Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956410 | XP_013443308.1 | 96.269 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 2.34e-91 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956410 | A0A072TKA3 | 96.269 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 1.12e-91 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0772480 | Msa0956410 | 0.813292 | 2.755820e-51 | -8.615850e-47 |
| Msa0784860 | Msa0956410 | 0.862337 | 5.444906e-64 | -8.615850e-47 |
| Msa0798440 | Msa0956410 | 0.813436 | 2.562318e-51 | -8.615850e-47 |
| Msa0817730 | Msa0956410 | 0.839297 | 1.723584e-57 | -8.615850e-47 |
| Msa0379410 | Msa0956410 | 0.801918 | 7.176784e-49 | -8.615850e-47 |
| Msa0256330 | Msa0956410 | 0.807342 | 5.296106e-50 | -8.615850e-47 |
| Msa0345350 | Msa0956410 | 0.810572 | 1.078474e-50 | -8.615850e-47 |
| Msa0534900 | Msa0956410 | 0.803181 | 3.940926e-49 | -8.615850e-47 |
| Msa0536650 | Msa0956410 | 0.803144 | 4.010577e-49 | -8.615850e-47 |
| Msa0592720 | Msa0956410 | 0.805845 | 1.096514e-49 | -8.615850e-47 |
| Msa0858180 | Msa0956410 | 0.838186 | 3.340406e-57 | -8.615850e-47 |
| Msa0870150 | Msa0956410 | 0.810001 | 1.432105e-50 | -8.615850e-47 |
| Msa0891510 | Msa0956410 | 0.846793 | 1.737351e-59 | -8.615850e-47 |
| Msa0919020 | Msa0956410 | 0.872672 | 2.655964e-67 | -8.615850e-47 |
| Msa0956410 | Msa1234730 | 0.811221 | 7.801361e-51 | -8.615850e-47 |
| Msa0956410 | Msa1302100 | 0.824403 | 8.224371e-54 | -8.615850e-47 |
| Msa0956410 | Msa1315110 | 0.813385 | 2.629674e-51 | -8.615850e-47 |
| Msa0956410 | Msa1465960 | 0.803884 | 2.817078e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956410 | MtrunA17_Chr6g0472331 | 96.269 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 2.16e-95 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGTGTTCTTCTCATTGT+TGG | 0.219593 | 6_3:-63537196 | None:intergenic |
| TTTGTCAAAGTCGCCATTAT+AGG | 0.294994 | 6_3:-63537781 | None:intergenic |
| CACAGCTATGGATTCTTCTA+TGG | 0.298350 | 6_3:+63534180 | None:intergenic |
| AAGAACGACAACCTTTGTTT+TGG | 0.298817 | 6_3:-63534300 | None:intergenic |
| TTGTCAAAGTCGCCATTATA+GGG | 0.344757 | 6_3:-63537780 | None:intergenic |
| CGTAAACTACCTCAATACTA+TGG | 0.373289 | 6_3:+63534252 | Msa0956410:CDS |
| AAAGTAAAACCACGTCGTTT+TGG | 0.390585 | 6_3:+63534215 | Msa0956410:CDS |
| CATGGTGAGGTTTCAAATCA+AGG | 0.391023 | 6_3:-63534390 | None:intergenic |
| GCCGTTCAATTCAAATGATC+AGG | 0.427383 | 6_3:+63537231 | Msa0956410:CDS |
| CTTCTTTGCAACAGATTCGA+TGG | 0.428766 | 6_3:+63537171 | Msa0956410:intron |
| AAAGGTGTAGCGCCCTATAA+TGG | 0.435667 | 6_3:+63537768 | Msa0956410:CDS |
| ATCTTATACCTGAAGGTGTA+TGG | 0.459090 | 6_3:-63534432 | None:intergenic |
| ATCACAGCCGTCAAATTCTT+CGG | 0.468648 | 6_3:+63534332 | Msa0956410:CDS |
| AGAAAACACCATACACCTTC+AGG | 0.480517 | 6_3:+63534424 | Msa0956410:CDS |
| AAGGGTTGATTCAGAGCTAT+CGG | 0.489516 | 6_3:-63534371 | None:intergenic |
| GAAGAATTTGACGGCTGTGA+TGG | 0.489726 | 6_3:-63534330 | None:intergenic |
| TTCTTTGCAACAGATTCGAT+GGG | 0.490944 | 6_3:+63537172 | Msa0956410:intron |
