Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817730 | XP_003616591.1 | 95.047 | 424 | 13 | 1 | 1 | 424 | 1 | 416 | 0.0 | 817 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817730 | G7KGW7 | 95.047 | 424 | 13 | 1 | 1 | 424 | 1 | 416 | 0.0 | 817 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa0817730 | 0.818123 | 2.309392e-52 | -8.615850e-47 |
| Msa0015930 | Msa0817730 | 0.836246 | 1.047376e-56 | -8.615850e-47 |
| Msa0023000 | Msa0817730 | 0.839115 | 1.921648e-57 | -8.615850e-47 |
| Msa0023010 | Msa0817730 | 0.807740 | 4.359933e-50 | -8.615850e-47 |
| Msa0023040 | Msa0817730 | 0.810021 | 1.417516e-50 | -8.615850e-47 |
| Msa0026680 | Msa0817730 | 0.858374 | 8.608924e-63 | -8.615850e-47 |
| Msa0032580 | Msa0817730 | 0.815763 | 7.826023e-52 | -8.615850e-47 |
| Msa0058300 | Msa0817730 | 0.812542 | 4.022595e-51 | -8.615850e-47 |
| Msa0097780 | Msa0817730 | 0.800251 | 1.573050e-48 | -8.615850e-47 |
| Msa0118780 | Msa0817730 | 0.824734 | 6.874333e-54 | -8.615850e-47 |
| Msa0118810 | Msa0817730 | 0.806839 | 6.768376e-50 | -8.615850e-47 |
| Msa0605650 | Msa0817730 | 0.840458 | 8.591491e-58 | -8.615850e-47 |
| Msa0632870 | Msa0817730 | 0.801059 | 1.076436e-48 | -8.615850e-47 |
| Msa0669720 | Msa0817730 | 0.800798 | 1.217069e-48 | -8.615850e-47 |
| Msa0671740 | Msa0817730 | 0.803552 | 3.301846e-49 | -8.615850e-47 |
| Msa0686220 | Msa0817730 | 0.806491 | 8.018611e-50 | -8.615850e-47 |
| Msa0708930 | Msa0817730 | 0.851392 | 9.144029e-61 | -8.615850e-47 |
| Msa0717230 | Msa0817730 | -0.822214 | 2.670504e-53 | -8.615850e-47 |
| Msa0738380 | Msa0817730 | 0.912947 | 1.085284e-83 | -8.615850e-47 |
| Msa0764680 | Msa0817730 | -0.803852 | 2.860877e-49 | -8.615850e-47 |
| Msa0784860 | Msa0817730 | 0.901998 | 1.518850e-78 | -8.615850e-47 |
| Msa0799680 | Msa0817730 | -0.813452 | 2.541523e-51 | -8.615850e-47 |
| Msa0817730 | Msa0818750 | 0.828894 | 6.973907e-55 | -8.615850e-47 |
| Msa0817730 | Msa0858180 | 0.996637 | 3.752732e-230 | -8.615850e-47 |
| Msa0817730 | Msa0867730 | 0.821344 | 4.244277e-53 | -8.615850e-47 |
| Msa0817730 | Msa0891510 | 0.800570 | 1.354517e-48 | -8.615850e-47 |
| Msa0817730 | Msa0919020 | 0.806939 | 6.445992e-50 | -8.615850e-47 |
| Msa0817730 | Msa0956410 | 0.839297 | 1.723584e-57 | -8.615850e-47 |
| Msa0817730 | Msa0968610 | 0.810545 | 1.092898e-50 | -8.615850e-47 |
| Msa0817730 | Msa1030620 | 0.833157 | 6.266938e-56 | -8.615850e-47 |
| Msa0817730 | Msa1037420 | 0.835909 | 1.275478e-56 | -8.615850e-47 |
| Msa0817730 | Msa1115080 | 0.815280 | 1.002198e-51 | -8.615850e-47 |
| Msa0817730 | Msa1123810 | 0.841066 | 5.953244e-58 | -8.615850e-47 |
| Msa0817730 | Msa1170880 | 0.801520 | 8.662445e-49 | -8.615850e-47 |
| Msa0817730 | Msa1212190 | 0.813811 | 2.118778e-51 | -8.615850e-47 |
| Msa0817730 | Msa1212270 | 0.809578 | 1.765726e-50 | -8.615850e-47 |
| Msa0817730 | Msa1231840 | 0.801326 | 9.494491e-49 | -8.615850e-47 |
| Msa0817730 | Msa1259910 | 0.811124 | 8.189450e-51 | -8.615850e-47 |
| Msa0817730 | Msa1353750 | 0.847322 | 1.244615e-59 | -8.615850e-47 |
| Msa0817730 | Msa1385770 | 0.822946 | 1.804326e-53 | -8.615850e-47 |
| Msa0817730 | Msa1409240 | 0.820954 | 5.220459e-53 | -8.615850e-47 |
| Msa0817730 | Msa1434140 | 0.817733 | 2.829337e-52 | -8.615850e-47 |
| Msa0817730 | Msa1465960 | 0.802657 | 5.056454e-49 | -8.615850e-47 |
| Msa0145080 | Msa0817730 | 0.855229 | 7.256817e-62 | -8.615850e-47 |
| Msa0145160 | Msa0817730 | 0.826426 | 2.730374e-54 | -8.615850e-47 |
| Msa0145730 | Msa0817730 | 0.815968 | 7.043349e-52 | -8.615850e-47 |
| Msa0156370 | Msa0817730 | 0.826285 | 2.949773e-54 | -8.615850e-47 |
| Msa0162100 | Msa0817730 | 0.816446 | 5.507692e-52 | -8.615850e-47 |
| Msa0162120 | Msa0817730 | 0.804940 | 1.697357e-49 | -8.615850e-47 |
| Msa0162130 | Msa0817730 | 0.850382 | 1.760349e-60 | -8.615850e-47 |
| Msa0172970 | Msa0817730 | 0.814307 | 1.646661e-51 | -8.615850e-47 |
| Msa0189520 | Msa0817730 | 0.810667 | 1.028331e-50 | -8.615850e-47 |
| Msa0381500 | Msa0817730 | 0.801862 | 7.369512e-49 | -8.615850e-47 |
| Msa0402210 | Msa0817730 | 0.842589 | 2.358055e-58 | -8.615850e-47 |
| Msa0256330 | Msa0817730 | 0.816509 | 5.330266e-52 | -8.615850e-47 |
| Msa0295330 | Msa0817730 | 0.818481 | 1.917068e-52 | -8.615850e-47 |
| Msa0345350 | Msa0817730 | 0.809416 | 1.913230e-50 | -8.615850e-47 |
| Msa0355140 | Msa0817730 | 0.842753 | 2.133460e-58 | -8.615850e-47 |
