Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858180 | XP_003616591.1 | 95.755 | 424 | 10 | 1 | 1 | 424 | 1 | 416 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858180 | G7KGW7 | 95.755 | 424 | 10 | 1 | 1 | 424 | 1 | 416 | 0.0 | 823 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa0858180 | 0.816646 | 4.967804e-52 | -8.615850e-47 |
| Msa0015930 | Msa0858180 | 0.836494 | 9.053189e-57 | -8.615850e-47 |
| Msa0023000 | Msa0858180 | 0.841600 | 4.306831e-58 | -8.615850e-47 |
| Msa0023010 | Msa0858180 | 0.805151 | 1.532879e-49 | -8.615850e-47 |
| Msa0023040 | Msa0858180 | 0.807142 | 5.841368e-50 | -8.615850e-47 |
| Msa0026680 | Msa0858180 | 0.856284 | 3.569957e-62 | -8.615850e-47 |
| Msa0032580 | Msa0858180 | 0.817389 | 3.381867e-52 | -8.615850e-47 |
| Msa0052770 | Msa0858180 | 0.804167 | 2.460139e-49 | -8.615850e-47 |
| Msa0058300 | Msa0858180 | 0.815133 | 1.080471e-51 | -8.615850e-47 |
| Msa0097780 | Msa0858180 | 0.802644 | 5.087629e-49 | -8.615850e-47 |
| Msa0118780 | Msa0858180 | 0.831678 | 1.456602e-55 | -8.615850e-47 |
| Msa0118810 | Msa0858180 | 0.809177 | 2.152387e-50 | -8.615850e-47 |
| Msa0605650 | Msa0858180 | 0.840135 | 1.043655e-57 | -8.615850e-47 |
| Msa0632870 | Msa0858180 | 0.806197 | 9.244288e-50 | -8.615850e-47 |
| Msa0671740 | Msa0858180 | 0.805460 | 1.320566e-49 | -8.615850e-47 |
| Msa0686220 | Msa0858180 | 0.804349 | 2.254027e-49 | -8.615850e-47 |
| Msa0708930 | Msa0858180 | 0.847179 | 1.361761e-59 | -8.615850e-47 |
| Msa0717230 | Msa0858180 | -0.827287 | 1.700670e-54 | -8.615850e-47 |
| Msa0738380 | Msa0858180 | 0.912142 | 2.730974e-83 | -8.615850e-47 |
| Msa0784860 | Msa0858180 | 0.902851 | 6.347773e-79 | -8.615850e-47 |
| Msa0793380 | Msa0858180 | 0.801378 | 9.263132e-49 | -8.615850e-47 |
| Msa0799680 | Msa0858180 | -0.818395 | 2.004220e-52 | -8.615850e-47 |
| Msa0817730 | Msa0858180 | 0.996637 | 3.752732e-230 | -8.615850e-47 |
| Msa0818750 | Msa0858180 | 0.829423 | 5.189571e-55 | -8.615850e-47 |
| Msa0140630 | Msa0858180 | 0.801786 | 7.640827e-49 | -8.615850e-47 |
| Msa0145080 | Msa0858180 | 0.854372 | 1.286015e-61 | -8.615850e-47 |
| Msa0145160 | Msa0858180 | 0.825305 | 5.041089e-54 | -8.615850e-47 |
| Msa0145730 | Msa0858180 | 0.816895 | 4.368648e-52 | -8.615850e-47 |
| Msa0156370 | Msa0858180 | 0.826210 | 3.073849e-54 | -8.615850e-47 |
| Msa0162100 | Msa0858180 | 0.821355 | 4.220064e-53 | -8.615850e-47 |
| Msa0162120 | Msa0858180 | 0.802306 | 5.972142e-49 | -8.615850e-47 |
| Msa0162130 | Msa0858180 | 0.853948 | 1.704694e-61 | -8.615850e-47 |
| Msa0172970 | Msa0858180 | 0.815051 | 1.126738e-51 | -8.615850e-47 |
| Msa0189520 | Msa0858180 | 0.812694 | 3.727690e-51 | -8.615850e-47 |
| Msa0381500 | Msa0858180 | 0.802756 | 4.822783e-49 | -8.615850e-47 |
| Msa0402210 | Msa0858180 | 0.838037 | 3.648209e-57 | -8.615850e-47 |
| Msa0256330 | Msa0858180 | 0.816805 | 4.575787e-52 | -8.615850e-47 |
| Msa0295330 | Msa0858180 | 0.819731 | 9.958373e-53 | -8.615850e-47 |
| Msa0345350 | Msa0858180 | 0.812318 | 4.504136e-51 | -8.615850e-47 |
| Msa0355140 | Msa0858180 | 0.838562 | 2.671137e-57 | -8.615850e-47 |
| Msa0483770 | Msa0858180 | 0.829043 | 6.419138e-55 | -8.615850e-47 |
| Msa0519950 | Msa0858180 | 0.800830 | 1.198674e-48 | -8.615850e-47 |
| Msa0534900 | Msa0858180 | 0.840495 | 8.403693e-58 | -8.615850e-47 |
| Msa0550120 | Msa0858180 | 0.809539 | 1.800009e-50 | -8.615850e-47 |
| Msa0550150 | Msa0858180 | 0.801361 | 9.339119e-49 | -8.615850e-47 |
| Msa0858180 | Msa0867730 | 0.822066 | 2.889717e-53 | -8.615850e-47 |
| Msa0858180 | Msa0870150 | 0.802365 | 5.807764e-49 | -8.615850e-47 |
| Msa0858180 | Msa0919020 | 0.804368 | 2.234373e-49 | -8.615850e-47 |
| Msa0858180 | Msa0956410 | 0.838186 | 3.340406e-57 | -8.615850e-47 |
| Msa0858180 | Msa0968610 | 0.809013 | 2.333739e-50 | -8.615850e-47 |
| Msa0858180 | Msa1030620 | 0.835598 | 1.528535e-56 | -8.615850e-47 |
| Msa0858180 | Msa1037420 | 0.841830 | 3.744241e-58 | -8.615850e-47 |
| Msa0858180 | Msa1051200 | 0.803673 | 3.116600e-49 | -8.615850e-47 |
| Msa0858180 | Msa1115080 | 0.815788 | 7.725395e-52 | -8.615850e-47 |
| Msa0858180 | Msa1123810 | 0.845033 | 5.225554e-59 | -8.615850e-47 |
| Msa0858180 | Msa1137700 | 0.803323 | 3.683246e-49 | -8.615850e-47 |
| Msa0858180 | Msa1170880 | 0.802724 | 4.896588e-49 | -8.615850e-47 |
| Msa0858180 | Msa1173140 | 0.802856 | 4.599281e-49 | -8.615850e-47 |
| Msa0858180 | Msa1212190 | 0.809136 | 2.196528e-50 | -8.615850e-47 |