| AAGAATTTGACGGCTGTGAT+GGG | 0.496731 | 6_3:-63534329 | None:intergenic |
| TATAATGGCGACTTTGACAA+AGG | 0.504926 | 6_3:+63537783 | Msa0956410:CDS |
| ACCTGATCATTTGAATTGAA+CGG | 0.508297 | 6_3:-63537232 | None:intergenic |
| GATCGAGCCGAAGAATTTGA+CGG | 0.534480 | 6_3:-63534339 | None:intergenic |
| ATGGTGAGGTTTCAAATCAA+GGG | 0.541262 | 6_3:-63534389 | None:intergenic |
| AGGGTTGATTCAGAGCTATC+GGG | 0.541321 | 6_3:-63534370 | None:intergenic |
| CGTACAATGTTCCAAAACAA+AGG | 0.556727 | 6_3:+63534289 | Msa0956410:CDS |
| CTGGTGCGGCTTCCATGGTG+AGG | 0.559379 | 6_3:-63534403 | None:intergenic |
| AAGAAGCTTCCATAGTATTG+AGG | 0.585611 | 6_3:-63534261 | None:intergenic |
| CAAGTAGAAAATGAAAGCAA+AGG | 0.600178 | 6_3:+63537750 | Msa0956410:CDS |
| CTTGATTTGAAACCTCACCA+TGG | 0.689590 | 6_3:+63534391 | Msa0956410:CDS |
| TTCATCTGTCCAAAACGACG+TGG | 0.692201 | 6_3:-63534224 | None:intergenic |
| GTCCAACAATGAGAAGAACA+CGG | 0.724140 | 6_3:+63537194 | Msa0956410:CDS |
| CAACAATGAGAAGAACACGG+AGG | 0.824433 | 6_3:+63537197 | Msa0956410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr6_3:63534905-63534924 | Msa0956410:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr6_3:63534904-63534923 | Msa0956410:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr6_3:63534905-63534924 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr6_3:63534904-63534923 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr6_3:63534904-63534923 | Msa0956410:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr6_3:63534904-63534923 | None:intergenic | 0.0% |
| !!! | GATATTTATATTTTTTTAGA+TGG | + | chr6_3:63536145-63536164 | Msa0956410:intron | 10.0% |
| !!! | TCGTATATAATTATATTTTT+TGG | + | chr6_3:63536426-63536445 | Msa0956410:intron | 10.0% |
| !!! | TTTTTTTTAAAATAATGTAG+TGG | - | chr6_3:63536726-63536745 | None:intergenic | 10.0% |
| !! | ATATAATAGACATTAAAAAA+AGG | - | chr6_3:63537054-63537073 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATGTCTATTATA+TGG | + | chr6_3:63537053-63537072 | Msa0956410:intron | 10.0% |
| !!! | TTTTTTAATGTCTATTATAT+GGG | + | chr6_3:63537054-63537073 | Msa0956410:intron | 10.0% |
| !!! | AATCTAAAATTAGATATTTT+TGG | + | chr6_3:63537623-63537642 | Msa0956410:intron | 10.0% |
| !!! | TTTATCGATGTTTTTTTTTA+AGG | - | chr6_3:63534556-63534575 | None:intergenic | 15.0% |
| !! | AGAGAAAAATAATACAATAA+GGG | - | chr6_3:63535372-63535391 | None:intergenic | 15.0% |
| !! | TAGAGAAAAATAATACAATA+AGG | - | chr6_3:63535373-63535392 | None:intergenic | 15.0% |
| !! | AATAACAAAACAAAAACTAA+AGG | - | chr6_3:63535493-63535512 | None:intergenic | 15.0% |
| !! | ATCATTAGATTAAAATTAGA+TGG | - | chr6_3:63536033-63536052 | None:intergenic | 15.0% |
| !! | ATTTCGTTATTAAAGTTTAT+TGG | + | chr6_3:63536241-63536260 | Msa0956410:intron | 15.0% |
| !! | TTTCGTTATTAAAGTTTATT+GGG | + | chr6_3:63536242-63536261 | Msa0956410:intron | 15.0% |
| !! | TATAATGGTAAACATAAAAA+AGG | + | chr6_3:63536519-63536538 | Msa0956410:intron | 15.0% |
| !! | TATTATTACATCTACTAATA+AGG | + | chr6_3:63536807-63536826 | Msa0956410:intron | 15.0% |