| Msa0483770 | Msa0817730 | 0.833625 | 4.790274e-56 | -8.615850e-47 |
| Msa0534900 | Msa0817730 | 0.841468 | 4.665592e-58 | -8.615850e-47 |
| Msa0550120 | Msa0817730 | 0.812559 | 3.989131e-51 | -8.615850e-47 |
| Msa0550150 | Msa0817730 | 0.801687 | 8.004904e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817730 | MtrunA17_Chr5g0436741 | 95.047 | 424 | 13 | 1 | 1 | 424 | 1 | 416 | 0.0 | 817 |
| Msa0817730 | MtrunA17_Chr3g0104511 | 40.464 | 388 | 162 | 6 | 85 | 418 | 136 | 508 | 3.45e-83 | 264 |
| Msa0817730 | MtrunA17_Chr2g0333081 | 40.187 | 107 | 64 | 0 | 304 | 410 | 137 | 243 | 6.25e-18 | 83.6 |
| Msa0817730 | MtrunA17_Chr7g0262061 | 31.073 | 177 | 116 | 2 | 231 | 404 | 151 | 324 | 1.18e-16 | 80.9 |
| Msa0817730 | MtrunA17_Chr7g0262541 | 35.849 | 106 | 66 | 1 | 309 | 414 | 240 | 343 | 1.95e-15 | 77.4 |
| Msa0817730 | MtrunA17_Chr4g0063891 | 38.679 | 106 | 65 | 0 | 297 | 402 | 153 | 258 | 1.06e-14 | 74.3 |
| Msa0817730 | MtrunA17_Chr1g0186111 | 36.458 | 96 | 61 | 0 | 309 | 404 | 276 | 371 | 1.04e-11 | 66.2 |
| Msa0817730 | MtrunA17_Chr5g0411051 | 33.684 | 95 | 63 | 0 | 308 | 402 | 124 | 218 | 4.98e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0817730 | AT3G47080.1 | 39.084 | 371 | 177 | 8 | 78 | 418 | 158 | 509 | 2.39e-77 | 249 |
| Msa0817730 | AT1G07280.3 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 1.98e-44 | 162 |
| Msa0817730 | AT1G07280.3 | 48.171 | 164 | 76 | 2 | 254 | 417 | 389 | 543 | 1.40e-41 | 155 |
| Msa0817730 | AT1G07280.1 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 1.98e-44 | 162 |
| Msa0817730 | AT1G07280.1 | 48.171 | 164 | 76 | 2 | 254 | 417 | 389 | 543 | 1.40e-41 | 155 |
| Msa0817730 | AT1G07280.2 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 1.98e-44 | 162 |
| Msa0817730 | AT1G07280.2 | 48.171 | 164 | 76 | 2 | 254 | 417 | 389 | 543 | 1.40e-41 | 155 |
| Msa0817730 | AT2G29670.1 | 47.879 | 165 | 83 | 1 | 254 | 418 | 368 | 529 | 1.16e-43 | 160 |
| Msa0817730 | AT2G29670.1 | 51.408 | 142 | 63 | 4 | 90 | 230 | 137 | 273 | 5.96e-36 | 139 |
| Msa0817730 | AT2G29670.2 | 47.879 | 165 | 83 | 1 | 254 | 418 | 368 | 529 | 1.16e-43 | 160 |
| Msa0817730 | AT2G29670.2 | 51.408 | 142 | 63 | 4 | 90 | 230 | 137 | 273 | 5.96e-36 | 139 |
| Msa0817730 | AT1G07280.4 | 31.746 | 315 | 200 | 5 | 90 | 402 | 160 | 461 | 3.01e-42 | 155 |
| Msa0817730 | AT1G07280.4 | 48.315 | 89 | 40 | 1 | 254 | 342 | 389 | 471 | 8.51e-17 | 82.8 |
| Msa0817730 | AT4G17940.1 | 37.255 | 102 | 64 | 0 | 301 | 402 | 145 | 246 | 2.44e-15 | 76.3 |
| Msa0817730 | AT5G20190.1 | 40.404 | 99 | 59 | 0 | 306 | 404 | 156 | 254 | 2.18e-14 | 73.9 |
| Msa0817730 | AT1G80130.1 | 38.384 | 99 | 61 | 0 | 304 | 402 | 163 | 261 | 1.30e-13 | 71.6 |
| Msa0817730 | AT4G32340.1 | 38.384 | 99 | 60 | 1 | 307 | 404 | 111 | 209 | 8.46e-12 | 65.5 |
Find 77 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATAAGAAAGGATAAT+TGG | 0.189834 | 5_3:-53111157 | Msa0817730:CDS |
| AGAATTGAGGGGTGAGGATT+TGG | 0.196047 | 5_3:-53112280 | Msa0817730:CDS |
| AACTCTTATGGTTGATGTTA+TGG | 0.249882 | 5_3:-53112496 | Msa0817730:CDS |
| TTAATCATCCTTATAGATAA+AGG | 0.257329 | 5_3:+53112753 | None:intergenic |
| CAGTGAAACACCAACTCTTA+TGG | 0.277824 | 5_3:-53112508 | Msa0817730:CDS |
| TCTCTCCCAAACTTGAATAT+TGG | 0.313359 | 5_3:-53113082 | Msa0817730:CDS |
| TTGGGATCCCTTTATCTATA+AGG | 0.320106 | 5_3:-53112761 | Msa0817730:CDS |
| AATCAGAAGGAAGAGAATAA+AGG | 0.320334 | 5_3:+53113048 | None:intergenic |
| TAGTTTCCAATATTCAAGTT+TGG | 0.321034 | 5_3:+53113076 | None:intergenic |
| GATAAATAGTAAGTGTTTCC+AGG | 0.335813 | 5_3:+53111095 | None:intergenic |
| CAAAGTATGCTAGTTTCCTT+TGG | 0.340397 | 5_3:-53111073 | Msa0817730:CDS |
| ATTTGTTTGGTTGTTTCAAC+AGG | 0.342400 | 5_3:-53112535 | Msa0817730:CDS |
| TGAAAATAAAAGAGAAATCT+TGG | 0.349066 | 5_3:-53112877 | Msa0817730:CDS |
| TCTGGCCAACTAGGTGGTTC+AGG | 0.352770 | 5_3:+53112831 | None:intergenic |
| AGTTTCCAATATTCAAGTTT+GGG | 0.355232 | 5_3:+53113077 | None:intergenic |
| CCTTCAATCTCCACAGAAAC+AGG | 0.376600 | 5_3:+53112228 | None:intergenic |
| AAGTTATCTAATTCTTCTAT+AGG | 0.388681 | 5_3:+53111014 | None:intergenic |
| AAAGTTGTGGAATTCTTTGT+TGG | 0.394009 | 5_3:-53112325 | Msa0817730:CDS |
| TAATCATCCTTATAGATAAA+GGG | 0.401185 | 5_3:+53112754 | None:intergenic |
| AAGAAGTTACAATTAGAAGA+AGG | 0.410886 | 5_3:-53112729 | Msa0817730:CDS |
| CAAGCATTGGAAGCAGATCC+TGG | 0.412961 | 5_3:-53111113 | Msa0817730:CDS |