| Msa0858180 | Msa1212270 | 0.805769 | 1.137796e-49 | -8.615850e-47 |
| Msa0858180 | Msa1231840 | 0.804387 | 2.213745e-49 | -8.615850e-47 |
| Msa0858180 | Msa1259910 | 0.807196 | 5.689330e-50 | -8.615850e-47 |
| Msa0858180 | Msa1353750 | 0.849330 | 3.466417e-60 | -8.615850e-47 |
| Msa0858180 | Msa1385770 | 0.829940 | 3.885725e-55 | -8.615850e-47 |
| Msa0858180 | Msa1409240 | 0.828081 | 1.095907e-54 | -8.615850e-47 |
| Msa0858180 | Msa1434140 | 0.823976 | 1.036061e-53 | -8.615850e-47 |
| Msa0858180 | Msa1465960 | 0.802015 | 6.856073e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858180 | MtrunA17_Chr5g0436741 | 95.755 | 424 | 10 | 1 | 1 | 424 | 1 | 416 | 0.0 | 823 |
| Msa0858180 | MtrunA17_Chr3g0104511 | 40.464 | 388 | 162 | 6 | 85 | 418 | 136 | 508 | 3.74e-84 | 266 |
| Msa0858180 | MtrunA17_Chr2g0333081 | 40.187 | 107 | 64 | 0 | 304 | 410 | 137 | 243 | 5.90e-18 | 83.6 |
| Msa0858180 | MtrunA17_Chr7g0262061 | 31.073 | 177 | 116 | 2 | 231 | 404 | 151 | 324 | 2.37e-17 | 82.8 |
| Msa0858180 | MtrunA17_Chr7g0262541 | 35.849 | 106 | 66 | 1 | 309 | 414 | 240 | 343 | 1.99e-15 | 77.4 |
| Msa0858180 | MtrunA17_Chr4g0063891 | 38.679 | 106 | 65 | 0 | 297 | 402 | 153 | 258 | 1.04e-14 | 74.3 |
| Msa0858180 | MtrunA17_Chr1g0186111 | 36.458 | 96 | 61 | 0 | 309 | 404 | 276 | 371 | 1.08e-11 | 66.2 |
| Msa0858180 | MtrunA17_Chr5g0411051 | 33.684 | 95 | 63 | 0 | 308 | 402 | 124 | 218 | 5.26e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858180 | AT3G47080.1 | 38.814 | 371 | 178 | 8 | 78 | 418 | 158 | 509 | 4.07e-77 | 248 |
| Msa0858180 | AT2G29670.1 | 47.879 | 165 | 83 | 1 | 254 | 418 | 368 | 529 | 1.69e-44 | 162 |
| Msa0858180 | AT2G29670.1 | 51.408 | 142 | 63 | 4 | 90 | 230 | 137 | 273 | 6.38e-36 | 139 |
| Msa0858180 | AT2G29670.2 | 47.879 | 165 | 83 | 1 | 254 | 418 | 368 | 529 | 1.69e-44 | 162 |
| Msa0858180 | AT2G29670.2 | 51.408 | 142 | 63 | 4 | 90 | 230 | 137 | 273 | 6.38e-36 | 139 |
| Msa0858180 | AT1G07280.3 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 2.48e-44 | 162 |
| Msa0858180 | AT1G07280.3 | 47.561 | 164 | 77 | 2 | 254 | 417 | 389 | 543 | 2.66e-41 | 154 |
| Msa0858180 | AT1G07280.1 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 2.48e-44 | 162 |
| Msa0858180 | AT1G07280.1 | 47.561 | 164 | 77 | 2 | 254 | 417 | 389 | 543 | 2.66e-41 | 154 |
| Msa0858180 | AT1G07280.2 | 32.948 | 346 | 190 | 8 | 90 | 402 | 160 | 496 | 2.48e-44 | 162 |
| Msa0858180 | AT1G07280.2 | 47.561 | 164 | 77 | 2 | 254 | 417 | 389 | 543 | 2.66e-41 | 154 |
| Msa0858180 | AT1G07280.4 | 31.746 | 315 | 200 | 5 | 90 | 402 | 160 | 461 | 3.47e-42 | 155 |
| Msa0858180 | AT1G07280.4 | 47.191 | 89 | 41 | 1 | 254 | 342 | 389 | 471 | 1.31e-16 | 82.0 |
| Msa0858180 | AT4G17940.1 | 37.255 | 102 | 64 | 0 | 301 | 402 | 145 | 246 | 2.44e-15 | 76.3 |
| Msa0858180 | AT5G20190.1 | 40.404 | 99 | 59 | 0 | 306 | 404 | 156 | 254 | 1.97e-14 | 73.9 |
| Msa0858180 | AT1G80130.1 | 38.384 | 99 | 61 | 0 | 304 | 402 | 163 | 261 | 1.23e-13 | 71.6 |
| Msa0858180 | AT4G32340.1 | 38.384 | 99 | 60 | 1 | 307 | 404 | 111 | 209 | 8.86e-12 | 65.1 |
Find 77 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATAAGAAAGGATAAT+TGG | 0.189834 | 5_4:-55406998 | Msa0858180:CDS |
| AGAATTGAGGGGTGAGGATT+TGG | 0.196047 | 5_4:-55408119 | Msa0858180:CDS |
| AACTCTTATGGTTGATGTTA+TGG | 0.249882 | 5_4:-55408335 | Msa0858180:CDS |
| TTAATCATCCTTATAGATAA+AGG | 0.257329 | 5_4:+55408592 | None:intergenic |
| CAGTGAAACACCAACTCTTA+TGG | 0.277824 | 5_4:-55408347 | Msa0858180:CDS |
| TCTCTCCCAAACTTGAATAT+TGG | 0.313359 | 5_4:-55408921 | Msa0858180:CDS |
| TTGGGATCCCTTTATCTATA+AGG | 0.320106 | 5_4:-55408600 | Msa0858180:CDS |
| AATCAGAAGGAAGAGAATAA+AGG | 0.320334 | 5_4:+55408887 | None:intergenic |
| TAGTTTCCAATATTCAAGTT+TGG | 0.321034 | 5_4:+55408915 | None:intergenic |
| GATAAATAGTAAGTGTTTCC+AGG | 0.335813 | 5_4:+55406936 | None:intergenic |
| CAAAGTATGCTAGTTTCCTT+TGG | 0.340397 | 5_4:-55406914 | Msa0858180:CDS |
| ATTTGTTTGGTTGTTTCAAC+AGG | 0.342400 | 5_4:-55408374 | Msa0858180:CDS |
| TGAAAATAAAAGAGAAATCT+TGG | 0.349066 | 5_4:-55408716 | Msa0858180:CDS |
| TCTGGCCAACTAGGTGGTTC+AGG | 0.352770 | 5_4:+55408670 | None:intergenic |
| AGTTTCCAATATTCAAGTTT+GGG | 0.355232 | 5_4:+55408916 | None:intergenic |
| CCTTCAATCTCCACAGAAAC+AGG | 0.376600 | 5_4:+55408067 | None:intergenic |
| AAGTTATCTAATTCTTCTAT+AGG | 0.388681 | 5_4:+55406855 | None:intergenic |
| AAAGTTGTGGAATTCTTTGT+TGG | 0.394009 | 5_4:-55408164 | Msa0858180:CDS |
