + | chr6_1:66878073-66878092 | Msa0891510:intron | 30.0% | |
| !! | TTATACACAAACCACTTTTG+GGG | - | chr6_1:66878124-66878143 | None:intergenic | 30.0% |
| ATTAGATGAGGATGTTGTTA+AGG | + | chr6_1:66878162-66878181 | Msa0891510:intron | 30.0% | |
| GAAATTCAACATGAACATGA+AGG | + | chr6_1:66878519-66878538 | Msa0891510:intron | 30.0% | |
| ACATCGAAAGATGTTTAAGA+AGG | - | chr6_1:66878976-66878995 | None:intergenic | 30.0% | |
| AATGTTCTATGTGGATAGTT+CGG | - | chr6_1:66879014-66879033 | None:intergenic | 30.0% | |
| TAAGGAAGCAATGATTTATG+AGG | + | chr6_1:66879254-66879273 | Msa0891510:intron | 30.0% | |
| CTCGAAAAATAAAGCATAGT+TGG | - | chr6_1:66879391-66879410 | None:intergenic | 30.0% | |
| !!! | CTATGCTTTATTTTTCGAGA+TGG | + | chr6_1:66879392-66879411 | Msa0891510:intron | 30.0% |
| !!! | TTATTGACCACCGTATTTTT+TGG | + | chr6_1:66879421-66879440 | Msa0891510:intron | 30.0% |
| !!! | TATTGACCACCGTATTTTTT+GGG | + | chr6_1:66879422-66879441 | Msa0891510:intron | 30.0% |
| AAAGAAGAGCCCAAAAAATA+CGG | - | chr6_1:66879434-66879453 | None:intergenic | 30.0% | |
| ACCTGATCATTTGAATTGAA+CGG | - | chr6_1:66879511-66879530 | None:intergenic | 30.0% | |
| TTATCACAAGACAAGAAGAA+AGG | - | chr6_1:66879561-66879580 | None:intergenic | 30.0% | |
| ! | GTATATTAGTTCAGTTGGTA+AGG | + | chr6_1:66879738-66879757 | Msa0891510:intron | 30.0% |
| CATAATATATGTAAGGTTCG+GGG | + | chr6_1:66879767-66879786 | Msa0891510:intron | 30.0% | |
| !!! | CTTTTTTTTTTACGGTGGTT+GGG | - | chr6_1:66879800-66879819 | None:intergenic | 30.0% |
| !!! | TCTTTTTTTTTTACGGTGGT+TGG | - | chr6_1:66879801-66879820 | None:intergenic | 30.0% |
| AAAAATGTAAACACATGCCT+TGG | - | chr6_1:66879901-66879920 | None:intergenic | 30.0% | |
| ! | AAGGCATGTGTTTACATTTT+TGG | + | chr6_1:66879900-66879919 | Msa0891510:intron | 30.0% |
| !!! | GATATTTTTGGTGTTTGTAG+AGG | + | chr6_1:66880013-66880032 | Msa0891510:intron | 30.0% |
| TGTAGAGGAGATAAATATAC+TGG | + | chr6_1:66880028-66880047 | Msa0891510:intron | 30.0% | |
| TGGTCATAAAAGTGACTAAT+GGG | + | chr6_1:66880048-66880067 | Msa0891510:intron | 30.0% | |
| AATGGGTGATTTATATGTGT+AGG | + | chr6_1:66880065-66880084 | Msa0891510:intron | 30.0% | |
| ! | TGCTTTCATTTTCTACTTGT+GGG | - | chr6_1:66880095-66880114 | None:intergenic | 30.0% |
| ! | TTGCTTTCATTTTCTACTTG+TGG | - | chr6_1:66880096-66880115 | None:intergenic | 30.0% |
| CAAGTAGAAAATGAAAGCAA+AGG | + | chr6_1:66880096-66880115 | Msa0891510:CDS | 30.0% | |
| ! | AAAGTAAAACCACGTGGTTT+TGG | + | chr6_1:66877643-66877662 | Msa0891510:CDS | 35.0% |
| CGTAAACTACCTCAATACTA+TGG | + | chr6_1:66877680-66877699 | Msa0891510:CDS | 35.0% | |
| AAGAAGCTTCCATAGTATTG+AGG | - | chr6_1:66877692-66877711 | None:intergenic | 35.0% | |
| CGTACAATGTTCCAAAACAA+AGG | + | chr6_1:66877717-66877736 | Msa0891510:CDS | 35.0% | |
| !! | AAGAACGACAACCTTTGTTT+TGG | - | chr6_1:66877731-66877750 | None:intergenic | 35.0% |
| ATGGTGAGGTTTCAAATCAA+GGG | - | chr6_1:66877820-66877839 | None:intergenic | 35.0% | |
| ! | ATCTTATACCTGAAGGTGTA+TGG | - | chr6_1:66877863-66877882 | None:intergenic | 35.0% |
| ACACAAACCTCTAGTTAAGT+CGG | - | chr6_1:66878019-66878038 | None:intergenic | 35.0% | |
| TGCATTATATATGCAAGGTC+CGG | + | chr6_1:66878078-66878097 | Msa0891510:intron | 35.0% | |