| CCTGTTTCTGTGGAGATTGA+AGG | 0.415093 | 5_3:-53112228 | Msa0817730:CDS |
| CTCAAAATCTCTTCTCTCTC+TGG | 0.418789 | 5_3:+53112813 | None:intergenic |
| GTGGATAAGAAAGGATAATT+GGG | 0.419900 | 5_3:-53111156 | Msa0817730:CDS |
| AAATGGATGATTCATTTGTT+TGG | 0.426457 | 5_3:-53112548 | Msa0817730:CDS |
| TTTCTTGTTGTGGATAAGAA+AGG | 0.430860 | 5_3:-53111165 | Msa0817730:CDS |
| GAAAGAAAAGTGAAAAGTGT+TGG | 0.436681 | 5_3:-53112780 | Msa0817730:CDS |
| AAAGAAAAGTGAAAAGTGTT+GGG | 0.437404 | 5_3:-53112779 | Msa0817730:CDS |
| TAACAACAATAACACTGTTA+AGG | 0.439226 | 5_3:-53112439 | Msa0817730:CDS |
| ATCAGAAGGAAGAGAATAAA+GGG | 0.448088 | 5_3:+53113049 | None:intergenic |
| CAAACAAGGGAGTTACTTTG+TGG | 0.448949 | 5_3:-53112609 | Msa0817730:CDS |
| CTACAATAAGCTTCAGCCTC+TGG | 0.454464 | 5_3:+53111197 | None:intergenic |
| TGAAGACTTGGAAAGTGTTA+TGG | 0.456088 | 5_3:-53112586 | Msa0817730:CDS |
| GGTTAAGCTAAATAGAGAAA+TGG | 0.459163 | 5_3:-53112565 | Msa0817730:CDS |
| TTCCTTCTCAAGAAACTTGA+GGG | 0.462431 | 5_3:-53112967 | Msa0817730:CDS |
| GTTTCTCTTCCTTGTCATGA+AGG | 0.469141 | 5_3:-53112109 | Msa0817730:CDS |
| GTTACTTTGTGGTGAAGACT+TGG | 0.471945 | 5_3:-53112598 | Msa0817730:CDS |
| AAAGATGCAAAGAGAATTGA+GGG | 0.474427 | 5_3:-53112292 | Msa0817730:CDS |
| ACCCCTCAAGTTTCTTGAGA+AGG | 0.474613 | 5_3:+53112965 | None:intergenic |
| GCTAGTTTCCTTTGGAACAC+TGG | 0.475032 | 5_3:-53111065 | Msa0817730:CDS |
| TCAAGATGAGTGTGTAAAGA+AGG | 0.482644 | 5_3:-53112367 | Msa0817730:CDS |
| AAAATCATGCTTTGCAAACA+AGG | 0.483766 | 5_3:-53112623 | Msa0817730:CDS |
| TCTTCTCTCTCTGGCCAACT+AGG | 0.491643 | 5_3:+53112822 | None:intergenic |
| GGTTGAATACCAAGAAAAGA+AGG | 0.496524 | 5_3:+53112852 | None:intergenic |
| ACTTCATTCATCAATGATGA+AGG | 0.496954 | 5_3:+53112408 | None:intergenic |
| GTTGTGGAATTCTTTGTTGG+AGG | 0.499754 | 5_3:-53112322 | Msa0817730:CDS |
| CTGTTTCTGTGGAGATTGAA+GGG | 0.509829 | 5_3:-53112227 | Msa0817730:CDS |
| TTTCCTTCTCAAGAAACTTG+AGG | 0.512218 | 5_3:-53112968 | Msa0817730:CDS |
| GCTGAGATATCTACAAGCAT+TGG | 0.512895 | 5_3:-53111126 | Msa0817730:CDS |
| CTTGTCATGAAGGACAATGA+TGG | 0.518352 | 5_3:-53112099 | Msa0817730:CDS |
| GCAAAGAGAATTGAGGGGTG+AGG | 0.519978 | 5_3:-53112286 | Msa0817730:CDS |
| CAAAGATGCAAAGAGAATTG+AGG | 0.524128 | 5_3:-53112293 | Msa0817730:CDS |
| GACAGAAGAAGTGAATTGTA+AGG | 0.526301 | 5_3:+53112144 | None:intergenic |
| GATTGAAGGGGATCAATATG+AGG | 0.534382 | 5_3:-53112214 | Msa0817730:CDS |
| CAGAAGAGGAAGAAAAGTTG+TGG | 0.546207 | 5_3:-53112338 | Msa0817730:CDS |
| CCACTGAGGAACAAAATCAA+TGG | 0.548168 | 5_3:-53112993 | Msa0817730:CDS |
| CTACAAGCAATCAGTGCTAG+TGG | 0.548836 | 5_3:-53111225 | Msa0817730:CDS |
| GATATGCTGATTTCTTGTTG+TGG | 0.552344 | 5_3:-53111175 | Msa0817730:CDS |
| GTTGTCCACCAGTGTTCCAA+AGG | 0.555476 | 5_3:+53111057 | None:intergenic |
| TTGTCATGAAGGACAATGAT+GGG | 0.556695 | 5_3:-53112098 | Msa0817730:intron |
| TTCAACCTGAACCACCTAGT+TGG | 0.568199 | 5_3:-53112836 | Msa0817730:CDS |
| AGTTTCCTTTGGAACACTGG+TGG | 0.570615 | 5_3:-53111062 | Msa0817730:CDS |
| AAAGAAGGAGTTAACAGAAG+AGG | 0.575932 | 5_3:-53112352 | Msa0817730:CDS |
| GGTGATTTCAATGAATCAGA+AGG | 0.590260 | 5_3:+53113035 | None:intergenic |
| TCTCTCTCTGGCCAACTAGG+TGG | 0.595097 | 5_3:+53112825 | None:intergenic |
| AAGAAGAACAAGAACAAGAA+CGG | 0.598620 | 5_3:+53112931 | None:intergenic |
| CATCATTGTCCTTCATGACA+AGG | 0.600117 | 5_3:+53112100 | None:intergenic |
| GTGTGTGAGTCCTGTTTCTG+TGG | 0.607525 | 5_3:-53112238 | Msa0817730:CDS |
| TGTTTCTGTGGAGATTGAAG+GGG | 0.609145 | 5_3:-53112226 | Msa0817730:CDS |
| ATAACATCAACCATAAGAGT+TGG | 0.609821 | 5_3:+53112498 | None:intergenic |
| AAATCATGCTTTGCAAACAA+GGG | 0.615943 | 5_3:-53112622 | Msa0817730:CDS |
| TCCTTCTCAAGAAACTTGAG+GGG | 0.638012 | 5_3:-53112966 | Msa0817730:CDS |
| CAGTTTCTTCTCTGCCACTG+AGG | 0.668935 | 5_3:-53113007 | Msa0817730:CDS |
| AGTGCTAGTGGAGTCACCAG+AGG | 0.684405 | 5_3:-53111213 | Msa0817730:CDS |
| TTGATGAATGAAGTTCTACA+TGG | 0.706429 | 5_3:-53112399 | Msa0817730:CDS |
| GGCAGAGAAGAAACTGAACG+TGG | 0.742162 | 5_3:+53113014 | None:intergenic |
| AAGATGCAAAGAGAATTGAG+GGG | 0.796557 | 5_3:-53112291 | Msa0817730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTCTATATAATAAAACTTA+AGG | + | chr5_3:53112428-53112447 | None:intergenic | 15.0% |
| !! | TGTCTATATAATAAAACTTA+AGG | + | chr5_3:53112428-53112447 | None:intergenic | 15.0% |