| TAATCATCCTTATAGATAAA+GGG | 0.401185 | 5_4:+55408593 | None:intergenic |
| AAGAAGTTACAATTAGAAGA+AGG | 0.410886 | 5_4:-55408568 | Msa0858180:CDS |
| CAAGCATTGGAAGCAGATCC+TGG | 0.412961 | 5_4:-55406954 | Msa0858180:CDS |
| CCTGTTTCTGTGGAGATTGA+AGG | 0.415093 | 5_4:-55408067 | Msa0858180:CDS |
| CTCAAAATCTCTTCTCTCTC+TGG | 0.418789 | 5_4:+55408652 | None:intergenic |
| GTGGATAAGAAAGGATAATT+GGG | 0.419900 | 5_4:-55406997 | Msa0858180:CDS |
| AAATGGATGATTCATTTGTT+TGG | 0.426457 | 5_4:-55408387 | Msa0858180:CDS |
| TTTCTTGTTGTGGATAAGAA+AGG | 0.430860 | 5_4:-55407006 | Msa0858180:CDS |
| GAAAGAAAAGTGAAAAGTGT+TGG | 0.436681 | 5_4:-55408619 | Msa0858180:CDS |
| AAAGAAAAGTGAAAAGTGTT+GGG | 0.437404 | 5_4:-55408618 | Msa0858180:CDS |
| TAACAACAATAACACTGTTA+AGG | 0.439226 | 5_4:-55408278 | Msa0858180:CDS |
| ATCAGAAGGAAGAGAATAAA+GGG | 0.448088 | 5_4:+55408888 | None:intergenic |
| CAAACAAGGGAGTTACTTTG+TGG | 0.448949 | 5_4:-55408448 | Msa0858180:CDS |
| CTACAATAAGCTTCAGCCTC+TGG | 0.454464 | 5_4:+55407038 | None:intergenic |
| TGAAGACTTGGAAAGTGTTA+TGG | 0.456088 | 5_4:-55408425 | Msa0858180:CDS |
| GGTTAAGCTAAATAGAGAAA+TGG | 0.459163 | 5_4:-55408404 | Msa0858180:CDS |
| TTCCTTCTCAAGAAACTTGA+GGG | 0.462431 | 5_4:-55408806 | Msa0858180:CDS |
| GTTTCTCTTCCTTGTCATGA+AGG | 0.469141 | 5_4:-55407948 | Msa0858180:CDS |
| GTTACTTTGTGGTGAAGACT+TGG | 0.471945 | 5_4:-55408437 | Msa0858180:CDS |
| AAAGATGCAAAGAGAATTGA+GGG | 0.474427 | 5_4:-55408131 | Msa0858180:CDS |
| ACCCCTCAAGTTTCTTGAGA+AGG | 0.474613 | 5_4:+55408804 | None:intergenic |
| GCTAGTTTCCTTTGGAACAC+TGG | 0.475032 | 5_4:-55406906 | Msa0858180:CDS |
| TCAAGATGAGTGTGTAAAGA+AGG | 0.482644 | 5_4:-55408206 | Msa0858180:CDS |
| AAAATCATGCTTTGCAAACA+AGG | 0.483766 | 5_4:-55408462 | Msa0858180:CDS |
| TCTTCTCTCTCTGGCCAACT+AGG | 0.491643 | 5_4:+55408661 | None:intergenic |
| GGTTGAATACCAAGAAAAGA+AGG | 0.496524 | 5_4:+55408691 | None:intergenic |
| ACTTCATTCATCAATGATGA+AGG | 0.496954 | 5_4:+55408247 | None:intergenic |
| GTTGTGGAATTCTTTGTTGG+AGG | 0.499754 | 5_4:-55408161 | Msa0858180:CDS |
| GTTTCTGAGTCCTGTTTCTG+TGG | 0.503600 | 5_4:-55408077 | Msa0858180:CDS |
| CTGTTTCTGTGGAGATTGAA+GGG | 0.509829 | 5_4:-55408066 | Msa0858180:CDS |
| TTTCCTTCTCAAGAAACTTG+AGG | 0.512218 | 5_4:-55408807 | Msa0858180:CDS |
| GCTGAGATATCTACAAGCAT+TGG | 0.512895 | 5_4:-55406967 | Msa0858180:CDS |
| CTTGTCATGAAGGACAATGA+TGG | 0.518352 | 5_4:-55407938 | Msa0858180:CDS |
| GCAAAGAGAATTGAGGGGTG+AGG | 0.519978 | 5_4:-55408125 | Msa0858180:CDS |
| CAAAGATGCAAAGAGAATTG+AGG | 0.524128 | 5_4:-55408132 | Msa0858180:CDS |
| GACAGAAGAAGTGAATTGTA+AGG | 0.526301 | 5_4:+55407983 | None:intergenic |
| GATTGAAGGGGATCAATATG+AGG | 0.534382 | 5_4:-55408053 | Msa0858180:CDS |
| CAGAAGAGGAAGAAAAGTTG+TGG | 0.546207 | 5_4:-55408177 | Msa0858180:CDS |
| CCACTGAGGAACAAAATCAA+TGG | 0.548168 | 5_4:-55408832 | Msa0858180:CDS |
| CTACAAGCAATCAGTGCTAG+TGG | 0.548836 | 5_4:-55407066 | Msa0858180:CDS |
| GATATGCTGATTTCTTGTTG+TGG | 0.552344 | 5_4:-55407016 | Msa0858180:CDS |
| GTTGTCCACCAGTGTTCCAA+AGG | 0.555476 | 5_4:+55406898 | None:intergenic |
| TTGTCATGAAGGACAATGAT+GGG | 0.556695 | 5_4:-55407937 | Msa0858180:intron |
| TTCAACCTGAACCACCTAGT+TGG | 0.568199 | 5_4:-55408675 | Msa0858180:CDS |
| AGTTTCCTTTGGAACACTGG+TGG | 0.570615 | 5_4:-55406903 | Msa0858180:CDS |
| AAAGAAGGAGTTAACAGAAG+AGG | 0.575932 | 5_4:-55408191 | Msa0858180:CDS |
| GGTGATTTCAATGAATCAGA+AGG | 0.590260 | 5_4:+55408874 | None:intergenic |
| TCTCTCTCTGGCCAACTAGG+TGG | 0.595097 | 5_4:+55408664 | None:intergenic |
| AAGAAGAACAAGAACAAGAA+CGG | 0.598620 | 5_4:+55408770 | None:intergenic |
| CATCATTGTCCTTCATGACA+AGG | 0.600117 | 5_4:+55407939 | None:intergenic |
| TGTTTCTGTGGAGATTGAAG+GGG | 0.609145 | 5_4:-55408065 | Msa0858180:CDS |
| ATAACATCAACCATAAGAGT+TGG | 0.609821 | 5_4:+55408337 | None:intergenic |
| AAATCATGCTTTGCAAACAA+GGG | 0.615943 | 5_4:-55408461 | Msa0858180:CDS |
| TCCTTCTCAAGAAACTTGAG+GGG | 0.638012 | 5_4:-55408805 | Msa0858180:CDS |
| CAGTTTCTTCTCTGCCACTG+AGG | 0.668935 | 5_4:-55408846 | Msa0858180:CDS |
| AGTGCTAGTGGAGTCACCAG+AGG | 0.684405 | 5_4:-55407054 | Msa0858180:CDS |
| TTGATGAATGAAGTTCTACA+TGG | 0.706429 | 5_4:-55408238 | Msa0858180:CDS |
| GGCAGAGAAGAAACTGAACG+TGG | 0.742162 | 5_4:+55408853 | None:intergenic |
| AAGATGCAAAGAGAATTGAG+GGG | 0.796557 | 5_4:-55408130 | Msa0858180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTCTATATAATAAAACTTA+AGG | + | chr5_4:55408269-55408288 | None:intergenic | 15.0% |