| !!! | AATCTTTTTTTTTTTTTTGG+TGG | - | chr6_3:63536924-63536943 | None:intergenic | 15.0% |
| !!! | TTTTTAATGTCTATTATATG+GGG | + | chr6_3:63537055-63537074 | Msa0956410:intron | 15.0% |
| !! | ACATTTAAGAAGAATAAATA+GGG | - | chr6_3:63537429-63537448 | None:intergenic | 15.0% |
| !!! | TGGTTTGTGTATAAAATATA+AGG | + | chr6_3:63534699-63534718 | Msa0956410:intron | 20.0% |
| !! | AGGTTAAAAAAAATTAGATG+AGG | + | chr6_3:63534719-63534738 | Msa0956410:intron | 20.0% |
| !! | TAAAATATCCATTCTCATAT+AGG | - | chr6_3:63535271-63535290 | None:intergenic | 20.0% |
| !!! | ATGGATATTTTATATGAGAA+TGG | + | chr6_3:63535279-63535298 | Msa0956410:intron | 20.0% |
| !! | ATCATTAGATTAAAGTTAGA+TGG | + | chr6_3:63535317-63535336 | Msa0956410:intron | 20.0% |
| !! | AAAAATGAAAACAACAAAAG+AGG | + | chr6_3:63535582-63535601 | Msa0956410:intron | 20.0% |
| !!! | ATGGTTATTTTATATGAGAA+TGG | - | chr6_3:63536071-63536090 | None:intergenic | 20.0% |
| !! | TATAAAATAACCATTCTCAT+AGG | + | chr6_3:63536077-63536096 | Msa0956410:intron | 20.0% |
| !! | TAATAAACTCATACTCTATT+AGG | + | chr6_3:63536553-63536572 | Msa0956410:intron | 20.0% |
| !! | TTAGCAGTTATGTTAATTTA+TGG | + | chr6_3:63536621-63536640 | Msa0956410:intron | 20.0% |
| !! | TAGCAGTTATGTTAATTTAT+GGG | + | chr6_3:63536622-63536641 | Msa0956410:intron | 20.0% |
| !! | ATAAAACGTTTATACATTGA+CGG | - | chr6_3:63536770-63536789 | None:intergenic | 20.0% |
| !! | TGTAATTAGTTAAAAACACT+TGG | - | chr6_3:63536843-63536862 | None:intergenic | 20.0% |
| !! | AATGAAGAAAAATTCAAGTA+AGG | + | chr6_3:63536959-63536978 | Msa0956410:intron | 20.0% |
| !!! | TTTTAATGTCTATTATATGG+GGG | + | chr6_3:63537056-63537075 | Msa0956410:intron | 20.0% |
| !! | AACATTTATTGTCTTTAGTT+AGG | + | chr6_3:63537088-63537107 | Msa0956410:intron | 20.0% |
| !! | ACATTTATTGTCTTTAGTTA+GGG | + | chr6_3:63537089-63537108 | Msa0956410:intron | 20.0% |
| !! | AAAAAACTATACAATTGAGT+TGG | - | chr6_3:63537315-63537334 | None:intergenic | 20.0% |
| !! | TAATGAAAAGTGAATTCATT+TGG | + | chr6_3:63537337-63537356 | Msa0956410:intron | 20.0% |
| !! | CACATTTAAGAAGAATAAAT+AGG | - | chr6_3:63537430-63537449 | None:intergenic | 20.0% |
| !! | TTTAAGTATATTAGTTCAGT+TGG | + | chr6_3:63537457-63537476 | Msa0956410:intron | 20.0% |
| !!! | TTCTATAGTCTTTTTTTTTG+CGG | - | chr6_3:63537532-63537551 | None:intergenic | 20.0% |
| ! | AAAAACAATCTTATACCTGA+AGG | - | chr6_3:63534442-63534461 | None:intergenic | 25.0% |
| ! | GATGTTGTTAAGGTATAATT+AGG | + | chr6_3:63534741-63534760 | Msa0956410:intron | 25.0% |
| ! | TAACCTAATTGCTCAAAATT+AGG | + | chr6_3:63534783-63534802 | Msa0956410:intron | 25.0% |
| !! | TAACCTAATTTTGAGCAATT+AGG | - | chr6_3:63534789-63534808 | None:intergenic | 25.0% |
| ! | ATGAAGATGAACAGATAAAT+GGG | - | chr6_3:63535397-63535416 | None:intergenic | 25.0% |
| ! | TAACTAGATAAATTGGTAGA+TGG | - | chr6_3:63535468-63535487 | None:intergenic | 25.0% |
| !! | AAAGGCATAACTAGATAAAT+TGG | - | chr6_3:63535475-63535494 | None:intergenic | 25.0% |
| !!! | GTCACATTTTAATAACACAT+GGG | - | chr6_3:63535997-63536016 | None:intergenic | 25.0% |