| !!! | CTCTTTTATTTTCATTATTG+TGG | + | chr5_3:53111216-53111235 | None:intergenic | 20.0% |
| !! | TGAAAATAAAAGAGAAATCT+TGG | - | chr5_3:53111222-53111241 | Msa0817730:CDS | 20.0% |
| !! | TAATCATCCTTATAGATAAA+GGG | + | chr5_3:53111348-53111367 | None:intergenic | 20.0% |
| !! | TTAATCATCCTTATAGATAA+AGG | + | chr5_3:53111349-53111368 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5_3:53112035-53112054 | Msa0817730:intron | 20.0% |
| !!! | TTAGATGTTTTTGCATTATA+TGG | - | chr5_3:53112064-53112083 | Msa0817730:intron | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5_3:53112316-53112335 | Msa0817730:CDS | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | chr5_3:53112721-53112740 | None:intergenic | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5_3:53112835-53112854 | None:intergenic | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5_3:53112833-53112852 | Msa0817730:CDS | 20.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5_3:53113088-53113107 | None:intergenic | 20.0% |
| !!! | CTCTTTTATTTTCATTATTG+TGG | + | chr5_3:53111216-53111235 | None:intergenic | 20.0% |
| !! | TGAAAATAAAAGAGAAATCT+TGG | - | chr5_3:53111222-53111241 | Msa0817730:CDS | 20.0% |
| !! | TAATCATCCTTATAGATAAA+GGG | + | chr5_3:53111348-53111367 | None:intergenic | 20.0% |
| !! | TTAATCATCCTTATAGATAA+AGG | + | chr5_3:53111349-53111368 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5_3:53112035-53112054 | Msa0817730:intron | 20.0% |
| !!! | TTAGATGTTTTTGCATTATA+TGG | - | chr5_3:53112064-53112083 | Msa0817730:intron | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5_3:53112316-53112335 | Msa0817730:CDS | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | chr5_3:53112721-53112740 | None:intergenic | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5_3:53112835-53112854 | None:intergenic | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5_3:53112833-53112852 | Msa0817730:CDS | 20.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5_3:53113088-53113107 | None:intergenic | 20.0% |
| !! | AGTTTCCAATATTCAAGTTT+GGG | + | chr5_3:53111025-53111044 | None:intergenic | 25.0% |
| !! | TAGTTTCCAATATTCAAGTT+TGG | + | chr5_3:53111026-53111045 | None:intergenic | 25.0% |
| !!! | AAAGAAAAGTGAAAAGTGTT+GGG | - | chr5_3:53111320-53111339 | Msa0817730:intron | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5_3:53111370-53111389 | Msa0817730:intron | 25.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | chr5_3:53111551-53111570 | Msa0817730:intron | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5_3:53111660-53111679 | Msa0817730:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5_3:53112141-53112160 | Msa0817730:CDS | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5_3:53112153-53112172 | None:intergenic | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5_3:53112201-53112220 | None:intergenic | 25.0% |
| ! | ACATTATGCTTATGTATGTT+AGG | - | chr5_3:53112445-53112464 | Msa0817730:CDS | 25.0% |
| ! | ATGTATGTTAGGTACAAAAA+AGG | - | chr5_3:53112456-53112475 | Msa0817730:CDS | 25.0% |
| !!! | AAGAGCTAAAAGTATTTTGA+AGG | + | chr5_3:53112697-53112716 | None:intergenic | 25.0% |
| !! | AGTTTCCAATATTCAAGTTT+GGG | + | chr5_3:53111025-53111044 | None:intergenic | 25.0% |
| !! | TAGTTTCCAATATTCAAGTT+TGG | + | chr5_3:53111026-53111045 | None:intergenic | 25.0% |
| !!! | AAAGAAAAGTGAAAAGTGTT+GGG | - | chr5_3:53111320-53111339 | Msa0817730:intron | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5_3:53111370-53111389 | Msa0817730:intron | 25.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | chr5_3:53111551-53111570 | Msa0817730:intron | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5_3:53111660-53111679 | Msa0817730:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5_3:53112141-53112160 | Msa0817730:CDS | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5_3:53112153-53112172 | None:intergenic | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5_3:53112201-53112220 | None:intergenic | 25.0% |
| ! | ACATTATGCTTATGTATGTT+AGG | - | chr5_3:53112445-53112464 | Msa0817730:CDS | 25.0% |
| ! | ATGTATGTTAGGTACAAAAA+AGG | - | chr5_3:53112456-53112475 | Msa0817730:CDS | 25.0% |
| !!! | AAGAGCTAAAAGTATTTTGA+AGG | + | chr5_3:53112697-53112716 | None:intergenic | 25.0% |
| ATCAGAAGGAAGAGAATAAA+GGG | + | chr5_3:53111053-53111072 | None:intergenic | 30.0% | |