| !! | TGTCTATATAATAAAACTTA+AGG | + | chr5_4:55408269-55408288 | None:intergenic | 15.0% |
| !!! | CTCTTTTATTTTCATTATTG+TGG | + | chr5_4:55407057-55407076 | None:intergenic | 20.0% |
| !! | TGAAAATAAAAGAGAAATCT+TGG | - | chr5_4:55407063-55407082 | Msa0858180:CDS | 20.0% |
| !! | TAATCATCCTTATAGATAAA+GGG | + | chr5_4:55407189-55407208 | None:intergenic | 20.0% |
| !! | TTAATCATCCTTATAGATAA+AGG | + | chr5_4:55407190-55407209 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5_4:55407876-55407895 | Msa0858180:intron | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5_4:55408157-55408176 | Msa0858180:CDS | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | chr5_4:55408562-55408581 | None:intergenic | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5_4:55408674-55408693 | None:intergenic | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5_4:55408672-55408691 | Msa0858180:CDS | 20.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5_4:55408927-55408946 | None:intergenic | 20.0% |
| !!! | CTCTTTTATTTTCATTATTG+TGG | + | chr5_4:55407057-55407076 | None:intergenic | 20.0% |
| !! | TGAAAATAAAAGAGAAATCT+TGG | - | chr5_4:55407063-55407082 | Msa0858180:CDS | 20.0% |
| !! | TAATCATCCTTATAGATAAA+GGG | + | chr5_4:55407189-55407208 | None:intergenic | 20.0% |
| !! | TTAATCATCCTTATAGATAA+AGG | + | chr5_4:55407190-55407209 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5_4:55407876-55407895 | Msa0858180:intron | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5_4:55408157-55408176 | Msa0858180:CDS | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | chr5_4:55408562-55408581 | None:intergenic | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5_4:55408674-55408693 | None:intergenic | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5_4:55408672-55408691 | Msa0858180:CDS | 20.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5_4:55408927-55408946 | None:intergenic | 20.0% |
| !! | AGTTTCCAATATTCAAGTTT+GGG | + | chr5_4:55406866-55406885 | None:intergenic | 25.0% |
| !! | TAGTTTCCAATATTCAAGTT+TGG | + | chr5_4:55406867-55406886 | None:intergenic | 25.0% |
| !!! | AAAGAAAAGTGAAAAGTGTT+GGG | - | chr5_4:55407161-55407180 | Msa0858180:intron | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5_4:55407211-55407230 | Msa0858180:intron | 25.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | chr5_4:55407392-55407411 | Msa0858180:intron | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5_4:55407501-55407520 | Msa0858180:intron | 25.0% |
| ! | TTAGATGTTGTTGCATTATA+TGG | - | chr5_4:55407905-55407924 | Msa0858180:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5_4:55407982-55408001 | Msa0858180:CDS | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5_4:55407994-55408013 | None:intergenic | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5_4:55408042-55408061 | None:intergenic | 25.0% |
| ! | ACATTATGCTTATGTATGTT+AGG | - | chr5_4:55408286-55408305 | Msa0858180:CDS | 25.0% |
| ! | ATGTATGTTAGGTACAAAAA+AGG | - | chr5_4:55408297-55408316 | Msa0858180:CDS | 25.0% |
| !!! | AAGAGCTAAAAGTATTTTGA+AGG | + | chr5_4:55408538-55408557 | None:intergenic | 25.0% |
| !! | AGTTTCCAATATTCAAGTTT+GGG | + | chr5_4:55406866-55406885 | None:intergenic | 25.0% |
| !! | TAGTTTCCAATATTCAAGTT+TGG | + | chr5_4:55406867-55406886 | None:intergenic | 25.0% |
| !!! | AAAGAAAAGTGAAAAGTGTT+GGG | - | chr5_4:55407161-55407180 | Msa0858180:intron | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5_4:55407211-55407230 | Msa0858180:intron | 25.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | chr5_4:55407392-55407411 | Msa0858180:intron | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5_4:55407501-55407520 | Msa0858180:intron | 25.0% |
| ! | TTAGATGTTGTTGCATTATA+TGG | - | chr5_4:55407905-55407924 | Msa0858180:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5_4:55407982-55408001 | Msa0858180:CDS | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5_4:55407994-55408013 | None:intergenic | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5_4:55408042-55408061 | None:intergenic | 25.0% |
| ! | ACATTATGCTTATGTATGTT+AGG | - | chr5_4:55408286-55408305 | Msa0858180:CDS | 25.0% |
| ! | ATGTATGTTAGGTACAAAAA+AGG | - | chr5_4:55408297-55408316 | Msa0858180:CDS | 25.0% |
| !!! | AAGAGCTAAAAGTATTTTGA+AGG | + | chr5_4:55408538-55408557 | None:intergenic | 25.0% |