| !!! | AGTCACATTTTAATAACACA+TGG | - | chr6_3:63535998-63536017 | None:intergenic | 25.0% |
| ! | AAATTCAACATGAACATGAA+GGG | + | chr6_3:63536207-63536226 | Msa0956410:intron | 25.0% |
| ! | TTACGAAGATATTATGTTAG+TGG | - | chr6_3:63536361-63536380 | None:intergenic | 25.0% |
| ! | ATATCGAAAGATGTTTAAGA+AGG | - | chr6_3:63536663-63536682 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTTTTTTGGTGG+TGG | - | chr6_3:63536921-63536940 | None:intergenic | 25.0% |
| ! | GAAGAATAAATAGGGAATTT+AGG | - | chr6_3:63537421-63537440 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | chr6_3:63537484-63537503 | Msa0956410:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+CGG | + | chr6_3:63537489-63537508 | Msa0956410:intron | 25.0% |
| !!! | ATTTTTGGTGCTTTTCTTTT+TGG | + | chr6_3:63537638-63537657 | Msa0956410:intron | 25.0% |
| !!! | TTTTGGTGATAGGATATTTT+TGG | + | chr6_3:63537655-63537674 | Msa0956410:intron | 25.0% |
| GACAATGCATTATATATGCA+AGG | + | chr6_3:63534642-63534661 | Msa0956410:intron | 30.0% | |
| !! | TTATACACAAACCACTTTTG+AGG | - | chr6_3:63534693-63534712 | None:intergenic | 30.0% |
| ATTAGATGAGGATGTTGTTA+AGG | + | chr6_3:63534731-63534750 | Msa0956410:intron | 30.0% | |
| ! | ATAGAAGACACATTTTGTGA+AGG | + | chr6_3:63534988-63535007 | Msa0956410:intron | 30.0% |
| !!! | ACACCAACTACTTTTTATGA+AGG | + | chr6_3:63535050-63535069 | Msa0956410:intron | 30.0% |
| ACACCTTCATAAAAAGTAGT+TGG | - | chr6_3:63535056-63535075 | None:intergenic | 30.0% | |
| ATACAATAAGGGAATGCATA+TGG | - | chr6_3:63535361-63535380 | None:intergenic | 30.0% | |
| GATGAAGATGAACAGATAAA+TGG | - | chr6_3:63535398-63535417 | None:intergenic | 30.0% | |
| GAAATTCAACATGAACATGA+AGG | + | chr6_3:63536206-63536225 | Msa0956410:intron | 30.0% | |
| AATGTTCTATGTGGATAGTT+CGG | - | chr6_3:63536701-63536720 | None:intergenic | 30.0% | |
| CTCGAAAAATAAAGCATAGT+TGG | - | chr6_3:63537115-63537134 | None:intergenic | 30.0% | |
| !!! | CTATGCTTTATTTTTCGAGA+TGG | + | chr6_3:63537116-63537135 | Msa0956410:intron | 30.0% |
| !!! | TTATTGACCACCGTATTTTT+TGG | + | chr6_3:63537145-63537164 | Msa0956410:intron | 30.0% |
| !!! | TATTGACCACCGTATTTTTT+GGG | + | chr6_3:63537146-63537165 | Msa0956410:intron | 30.0% |
| AAAGAAGAGCCCAAAAAATA+CGG | - | chr6_3:63537158-63537177 | None:intergenic | 30.0% | |
| ACCTGATCATTTGAATTGAA+CGG | - | chr6_3:63537235-63537254 | None:intergenic | 30.0% | |
| TTATCACAAGACAAGAAGAA+AGG | - | chr6_3:63537285-63537304 | None:intergenic | 30.0% | |
| ! | GTATATTAGTTCAGTTGGTA+AGG | + | chr6_3:63537462-63537481 | Msa0956410:intron | 30.0% |
| GCATAATATATGTAAGGTTC+GGG | + | chr6_3:63537490-63537509 | Msa0956410:intron | 30.0% | |
| CATAATATATGTAAGGTTCG+GGG | + | chr6_3:63537491-63537510 | Msa0956410:intron | 30.0% | |
| !!! | TATAGTCTTTTTTTTTGCGG+TGG | - | chr6_3:63537529-63537548 | None:intergenic | 30.0% |
| !!! | GATATTTTTGGTGTTTGTAG+AGG | + | chr6_3:63537667-63537686 | Msa0956410:intron | 30.0% |
| TGTAGAGGAGATAAATATAC+TGG | + | chr6_3:63537682-63537701 | Msa0956410:intron | 30.0% | |