| AATCAGAAGGAAGAGAATAA+AGG | + | chr5_3:53111054-53111073 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAACAAGAA+CGG | + | chr5_3:53111171-53111190 | None:intergenic | 30.0% | |
| ! | GAAAGAAAAGTGAAAAGTGT+TGG | - | chr5_3:53111319-53111338 | Msa0817730:intron | 30.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5_3:53111476-53111495 | Msa0817730:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5_3:53111477-53111496 | Msa0817730:intron | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | chr5_3:53111534-53111553 | Msa0817730:intron | 30.0% | |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5_3:53111564-53111583 | Msa0817730:intron | 30.0% |
| ATAACATCAACCATAAGAGT+TGG | + | chr5_3:53111604-53111623 | None:intergenic | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5_3:53111603-53111622 | Msa0817730:intron | 30.0% |
| ACTTCATTCATCAATGATGA+AGG | + | chr5_3:53111694-53111713 | None:intergenic | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5_3:53111700-53111719 | Msa0817730:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5_3:53111774-53111793 | Msa0817730:intron | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5_3:53111807-53111826 | Msa0817730:intron | 30.0% | |
| TTTGTTCCTTTATGCAATGA+AGG | - | chr5_3:53112254-53112273 | Msa0817730:CDS | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | chr5_3:53112255-53112274 | Msa0817730:CDS | 30.0% | |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | chr5_3:53112327-53112346 | Msa0817730:CDS | 30.0% |
| TCAAAATCTGCGTTGAAATA+TGG | - | chr5_3:53112584-53112603 | Msa0817730:CDS | 30.0% | |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5_3:53112934-53112953 | Msa0817730:CDS | 30.0% |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5_3:53112942-53112961 | Msa0817730:CDS | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5_3:53112943-53112962 | Msa0817730:CDS | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | chr5_3:53113007-53113026 | None:intergenic | 30.0% | |
| ATCAGAAGGAAGAGAATAAA+GGG | + | chr5_3:53111053-53111072 | None:intergenic | 30.0% | |
| AATCAGAAGGAAGAGAATAA+AGG | + | chr5_3:53111054-53111073 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAACAAGAA+CGG | + | chr5_3:53111171-53111190 | None:intergenic | 30.0% | |
| ! | GAAAGAAAAGTGAAAAGTGT+TGG | - | chr5_3:53111319-53111338 | Msa0817730:intron | 30.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5_3:53111476-53111495 | Msa0817730:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5_3:53111477-53111496 | Msa0817730:intron | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | chr5_3:53111534-53111553 | Msa0817730:intron | 30.0% | |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5_3:53111564-53111583 | Msa0817730:intron | 30.0% |
| ATAACATCAACCATAAGAGT+TGG | + | chr5_3:53111604-53111623 | None:intergenic | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5_3:53111603-53111622 | Msa0817730:intron | 30.0% |
| ACTTCATTCATCAATGATGA+AGG | + | chr5_3:53111694-53111713 | None:intergenic | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5_3:53111700-53111719 | Msa0817730:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5_3:53111774-53111793 | Msa0817730:intron | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5_3:53111807-53111826 | Msa0817730:intron | 30.0% | |
| TTTGTTCCTTTATGCAATGA+AGG | - | chr5_3:53112254-53112273 | Msa0817730:CDS | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | chr5_3:53112255-53112274 | Msa0817730:CDS | 30.0% | |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | chr5_3:53112327-53112346 | Msa0817730:CDS | 30.0% |
| TCAAAATCTGCGTTGAAATA+TGG | - | chr5_3:53112584-53112603 | Msa0817730:CDS | 30.0% | |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5_3:53112934-53112953 | Msa0817730:CDS | 30.0% |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5_3:53112942-53112961 | Msa0817730:CDS | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5_3:53112943-53112962 | Msa0817730:CDS | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | chr5_3:53113007-53113026 | None:intergenic | 30.0% | |
| TCTCTCCCAAACTTGAATAT+TGG | - | chr5_3:53111017-53111036 | Msa0817730:CDS | 35.0% | |
| GGTGATTTCAATGAATCAGA+AGG | + | chr5_3:53111067-53111086 | None:intergenic | 35.0% | |
| TTTCCTTCTCAAGAAACTTG+AGG | - | chr5_3:53111131-53111150 | Msa0817730:CDS | 35.0% | |