| ATCAGAAGGAAGAGAATAAA+GGG | + | chr5_4:55406894-55406913 | None:intergenic | 30.0% | |
| AATCAGAAGGAAGAGAATAA+AGG | + | chr5_4:55406895-55406914 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAACAAGAA+CGG | + | chr5_4:55407012-55407031 | None:intergenic | 30.0% | |
| ! | GAAAGAAAAGTGAAAAGTGT+TGG | - | chr5_4:55407160-55407179 | Msa0858180:intron | 30.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5_4:55407317-55407336 | Msa0858180:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5_4:55407318-55407337 | Msa0858180:intron | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | chr5_4:55407375-55407394 | Msa0858180:intron | 30.0% | |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5_4:55407405-55407424 | Msa0858180:intron | 30.0% |
| ATAACATCAACCATAAGAGT+TGG | + | chr5_4:55407445-55407464 | None:intergenic | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5_4:55407444-55407463 | Msa0858180:intron | 30.0% |
| ACTTCATTCATCAATGATGA+AGG | + | chr5_4:55407535-55407554 | None:intergenic | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5_4:55407541-55407560 | Msa0858180:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5_4:55407615-55407634 | Msa0858180:intron | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5_4:55407648-55407667 | Msa0858180:intron | 30.0% | |
| !!! | ATGGTTTTAAATTGCAGTCA+CGG | - | chr5_4:55407924-55407943 | Msa0858180:intron | 30.0% |
| !!! | AGAACATGGTTTTAATTAGC+AGG | + | chr5_4:55408028-55408047 | None:intergenic | 30.0% |
| TTTGTTCCTTTATGCAATGA+AGG | - | chr5_4:55408095-55408114 | Msa0858180:CDS | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | chr5_4:55408096-55408115 | Msa0858180:CDS | 30.0% | |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | chr5_4:55408168-55408187 | Msa0858180:CDS | 30.0% |
| TCAAAATCTGCGTTGAAATA+TGG | - | chr5_4:55408425-55408444 | Msa0858180:CDS | 30.0% | |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5_4:55408773-55408792 | Msa0858180:CDS | 30.0% |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5_4:55408781-55408800 | Msa0858180:CDS | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5_4:55408782-55408801 | Msa0858180:CDS | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | chr5_4:55408846-55408865 | None:intergenic | 30.0% | |
| ATCAGAAGGAAGAGAATAAA+GGG | + | chr5_4:55406894-55406913 | None:intergenic | 30.0% | |
| AATCAGAAGGAAGAGAATAA+AGG | + | chr5_4:55406895-55406914 | None:intergenic | 30.0% | |
| AAGAAGAACAAGAACAAGAA+CGG | + | chr5_4:55407012-55407031 | None:intergenic | 30.0% | |
| ! | GAAAGAAAAGTGAAAAGTGT+TGG | - | chr5_4:55407160-55407179 | Msa0858180:intron | 30.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5_4:55407317-55407336 | Msa0858180:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5_4:55407318-55407337 | Msa0858180:intron | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | chr5_4:55407375-55407394 | Msa0858180:intron | 30.0% | |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5_4:55407405-55407424 | Msa0858180:intron | 30.0% |
| ATAACATCAACCATAAGAGT+TGG | + | chr5_4:55407445-55407464 | None:intergenic | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5_4:55407444-55407463 | Msa0858180:intron | 30.0% |
| ACTTCATTCATCAATGATGA+AGG | + | chr5_4:55407535-55407554 | None:intergenic | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5_4:55407541-55407560 | Msa0858180:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5_4:55407615-55407634 | Msa0858180:intron | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5_4:55407648-55407667 | Msa0858180:intron | 30.0% | |
| !!! | ATGGTTTTAAATTGCAGTCA+CGG | - | chr5_4:55407924-55407943 | Msa0858180:intron | 30.0% |
| !!! | AGAACATGGTTTTAATTAGC+AGG | + | chr5_4:55408028-55408047 | None:intergenic | 30.0% |
| TTTGTTCCTTTATGCAATGA+AGG | - | chr5_4:55408095-55408114 | Msa0858180:CDS | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | chr5_4:55408096-55408115 | Msa0858180:CDS | 30.0% | |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | chr5_4:55408168-55408187 | Msa0858180:CDS | 30.0% |
| TCAAAATCTGCGTTGAAATA+TGG | - | chr5_4:55408425-55408444 | Msa0858180:CDS | 30.0% | |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5_4:55408773-55408792 | Msa0858180:CDS | 30.0% |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5_4:55408781-55408800 | Msa0858180:CDS | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5_4:55408782-55408801 | Msa0858180:CDS | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | chr5_4:55408846-55408865 | None:intergenic | 30.0% | |