| !! | TTGTTATGCAAAGCGTTGAA+AGG | + | chr6_1:66878255-66878274 | Msa0891510:intron | 35.0% |
| ! | AGCGTTGAAAGGATTATTAC+TGG | + | chr6_1:66878266-66878285 | Msa0891510:intron | 35.0% |
| GTTGAAAGGATTATTACTGG+CGG | + | chr6_1:66878269-66878288 | Msa0891510:intron | 35.0% | |
| !! | ATTTACGTGCTGTTTGGTTT+AGG | - | chr6_1:66878309-66878328 | None:intergenic | 35.0% |
| ! | CATTCTATTTACGTGCTGTT+TGG | - | chr6_1:66878315-66878334 | None:intergenic | 35.0% |
| ! | GTAGTGGAAAATGTTCTATG+TGG | - | chr6_1:66879023-66879042 | None:intergenic | 35.0% |
| AAGCAATGATTTATGAGGAG+AGG | + | chr6_1:66879259-66879278 | Msa0891510:intron | 35.0% | |
| AGCAATGATTTATGAGGAGA+GGG | + | chr6_1:66879260-66879279 | Msa0891510:intron | 35.0% | |
| TTCTTTGCAACAGATTCGAT+GGG | + | chr6_1:66879448-66879467 | Msa0891510:intron | 35.0% | |
| TTAGACTACCTAGAAAACCA+AGG | + | chr6_1:66879881-66879900 | Msa0891510:intron | 35.0% | |
| !!! | ATGTGTTTACATTTTTGGCG+TGG | + | chr6_1:66879905-66879924 | Msa0891510:intron | 35.0% |
| !! | GTGCTTTTCTTTTTGGTGAT+AGG | + | chr6_1:66879991-66880010 | Msa0891510:intron | 35.0% |
| CTGGTCATAAAAGTGACTAA+TGG | + | chr6_1:66880047-66880066 | Msa0891510:intron | 35.0% | |
| TTGTCAAAGTCGCCATTATA+GGG | - | chr6_1:66880129-66880148 | None:intergenic | 35.0% | |
| TTTGTCAAAGTCGCCATTAT+AGG | - | chr6_1:66880130-66880149 | None:intergenic | 35.0% | |
| TATAATGGCGACTTTGACAA+AGG | + | chr6_1:66880129-66880148 | Msa0891510:CDS | 35.0% | |
| TACCAGAAAGTAAAACCACG+TGG | + | chr6_1:66877637-66877656 | Msa0891510:CDS | 40.0% | |
| !! | AACCACGTGGTTTTACTTTC+TGG | - | chr6_1:66877642-66877661 | None:intergenic | 40.0% |
| AAGAATTTGACGGCTGTGAT+GGG | - | chr6_1:66877760-66877779 | None:intergenic | 40.0% | |
| GATCGAGTCGAAGAATTTGA+CGG | - | chr6_1:66877770-66877789 | None:intergenic | 40.0% | |
| ! | AAGGGTTGATTCAGAGCTAT+CGG | - | chr6_1:66877802-66877821 | None:intergenic | 40.0% |
| CATGGTGAGGTTTCAAATCA+AGG | - | chr6_1:66877821-66877840 | None:intergenic | 40.0% | |
| ! | CTTGATTTGAAACCTCACCA+TGG | + | chr6_1:66877819-66877838 | Msa0891510:CDS | 40.0% |
| !! | TGAAGGTGTATGGTGTTTTC+TGG | - | chr6_1:66877853-66877872 | None:intergenic | 40.0% |
| AGAAAACACCATACACCTTC+AGG | + | chr6_1:66877852-66877871 | Msa0891510:CDS | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | + | chr6_1:66878079-66878098 | Msa0891510:intron | 40.0% | |
| CATTATATATGCAAGGTCCG+GGG | + | chr6_1:66878080-66878099 | Msa0891510:intron | 40.0% | |
| GCAATGATTTATGAGGAGAG+GGG | + | chr6_1:66879261-66879280 | Msa0891510:intron | 40.0% | |
| CAATGATTTATGAGGAGAGG+GGG | + | chr6_1:66879262-66879281 | Msa0891510:intron | 40.0% | |
| CTTCTTTGCAACAGATTCGA+TGG | + | chr6_1:66879447-66879466 | Msa0891510:intron | 40.0% | |
| GTCCAACAATGAGAAGAACA+CGG | + | chr6_1:66879470-66879489 | Msa0891510:CDS | 40.0% | |
| GCCGTTCAATTCAAATGATC+AGG | + | chr6_1:66879507-66879526 | Msa0891510:CDS | 40.0% | |
| ! | ATCAGGTAAGCTTTGTGTGT+TGG | + | chr6_1:66879524-66879543 | Msa0891510:intron | 40.0% |
| !! | AACACATGCCTTGGTTTTCT+AGG | - | chr6_1:66879892-66879911 | None:intergenic | 40.0% |
| GGGTGATTTATATGTGTAGG+TGG | + | chr6_1:66880068-66880087 | Msa0891510:intron | 40.0% | |
| GAAGAATTTGACGGCTGTGA+TGG | - | chr6_1:66877761-66877780 | None:intergenic | 45.0% | |