| TGGTCATAAAAGTGACTAAT+GGG | + | chr6_3:63537702-63537721 | Msa0956410:intron | 30.0% | |
| AATGGGTGATTTATATGTGT+AGG | + | chr6_3:63537719-63537738 | Msa0956410:intron | 30.0% | |
| ! | TGCTTTCATTTTCTACTTGT+GGG | - | chr6_3:63537749-63537768 | None:intergenic | 30.0% |
| ! | TTGCTTTCATTTTCTACTTG+TGG | - | chr6_3:63537750-63537769 | None:intergenic | 30.0% |
| CAAGTAGAAAATGAAAGCAA+AGG | + | chr6_3:63537750-63537769 | Msa0956410:CDS | 30.0% | |
| ! | AAAGTAAAACCACGTCGTTT+TGG | + | chr6_3:63534215-63534234 | Msa0956410:CDS | 35.0% |
| CGTAAACTACCTCAATACTA+TGG | + | chr6_3:63534252-63534271 | Msa0956410:CDS | 35.0% | |
| AAGAAGCTTCCATAGTATTG+AGG | - | chr6_3:63534264-63534283 | None:intergenic | 35.0% | |
| CGTACAATGTTCCAAAACAA+AGG | + | chr6_3:63534289-63534308 | Msa0956410:CDS | 35.0% | |
| !! | AAGAACGACAACCTTTGTTT+TGG | - | chr6_3:63534303-63534322 | None:intergenic | 35.0% |
| ATGGTGAGGTTTCAAATCAA+GGG | - | chr6_3:63534392-63534411 | None:intergenic | 35.0% | |
| ! | ATCTTATACCTGAAGGTGTA+TGG | - | chr6_3:63534435-63534454 | None:intergenic | 35.0% |
| ACACAAACCTCTAGTTAAGT+CGG | - | chr6_3:63534588-63534607 | None:intergenic | 35.0% | |
| TGCATTATATATGCAAGGTC+CGG | + | chr6_3:63534647-63534666 | Msa0956410:intron | 35.0% | |
| !! | TTGTTATGCAAAGCGTTGAA+AGG | + | chr6_3:63534824-63534843 | Msa0956410:intron | 35.0% |
| ! | AGCGTTGAAAGGATTATTAC+TGG | + | chr6_3:63534835-63534854 | Msa0956410:intron | 35.0% |
| GTTGAAAGGATTATTACTGG+CGG | + | chr6_3:63534838-63534857 | Msa0956410:intron | 35.0% | |
| AAAGTGAAAATCACACCTTG+AGG | + | chr6_3:63535099-63535118 | Msa0956410:intron | 35.0% | |
| ! | TTTTATCAAGTCACACCTCA+AGG | - | chr6_3:63535117-63535136 | None:intergenic | 35.0% |
| !!! | CACCACACTACTTTTTATGA+AGG | + | chr6_3:63535139-63535158 | Msa0956410:intron | 35.0% |
| CACCTTCATAAAAAGTAGTG+TGG | - | chr6_3:63535144-63535163 | None:intergenic | 35.0% | |
| GGACATATCCTATATGAGAA+TGG | + | chr6_3:63535260-63535279 | Msa0956410:intron | 35.0% | |
| ATGGTAGTCTTCTATTCAGA+TGG | - | chr6_3:63535449-63535468 | None:intergenic | 35.0% | |
| ACGTTTCACATTCTTCTGAA+TGG | - | chr6_3:63535528-63535547 | None:intergenic | 35.0% | |
| GGTGAATGTGTTTATGAGAA+TGG | + | chr6_3:63535956-63535975 | Msa0956410:intron | 35.0% | |
| TAGGACATATCCTATGAGAA+TGG | - | chr6_3:63536090-63536109 | None:intergenic | 35.0% | |
| TAAGGAAGCAATGACTTATG+AGG | + | chr6_3:63536977-63536996 | Msa0956410:intron | 35.0% | |
| TTCTTTGCAACAGATTCGAT+GGG | + | chr6_3:63537172-63537191 | Msa0956410:intron | 35.0% | |
| !! | GTGCTTTTCTTTTTGGTGAT+AGG | + | chr6_3:63537645-63537664 | Msa0956410:intron | 35.0% |
| CTGGTCATAAAAGTGACTAA+TGG | + | chr6_3:63537701-63537720 | Msa0956410:intron | 35.0% | |
| TTGTCAAAGTCGCCATTATA+GGG | - | chr6_3:63537783-63537802 | None:intergenic | 35.0% | |
| TTTGTCAAAGTCGCCATTAT+AGG | - | chr6_3:63537784-63537803 | None:intergenic | 35.0% | |
| TATAATGGCGACTTTGACAA+AGG | + | chr6_3:63537783-63537802 | Msa0956410:CDS | 35.0% | |
| !! | AACGACGTGGTTTTACTTTC+TGG | - | chr6_3:63534214-63534233 | None:intergenic | 40.0% |