| TCTCTCCCAAACTTGAATAT+TGG | - | chr5_4:55406858-55406877 | Msa0858180:CDS | 35.0% | |
| GGTGATTTCAATGAATCAGA+AGG | + | chr5_4:55406908-55406927 | None:intergenic | 35.0% | |
| TTTCCTTCTCAAGAAACTTG+AGG | - | chr5_4:55406972-55406991 | Msa0858180:CDS | 35.0% | |
| TTCCTTCTCAAGAAACTTGA+GGG | - | chr5_4:55406973-55406992 | Msa0858180:CDS | 35.0% | |
| ! | ATCTTGGAACCTTCTTTTCT+TGG | - | chr5_4:55407079-55407098 | Msa0858180:CDS | 35.0% |
| GGTTGAATACCAAGAAAAGA+AGG | + | chr5_4:55407091-55407110 | None:intergenic | 35.0% | |
| TTGGGATCCCTTTATCTATA+AGG | - | chr5_4:55407179-55407198 | Msa0858180:intron | 35.0% | |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5_4:55407354-55407373 | Msa0858180:intron | 35.0% |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5_4:55407573-55407592 | Msa0858180:intron | 35.0% | |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5_4:55407588-55407607 | Msa0858180:intron | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5_4:55407647-55407666 | Msa0858180:intron | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5_4:55407649-55407668 | Msa0858180:intron | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5_4:55407799-55407818 | None:intergenic | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5_4:55407842-55407861 | Msa0858180:intron | 35.0% | |
| CACGGTTATGCTATAAAATG+CGG | - | chr5_4:55407942-55407961 | Msa0858180:CDS | 35.0% | |
| TGTTCCTTTATGCAATGAAG+GGG | - | chr5_4:55408097-55408116 | Msa0858180:CDS | 35.0% | |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | chr5_4:55408167-55408186 | Msa0858180:CDS | 35.0% |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | chr5_4:55408183-55408202 | None:intergenic | 35.0% |
| GTTGTGATTACACACAATTC+AGG | + | chr5_4:55408324-55408343 | None:intergenic | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | chr5_4:55408496-55408515 | None:intergenic | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | chr5_4:55408497-55408516 | Msa0858180:CDS | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | chr5_4:55408502-55408521 | None:intergenic | 35.0% | |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5_4:55408763-55408782 | Msa0858180:CDS | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5_4:55408865-55408884 | Msa0858180:CDS | 35.0% |
| TCTCTCCCAAACTTGAATAT+TGG | - | chr5_4:55406858-55406877 | Msa0858180:CDS | 35.0% | |
| GGTGATTTCAATGAATCAGA+AGG | + | chr5_4:55406908-55406927 | None:intergenic | 35.0% | |
| TTTCCTTCTCAAGAAACTTG+AGG | - | chr5_4:55406972-55406991 | Msa0858180:CDS | 35.0% | |
| TTCCTTCTCAAGAAACTTGA+GGG | - | chr5_4:55406973-55406992 | Msa0858180:CDS | 35.0% | |
| ! | ATCTTGGAACCTTCTTTTCT+TGG | - | chr5_4:55407079-55407098 | Msa0858180:CDS | 35.0% |
| GGTTGAATACCAAGAAAAGA+AGG | + | chr5_4:55407091-55407110 | None:intergenic | 35.0% | |
| TTGGGATCCCTTTATCTATA+AGG | - | chr5_4:55407179-55407198 | Msa0858180:intron | 35.0% | |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5_4:55407354-55407373 | Msa0858180:intron | 35.0% |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5_4:55407573-55407592 | Msa0858180:intron | 35.0% | |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5_4:55407588-55407607 | Msa0858180:intron | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5_4:55407647-55407666 | Msa0858180:intron | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5_4:55407649-55407668 | Msa0858180:intron | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5_4:55407799-55407818 | None:intergenic | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5_4:55407842-55407861 | Msa0858180:intron | 35.0% | |
| CACGGTTATGCTATAAAATG+CGG | - | chr5_4:55407942-55407961 | Msa0858180:CDS | 35.0% | |
| TGTTCCTTTATGCAATGAAG+GGG | - | chr5_4:55408097-55408116 | Msa0858180:CDS | 35.0% | |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | chr5_4:55408167-55408186 | Msa0858180:CDS | 35.0% |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | chr5_4:55408183-55408202 | None:intergenic | 35.0% |
| GTTGTGATTACACACAATTC+AGG | + | chr5_4:55408324-55408343 | None:intergenic | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | chr5_4:55408496-55408515 | None:intergenic | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | chr5_4:55408497-55408516 | Msa0858180:CDS | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | chr5_4:55408502-55408521 | None:intergenic | 35.0% | |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5_4:55408763-55408782 | Msa0858180:CDS | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5_4:55408865-55408884 | Msa0858180:CDS | 35.0% |