| TTCCTTCTCAAGAAACTTGA+GGG | - | chr5_3:53111132-53111151 | Msa0817730:CDS | 35.0% | |
| ! | ATCTTGGAACCTTCTTTTCT+TGG | - | chr5_3:53111238-53111257 | Msa0817730:CDS | 35.0% |
| GGTTGAATACCAAGAAAAGA+AGG | + | chr5_3:53111250-53111269 | None:intergenic | 35.0% | |
| TTGGGATCCCTTTATCTATA+AGG | - | chr5_3:53111338-53111357 | Msa0817730:intron | 35.0% | |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5_3:53111513-53111532 | Msa0817730:intron | 35.0% |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5_3:53111732-53111751 | Msa0817730:intron | 35.0% | |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5_3:53111747-53111766 | Msa0817730:intron | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5_3:53111806-53111825 | Msa0817730:intron | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5_3:53111808-53111827 | Msa0817730:intron | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5_3:53111958-53111977 | None:intergenic | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5_3:53112001-53112020 | Msa0817730:intron | 35.0% | |
| !!! | ATGGTTTTAAATTGCAGTCG+CGG | - | chr5_3:53112083-53112102 | Msa0817730:intron | 35.0% |
| TGTTCCTTTATGCAATGAAG+GGG | - | chr5_3:53112256-53112275 | Msa0817730:CDS | 35.0% | |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | chr5_3:53112326-53112345 | Msa0817730:CDS | 35.0% |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | chr5_3:53112342-53112361 | None:intergenic | 35.0% |
| GTTGTGATTACACACAATTC+AGG | + | chr5_3:53112483-53112502 | None:intergenic | 35.0% | |
| GTTAGCCACATCTAATTAGA+CGG | - | chr5_3:53112518-53112537 | Msa0817730:CDS | 35.0% | |
| CTAAACCGTCTAATTAGATG+TGG | + | chr5_3:53112526-53112545 | None:intergenic | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | chr5_3:53112655-53112674 | None:intergenic | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | chr5_3:53112656-53112675 | Msa0817730:CDS | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | chr5_3:53112661-53112680 | None:intergenic | 35.0% | |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5_3:53112924-53112943 | Msa0817730:CDS | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5_3:53113026-53113045 | Msa0817730:CDS | 35.0% |
| TCTCTCCCAAACTTGAATAT+TGG | - | chr5_3:53111017-53111036 | Msa0817730:CDS | 35.0% | |
| GGTGATTTCAATGAATCAGA+AGG | + | chr5_3:53111067-53111086 | None:intergenic | 35.0% | |
| TTTCCTTCTCAAGAAACTTG+AGG | - | chr5_3:53111131-53111150 | Msa0817730:CDS | 35.0% | |
| TTCCTTCTCAAGAAACTTGA+GGG | - | chr5_3:53111132-53111151 | Msa0817730:CDS | 35.0% | |
| ! | ATCTTGGAACCTTCTTTTCT+TGG | - | chr5_3:53111238-53111257 | Msa0817730:CDS | 35.0% |
| GGTTGAATACCAAGAAAAGA+AGG | + | chr5_3:53111250-53111269 | None:intergenic | 35.0% | |
| TTGGGATCCCTTTATCTATA+AGG | - | chr5_3:53111338-53111357 | Msa0817730:intron | 35.0% | |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5_3:53111513-53111532 | Msa0817730:intron | 35.0% |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5_3:53111732-53111751 | Msa0817730:intron | 35.0% | |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5_3:53111747-53111766 | Msa0817730:intron | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5_3:53111806-53111825 | Msa0817730:intron | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5_3:53111808-53111827 | Msa0817730:intron | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5_3:53111958-53111977 | None:intergenic | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5_3:53112001-53112020 | Msa0817730:intron | 35.0% | |
| !!! | ATGGTTTTAAATTGCAGTCG+CGG | - | chr5_3:53112083-53112102 | Msa0817730:intron | 35.0% |
| TGTTCCTTTATGCAATGAAG+GGG | - | chr5_3:53112256-53112275 | Msa0817730:CDS | 35.0% | |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | chr5_3:53112326-53112345 | Msa0817730:CDS | 35.0% |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | chr5_3:53112342-53112361 | None:intergenic | 35.0% |
| GTTGTGATTACACACAATTC+AGG | + | chr5_3:53112483-53112502 | None:intergenic | 35.0% | |
| GTTAGCCACATCTAATTAGA+CGG | - | chr5_3:53112518-53112537 | Msa0817730:CDS | 35.0% | |