| ! | AGGGTTGATTCAGAGCTATC+GGG | - | chr6_1:66877801-66877820 | None:intergenic | 45.0% |
| !! | GTGTATGGTGTTTTCTGGTG+CGG | - | chr6_1:66877848-66877867 | None:intergenic | 45.0% |
| ATCTCCTCCGACTTAACTAG+AGG | + | chr6_1:66878009-66878028 | Msa0891510:intron | 45.0% | |
| CAAACCTCTAGTTAAGTCGG+AGG | - | chr6_1:66878016-66878035 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAACTGGTA+AGG | + | chr6_1:66878051-66878070 | Msa0891510:intron | 45.0% | |
| !!! | ACAAACCACTTTTGGGGTAG+TGG | - | chr6_1:66878118-66878137 | None:intergenic | 45.0% |
| GAAAGGATTATTACTGGCGG+TGG | + | chr6_1:66878272-66878291 | Msa0891510:intron | 45.0% | |
| ! | TGTGGATAGTTCGGTTGATG+AGG | - | chr6_1:66879005-66879024 | None:intergenic | 45.0% |
| GAAGAGCCCAAAAAATACGG+TGG | - | chr6_1:66879431-66879450 | None:intergenic | 45.0% | |
| CTCCGTGTTCTTCTCATTGT+TGG | - | chr6_1:66879475-66879494 | None:intergenic | 45.0% | |
| CAACAATGAGAAGAACACGG+AGG | + | chr6_1:66879473-66879492 | Msa0891510:CDS | 45.0% | |
| ! | AAAGGTGTAGCGCCCTATAA+TGG | + | chr6_1:66880114-66880133 | Msa0891510:CDS | 45.0% |
| !! | TTAATAATAATTTGATATAA+TGG | + | chr6_1:66878817-66878836 | Msa0891510:intron | 5.0% |
| !!! | TTAAATTACTTATTTATTTT+AGG | + | chr6_1:66878896-66878915 | Msa0891510:intron | 5.0% |
| !!! | TAAATTACTTATTTATTTTA+GGG | + | chr6_1:66878897-66878916 | Msa0891510:intron | 5.0% |
| TTCGTCTGTCCAAAACCACG+TGG | - | chr6_1:66877655-66877674 | None:intergenic | 50.0% | |
| TCTCGTGAGCTTAGCTCAAC+TGG | + | chr6_1:66878046-66878065 | Msa0891510:intron | 50.0% | |
| GGATTATTACTGGCGGTGGT+TGG | + | chr6_1:66878276-66878295 | Msa0891510:intron | 50.0% | |
| !! | GTTTTCTGGTGCGGCTTCCA+TGG | - | chr6_1:66877839-66877858 | None:intergenic | 55.0% |
| !!! | CACTTTTGGGGTAGTGGCTG+GGG | - | chr6_1:66878112-66878131 | None:intergenic | 55.0% |
| !!! | CCACTTTTGGGGTAGTGGCT+GGG | - | chr6_1:66878113-66878132 | None:intergenic | 55.0% |
| !!! | ACCACTTTTGGGGTAGTGGC+TGG | - | chr6_1:66878114-66878133 | None:intergenic | 55.0% |
| AGTGGCTGGGGTTTGAACCC+CGG | - | chr6_1:66878100-66878119 | None:intergenic | 60.0% | |
| CCCAGCCACTACCCCAAAAG+TGG | + | chr6_1:66878110-66878129 | Msa0891510:intron | 60.0% | |
| CTGGTGCGGCTTCCATGGTG+AGG | - | chr6_1:66877834-66877853 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 66877615 | 66880164 | 66877615 | ID=Msa0891510;Name=Msa0891510 |
| chr6_1 | mRNA | 66877615 | 66880164 | 66877615 | ID=Msa0891510-mRNA-1;Parent=Msa0891510;Name=Msa0891510-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|134 |
| chr6_1 | exon | 66877615 | 66877873 | 66877615 | ID=Msa0891510-mRNA-1:exon:11929;Parent=Msa0891510-mRNA-1 |
| chr6_1 | exon | 66879461 | 66879528 | 66879461 | ID=Msa0891510-mRNA-1:exon:11930;Parent=Msa0891510-mRNA-1 |
| chr6_1 | exon | 66880087 | 66880164 | 66880087 | ID=Msa0891510-mRNA-1:exon:11931;Parent=Msa0891510-mRNA-1 |
| chr6_1 | CDS | 66877615 | 66877873 | 66877615 | ID=Msa0891510-mRNA-1:cds;Parent=Msa0891510-mRNA-1 |
| chr6_1 | CDS | 66879461 | 66879528 | 66879461 | ID=Msa0891510-mRNA-1:cds;Parent=Msa0891510-mRNA-1 |
| chr6_1 | CDS | 66880087 | 66880164 | 66880087 | ID=Msa0891510-mRNA-1:cds;Parent=Msa0891510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