| AAGAATTTGACGGCTGTGAT+GGG | - | chr6_3:63534332-63534351 | None:intergenic | 40.0% | |
| ATCACAGCCGTCAAATTCTT+CGG | + | chr6_3:63534332-63534351 | Msa0956410:CDS | 40.0% | |
| ! | AAGGGTTGATTCAGAGCTAT+CGG | - | chr6_3:63534374-63534393 | None:intergenic | 40.0% |
| CATGGTGAGGTTTCAAATCA+AGG | - | chr6_3:63534393-63534412 | None:intergenic | 40.0% | |
| ! | CTTGATTTGAAACCTCACCA+TGG | + | chr6_3:63534391-63534410 | Msa0956410:CDS | 40.0% |
| !! | TGAAGGTGTATGGTGTTTTC+TGG | - | chr6_3:63534425-63534444 | None:intergenic | 40.0% |
| AGAAAACACCATACACCTTC+AGG | + | chr6_3:63534424-63534443 | Msa0956410:CDS | 40.0% | |
| TGAGCTTAGCTCAACTGATA+AGG | + | chr6_3:63534620-63534639 | Msa0956410:intron | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | + | chr6_3:63534648-63534667 | Msa0956410:intron | 40.0% | |
| CATTATATATGCAAGGTCCG+GGG | + | chr6_3:63534649-63534668 | Msa0956410:intron | 40.0% | |
| !!! | ACAAACCACTTTTGAGGTAG+TGG | - | chr6_3:63534687-63534706 | None:intergenic | 40.0% |
| ACTACCTAAACCAAACAGCA+CGG | + | chr6_3:63534867-63534886 | Msa0956410:intron | 40.0% | |
| !! | ATTACCGTGCTGTTTGGTTT+AGG | - | chr6_3:63534874-63534893 | None:intergenic | 40.0% |
| ! | CATTCTATTACCGTGCTGTT+TGG | - | chr6_3:63534880-63534899 | None:intergenic | 40.0% |
| TTCTATTCAGATGGCAGAGA+TGG | - | chr6_3:63535440-63535459 | None:intergenic | 40.0% | |
| AGAGGACAAAGATCGTGAAA+CGG | + | chr6_3:63535600-63535619 | Msa0956410:intron | 40.0% | |
| AAGATCTCAGATAAGTGAGG+CGG | - | chr6_3:63535663-63535682 | None:intergenic | 40.0% | |
| TCGTTCAAACACCCAAAATC+CGG | - | chr6_3:63535711-63535730 | None:intergenic | 40.0% | |
| GAGAGAGTGGGTAAGATAAA+CGG | + | chr6_3:63535811-63535830 | Msa0956410:intron | 40.0% | |
| ! | GTAGTGGAGAATGTTCTATG+TGG | - | chr6_3:63536710-63536729 | None:intergenic | 40.0% |
| AAGCAATGACTTATGAGGAG+AGG | + | chr6_3:63536982-63537001 | Msa0956410:intron | 40.0% | |
| AGCAATGACTTATGAGGAGA+GGG | + | chr6_3:63536983-63537002 | Msa0956410:intron | 40.0% | |
| CTTCTTTGCAACAGATTCGA+TGG | + | chr6_3:63537171-63537190 | Msa0956410:intron | 40.0% | |
| GTCCAACAATGAGAAGAACA+CGG | + | chr6_3:63537194-63537213 | Msa0956410:CDS | 40.0% | |
| GCCGTTCAATTCAAATGATC+AGG | + | chr6_3:63537231-63537250 | Msa0956410:CDS | 40.0% | |
| ! | ATCAGGTAAGCTTTGTGTGT+TGG | + | chr6_3:63537248-63537267 | Msa0956410:intron | 40.0% |
| !!! | TCTTTTTTTTTGCGGTGGTC+GGG | - | chr6_3:63537524-63537543 | None:intergenic | 40.0% |
| !!! | GTCTTTTTTTTTGCGGTGGT+CGG | - | chr6_3:63537525-63537544 | None:intergenic | 40.0% |
| GGGTGATTTATATGTGTAGG+TGG | + | chr6_3:63537722-63537741 | Msa0956410:intron | 40.0% | |
| TTCATCTGTCCAAAACGACG+TGG | - | chr6_3:63534227-63534246 | None:intergenic | 45.0% | |
| GAAGAATTTGACGGCTGTGA+TGG | - | chr6_3:63534333-63534352 | None:intergenic | 45.0% | |
| GATCGAGCCGAAGAATTTGA+CGG | - | chr6_3:63534342-63534361 | None:intergenic | 45.0% | |
| ! | AGGGTTGATTCAGAGCTATC+GGG | - | chr6_3:63534373-63534392 | None:intergenic | 45.0% |
| !! | GTGTATGGTGTTTTCTGGTG+CGG | - | chr6_3:63534420-63534439 | None:intergenic | 45.0% |