| CTAAACCGTCTAATTAGATG+TGG | + | chr5_3:53112526-53112545 | None:intergenic | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | chr5_3:53112655-53112674 | None:intergenic | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | chr5_3:53112656-53112675 | Msa0817730:CDS | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | chr5_3:53112661-53112680 | None:intergenic | 35.0% | |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5_3:53112924-53112943 | Msa0817730:CDS | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5_3:53113026-53113045 | Msa0817730:CDS | 35.0% |
| !!! | CCATTGATTTTGTTCCTCAG+TGG | + | chr5_3:53111109-53111128 | None:intergenic | 40.0% |
| CCACTGAGGAACAAAATCAA+TGG | - | chr5_3:53111106-53111125 | Msa0817730:CDS | 40.0% | |
| TCCTTCTCAAGAAACTTGAG+GGG | - | chr5_3:53111133-53111152 | Msa0817730:CDS | 40.0% | |
| CTCAAAATCTCTTCTCTCTC+TGG | + | chr5_3:53111289-53111308 | None:intergenic | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5_3:53111490-53111509 | Msa0817730:intron | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5_3:53111501-53111520 | Msa0817730:intron | 40.0% |
| CAGTGAAACACCAACTCTTA+TGG | - | chr5_3:53111591-53111610 | Msa0817730:intron | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5_3:53111761-53111780 | Msa0817730:intron | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5_3:53111777-53111796 | Msa0817730:intron | 40.0% | |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5_3:53111872-53111891 | Msa0817730:intron | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5_3:53111873-53111892 | Msa0817730:intron | 40.0% |
| GATTGAAGGGGATCAATATG+AGG | - | chr5_3:53111885-53111904 | Msa0817730:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5_3:53111990-53112009 | Msa0817730:intron | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5_3:53112002-53112021 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5_3:53112000-53112019 | Msa0817730:intron | 40.0% | |
| CGCGGTTATGCTATAAAATG+CGG | - | chr5_3:53112101-53112120 | Msa0817730:CDS | 40.0% | |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5_3:53112263-53112282 | None:intergenic | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | chr5_3:53112644-53112663 | None:intergenic | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | chr5_3:53112973-53112992 | Msa0817730:CDS | 40.0% | |
| !!! | CCATTGATTTTGTTCCTCAG+TGG | + | chr5_3:53111109-53111128 | None:intergenic | 40.0% |
| CCACTGAGGAACAAAATCAA+TGG | - | chr5_3:53111106-53111125 | Msa0817730:CDS | 40.0% | |
| TCCTTCTCAAGAAACTTGAG+GGG | - | chr5_3:53111133-53111152 | Msa0817730:CDS | 40.0% | |
| CTCAAAATCTCTTCTCTCTC+TGG | + | chr5_3:53111289-53111308 | None:intergenic | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5_3:53111490-53111509 | Msa0817730:intron | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5_3:53111501-53111520 | Msa0817730:intron | 40.0% |
| CAGTGAAACACCAACTCTTA+TGG | - | chr5_3:53111591-53111610 | Msa0817730:intron | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5_3:53111761-53111780 | Msa0817730:intron | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5_3:53111777-53111796 | Msa0817730:intron | 40.0% | |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5_3:53111872-53111891 | Msa0817730:intron | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5_3:53111873-53111892 | Msa0817730:intron | 40.0% |
| GATTGAAGGGGATCAATATG+AGG | - | chr5_3:53111885-53111904 | Msa0817730:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5_3:53111990-53112009 | Msa0817730:intron | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5_3:53112002-53112021 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5_3:53112000-53112019 | Msa0817730:intron | 40.0% | |
| CGCGGTTATGCTATAAAATG+CGG | - | chr5_3:53112101-53112120 | Msa0817730:CDS | 40.0% | |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5_3:53112263-53112282 | None:intergenic | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | chr5_3:53112644-53112663 | None:intergenic | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | chr5_3:53112973-53112992 | Msa0817730:CDS | 40.0% | |
| ACCCCTCAAGTTTCTTGAGA+AGG | + | chr5_3:53111137-53111156 | None:intergenic | 45.0% | |
| TTCAACCTGAACCACCTAGT+TGG | - | chr5_3:53111263-53111282 | Msa0817730:intron | 45.0% | |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5_3:53111819-53111838 | Msa0817730:intron | 45.0% | |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5_3:53111874-53111893 | None:intergenic | 45.0% | |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5_3:53111871-53111890 | Msa0817730:intron | 45.0% |