| !!! | CCATTGATTTTGTTCCTCAG+TGG | + | chr5_4:55406950-55406969 | None:intergenic | 40.0% |
| CCACTGAGGAACAAAATCAA+TGG | - | chr5_4:55406947-55406966 | Msa0858180:CDS | 40.0% | |
| TCCTTCTCAAGAAACTTGAG+GGG | - | chr5_4:55406974-55406993 | Msa0858180:CDS | 40.0% | |
| CTCAAAATCTCTTCTCTCTC+TGG | + | chr5_4:55407130-55407149 | None:intergenic | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5_4:55407331-55407350 | Msa0858180:intron | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5_4:55407342-55407361 | Msa0858180:intron | 40.0% |
| CAGTGAAACACCAACTCTTA+TGG | - | chr5_4:55407432-55407451 | Msa0858180:intron | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5_4:55407602-55407621 | Msa0858180:intron | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5_4:55407618-55407637 | Msa0858180:intron | 40.0% | |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5_4:55407713-55407732 | Msa0858180:intron | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5_4:55407714-55407733 | Msa0858180:intron | 40.0% |
| GATTGAAGGGGATCAATATG+AGG | - | chr5_4:55407726-55407745 | Msa0858180:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5_4:55407831-55407850 | Msa0858180:intron | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5_4:55407843-55407862 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5_4:55407841-55407860 | Msa0858180:intron | 40.0% | |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5_4:55408104-55408123 | None:intergenic | 40.0% | |
| GTTAGCCACATCTAATCAGA+CGG | - | chr5_4:55408359-55408378 | Msa0858180:CDS | 40.0% | |
| CTAAACCGTCTGATTAGATG+TGG | + | chr5_4:55408367-55408386 | None:intergenic | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | chr5_4:55408485-55408504 | None:intergenic | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | chr5_4:55408812-55408831 | Msa0858180:CDS | 40.0% | |
| !!! | CCATTGATTTTGTTCCTCAG+TGG | + | chr5_4:55406950-55406969 | None:intergenic | 40.0% |
| CCACTGAGGAACAAAATCAA+TGG | - | chr5_4:55406947-55406966 | Msa0858180:CDS | 40.0% | |
| TCCTTCTCAAGAAACTTGAG+GGG | - | chr5_4:55406974-55406993 | Msa0858180:CDS | 40.0% | |
| CTCAAAATCTCTTCTCTCTC+TGG | + | chr5_4:55407130-55407149 | None:intergenic | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5_4:55407331-55407350 | Msa0858180:intron | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5_4:55407342-55407361 | Msa0858180:intron | 40.0% |
| CAGTGAAACACCAACTCTTA+TGG | - | chr5_4:55407432-55407451 | Msa0858180:intron | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5_4:55407602-55407621 | Msa0858180:intron | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5_4:55407618-55407637 | Msa0858180:intron | 40.0% | |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5_4:55407713-55407732 | Msa0858180:intron | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5_4:55407714-55407733 | Msa0858180:intron | 40.0% |
| GATTGAAGGGGATCAATATG+AGG | - | chr5_4:55407726-55407745 | Msa0858180:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5_4:55407831-55407850 | Msa0858180:intron | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5_4:55407843-55407862 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5_4:55407841-55407860 | Msa0858180:intron | 40.0% | |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5_4:55408104-55408123 | None:intergenic | 40.0% | |
| GTTAGCCACATCTAATCAGA+CGG | - | chr5_4:55408359-55408378 | Msa0858180:CDS | 40.0% | |
| CTAAACCGTCTGATTAGATG+TGG | + | chr5_4:55408367-55408386 | None:intergenic | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | chr5_4:55408485-55408504 | None:intergenic | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | chr5_4:55408812-55408831 | Msa0858180:CDS | 40.0% | |
| ACCCCTCAAGTTTCTTGAGA+AGG | + | chr5_4:55406978-55406997 | None:intergenic | 45.0% | |
| TTCAACCTGAACCACCTAGT+TGG | - | chr5_4:55407104-55407123 | Msa0858180:intron | 45.0% | |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5_4:55407660-55407679 | Msa0858180:intron | 45.0% | |
| !! | GTTTCTGAGTCCTGTTTCTG+TGG | - | chr5_4:55407702-55407721 | Msa0858180:intron | 45.0% |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5_4:55407715-55407734 | None:intergenic | 45.0% | |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5_4:55407712-55407731 | Msa0858180:intron | 45.0% |