| ATCTCCTCCGACTTAACTAG+AGG | + | chr6_3:63534578-63534597 | Msa0956410:intron | 45.0% | |
| CAAACCTCTAGTTAAGTCGG+AGG | - | chr6_3:63534585-63534604 | None:intergenic | 45.0% | |
| GAAAGGATTATTACTGGCGG+TGG | + | chr6_3:63534841-63534860 | Msa0956410:intron | 45.0% | |
| GGCAAGATCTCAGATAAGTG+AGG | - | chr6_3:63535666-63535685 | None:intergenic | 45.0% | |
| AAACACCCAAAATCCGGTGA+CGG | - | chr6_3:63535705-63535724 | None:intergenic | 45.0% | |
| AACGAGTGAAAGAGACAGCA+AGG | + | chr6_3:63535726-63535745 | Msa0956410:intron | 45.0% | |
| ACGAGTGAAAGAGACAGCAA+GGG | + | chr6_3:63535727-63535746 | Msa0956410:intron | 45.0% | |
| AGAGTGGGTAAGATAAACGG+CGG | + | chr6_3:63535814-63535833 | Msa0956410:intron | 45.0% | |
| TGTAGGGAAGAAGAAGGGTA+TGG | + | chr6_3:63535935-63535954 | Msa0956410:intron | 45.0% | |
| GAAGAGCCCAAAAAATACGG+TGG | - | chr6_3:63537155-63537174 | None:intergenic | 45.0% | |
| CTCCGTGTTCTTCTCATTGT+TGG | - | chr6_3:63537199-63537218 | None:intergenic | 45.0% | |
| CAACAATGAGAAGAACACGG+AGG | + | chr6_3:63537197-63537216 | Msa0956410:CDS | 45.0% | |
| ! | AAAGGTGTAGCGCCCTATAA+TGG | + | chr6_3:63537768-63537787 | Msa0956410:CDS | 45.0% |
| !! | TTAATAATAATTTGATATAA+TGG | + | chr6_3:63536504-63536523 | Msa0956410:intron | 5.0% |
| !!! | TTAAATTACTTATTTATTTT+AGG | + | chr6_3:63536583-63536602 | Msa0956410:intron | 5.0% |
| !!! | TAAATTACTTATTTATTTTA+GGG | + | chr6_3:63536584-63536603 | Msa0956410:intron | 5.0% |
| !!! | TATAATCTTTTTTTTTTTTT+TGG | - | chr6_3:63536927-63536946 | None:intergenic | 5.0% |
| !!! | CACTTTTGAGGTAGTGGCTG+GGG | - | chr6_3:63534681-63534700 | None:intergenic | 50.0% |
| !!! | CCACTTTTGAGGTAGTGGCT+GGG | - | chr6_3:63534682-63534701 | None:intergenic | 50.0% |
| !!! | ACCACTTTTGAGGTAGTGGC+TGG | - | chr6_3:63534683-63534702 | None:intergenic | 50.0% |
| TCAGAACAAGAGAGGTGAGG+CGG | - | chr6_3:63535637-63535656 | None:intergenic | 50.0% | |
| TGGTCAGAACAAGAGAGGTG+AGG | - | chr6_3:63535640-63535659 | None:intergenic | 50.0% | |
| ATCTCAGATAAGTGAGGCGG+TGG | - | chr6_3:63535660-63535679 | None:intergenic | 50.0% | |
| ! | GGTGACGGCAACAACAACAA+CGG | - | chr6_3:63535690-63535709 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGTTGCCGTCAC+CGG | + | chr6_3:63535689-63535708 | Msa0956410:intron | 50.0% |
| ! | TTGTTGCCGTCACCGGATTT+TGG | + | chr6_3:63535696-63535715 | Msa0956410:intron | 50.0% |
| ! | TGTTGCCGTCACCGGATTTT+GGG | + | chr6_3:63535697-63535716 | Msa0956410:intron | 50.0% |
| TAGATAACAGCGAGACGACG+AGG | + | chr6_3:63535779-63535798 | Msa0956410:intron | 50.0% | |
| AGGTGCGATCTTGAGAGAGT+GGG | + | chr6_3:63535799-63535818 | Msa0956410:intron | 50.0% | |
| GCGGGATGTAGGGAGATAAA+CGG | + | chr6_3:63535870-63535889 | Msa0956410:intron | 50.0% | |
| GGATGTAGGGAGATAAACGG+CGG | + | chr6_3:63535873-63535892 | Msa0956410:intron | 50.0% | |
| CGGGATGTAGGGAAGAAGAA+GGG | + | chr6_3:63535930-63535949 | Msa0956410:intron | 50.0% | |
| !! | GTTTTCTGGTGCGGCTTCCA+TGG | - | chr6_3:63534411-63534430 | None:intergenic | 55.0% |
| CCCAGCCACTACCTCAAAAG+TGG | + | chr6_3:63534679-63534698 | Msa0956410:intron | 55.0% | |