| ATGCGGTCGATGTTGTTCAT+AGG | - | chr5_3:53112118-53112137 | Msa0817730:CDS | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | chr5_3:53112506-53112525 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | chr5_3:53112874-53112893 | Msa0817730:CDS | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | chr5_3:53112905-53112924 | None:intergenic | 45.0% | |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5_3:53113034-53113053 | Msa0817730:CDS | 45.0% |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5_3:53113037-53113056 | Msa0817730:CDS | 45.0% |
| ACCCCTCAAGTTTCTTGAGA+AGG | + | chr5_3:53111137-53111156 | None:intergenic | 45.0% | |
| TTCAACCTGAACCACCTAGT+TGG | - | chr5_3:53111263-53111282 | Msa0817730:intron | 45.0% | |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5_3:53111819-53111838 | Msa0817730:intron | 45.0% | |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5_3:53111874-53111893 | None:intergenic | 45.0% | |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5_3:53111871-53111890 | Msa0817730:intron | 45.0% |
| ATGCGGTCGATGTTGTTCAT+AGG | - | chr5_3:53112118-53112137 | Msa0817730:CDS | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | chr5_3:53112506-53112525 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | chr5_3:53112874-53112893 | Msa0817730:CDS | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | chr5_3:53112905-53112924 | None:intergenic | 45.0% | |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5_3:53113034-53113053 | Msa0817730:CDS | 45.0% |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5_3:53113037-53113056 | Msa0817730:CDS | 45.0% |
| GGCAGAGAAGAAACTGAACG+TGG | + | chr5_3:53111088-53111107 | None:intergenic | 50.0% | |
| CAGTTTCTTCTCTGCCACTG+AGG | - | chr5_3:53111092-53111111 | Msa0817730:CDS | 50.0% | |
| TCTTCTCTCTCTGGCCAACT+AGG | + | chr5_3:53111280-53111299 | None:intergenic | 50.0% | |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5_3:53111813-53111832 | Msa0817730:intron | 50.0% | |
| !! | GTGTGTGAGTCCTGTTTCTG+TGG | - | chr5_3:53111861-53111880 | Msa0817730:intron | 50.0% |
| GGCTAACTATGCGCAATCAC+GGG | + | chr5_3:53112505-53112524 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5_3:53112986-53113005 | Msa0817730:CDS | 50.0% |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5_3:53113045-53113064 | None:intergenic | 50.0% | |
| GGCAGAGAAGAAACTGAACG+TGG | + | chr5_3:53111088-53111107 | None:intergenic | 50.0% | |
| CAGTTTCTTCTCTGCCACTG+AGG | - | chr5_3:53111092-53111111 | Msa0817730:CDS | 50.0% | |
| TCTTCTCTCTCTGGCCAACT+AGG | + | chr5_3:53111280-53111299 | None:intergenic | 50.0% | |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5_3:53111813-53111832 | Msa0817730:intron | 50.0% | |
| !! | GTGTGTGAGTCCTGTTTCTG+TGG | - | chr5_3:53111861-53111880 | Msa0817730:intron | 50.0% |
| GGCTAACTATGCGCAATCAC+GGG | + | chr5_3:53112505-53112524 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5_3:53112986-53113005 | Msa0817730:CDS | 50.0% |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5_3:53113045-53113064 | None:intergenic | 50.0% | |
| TCTGGCCAACTAGGTGGTTC+AGG | + | chr5_3:53111271-53111290 | None:intergenic | 55.0% | |
| TCTCTCTCTGGCCAACTAGG+TGG | + | chr5_3:53111277-53111296 | None:intergenic | 55.0% | |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5_3:53112886-53112905 | Msa0817730:CDS | 55.0% | |
| TCTGGCCAACTAGGTGGTTC+AGG | + | chr5_3:53111271-53111290 | None:intergenic | 55.0% | |
| TCTCTCTCTGGCCAACTAGG+TGG | + | chr5_3:53111277-53111296 | None:intergenic | 55.0% | |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5_3:53112886-53112905 | Msa0817730:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 53111004 | 53113117 | 53111004 | ID=Msa0817730;Name=Msa0817730 |
| chr5_3 | mRNA | 53111004 | 53113117 | 53111004 | ID=Msa0817730-mRNA-1;Parent=Msa0817730;Name=Msa0817730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|424 |
| chr5_3 | exon | 53112099 | 53113117 | 53112099 | ID=Msa0817730-mRNA-1:exon:16004;Parent=Msa0817730-mRNA-1 |
| chr5_3 | exon | 53111004 | 53111259 | 53111004 | ID=Msa0817730-mRNA-1:exon:16003;Parent=Msa0817730-mRNA-1 |
| chr5_3 | CDS | 53112099 | 53113117 | 53112099 | ID=Msa0817730-mRNA-1:cds;Parent=Msa0817730-mRNA-1 |
| chr5_3 | CDS | 53111004 | 53111259 | 53111004 | ID=Msa0817730-mRNA-1:cds;Parent=Msa0817730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