| ATGCGGTCGATGTTGTTCAT+AGG | - | chr5_4:55407959-55407978 | Msa0858180:CDS | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | chr5_4:55408347-55408366 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | chr5_4:55408713-55408732 | Msa0858180:CDS | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | chr5_4:55408744-55408763 | None:intergenic | 45.0% | |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5_4:55408873-55408892 | Msa0858180:CDS | 45.0% |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5_4:55408876-55408895 | Msa0858180:CDS | 45.0% |
| ACCCCTCAAGTTTCTTGAGA+AGG | + | chr5_4:55406978-55406997 | None:intergenic | 45.0% | |
| TTCAACCTGAACCACCTAGT+TGG | - | chr5_4:55407104-55407123 | Msa0858180:intron | 45.0% | |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5_4:55407660-55407679 | Msa0858180:intron | 45.0% | |
| !! | GTTTCTGAGTCCTGTTTCTG+TGG | - | chr5_4:55407702-55407721 | Msa0858180:intron | 45.0% |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5_4:55407715-55407734 | None:intergenic | 45.0% | |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5_4:55407712-55407731 | Msa0858180:intron | 45.0% |
| ATGCGGTCGATGTTGTTCAT+AGG | - | chr5_4:55407959-55407978 | Msa0858180:CDS | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | chr5_4:55408347-55408366 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | chr5_4:55408713-55408732 | Msa0858180:CDS | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | chr5_4:55408744-55408763 | None:intergenic | 45.0% | |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5_4:55408873-55408892 | Msa0858180:CDS | 45.0% |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5_4:55408876-55408895 | Msa0858180:CDS | 45.0% |
| GGCAGAGAAGAAACTGAACG+TGG | + | chr5_4:55406929-55406948 | None:intergenic | 50.0% | |
| CAGTTTCTTCTCTGCCACTG+AGG | - | chr5_4:55406933-55406952 | Msa0858180:CDS | 50.0% | |
| TCTTCTCTCTCTGGCCAACT+AGG | + | chr5_4:55407121-55407140 | None:intergenic | 50.0% | |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5_4:55407654-55407673 | Msa0858180:intron | 50.0% | |
| GGCTAACTATGCGCAATCAC+GGG | + | chr5_4:55408346-55408365 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5_4:55408825-55408844 | Msa0858180:CDS | 50.0% |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5_4:55408884-55408903 | None:intergenic | 50.0% | |
| GGCAGAGAAGAAACTGAACG+TGG | + | chr5_4:55406929-55406948 | None:intergenic | 50.0% | |
| CAGTTTCTTCTCTGCCACTG+AGG | - | chr5_4:55406933-55406952 | Msa0858180:CDS | 50.0% | |
| TCTTCTCTCTCTGGCCAACT+AGG | + | chr5_4:55407121-55407140 | None:intergenic | 50.0% | |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5_4:55407654-55407673 | Msa0858180:intron | 50.0% | |
| GGCTAACTATGCGCAATCAC+GGG | + | chr5_4:55408346-55408365 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5_4:55408825-55408844 | Msa0858180:CDS | 50.0% |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5_4:55408884-55408903 | None:intergenic | 50.0% | |
| TCTGGCCAACTAGGTGGTTC+AGG | + | chr5_4:55407112-55407131 | None:intergenic | 55.0% | |
| TCTCTCTCTGGCCAACTAGG+TGG | + | chr5_4:55407118-55407137 | None:intergenic | 55.0% | |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5_4:55408725-55408744 | Msa0858180:CDS | 55.0% | |
| TCTGGCCAACTAGGTGGTTC+AGG | + | chr5_4:55407112-55407131 | None:intergenic | 55.0% | |
| TCTCTCTCTGGCCAACTAGG+TGG | + | chr5_4:55407118-55407137 | None:intergenic | 55.0% | |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5_4:55408725-55408744 | Msa0858180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 55406845 | 55408956 | 55406845 | ID=Msa0858180;Name=Msa0858180 |
| chr5_4 | mRNA | 55406845 | 55408956 | 55406845 | ID=Msa0858180-mRNA-1;Parent=Msa0858180;Name=Msa0858180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|424 |
| chr5_4 | exon | 55407938 | 55408956 | 55407938 | ID=Msa0858180-mRNA-1:exon:16999;Parent=Msa0858180-mRNA-1 |
| chr5_4 | exon | 55406845 | 55407100 | 55406845 | ID=Msa0858180-mRNA-1:exon:16998;Parent=Msa0858180-mRNA-1 |
| chr5_4 | CDS | 55407938 | 55408956 | 55407938 | ID=Msa0858180-mRNA-1:cds;Parent=Msa0858180-mRNA-1 |
| chr5_4 | CDS | 55406845 | 55407100 | 55406845 | ID=Msa0858180-mRNA-1:cds;Parent=Msa0858180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