| GACGGCAACAACAACAACGG+CGG | - | chr6_3:63535687-63535706 | None:intergenic | 55.0% | |
| GAGGTGCGATCTTGAGAGAG+TGG | + | chr6_3:63535798-63535817 | Msa0956410:intron | 55.0% | |
| GGTAAGATAAACGGCGGCGA+CGG | + | chr6_3:63535820-63535839 | Msa0956410:intron | 55.0% | |
| AGACGCGGTGGAAAACTGAG+AGG | + | chr6_3:63535845-63535864 | Msa0956410:intron | 55.0% | |
| GGTGGAAAACTGAGAGGCAG+CGG | + | chr6_3:63535851-63535870 | Msa0956410:intron | 55.0% | |
| GTGGAAAACTGAGAGGCAGC+GGG | + | chr6_3:63535852-63535871 | Msa0956410:intron | 55.0% | |
| CGGTTAGACGCGGTGGAAAA+CGG | + | chr6_3:63535840-63535859 | Msa0956410:intron | 55.0% | |
| GCGGGATGTAGGGAAGAAGA+AGG | + | chr6_3:63535929-63535948 | Msa0956410:intron | 55.0% | |
| AGTGGCTGGGGTTTGAACCC+CGG | - | chr6_3:63534669-63534688 | None:intergenic | 60.0% | |
| GGCGGTGGTCAGAACAAGAG+AGG | - | chr6_3:63535645-63535664 | None:intergenic | 60.0% | |
| ACTGAGAGGCAGCGGGATGT+AGG | + | chr6_3:63535859-63535878 | Msa0956410:intron | 60.0% | |
| CTGAGAGGCAGCGGGATGTA+GGG | + | chr6_3:63535860-63535879 | Msa0956410:intron | 60.0% | |
| AGGGAGATAAACGGCGGCGA+CGG | + | chr6_3:63535879-63535898 | Msa0956410:intron | 60.0% | |
| AGACGCGGTGGAAAACGGAG+AGG | + | chr6_3:63535904-63535923 | Msa0956410:intron | 60.0% | |
| GGTGGAAAACGGAGAGGCAG+CGG | + | chr6_3:63535910-63535929 | Msa0956410:intron | 60.0% | |
| GTGGAAAACGGAGAGGCAGC+GGG | + | chr6_3:63535911-63535930 | Msa0956410:intron | 60.0% | |
| CTGGTGCGGCTTCCATGGTG+AGG | - | chr6_3:63534406-63534425 | None:intergenic | 65.0% | |
| ACGGAGAGGCAGCGGGATGT+AGG | + | chr6_3:63535918-63535937 | Msa0956410:intron | 65.0% | |
| CGGAGAGGCAGCGGGATGTA+GGG | + | chr6_3:63535919-63535938 | Msa0956410:intron | 65.0% | |
| ACGGCGGCGACGGTTAGACG+CGG | + | chr6_3:63535830-63535849 | Msa0956410:intron | 70.0% | |
| ACGGCGGCGACGGTTAGACG+CGG | + | chr6_3:63535830-63535849 | Msa0956410:intron | 70.0% | |
| GCGGCGACGGTTAGACGCGG+TGG | + | chr6_3:63535833-63535852 | Msa0956410:intron | 75.0% | |
| GCGGCGACGGTTAGACGCGG+TGG | + | chr6_3:63535833-63535852 | Msa0956410:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 63534187 | 63537818 | 63534187 | ID=Msa0956410;Name=Msa0956410 |
| chr6_3 | mRNA | 63534187 | 63537818 | 63534187 | ID=Msa0956410-mRNA-1;Parent=Msa0956410;Name=Msa0956410-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|134 |
| chr6_3 | exon | 63534187 | 63534445 | 63534187 | ID=Msa0956410-mRNA-1:exon:12150;Parent=Msa0956410-mRNA-1 |
| chr6_3 | exon | 63537185 | 63537252 | 63537185 | ID=Msa0956410-mRNA-1:exon:12151;Parent=Msa0956410-mRNA-1 |
| chr6_3 | exon | 63537741 | 63537818 | 63537741 | ID=Msa0956410-mRNA-1:exon:12152;Parent=Msa0956410-mRNA-1 |
| chr6_3 | CDS | 63534187 | 63534445 | 63534187 | ID=Msa0956410-mRNA-1:cds;Parent=Msa0956410-mRNA-1 |
| chr6_3 | CDS | 63537185 | 63537252 | 63537185 | ID=Msa0956410-mRNA-1:cds;Parent=Msa0956410-mRNA-1 |
| chr6_3 | CDS | 63537741 | 63537818 | 63537741 | ID=Msa0956410-mRNA-1:cds;Parent=Msa0956410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
